Citrus Sinensis ID: 030973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MKNSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccEEEEccccccEEEEEEccccccccEEEEHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccHHHHHcccccccccccccEEEEEEcEcccccHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHcccccccccccccEEEEHHHcccEEEEEEEEccccccEEEccHHHHHHHHHHHHHcccccccEEEEEcccccccHEEEEEccccccccc
Coil and Loop (DISEMBL)
MKNSFRIFTRLGGVRYyaafgskdlkidgVKDVIAVasgkggvgksTTAVNLAVALASKCQLKVGlldadvygpsvpmmmkidqkpevtkdmkmvpienygvkcmsmgflvpssspvvwrgpmVMSALRKMSrevdwgnldilvidmppgtgdaqltTTQTLQLSGIR
Flexible Loop (DISEMBL)
MKNSFRIFTRLGGVRYYAAfgskdlkidgVKDVIAVasgkggvgksTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTttqtlqlsgir
Low Complexity Region (SEG)
MKNSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAqltttqtlqlSGIR
Disordered region (IsUnstruct)
****FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID***EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDM*********************
Disordered Region (DISOPRED)
*******************************DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI***********MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGI*
Disordered Region (DISEMBL)
MKNSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGIR
Disordered Region (DISPRO)
**NSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q54F15	323	Iron-sulfur protein NUBPL	yes	no	0.827	0.430	0.591	8e-45
Q8TB37	319	Iron-sulfur protein NUBPL	yes	no	0.857	0.451	0.634	2e-43
Q9CWD8	319	Iron-sulfur protein NUBPL	yes	no	0.857	0.451	0.620	6e-43
Q6CE48	312	Iron-sulfur protein IND1	yes	no	0.827	0.445	0.514	3e-37
Q9ZMM5	368	Protein mrp homolog OS=He	yes	no	0.809	0.369	0.539	5e-37
O24999	368	Protein mrp homolog OS=He	no	no	0.809	0.369	0.539	6e-37
P45135	370	Protein mrp homolog OS=Ha	yes	no	0.827	0.375	0.510	9e-36
P50863	352	Protein mrp homolog SalA	yes	no	0.809	0.386	0.528	4e-34
P0AF08	369	Protein mrp OS=Escherichi	N/A	no	0.827	0.376	0.539	5e-33
P0AF09	369	Protein mrp OS=Escherichi	yes	no	0.827	0.376	0.539	5e-33

>sp|Q54F15|NUBPL_DICDI Iron-sulfur protein NUBPL OS=Dictyostelium discoideum GN=nubpl PE=3 SV=1

 Score =  179 bits (454), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 111/142 (78%), Gaps = 3/142 (2%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM--KIDQ 84
           I+G+K++IAV+S KGGVGKST AVN+A+ L+S   L VGLLD DV+GPS+P+MM  K  +
Sbjct: 53  IEGIKNIIAVSSAKGGVGKSTCAVNIALGLSSH-NLSVGLLDVDVFGPSIPLMMDLKNHE 111

Query: 85  KPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILV 144
           KP   +  +M+P++NYG+KCMSMGFLV    P++WRGPMV SAL K+ R+ DWG+LD+LV
Sbjct: 112 KPFTNELNQMIPLQNYGIKCMSMGFLVNEDDPIIWRGPMVGSALEKLLRQTDWGHLDVLV 171

Query: 145 IDMPPGTGDAQLTTTQTLQLSG 166
            D+PPGTGDA LT  Q + L+G
Sbjct: 172 CDLPPGTGDAILTMCQRVPLTG 193

Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.
Dictyostelium discoideum (taxid: 44689)

>sp|Q8TB37|NUBPL_HUMAN Iron-sulfur protein NUBPL OS=Homo sapiens GN=NUBPL PE=1 SV=3

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 111/145 (76%), Gaps = 1/145 (0%)

Query: 23  KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
           K   I+GVK VI VASGKGGVGKSTTAVNLA+ALA+    K +GLLD DVYGPSVP MM 
Sbjct: 59  KQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMN 118

Query: 82  IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
           +   PE+++   M P+ NYG+ CMSMGFLV  S PVVWRG MVMSA+ K+ R+VDWG LD
Sbjct: 119 LKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLD 178

Query: 142 ILVIDMPPGTGDAQLTTTQTLQLSG 166
            LV+DMPPGTGD QL+ +Q + ++G
Sbjct: 179 YLVVDMPPGTGDVQLSVSQNIPITG 203

Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

Homo sapiens (taxid: 9606)

>sp|Q9CWD8|NUBPL_MOUSE Iron-sulfur protein NUBPL OS=Mus musculus GN=Nubpl PE=2 SV=2

 Score =  173 bits (438), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 113/145 (77%), Gaps = 1/145 (0%)

Query: 23  KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
           K   I+GV++VI VASGKGGVGKSTTAVNLA+ALA+    K VGLLD DVYGPS+P MM 
Sbjct: 59  KQKPIEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMN 118

Query: 82  IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
           +   PE++ +  M P+ NYG+ CMSMGFLV  ++P+VWRG MVMSA+ K+ R+VDWG LD
Sbjct: 119 LRGNPELSPNNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLD 178

Query: 142 ILVIDMPPGTGDAQLTTTQTLQLSG 166
            LV+DMPPGTGD QL+ +Q + +SG
Sbjct: 179 YLVVDMPPGTGDVQLSVSQNIPISG 203

Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

Mus musculus (taxid: 10090)

>sp|Q6CE48|IND1_YARLI Iron-sulfur protein IND1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=IND1 PE=1 SV=1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 103/140 (73%), Gaps = 1/140 (0%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86
           I GVK  I V+S KGGVGKST +VN A++LA +  L+VGLLD D++GPS+P M  +  +P
Sbjct: 63  IAGVKKTIVVSSAKGGVGKSTVSVNTALSLAKRG-LRVGLLDVDIFGPSIPTMFGLSGEP 121

Query: 87  EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVID 146
            +T + K++P+  +G++ MSMGFLV  +  V WRG +V  AL ++ ++VDWG LD+LV+D
Sbjct: 122 RMTHEGKLIPMSKFGIQVMSMGFLVDPNKAVAWRGLLVQKALEQLLQDVDWGTLDVLVMD 181

Query: 147 MPPGTGDAQLTTTQTLQLSG 166
           +PPGTGD QLT  QT+++ G
Sbjct: 182 LPPGTGDVQLTIAQTVKIDG 201

Required for the effective assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Probably facilitates the assembly of Fe-S cofactors and subunits of complex I.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9ZMM5|MRP_HELPJ Protein mrp homolog OS=Helicobacter pylori (strain J99) GN=mrp PE=3 SV=1

 Score =  153 bits (387), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 29  GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV 88
            +K V+ ++SGKGGVGKSTT+VNL++ALA+  Q KVGLLDADVYGP++P MM + Q  +V
Sbjct: 95  NIKHVVMISSGKGGVGKSTTSVNLSIALANLNQ-KVGLLDADVYGPNIPRMMGL-QNADV 152

Query: 89  TKD---MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
             D    K++P++ +GV  MSMG L      ++WRGPM+M A+ +M  ++ WG+LD+LV+
Sbjct: 153 IMDPSGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVV 212

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGDAQLT  Q + LS 
Sbjct: 213 DMPPGTGDAQLTLAQAVPLSA 233

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O24999|MRP_HELPY Protein mrp homolog OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=mrp PE=3 SV=2

 Score =  153 bits (386), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 5/141 (3%)

Query: 29  GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV 88
            +K V+ ++SGKGGVGKSTT+VNL++ALA+  Q KVGLLDADVYGP++P MM + Q  +V
Sbjct: 95  NIKHVVMISSGKGGVGKSTTSVNLSIALANLNQ-KVGLLDADVYGPNIPRMMGL-QSADV 152

Query: 89  TKD---MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
             D    K++P++ +GV  MSMG L      ++WRGPM+M A+ +M  ++ WG+LD+LV+
Sbjct: 153 IMDPSGKKLIPLKAFGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLSDIIWGDLDVLVV 212

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGDAQLT  Q + LS 
Sbjct: 213 DMPPGTGDAQLTLAQAVPLSA 233

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|P45135|MRP_HAEIN Protein mrp homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mrp PE=3 SV=2

 Score =  149 bits (376), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 102/141 (72%), Gaps = 2/141 (1%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM-KIDQK 85
           + GVK++IAV+SGKGGVGKS+ +VNLA+AL ++   +VG+LDAD+YGPS+P M+   DQ+
Sbjct: 103 VKGVKNIIAVSSGKGGVGKSSVSVNLALALQAQGA-RVGILDADIYGPSIPHMLGAADQR 161

Query: 86  PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
           P    +  + PI+ +G+   S+GFL+   S  +WRGPM  SAL ++  E  W +LD LVI
Sbjct: 162 PTSPDNQHITPIKAHGLSANSIGFLMNEDSATIWRGPMASSALSQLLNETLWDSLDYLVI 221

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGD QLT +Q + ++G
Sbjct: 222 DMPPGTGDIQLTLSQQIPVTG 242

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|P50863|SALA_BACSU Protein mrp homolog SalA OS=Bacillus subtilis (strain 168) GN=salA PE=2 SV=1

 Score =  144 bits (362), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 96/138 (69%), Gaps = 2/138 (1%)

Query: 25  LKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84
           L +D     +AVASGKGGVGKST +VNLA++LA +   KVGL+DAD+YG SVP MM I  
Sbjct: 100 LNMDNPPVFLAVASGKGGVGKSTVSVNLAISLA-RLGKKVGLIDADIYGFSVPDMMGITV 158

Query: 85  KPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILV 144
           +P +  + K++P+E +GVK MSMGF V  ++PVVWRGPM+   L     EV+WG +D +V
Sbjct: 159 RPTIEGE-KLLPVERFGVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDYIV 217

Query: 145 IDMPPGTGDAQLTTTQTL 162
           +D+PPGTGD  L     L
Sbjct: 218 LDLPPGTGDVALDVHTML 235

Negatively regulates the expression of hpr/scoC. The effect on hpr/scoC may be indirect.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P0AF08|MRP_ECOLI Protein mrp OS=Escherichia coli (strain K12) GN=mrp PE=3 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID-QK 85
           I+GVK++IAV+SGKGGVGKS+TAVNLA+ALA++   KVG+LDAD+YGPS+P M+  + Q+
Sbjct: 103 INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGA-KVGILDADIYGPSIPTMLGAENQR 161

Query: 86  PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
           P       M PI ++G+   S+G+LV   + +VWRGPM   AL +M +E  W +LD LV+
Sbjct: 162 PTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVL 221

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGD QLT  Q + ++G
Sbjct: 222 DMPPGTGDIQLTLAQNIPVTG 242

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF09|MRP_ECOL6 Protein mrp OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mrp PE=3 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 2/141 (1%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID-QK 85
           I+GVK++IAV+SGKGGVGKS+TAVNLA+ALA++   KVG+LDAD+YGPS+P M+  + Q+
Sbjct: 103 INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGA-KVGILDADIYGPSIPTMLGAENQR 161

Query: 86  PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
           P       M PI ++G+   S+G+LV   + +VWRGPM   AL +M +E  W +LD LV+
Sbjct: 162 PTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVL 221

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGD QLT  Q + ++G
Sbjct: 222 DMPPGTGDIQLTLAQNIPVTG 242

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
224085613	293	predicted protein [Populus trichocarpa]	0.988	0.566	0.772	3e-68
255559965	293	Protein mrp, putative [Ricinus communis]	0.988	0.566	0.766	3e-68
224062188	260	predicted protein [Populus trichocarpa]	0.845	0.546	0.845	8e-65
356536802	277	PREDICTED: iron-sulfur protein NUBPL-lik	0.910	0.552	0.745	8e-63
356545830	277	PREDICTED: iron-sulfur protein NUBPL-lik	0.910	0.552	0.751	9e-63
388502488	279	unknown [Lotus japonicus]	0.910	0.548	0.745	3e-62
297804198	312	hypothetical protein ARALYDRAFT_492911 [	0.863	0.464	0.751	2e-61
449490453	294	PREDICTED: iron-sulfur protein NUBPL-lik	0.958	0.547	0.709	3e-61
147777913	341	hypothetical protein VITISV_031406 [Viti	0.892	0.439	0.74	3e-61
225437266	341	PREDICTED: iron-sulfur protein NUBPL [Vi	0.892	0.439	0.74	3e-61

>gi|224085613|ref|XP_002307635.1| predicted protein [Populus trichocarpa] gi|222857084|gb|EEE94631.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/167 (77%), Positives = 144/167 (86%), Gaps = 1/167 (0%)

Query: 1   MKNSFRIFTRLGGVRYYAA-FGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASK 59
           MK      +RLG +R Y+  F    L+++GVKDVIAVASGKGGVGKSTTAVNLAVALA K
Sbjct: 1   MKGFLGPLSRLGSIRSYSGTFKRSQLRLEGVKDVIAVASGKGGVGKSTTAVNLAVALAIK 60

Query: 60  CQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVW 119
           CQLKVGLLDADVYGPSVPMMMKID+KP++T+D KM+PIENYGVKCMSMGFLV   +P+VW
Sbjct: 61  CQLKVGLLDADVYGPSVPMMMKIDRKPDITEDKKMIPIENYGVKCMSMGFLVEKDAPIVW 120

Query: 120 RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
           RGPMVMSAL KM+R VDWGNLDILV+DMPPGTGDAQLT TQ LQLSG
Sbjct: 121 RGPMVMSALVKMTRGVDWGNLDILVVDMPPGTGDAQLTMTQNLQLSG 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559965|ref|XP_002521001.1| Protein mrp, putative [Ricinus communis] gi|223539838|gb|EEF41418.1| Protein mrp, putative [Ricinus communis]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 143/167 (85%), Gaps = 1/167 (0%)

Query: 1   MKNSFRIFTRLGGVRYYA-AFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASK 59
           MK   R   RLGG R YA +F    L+++GVKDVIAVASGKGGVGKSTTAVNLAVALA+K
Sbjct: 1   MKGFLRPLGRLGGYRCYATSFSRSKLRLEGVKDVIAVASGKGGVGKSTTAVNLAVALATK 60

Query: 60  CQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVW 119
           CQLKVGLLDADVYGPS+P MM+ID+KP+VT D KM+PIENYGVKCMS+GFLV   +P+VW
Sbjct: 61  CQLKVGLLDADVYGPSIPTMMRIDRKPDVTADTKMIPIENYGVKCMSIGFLVEKDAPIVW 120

Query: 120 RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
           RGPMVMSAL KM R VDWGNLDILV+DMPPGTGDAQLT +Q LQLSG
Sbjct: 121 RGPMVMSALEKMLRGVDWGNLDILVVDMPPGTGDAQLTVSQNLQLSG 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062188|ref|XP_002300792.1| predicted protein [Populus trichocarpa] gi|222842518|gb|EEE80065.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/142 (84%), Positives = 132/142 (92%)

Query: 25  LKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84
           L+++GVKDVIAVASGKGGVGKSTTAVNLAVALA  CQLKVGLLDADVYGPSVPMMMKID+
Sbjct: 5   LRLEGVKDVIAVASGKGGVGKSTTAVNLAVALAKNCQLKVGLLDADVYGPSVPMMMKIDR 64

Query: 85  KPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILV 144
           KP++T+D KM+PIENYGVKCMSMGFLV   +P+VWRGPMVMSAL KM+R VDWGNLDILV
Sbjct: 65  KPDITEDKKMIPIENYGVKCMSMGFLVEKDAPIVWRGPMVMSALAKMTRGVDWGNLDILV 124

Query: 145 IDMPPGTGDAQLTTTQTLQLSG 166
           +DMPPGTGDAQLT TQ LQLSG
Sbjct: 125 VDMPPGTGDAQLTMTQNLQLSG 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536802|ref|XP_003536923.1| PREDICTED: iron-sulfur protein NUBPL-like [Glycine max]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 133/157 (84%), Gaps = 4/157 (2%)

Query: 10  RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69
           RLG +R YA    K L+IDGVK+ IAVASGKGGVGKSTTAVNLAVALA KCQLKVGLLDA
Sbjct: 3   RLGSIRSYA----KHLRIDGVKNTIAVASGKGGVGKSTTAVNLAVALARKCQLKVGLLDA 58

Query: 70  DVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALR 129
           DVYGPS+P MM I+ KPEVT D KM+P+ENYG+KCMS+GFLV   +P+VWRGPMV +AL 
Sbjct: 59  DVYGPSIPTMMNINTKPEVTHDKKMIPVENYGIKCMSIGFLVEKDAPIVWRGPMVSNALE 118

Query: 130 KMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
           KM+R VDWGNLDILV+DMPPGTGD Q+  +Q LQLSG
Sbjct: 119 KMTRGVDWGNLDILVMDMPPGTGDVQIAMSQNLQLSG 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545830|ref|XP_003541337.1| PREDICTED: iron-sulfur protein NUBPL-like [Glycine max]

 Score =  244 bits (623), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 118/157 (75%), Positives = 132/157 (84%), Gaps = 4/157 (2%)

Query: 10  RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69
           RLG +R YA    K L+IDGVKD IAVASGKGGVGKSTTAVNLAVALA KCQLKVGLLDA
Sbjct: 3   RLGSIRSYA----KHLRIDGVKDTIAVASGKGGVGKSTTAVNLAVALARKCQLKVGLLDA 58

Query: 70  DVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALR 129
           DVYGPS+P MM I+ KPEVT D KM+PIENYG+KCMS+G LV   +P+VWRGPMV +AL 
Sbjct: 59  DVYGPSIPTMMNINTKPEVTHDKKMIPIENYGIKCMSIGLLVEKDAPIVWRGPMVSNALE 118

Query: 130 KMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
           KM+R VDWGNLDILV+DMPPGTGD Q+  +Q LQLSG
Sbjct: 119 KMTRGVDWGNLDILVMDMPPGTGDVQIAMSQNLQLSG 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502488|gb|AFK39310.1| unknown [Lotus japonicus]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 132/157 (84%), Gaps = 4/157 (2%)

Query: 10  RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69
           RLG VR+YA    K L+IDGVKD IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA
Sbjct: 5   RLGSVRHYA----KHLRIDGVKDTIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 60

Query: 70  DVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALR 129
           DVYGP++P+MM I+ KPE T D KM+PIE YG+KCMS+GFLV    P+VWRGPMV  AL 
Sbjct: 61  DVYGPNIPIMMNINTKPEATLDKKMIPIEKYGIKCMSIGFLVEKDVPIVWRGPMVQKALE 120

Query: 130 KMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
           +M+R VDWGNLDILV+DMPPGTGD Q+  +Q LQLSG
Sbjct: 121 QMTRGVDWGNLDILVMDMPPGTGDVQIAMSQNLQLSG 157

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804198|ref|XP_002869983.1| hypothetical protein ARALYDRAFT_492911 [Arabidopsis lyrata subsp. lyrata] gi|297315819|gb|EFH46242.1| hypothetical protein ARALYDRAFT_492911 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 133/145 (91%)

Query: 22  SKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81
           + +L++ GVKD+IAVASGKGGVGKS+TAVNLAVALA+KC+LK+GLLDADVYGPSVP+MM 
Sbjct: 34  ATELRLHGVKDIIAVASGKGGVGKSSTAVNLAVALATKCELKIGLLDADVYGPSVPIMMN 93

Query: 82  IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
           I+QKP+V +DMKM+P+ENYGV+CMSMG LV   +P+VWRGPMVMSAL KM+R VDWG+LD
Sbjct: 94  INQKPQVNQDMKMIPVENYGVRCMSMGLLVEKDAPLVWRGPMVMSALAKMTRGVDWGDLD 153

Query: 142 ILVIDMPPGTGDAQLTTTQTLQLSG 166
           ILV+DMPPGTGDAQ+T +Q L+LSG
Sbjct: 154 ILVVDMPPGTGDAQITISQNLKLSG 178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490453|ref|XP_004158610.1| PREDICTED: iron-sulfur protein NUBPL-like [Cucumis sativus]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 137/162 (84%), Gaps = 1/162 (0%)

Query: 5   FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV 64
           F    RLG VR Y+A  +K+L+I G+K  IA+ASGKGGVGKSTTAVNLAVALA+KCQLKV
Sbjct: 8   FSCERRLGSVRGYSA-STKELQIHGIKHAIAIASGKGGVGKSTTAVNLAVALANKCQLKV 66

Query: 65  GLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMV 124
           GLLDADVYGP+VP+MM I QKPE+T+D KMVP+ENYGVKCMSMG LV +++ +VWRGPM+
Sbjct: 67  GLLDADVYGPNVPIMMNIHQKPELTEDRKMVPVENYGVKCMSMGLLVENNAALVWRGPMI 126

Query: 125 MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSG 166
            SAL KM+R V WG+LDILV+DMPPGTGD Q+T +Q L LSG
Sbjct: 127 SSALDKMTRGVSWGDLDILVVDMPPGTGDVQITMSQRLSLSG 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777913|emb|CAN75726.1| hypothetical protein VITISV_031406 [Vitis vinifera]

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/150 (74%), Positives = 132/150 (88%)

Query: 18  AAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77
           A F +K L++DGVK+++A+ASGKGGVGKSTTAVNLAVALA KCQLKVG+LDADVYGPSVP
Sbjct: 68  AGFSTKGLQLDGVKNIVAIASGKGGVGKSTTAVNLAVALAKKCQLKVGVLDADVYGPSVP 127

Query: 78  MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW 137
            MM +  +PEVT+D K+VP +NYGVKCMS+GFLVP  SP+VWRGPMV SAL K+SR VDW
Sbjct: 128 TMMNLHGEPEVTEDRKIVPFQNYGVKCMSIGFLVPKDSPLVWRGPMVASALEKLSRGVDW 187

Query: 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGI 167
           GNLDILV+DMPPGTGD Q+T +Q LQL+G+
Sbjct: 188 GNLDILVVDMPPGTGDTQITISQRLQLTGV 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437266|ref|XP_002282449.1| PREDICTED: iron-sulfur protein NUBPL [Vitis vinifera] gi|297735519|emb|CBI17959.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/150 (74%), Positives = 132/150 (88%)

Query: 18  AAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77
           A F +K L++DGVK+++A+ASGKGGVGKSTTAVNLAVALA KCQLKVG+LDADVYGPSVP
Sbjct: 68  AGFSTKGLQLDGVKNIVAIASGKGGVGKSTTAVNLAVALAKKCQLKVGVLDADVYGPSVP 127

Query: 78  MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW 137
            MM +  +PEVT+D K+VP +NYGVKCMS+GFLVP  SP+VWRGPMV SAL K+SR VDW
Sbjct: 128 TMMNLHGEPEVTEDRKIVPFQNYGVKCMSIGFLVPKDSPLVWRGPMVASALEKLSRGVDW 187

Query: 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGI 167
           GNLDILV+DMPPGTGD Q+T +Q LQL+G+
Sbjct: 188 GNLDILVVDMPPGTGDTQITISQRLQLTGV 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2122995	313	INDH "iron-sulfur protein requ	0.851	0.456	0.727	9.9e-55
UNIPROTKB|Q8TB37	319	NUBPL "Iron-sulfur protein NUB	0.779	0.410	0.666	1.9e-42
UNIPROTKB|F1NG62	289	NUBPL "Uncharacterized protein	0.779	0.453	0.643	4e-42
UNIPROTKB|E1BE32	331	NUBPL "Uncharacterized protein	0.857	0.435	0.606	5.2e-42
RGD|1307232	319	Nubpl "nucleotide binding prot	0.857	0.451	0.6	8.4e-42
MGI|MGI:1924076	319	Nubpl "nucleotide binding prot	0.857	0.451	0.6	1.1e-41
UNIPROTKB|E2REF1	333	NUBPL "Uncharacterized protein	0.857	0.432	0.593	4.6e-41
DICTYBASE|DDB_G0291193	323	nubpl "Mrp/NBP35 family protei	0.755	0.393	0.607	2e-40
UNIPROTKB|F8W061	133	NUBPL "Iron-sulfur protein NUB	0.75	0.947	0.653	2.9e-39
FB|FBgn0032986	293	CG3262 [Drosophila melanogaste	0.940	0.539	0.490	3e-37

TAIR|locus:2122995 INDH "iron-sulfur protein required for NADH dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 104/143 (72%), Positives = 124/143 (86%)

Query:    24 DLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83
             +L++ GVKD+IAVASGKGGVGKS+TAVNLAVALA+KC+LK+GLLDADVYGPSVP+MM I+
Sbjct:    36 ELRLHGVKDIIAVASGKGGVGKSSTAVNLAVALANKCELKIGLLDADVYGPSVPIMMNIN 95

Query:    84 QKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDIL 143
             QKP+V +DMKM+P+ENYGVKCMSMG LV   +P+VWRGPMVMSAL KM++ VDWG+LDIL
Sbjct:    96 QKPQVNQDMKMIPVENYGVKCMSMGLLVEKDAPLVWRGPMVMSALAKMTKGVDWGDLDIL 155

Query:   144 VIDMPPGTGDAXXXXXXXXXXSG 166
             V+DMPPGTGDA          SG
Sbjct:   156 VVDMPPGTGDAQISISQNLKLSG 178

GO:0005739 "mitochondrion" evidence=ISM;IDA

UNIPROTKB|Q8TB37 NUBPL "Iron-sulfur protein NUBPL" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/132 (66%), Positives = 102/132 (77%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GVK VI VASGKGGVGKSTTAVNLA+ALA+    K +GLLD DVYGPSVP MM 
Sbjct:    59 KQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMN 118

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE+++   M P+ NYG+ CMSMGFLV  S PVVWRG MVMSA+ K+ R+VDWG LD
Sbjct:   119 LKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLD 178

Query:   142 ILVIDMPPGTGD 153
              LV+DMPPGTGD
Sbjct:   179 YLVVDMPPGTGD 190

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

UNIPROTKB|F1NG62 NUBPL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 85/132 (64%), Positives = 103/132 (78%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GVK V+ VASGKGGVGKST AVN+A+ALA+    K VGLLDAD+YGPS+P MM 
Sbjct:    64 KQKPIEGVKQVLVVASGKGGVGKSTAAVNIALALAANDSAKEVGLLDADIYGPSIPKMMN 123

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE+T    M P++NYG+ CMSMGFL+  ++PVVWRG MVMSA+ K+ R+VDWG LD
Sbjct:   124 LKGNPELTPKNLMRPLKNYGIACMSMGFLIEEAAPVVWRGLMVMSAVEKLLRQVDWGQLD 183

Query:   142 ILVIDMPPGTGD 153
              LVIDMPPGTGD
Sbjct:   184 YLVIDMPPGTGD 195

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

UNIPROTKB|E1BE32 NUBPL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 88/145 (60%), Positives = 105/145 (72%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GVK VI VASGKGGVGKSTTAVNLA+ALA+    K VGLLD DVYGPS+P MM 
Sbjct:    59 KQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMN 118

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE+++   M P+ NYG+ CMSMGFLV  ++P+VWRG MVMSA+ K+ R+VDWG LD
Sbjct:   119 LKGNPELSQSNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLD 178

Query:   142 ILVIDMPPGTGDAXXXXXXXXXXSG 166
              LV+DMPPGTGD           SG
Sbjct:   179 YLVVDMPPGTGDVQLSVSQNIPISG 203

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1307232 Nubpl "nucleotide binding protein-like" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 87/145 (60%), Positives = 106/145 (73%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GV++VI VASGKGGVGKSTTAVNLA+ALA+    K VGLLD DVYGPS+P MM 
Sbjct:    59 KQKPIEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMN 118

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE++ +  M P+ NYG+ CMSMGFLV  ++P+VWRG MVMSA+ K+ R+VDWG LD
Sbjct:   119 LKGNPELSPNNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLD 178

Query:   142 ILVIDMPPGTGDAXXXXXXXXXXSG 166
              LV+DMPPGTGD           SG
Sbjct:   179 YLVVDMPPGTGDVQLSVSQNIPISG 203

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

MGI|MGI:1924076 Nubpl "nucleotide binding protein-like" [Mus musculus (taxid:10090)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 87/145 (60%), Positives = 106/145 (73%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GV++VI VASGKGGVGKSTTAVNLA+ALA+    K VGLLD DVYGPS+P MM 
Sbjct:    59 KQKPIEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMN 118

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE++ +  M P+ NYG+ CMSMGFLV  ++P+VWRG MVMSA+ K+ R+VDWG LD
Sbjct:   119 LRGNPELSPNNLMRPLLNYGIACMSMGFLVEETAPLVWRGLMVMSAIEKLLRQVDWGQLD 178

Query:   142 ILVIDMPPGTGDAXXXXXXXXXXSG 166
              LV+DMPPGTGD           SG
Sbjct:   179 YLVVDMPPGTGDVQLSVSQNIPISG 203

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

GO:0070584 "mitochondrion morphogenesis" evidence=ISO

UNIPROTKB|E2REF1 NUBPL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 86/145 (59%), Positives = 104/145 (71%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GVK VI VASGKGGVGKSTTAVNLA+ LA+    K VGLLD DVYGPS+P MM 
Sbjct:    63 KQKPIEGVKQVIVVASGKGGVGKSTTAVNLALGLAANDSSKAVGLLDVDVYGPSIPKMMN 122

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE++++  M P+ NYG+ CMSMGFL+  ++PVVWRG MVMSA+ K+ R+VDWG LD
Sbjct:   123 LKGNPELSQNNLMRPLLNYGIACMSMGFLIEETAPVVWRGLMVMSAIEKLLRQVDWGPLD 182

Query:   142 ILVIDMPPGTGDAXXXXXXXXXXSG 166
              LV+D PPGTGD           SG
Sbjct:   183 YLVVDTPPGTGDVQLSISQNIPISG 207

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

DICTYBASE|DDB_G0291193 nubpl "Mrp/NBP35 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 79/130 (60%), Positives = 104/130 (80%)

Query:    27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM--KIDQ 84
             I+G+K++IAV+S KGGVGKST AVN+A+ L+S   L VGLLD DV+GPS+P+MM  K  +
Sbjct:    53 IEGIKNIIAVSSAKGGVGKSTCAVNIALGLSSH-NLSVGLLDVDVFGPSIPLMMDLKNHE 111

Query:    85 KPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILV 144
             KP   +  +M+P++NYG+KCMSMGFLV    P++WRGPMV SAL K+ R+ DWG+LD+LV
Sbjct:   112 KPFTNELNQMIPLQNYGIKCMSMGFLVNEDDPIIWRGPMVGSALEKLLRQTDWGHLDVLV 171

Query:   145 IDMPPGTGDA 154
              D+PPGTGDA
Sbjct:   172 CDLPPGTGDA 181

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F8W061 NUBPL "Iron-sulfur protein NUBPL" [Homo sapiens (taxid:9606)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/127 (65%), Positives = 97/127 (76%)

Query:    23 KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVYGPSVPMMMK 81
             K   I+GVK VI VASGKGGVGKSTTAVNLA+ALA+    K +GLLD DVYGPSVP MM 
Sbjct:     7 KQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMN 66

Query:    82 IDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
             +   PE+++   M P+ NYG+ CMSMGFLV  S PVVWRG MVMSA+ K+ R+VDWG LD
Sbjct:    67 LKGNPELSQSNLMRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLD 126

Query:   142 ILVIDMP 148
              LV+DMP
Sbjct:   127 YLVVDMP 133

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0032986 CG3262 [Drosophila melanogaster (taxid:7227)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 79/161 (49%), Positives = 107/161 (66%)

Query:     9 TRLGG--VRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66
             T+L G  V+  A    K   I GV+D+I VASGKGGVGKST AVN A +LA K   +VGL
Sbjct:    15 TKLTGSQVKLMARGLPKKQPIIGVQDIIVVASGKGGVGKSTVAVNFACSLA-KLGKRVGL 73

Query:    67 LDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMS 126
             LD D++GP++P++M +  +P V     M+P +NY VKC+SMG L P  + V+WRGP+VMS
Sbjct:    74 LDGDIFGPTIPLLMNVHGEPVVNDKNLMIPPQNYNVKCLSMGMLTPVETSVIWRGPLVMS 133

Query:   127 ALRKMSREVDWGNLDILVIDMPPGTGDAXXXXXXXXXXSGI 167
             A++++ +  DWG LD+LVID PPGTGD           +G+
Sbjct:   134 AIQRLLKGTDWGLLDVLVIDTPPGTGDVHLSLSQHAPITGV 174

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00051274	hypothetical protein (293 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•						•		0.445
	fgenesh4_pg.C_scaffold_15960000001	Predicted protein (371 aa)	•						•		0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
PRK11670	369	PRK11670, PRK11670, antiporter inner membrane prot	5e-53
cd02037	169	cd02037, MRP-like, MRP (Multiple Resistance and pH	8e-48
COG0489	265	COG0489, Mrp, ATPases involved in chromosome parti	1e-45
COG0455	262	COG0455, flhG, Antiactivator of flagellar biosynth	3e-15
COG1192	259	COG1192, Soj, ATPases involved in chromosome parti	2e-14
cd03110	179	cd03110, Fer4_NifH_child, This protein family's fu	5e-14
cd02042	104	cd02042, ParA, ParA and ParB of Caulobacter cresce	7e-13
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	2e-12
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	4e-12
COG1149	284	COG1149, COG1149, MinD superfamily P-loop ATPase c	5e-12
cd02036	179	cd02036, MinD, Bacterial cell division requires th	6e-12
pfam13614	145	pfam13614, AAA_31, AAA domain	1e-10
pfam10609	81	pfam10609, ParA, ParA/MinD ATPase like	6e-10
cd03111	106	cd03111, CpaE_like, This protein family consists o	2e-08
TIGR01969	251	TIGR01969, minD_arch, cell division ATPase MinD, a	2e-08
TIGR03018	207	TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEP-	3e-08
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	7e-08
COG2894	272	COG2894, MinD, Septum formation inhibitor-activati	9e-08
TIGR01968	261	TIGR01968, minD_bact, septum site-determining prot	2e-07
CHL00175	281	CHL00175, minD, septum-site determining protein; V	8e-07
pfam09140	262	pfam09140, MipZ, ATPase MipZ	1e-06
PHA02518	211	PHA02518, PHA02518, ParA-like protein; Provisional	2e-05
TIGR03815	322	TIGR03815, CpaE_hom_Actino, helicase/secretion nei	5e-05
cd02035	217	cd02035, ArsA, ArsA ATPase functionas as an efflux	5e-05
PRK13185	270	PRK13185, chlL, protochlorophyllide reductase iron	9e-05
COG0003	322	COG0003, ArsA, Predicted ATPase involved in chromo	1e-04
TIGR01007	204	TIGR01007, eps_fam, capsular exopolysaccharide fam	1e-04
cd02032	267	cd02032, Bchl_like, This family of proteins contai	2e-04
cd02117	212	cd02117, NifH_like, This family contains the NifH	3e-04
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	5e-04
TIGR03371	246	TIGR03371, cellulose_yhjQ, cellulose synthase oper	0.001
COG1348	278	COG1348, NifH, Nitrogenase subunit NifH (ATPase) [	0.001
TIGR01281	268	TIGR01281, DPOR_bchL, light-independent protochlor	0.001
COG3640	255	COG3640, CooC, CO dehydrogenase maturation factor	0.001
cd02040	270	cd02040, NifH, NifH gene encodes component II (iro	0.002
CHL00072	290	CHL00072, chlL, photochlorophyllide reductase subu	0.002
PRK13231	264	PRK13231, PRK13231, nitrogenase reductase-like pro	0.002
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	0.003

>gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional

 Score =  172 bits (437), Expect = 5e-53
 Identities = 76/141 (53%), Positives = 103/141 (73%), Gaps = 2/141 (1%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI-DQK 85
           ++GVK++IAV+SGKGGVGKS+TAVNLA+ALA++   KVG+LDAD+YGPS+P M+   DQ+
Sbjct: 103 VNGVKNIIAVSSGKGGVGKSSTAVNLALALAAE-GAKVGILDADIYGPSIPTMLGAEDQR 161

Query: 86  PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
           P       M PI  +G+   S+G+LV   + +VWRGPM   AL +M +E  W +LD LV+
Sbjct: 162 PTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVL 221

Query: 146 DMPPGTGDAQLTTTQTLQLSG 166
           DMPPGTGD QLT  Q + ++G
Sbjct: 222 DMPPGTGDIQLTLAQNIPVTG 242

Length = 369

>gnl|CDD|238994 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

 Score =  152 bits (387), Expect = 8e-48
 Identities = 65/134 (48%), Positives = 74/134 (55%), Gaps = 40/134 (29%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
           VIAV SGKGGVGKST AVNLA+ALA     KVGLLDAD+YGPS+P M             
Sbjct: 1   VIAVMSGKGGVGKSTVAVNLALALAKL-GYKVGLLDADIYGPSIPKM------------- 46

Query: 93  KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG 152
                                     WRGPM M A+++   +VDWG LD LVIDMPPGTG
Sbjct: 47  --------------------------WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG 80

Query: 153 DAQLTTTQTLQLSG 166
           D  LT  Q+L + G
Sbjct: 81  DEHLTLAQSLPIDG 94

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. Length = 169

>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score =  150 bits (380), Expect = 1e-45
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 7/146 (4%)

Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
              GVK+VIAV SGKGGVGKST AVNLA ALA     +V LLDAD+ GPS+P M+ ++  
Sbjct: 52  LRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQL-GKRVLLLDADLRGPSIPRMLGLENL 110

Query: 86  ---PEVTKDMKMVPIE-NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD 141
               E+     + P+  + G+K +S+  L P   PV+ RG +   A+ ++  +V WG  D
Sbjct: 111 PGLTELLAGEALEPVIQHDGIKVLSILPLGPV--PVIPRGLLGSKAMLQLLEDVLWGEYD 168

Query: 142 ILVIDMPPGTGDAQLTTTQTLQLSGI 167
            ++ID PPGTGDA  T  Q +    +
Sbjct: 169 YVIIDTPPGTGDADATVLQRIPDGVV 194

Length = 265

>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 34/143 (23%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP----EV 88
           VIAV SGKGGVGK+T   NL  ALA+     V L+DAD+   ++ +++ ++ KP    +V
Sbjct: 4   VIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDV 63

Query: 89  TKDMK-----MVPIENYGVKCMSMGFLVPSSS---------PVVWRGPMVMSALRKMSRE 134
                     +      G+       ++P  S         P       V+  L ++   
Sbjct: 64  LAGEASIEDIIYETPQDGLY------VLPGGSGLEDLAKLDPEDLED--VIKELEEL--- 112

Query: 135 VDWGNLDILVIDMPPGTGDAQLT 157
                 D ++ID   G     L+
Sbjct: 113 -----YDYILIDTGAGLSRDTLS 130

Length = 262

>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 27/139 (19%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD------------VYGPSVPMMM 80
           +IAVA+ KGGVGK+TTAVNLA ALA +   KV L+D D                     +
Sbjct: 4   IIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNL 63

Query: 81  KIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS----SSPVVWRGPMVM--SALRKMSRE 134
               K         V IE           L+PS    +         V     L+++   
Sbjct: 64  LSGLKERPDILDYTVVIEGL--------DLIPSNIDLAEGAEIELNAVAKELLLKRLLDP 115

Query: 135 VDWGNLDILVIDMPPGTGD 153
           V   + D ++ID PP  G 
Sbjct: 116 V-KDDYDYIIIDTPPSLGV 133

Length = 259

>gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is unkown

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 23/123 (18%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK--IDQKPEVTKD 91
           IAV SGKGG GK+T    LA  L       V L D DV  P++ + +K  I+++ +    
Sbjct: 2   IAVISGKGGTGKTTVTAALAALLK-----NVVLADCDVDAPNLHLFLKPEIEEEEDFIVG 56

Query: 92  -MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPP 149
             K V        C+S G               +++ +RK ++E+      ++++ID PP
Sbjct: 57  GKKAVIDPE---LCISCGLCGK-----------LVTEVRKHAKEIAKAEGAELIIIDGPP 102

Query: 150 GTG 152
           G G
Sbjct: 103 GIG 105

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. Length = 179

>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

 Score = 61.1 bits (149), Expect = 7e-13
 Identities = 25/38 (65%), Positives = 30/38 (78%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VIAVA+ KGGVGK+TTAVNLA ALA +   +V L+D D
Sbjct: 1  VIAVANQKGGVGKTTTAVNLAAALARR-GKRVLLIDLD 37

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. Length = 104

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 15/133 (11%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK 93
           IA+A  KGGVGK+T A NLA ALA K   +V L+D D    +   + K+++      ++ 
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALA-KRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIV 59

Query: 94  MVP----IENYGVKCMSMG--FLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNL 140
                  I    V   ++    L+PS+       S ++  G    S LR     +     
Sbjct: 60  DAQALQAIAAAIVPSRNLDPLLLIPSNLSLENFESELIVEG-KRESRLRAALESLIKLAY 118

Query: 141 DILVIDMPPGTGD 153
           D ++ID PPG G+
Sbjct: 119 DYVIIDGPPGLGE 131

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 59.9 bits (146), Expect = 4e-12
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          +IAV SGKGGVGK+  + NLA+ALA K   +V LLDAD
Sbjct: 1  IIAVTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD 37

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 70/181 (38%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID---------- 83
           +AVASGKGG GK+T A NLAV L  K   K+ L D DV  P++ +++ ++          
Sbjct: 4   VAVASGKGGTGKTTVAANLAVLLGDK--YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRG 61

Query: 84  QKPEVTKD----------------MKMVPIENYGV---KC-------------------M 105
           + PE+  +                + ++P     +    C                   +
Sbjct: 62  EIPEIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPV 121

Query: 106 SMGFLVPSSSPVVWRGPMVM--------------SALRKMSREVDWGNLDILVIDMPPGT 151
            +G +  S +   +  P++               +AL+K ++E      D+L+ID   GT
Sbjct: 122 VIGKIYESKTD--YGFPLISGRLNVGEEESGKLVTALKKHAKE----LADLLIIDSAAGT 175

Query: 152 G 152
           G
Sbjct: 176 G 176

Length = 284

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT 89
          VI V SGKGGVGK+TT  NL  ALA +   KV L+DAD+   ++ +++ ++ +   T
Sbjct: 1  VIVVTSGKGGVGKTTTTANLGTALA-QLGYKVVLIDADLGLRNLDLILGLENRVVYT 56

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|222264 pfam13614, AAA_31, AAA domain

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 28/132 (21%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEV-- 88
           VI V S  GG GK+T A+NLA +LA +   KV  LD + Y   + + + ++ K   ++  
Sbjct: 2   VIGVYSPVGGEGKTTFALNLAQSLA-EEGPKVLYLDLEEYSGDLALFLGLEPKGLSDLLY 60

Query: 89  -TKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL------- 140
             K +  + I+  G     + +L P  +P           LR++S E +W  L       
Sbjct: 61  YLKRLDSMLIQAMGG----LDYLAPPRNP---------EDLREVSPE-EWEQLLERLRER 106

Query: 141 -DILVIDMPPGT 151
            D++V+D+ P  
Sbjct: 107 YDVIVLDLGPLV 118

This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 145

>gnl|CDD|204531 pfam10609, ParA, ParA/MinD ATPase like

 Score = 52.8 bits (128), Expect = 6e-10
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 140 LDILVIDMPPGTGDAQLTTTQTLQLSGI 167
           LD L+ID+PPGTGD  LT  Q+L + G 
Sbjct: 1   LDYLLIDLPPGTGDEHLTLAQSLPVDGA 28

This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits. Length = 81

>gnl|CDD|239385 cd03111, CpaE_like, This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VIA    KGGVG +T A NLAVALA +   +V L+D D
Sbjct: 1  VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD 38

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. Length = 106

>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86
          +I +ASGKGG GK+T   NL VALA K   KV  LDAD+   ++ +++ ++ KP
Sbjct: 2  IITIASGKGGTGKTTITANLGVALA-KLGKKVLALDADITMANLELILGMEDKP 54

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251

>gnl|CDD|132063 TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEP-CTERM locus tyrosine autokinase

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)

Query: 21  GSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM 80
            +         ++I V S   G GKS TA+NLA++LA +    V L+DAD+  PS+   +
Sbjct: 25  NAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTL 84

Query: 81  KIDQKPEVTKDMKMVPIENYGVKCMSMGF----LVPSSSPVVWRGPMVMS-ALRKMSREV 135
            ++ +P ++ D  + P+ +     +        L+P+         ++ S  +R +  E+
Sbjct: 85  GLEAEPGLS-DCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHEL 143

Query: 136 DWGNLD-ILVIDMPP 149
                D I++ID PP
Sbjct: 144 ARRYPDRIIIIDTPP 158

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. Length = 207

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          + V +GKGGVGK+T A NLA ALA +   +V L+D  V
Sbjct: 1  VIVVTGKGGVGKTTLAANLAAALAKR-GKRVLLIDDYV 37

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|225447 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          +I V SGKGGVGK+TT  N+  ALA   + KV L+D D+
Sbjct: 4  IIVVTSGKGGVGKTTTTANIGTALAQLGK-KVVLIDFDI 41

Length = 272

>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          VI + SGKGGVGK+TT  NL  ALA +   KV L+DAD+
Sbjct: 3  VIVITSGKGGVGKTTTTANLGTALA-RLGKKVVLIDADI 40

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model [Cellular processes, Cell division]. Length = 261

>gnl|CDD|214385 CHL00175, minD, septum-site determining protein; Validated

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          +I + SGKGGVGK+TT  NL +++A +   +V L+DAD+
Sbjct: 17 IIVITSGKGGVGKTTTTANLGMSIA-RLGYRVALIDADI 54

Length = 281

>gnl|CDD|220125 pfam09140, MipZ, ATPase MipZ

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VI V + KGG GKSTTAV++AVAL      +V  +D D
Sbjct: 2  VIVVGNEKGGSGKSTTAVHVAVALLYLGA-RVATIDLD 38

MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. Length = 262

>gnl|CDD|222854 PHA02518, PHA02518, ParA-like protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75
          +IAV + KGG GK+T A NLA  L +    KV L+D D  G S
Sbjct: 2  IIAVLNQKGGAGKTTVATNLASWLHADGH-KVLLVDLDPQGSS 43

Length = 211

>gnl|CDD|234363 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86
           V+AV  G+GG G ST A  LA+A A++  L+  L+DAD +G  + +++  +  P
Sbjct: 95  VVAVIGGRGGAGASTLAAALALA-AARHGLRTLLVDADPWGGGLDLLLGAEDVP 147

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PMID:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. Length = 322

>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKV---------GLLDADVYGPSVPMMMKIDQKPEV 88
           +GKGGVGK+T A   AV LA +   KV          L D  +   S      I + PE+
Sbjct: 5   TGKGGVGKTTIAAATAVRLAEE-GKKVLLVSTDPAHNLSDKGLPNLSD---AFIVEDPEI 60

Query: 89  TKD---MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
             +    ++             G L+   +     G   +++L  + RE   G  D++V 
Sbjct: 61  APNLYREEVDATRRVERAWGGEGGLMLELA-AALPGIEELASLLAVFREFSEGLYDVIVF 119

Query: 146 DMPPGTGDA 154
           D  P TG  
Sbjct: 120 DTAP-TGHT 127

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. Length = 217

>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASK 59
          V+AV  GKGG+GKSTT+ NL+ A A  
Sbjct: 4  VLAV-YGKGGIGKSTTSSNLSAAFAKL 29

Length = 270

>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 33/141 (23%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM-------MMKIDQKP-EVT 89
           +GKGGVGK+T A   AV LA     KV L+  D      P         +++   P +V 
Sbjct: 8   TGKGGVGKTTIAAATAVKLAES-GKKVLLVSTD------PAHSLGDVFDLELGHDPRKVG 60

Query: 90  K-------DMKMVPIENYG---VKCMSMGFLVPSSSPV------VWRGPMVMSALRKMSR 133
                   D     +E Y       ++          +         G     AL K+  
Sbjct: 61  PNLDALELDP-EKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILE 119

Query: 134 EVDWGNLDILVIDMPPGTGDA 154
               G  D++V+D  P TG  
Sbjct: 120 YYVSGEYDVIVVDTAP-TGHT 139

Length = 322

>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 24 DLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76
                +K V+ + S K G GKSTT+ N+AVA A     K  L+D D+    +
Sbjct: 11 QFSGAEIK-VLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGDMRNSVM 61

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 204

>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and chlL

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/27 (66%), Positives = 23/27 (85%), Gaps = 1/27 (3%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASK 59
          V+AV  GKGG+GKSTT+ NL+VALA +
Sbjct: 2  VLAV-YGKGGIGKSTTSSNLSVALAKR 27

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. Length = 267

>gnl|CDD|239034 cd02117, NifH_like, This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALA 57
           IA+  GKGG+GKSTT+ NL+ ALA
Sbjct: 2  QIAI-YGKGGIGKSTTSQNLSAALA 25

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. Length = 212

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS--VPMMMKIDQKPEVTK 90
            IA+ +GKGGVGK+T A  LA  LA K +  V  +DAD   P      +    +  E+  
Sbjct: 1   KIAI-TGKGGVGKTTIAALLARYLAEKGK-PVLAIDAD---PDDLPERLSV--EVGEIKL 53

Query: 91  DMKMVPIENYGVKC 104
            + M      G  C
Sbjct: 54  LLVMGMGRPGGEGC 67

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|234188 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALAS 58
          VIA+ S +GGVGK+T   NLA AL  
Sbjct: 3  VIAIVSVRGGVGKTTLTANLASALKL 28

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 246

>gnl|CDD|224267 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 39 GKGGVGKSTTAVNLAVALAS 58
          GKGG+GKSTT+ NLA ALA 
Sbjct: 8  GKGGIGKSTTSQNLAAALAE 27

Length = 278

>gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 16/27 (59%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASK 59
          ++AV  GKGG+GKSTT+ NL+VA A  
Sbjct: 2  ILAV-YGKGGIGKSTTSSNLSVAFAKL 27

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 268

>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
           IA+ +GKGGVGK+T A  L   L SK    V ++DAD
Sbjct: 2  KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38

Length = 255

>gnl|CDD|238996 cd02040, NifH, NifH gene encodes component II (iron protein) of nitrogenase

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 39 GKGGVGKSTTAVNLAVALA 57
          GKGG+GKSTT  NL+ ALA
Sbjct: 8  GKGGIGKSTTTQNLSAALA 26

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. Length = 270

>gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 13/21 (61%), Positives = 19/21 (90%)

Query: 39 GKGGVGKSTTAVNLAVALASK 59
          GKGG+GKSTT+ N+++ALA +
Sbjct: 7  GKGGIGKSTTSCNISIALARR 27

Length = 290

>gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 14/80 (17%)

Query: 39  GKGGVGKSTTAVNLAVALASKCQLKVGLLD--AD----VYG---PSVPMMMKIDQKPEVT 89
           GKGG+GKSTT  N+A A ++  ++ V   D  AD    + G   P+V   +K ++KPE+ 
Sbjct: 9   GKGGIGKSTTVSNMAAAYSNDHRVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELE 68

Query: 90  KDMKMVPIENYG-VKCMSMG 108
                +  E +  + C+  G
Sbjct: 69  D----IIHEGFNGILCVESG 84

Length = 264

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 39  GKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
           GKGGVGK+T A  +AV LA+K  L V L  +D
Sbjct: 328 GKGGVGKTTVAAAIAVRLANK-GLDVHLTTSD 358

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PRK11670	369	antiporter inner membrane protein; Provisional	99.96
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	99.96
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.94
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.94
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.93
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.93
PRK11519	719	tyrosine kinase; Provisional	99.92
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.92
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.92
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.91
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.9
PRK10037	250	cell division protein; Provisional	99.9
PHA02519	387	plasmid partition protein SopA; Reviewed	99.9
CHL00175	281	minD septum-site determining protein; Validated	99.9
COG2894	272	MinD Septum formation inhibitor-activating ATPase	99.9
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.9
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.89
PRK10818	270	cell division inhibitor MinD; Provisional	99.89
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.89
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.89
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.89
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.89
cd02117	212	NifH_like This family contains the NifH (iron prot	99.89
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.89
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.89
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.89
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.88
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.88
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.87
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.87
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.87
PRK13236	296	nitrogenase reductase; Reviewed	99.86
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.86
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.85
PHA02518	211	ParA-like protein; Provisional	99.85
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.85
cd02032	267	Bchl_like This family of proteins contains bchL an	99.85
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.84
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.84
cd03110	179	Fer4_NifH_child This protein family's function is	99.83
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.83
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.82
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.8
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.79
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.79
cd02036	179	MinD Bacterial cell division requires the formatio	99.78
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.78
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.73
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.73
cd03111	106	CpaE_like This protein family consists of proteins	99.71
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.71
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	99.71
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.69
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.68
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	99.68
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.68
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	99.65
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.57
cd02034	116	CooC The accessory protein CooC, which contains a	99.56
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.56
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.52
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.46
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.45
KOG2825	323	consensus Putative arsenite-translocating ATPase [	99.44
PRK13886	241	conjugal transfer protein TraL; Provisional	99.41
cd03114	148	ArgK-like The function of this protein family is u	99.4
PRK10867	433	signal recognition particle protein; Provisional	99.4
TIGR00959	428	ffh signal recognition particle protein. This mode	99.35
PRK10416	318	signal recognition particle-docking protein FtsY;	99.34
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.32
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.3
PRK13768	253	GTPase; Provisional	99.29
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.2
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.19
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	99.13
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.11
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.08
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	99.07
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	99.06
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	99.06
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.06
PRK14974	336	cell division protein FtsY; Provisional	99.01
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.0
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	98.99
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.97
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.96
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.9
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.89
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.88
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.76
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	98.73
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.7
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.66
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.65
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	98.63
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.57
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.54
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	98.52
KOG1533	290	consensus Predicted GTPase [General function predi	98.52
COG1341	398	Predicted GTPase or GTP-binding protein [General f	98.51
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.5
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.47
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	98.46
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.39
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.39
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.34
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.33
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.28
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.28
PRK00889	175	adenylylsulfate kinase; Provisional	98.26
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.26
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.25
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.19
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.16
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.15
KOG0781	587	consensus Signal recognition particle receptor, al	98.14
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.07
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.07
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.06
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	98.03
PRK12374	231	putative dithiobiotin synthetase; Provisional	98.03
PHA02542	473	41 41 helicase; Provisional	98.03
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	98.01
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.01
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.93
PRK06067	234	flagellar accessory protein FlaH; Validated	97.92
PRK04296	190	thymidine kinase; Provisional	97.91
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.91
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.9
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.88
smart00382	148	AAA ATPases associated with a variety of cellular	97.86
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.86
PRK08233	182	hypothetical protein; Provisional	97.85
PRK07667	193	uridine kinase; Provisional	97.78
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.77
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	97.76
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.75
PRK11823	446	DNA repair protein RadA; Provisional	97.72
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.7
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.69
PRK05632	684	phosphate acetyltransferase; Reviewed	97.69
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.66
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.65
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.64
PRK06696	223	uridine kinase; Validated	97.63
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.61
PRK00784	488	cobyric acid synthase; Provisional	97.6
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.58
PRK05973	237	replicative DNA helicase; Provisional	97.58
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.58
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.57
cd03116	159	MobB Molybdenum is an essential trace element in t	97.57
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	97.55
PF13479	213	AAA_24: AAA domain	97.55
PF13245	76	AAA_19: Part of AAA domain	97.54
PRK03846	198	adenylylsulfate kinase; Provisional	97.54
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.53
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.52
PRK04328	249	hypothetical protein; Provisional	97.52
PRK07952	244	DNA replication protein DnaC; Validated	97.49
PRK15453	290	phosphoribulokinase; Provisional	97.49
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.49
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.48
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.48
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.44
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	97.43
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.42
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.41
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	97.39
cd03112	158	CobW_like The function of this protein family is u	97.39
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.36
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	97.36
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.35
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	97.34
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.34
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	97.34
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.33
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.32
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.31
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.3
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	97.3
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.23
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.22
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.22
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.2
PRK05541	176	adenylylsulfate kinase; Provisional	97.17
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.14
PRK05480	209	uridine/cytidine kinase; Provisional	97.13
PRK06762	166	hypothetical protein; Provisional	97.12
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.1
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.1
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.09
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	97.09
PHA00729	226	NTP-binding motif containing protein	97.09
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	97.07
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.01
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.01
PRK09302	509	circadian clock protein KaiC; Reviewed	96.99
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	96.98
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.97
PRK06526	254	transposase; Provisional	96.92
PRK05439	311	pantothenate kinase; Provisional	96.92
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.91
PRK09354	349	recA recombinase A; Provisional	96.9
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.9
PTZ00035	337	Rad51 protein; Provisional	96.88
PRK12377	248	putative replication protein; Provisional	96.86
PRK05595	444	replicative DNA helicase; Provisional	96.84
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.82
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	96.81
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.8
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.77
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.75
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.75
PRK08506	472	replicative DNA helicase; Provisional	96.75
PRK09183	259	transposase/IS protein; Provisional	96.71
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.7
PRK05642	234	DNA replication initiation factor; Validated	96.7
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.7
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.7
PF07652	148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	96.68
PRK08760	476	replicative DNA helicase; Provisional	96.67
PRK06749	428	replicative DNA helicase; Provisional	96.65
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.64
PRK06893	229	DNA replication initiation factor; Validated	96.64
PRK08727	233	hypothetical protein; Validated	96.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.61
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.6
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	96.59
COG2403	449	Predicted GTPase [General function prediction only	96.57
PRK06835	329	DNA replication protein DnaC; Validated	96.57
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	96.56
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.56
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	96.55
PRK08006	471	replicative DNA helicase; Provisional	96.55
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.54
PRK05748	448	replicative DNA helicase; Provisional	96.54
PTZ00301	210	uridine kinase; Provisional	96.53
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.53
PRK08939	306	primosomal protein DnaI; Reviewed	96.52
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.52
PRK06904	472	replicative DNA helicase; Validated	96.51
PRK08084	235	DNA replication initiation factor; Provisional	96.5
PF12846	304	AAA_10: AAA-like domain	96.5
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.49
PF02572	172	CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase	96.48
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.46
PRK08840	464	replicative DNA helicase; Provisional	96.46
PRK08181	269	transposase; Validated	96.46
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	96.45
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.41
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	96.39
PLN02200	234	adenylate kinase family protein	96.39
PRK08116	268	hypothetical protein; Validated	96.38
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.38
PRK06321	472	replicative DNA helicase; Provisional	96.36
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	96.36
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.35
PF05729	166	NACHT: NACHT domain	96.33
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.32
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.31
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.3
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.3
PRK09165	497	replicative DNA helicase; Provisional	96.27
PRK07004	460	replicative DNA helicase; Provisional	96.26
PRK06921	266	hypothetical protein; Provisional	96.25
PRK06851	367	hypothetical protein; Provisional	96.24
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.22
PF13173	128	AAA_14: AAA domain	96.22
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.22
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.22
PRK06761	282	hypothetical protein; Provisional	96.21
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.2
COG4240	300	Predicted kinase [General function prediction only	96.11
PRK07933	213	thymidylate kinase; Validated	96.11
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.1
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.1
PLN03046	460	D-glycerate 3-kinase; Provisional	96.1
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.07
PLN02759	637	Formate--tetrahydrofolate ligase	96.05
PRK08118	167	topology modulation protein; Reviewed	96.01
PRK05636	505	replicative DNA helicase; Provisional	96.01
PLN02796	347	D-glycerate 3-kinase	96.01
PRK06217	183	hypothetical protein; Validated	96.0
PRK09302	509	circadian clock protein KaiC; Reviewed	95.97
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	95.96
PRK00131	175	aroK shikimate kinase; Reviewed	95.87
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.87
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.83
TIGR03172	232	probable selenium-dependent hydroxylase accessory	95.81
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.8
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.77
KOG3062	281	consensus RNA polymerase II elongator associated p	95.75
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.74
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	95.73
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.68
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.64
TIGR00235	207	udk uridine kinase. Model contains a number of lon	95.63
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	95.62
PLN02348	395	phosphoribulokinase	95.62
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.59
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.58
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.57
PRK06851	367	hypothetical protein; Provisional	95.56
PLN02924	220	thymidylate kinase	95.55
PRK07773	886	replicative DNA helicase; Validated	95.51
PRK06547	172	hypothetical protein; Provisional	95.51
PRK00698	205	tmk thymidylate kinase; Validated	95.49
PF00004	132	AAA: ATPase family associated with various cellula	95.48
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	95.45
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.43
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.4
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.39
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.35
TIGR00376	637	DNA helicase, putative. The gene product may repre	95.33
PRK12422	445	chromosomal replication initiation protein; Provis	95.31
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.29
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	95.28
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.26
PRK12338	319	hypothetical protein; Provisional	95.25
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.21
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	95.17
PHA02530	300	pseT polynucleotide kinase; Provisional	95.1
PRK13973	213	thymidylate kinase; Provisional	95.1
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.09
COG1855	604	ATPase (PilT family) [General function prediction	95.06
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.06
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	95.04
PRK03731	171	aroL shikimate kinase II; Reviewed	95.03
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.99
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	94.99
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	94.98
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.96
PRK04040	188	adenylate kinase; Provisional	94.94
PRK00149	450	dnaA chromosomal replication initiation protein; R	94.91
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.9
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	94.84
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	94.83
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	94.83
PRK13947	171	shikimate kinase; Provisional	94.82
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	94.82
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.82
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.75
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	94.74
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	94.7
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.7
COG5623	424	CLP1 Predicted GTPase subunit of the pre-mRNA clea	94.69
PRK07261	171	topology modulation protein; Provisional	94.67
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	94.66
PRK13948	182	shikimate kinase; Provisional	94.64
PRK03839	180	putative kinase; Provisional	94.64
PRK07429	327	phosphoribulokinase; Provisional	94.59
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	94.59
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	94.58
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.54
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	94.52
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	94.48
TIGR02746	797	TraC-F-type type-IV secretion system protein TraC.	94.44
PRK13764	602	ATPase; Provisional	94.43
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	94.41
PRK13975	196	thymidylate kinase; Provisional	94.28
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	94.23
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.2
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.17
PRK02496	184	adk adenylate kinase; Provisional	94.16
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	94.16
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	94.15
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	94.11
TIGR03783	829	Bac_Flav_CT_G Bacteroides conjugation system ATPas	94.09
PRK07413	382	hypothetical protein; Validated	94.08
PRK00625	173	shikimate kinase; Provisional	94.05
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	94.03
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	94.01
PRK14531	183	adenylate kinase; Provisional	93.98
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.98
PRK14528	186	adenylate kinase; Provisional	93.94
PRK14527	191	adenylate kinase; Provisional	93.92
PRK13721	844	conjugal transfer ATP-binding protein TraC; Provis	93.91
KOG1969	877	consensus DNA replication checkpoint protein CHL12	93.88
PRK13946	184	shikimate kinase; Provisional	93.85
PRK04182	180	cytidylate kinase; Provisional	93.84
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.83
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	93.83
COG0857	354	Pta BioD-like N-terminal domain of phosphotransace	93.81
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	93.8
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	93.75
PRK13949	169	shikimate kinase; Provisional	93.72
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	93.71
PRK00411	394	cdc6 cell division control protein 6; Reviewed	93.71
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	93.71
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.65
CHL00095	821	clpC Clp protease ATP binding subunit	93.64
PRK11545	163	gntK gluconate kinase 1; Provisional	93.64
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	93.62
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	93.61
PRK14734	200	coaE dephospho-CoA kinase; Provisional	93.6
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	93.59
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	93.58
CHL00181	287	cbbX CbbX; Provisional	93.57
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	93.57
PRK13695	174	putative NTPase; Provisional	93.53
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	93.53
PRK14730	195	coaE dephospho-CoA kinase; Provisional	93.53
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	93.52
PRK10536	262	hypothetical protein; Provisional	93.46
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	93.46
PLN03025	319	replication factor C subunit; Provisional	93.46
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	93.45
PRK13976	209	thymidylate kinase; Provisional	93.45
KOG1805	1100	consensus DNA replication helicase [Replication, r	93.36
PLN03210	1153	Resistant to P. syringae 6; Provisional	93.33
PRK14532	188	adenylate kinase; Provisional	93.31
PRK14530	215	adenylate kinase; Provisional	93.29
COG3911	183	Predicted ATPase [General function prediction only	93.29
PRK12337	475	2-phosphoglycerate kinase; Provisional	93.27
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.26
PRK14086	617	dnaA chromosomal replication initiation protein; P	93.26
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	93.25
PLN02422	232	dephospho-CoA kinase	93.24
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	93.23
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	93.2
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.17
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	93.12
PTZ00451	244	dephospho-CoA kinase; Provisional	93.08
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.07
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.01
PRK13833	323	conjugal transfer protein TrbB; Provisional	92.98
PRK14087	450	dnaA chromosomal replication initiation protein; P	92.97
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	92.94
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	92.94
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	92.92
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	92.9
TIGR03754	643	conj_TOL_TraD conjugative coupling factor TraD, TO	92.89
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	92.85
PRK07413	382	hypothetical protein; Validated	92.84
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	92.81
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	92.76
PF02702	211	KdpD: Osmosensitive K+ channel His kinase sensor d	92.75
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	92.72
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	92.65
COG0523	323	Putative GTPases (G3E family) [General function pr	92.64
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	92.55
PRK00279	215	adk adenylate kinase; Reviewed	92.54
PRK09112	351	DNA polymerase III subunit delta'; Validated	92.54
PRK12402	337	replication factor C small subunit 2; Reviewed	92.48
PF02399	824	Herpes_ori_bp: Origin of replication binding prote	92.42
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	92.41
KOG2878	282	consensus Predicted kinase [General function predi	92.37
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	92.35
COG0645	170	Predicted kinase [General function prediction only	92.34
PTZ00088	229	adenylate kinase 1; Provisional	92.34
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	92.33
PRK14733	204	coaE dephospho-CoA kinase; Provisional	92.33
TIGR00101	199	ureG urease accessory protein UreG. This model rep	92.3
COG3910	233	Predicted ATPase [General function prediction only	92.29
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	92.28
cd01128	249	rho_factor Transcription termination factor rho is	92.23
PF00580	315	UvrD-helicase: UvrD/REP helicase N-terminal domain	92.21
PLN02165	334	adenylate isopentenyltransferase	92.2
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	92.18
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	92.1
PRK14738	206	gmk guanylate kinase; Provisional	92.09
PRK01184	184	hypothetical protein; Provisional	92.08
PRK09376	416	rho transcription termination factor Rho; Provisio	92.07
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	92.06
PRK13891	852	conjugal transfer protein TrbE; Provisional	92.04
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	92.02
PRK05057	172	aroK shikimate kinase I; Reviewed	92.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	91.96
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	91.93
cd00881	189	GTP_translation_factor GTP translation factor fami	91.91
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	91.89
smart00487	201	DEXDc DEAD-like helicases superfamily.	91.88
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	91.86
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	91.85
COG1159	298	Era GTPase [General function prediction only]	91.77
PRK00440	319	rfc replication factor C small subunit; Reviewed	91.66
PRK00300	205	gmk guanylate kinase; Provisional	91.63
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	91.62
PRK00023	225	cmk cytidylate kinase; Provisional	91.62
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	91.54
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.53
PRK08356	195	hypothetical protein; Provisional	91.53
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	91.52
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	91.52
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	91.49
PLN02748	468	tRNA dimethylallyltransferase	91.49
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.45
TIGR03744	893	traC_PFL_4706 conjugative transfer ATPase, PFL_470	91.41
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	91.4
PF07088	484	GvpD: GvpD gas vesicle protein; InterPro: IPR00978	91.39
PRK10865	857	protein disaggregation chaperone; Provisional	91.37
COG1110	1187	Reverse gyrase [DNA replication, recombination, an	91.35
PLN02318	656	phosphoribulokinase/uridine kinase	91.33
COG1160	444	Predicted GTPases [General function prediction onl	91.19
CHL00122	870	secA preprotein translocase subunit SecA; Validate	91.11
PRK08099	399	bifunctional DNA-binding transcriptional repressor	91.1
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	91.06
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	91.05
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	91.04

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.96  E-value=3.4e-28  Score=193.70  Aligned_cols=155  Identities=46%  Similarity=0.762  Sum_probs=108.6

Q ss_pred             eeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973            7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP   86 (168)
Q Consensus         7 ~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~   86 (168)
                      +.+.++.++++..+.    ..++..++|+|+|+|||+||||+|+|||..||+ .|+||++||+|+++|+++.+||.....
T Consensus        87 ~~~~~~~~~~~~~~~----~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~-~G~rVlLID~D~qgps~~~~lg~~~~~  161 (369)
T PRK11670         87 LSHNIATLKRVNNQP----GVNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAKVGILDADIYGPSIPTMLGAEDQR  161 (369)
T ss_pred             Eeeehhhhccccccc----cCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCCcchhcCCcccC
Confidence            345566666654433    256668999999999999999999999999999 999999999999999999999875432


Q ss_pred             -CccccCceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHH-hhcCCCCcEEEEeCCCCCCHHHHHHHhhccc
Q 030973           87 -EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSR-EVDWGNLDILVIDMPPGTGDAQLTTTQTLQL  164 (168)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~~  164 (168)
                       ...+...+.+....++...+.+.+........+.+......+.+++. .+. ++||||||||||++++..+.+.+.++.
T Consensus       162 ~~~~~~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~aa  240 (369)
T PRK11670        162 PTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNIPV  240 (369)
T ss_pred             CcccCCceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhccC
Confidence             11122223332223333333333322223334455555567777774 444 889999999999999988888787777


Q ss_pred             CCC
Q 030973          165 SGI  167 (168)
Q Consensus       165 ~~~  167 (168)
                      |++
T Consensus       241 d~v  243 (369)
T PRK11670        241 TGA  243 (369)
T ss_pred             CeE
Confidence            765

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4e-28  Score=181.53  Aligned_cols=149  Identities=49%  Similarity=0.791  Sum_probs=131.6

Q ss_pred             cccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceee-
Q 030973           18 AAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP-   96 (168)
Q Consensus        18 ~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~-   96 (168)
                      .++......+.+-.++|+|.|+||||||||+++|||+.||. .|++|.++|.|...|++..++|.+.+.-........+ 
T Consensus        34 ~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv  112 (300)
T KOG3022|consen   34 PDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPV  112 (300)
T ss_pred             CCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhc-CCCcEEEEeecccCCCchhhcCCCCceeeecCCCceee
Confidence            33444444677788999999999999999999999999999 9999999999999999999999998875555555555 


Q ss_pred             cccCCeeeeecCccCCC-CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhccc-CCC
Q 030973           97 IENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQL-SGI  167 (168)
Q Consensus        97 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~~-~~~  167 (168)
                      ...+++.+++.|++..+ +....|+++.....+.+++....|.+.||+|||||||.+|+++.+.+.+.. +|+
T Consensus       113 ~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gA  185 (300)
T KOG3022|consen  113 VVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGA  185 (300)
T ss_pred             eecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCce
Confidence            66789999999999887 667889999999999999999999999999999999999999999999987 764

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.94  E-value=6.1e-27  Score=180.19  Aligned_cols=138  Identities=20%  Similarity=0.249  Sum_probs=110.3

Q ss_pred             CceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccccc
Q 030973            3 NSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI   82 (168)
Q Consensus         3 ~~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~   82 (168)
                      +..++.|.||.+|+++.+...    ++..++|+|+|++||+||||+|.|||..+|+ .|+|||+||+|++++.++..|+.
T Consensus        79 ~~~~~~e~~~~l~~~l~~~~~----~~~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D~~~~~~~~~~~~  153 (274)
T TIGR03029        79 PFSPQVEALRALRSQLMLRWF----SEGRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKL  153 (274)
T ss_pred             CCCHHHHHHHHHHHHhhhhcc----CCCCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCccHHHhcCC
Confidence            345678999999999999864    3348999999999999999999999999999 99999999999999999999998


Q ss_pred             CCCCCcccc-------Cceee-cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973           83 DQKPEVTKD-------MKMVP-IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus        83 ~~~~~~~~~-------~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      +...++.+.       +.+.. ....+++++|.|........     ......+.++++.++ +.||||||||||..
T Consensus       154 ~~~~gl~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~-----~~~~~~~~~~l~~l~-~~yD~ViiD~pp~~  224 (274)
T TIGR03029       154 SEQRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQE-----LLARPAFTDLLNKVM-GDYDVVIVDTPSAE  224 (274)
T ss_pred             CCCCCHHHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCcc
Confidence            877776552       11222 23468999998865432221     122357888899998 89999999999975

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.94  E-value=1.2e-26  Score=171.90  Aligned_cols=145  Identities=24%  Similarity=0.304  Sum_probs=109.0

Q ss_pred             CceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccccc
Q 030973            3 NSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI   82 (168)
Q Consensus         3 ~~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~   82 (168)
                      +.+.+.|.++.+|+++.........++.+++|+|+|+|||+||||+++|||+.||+..|+|||+||+|++.++++..++.
T Consensus         7 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~   86 (207)
T TIGR03018         7 PRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGL   86 (207)
T ss_pred             CCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCC
Confidence            44567789999999988544322334568999999999999999999999999996259999999999999999999998


Q ss_pred             CCCCCcccc---------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCC--cEEEEeCCCCC
Q 030973           83 DQKPEVTKD---------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL--DILVIDMPPGT  151 (168)
Q Consensus        83 ~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~y--D~IiiD~p~~~  151 (168)
                      ....++.+.         +.+......+++++|.+........     ......+.++++.++ ++|  |||||||||++
T Consensus        87 ~~~~~l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~~-----~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~  160 (207)
T TIGR03018        87 EAEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTE-----LLASQRMRSLLHELA-RRYPDRIIIIDTPPLL  160 (207)
T ss_pred             CCCCCHHHHHcCCCCCHHHHhccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hhCCCCEEEEECCCCc
Confidence            876665441         1122223468899987744322111     123467888888888 778  99999999998


Q ss_pred             CH
Q 030973          152 GD  153 (168)
Q Consensus       152 ~~  153 (168)
                      +.
T Consensus       161 ~~  162 (207)
T TIGR03018       161 VF  162 (207)
T ss_pred             ch
Confidence            53

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.93  E-value=7e-26  Score=173.20  Aligned_cols=152  Identities=41%  Similarity=0.592  Sum_probs=118.8

Q ss_pred             eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      ..+.|.++.++.++++.....  .+..++|+|+|+|||+||||+++|||..+|+ .|+||++||+|..+|+++.+|+...
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~  109 (265)
T COG0489          33 STASEALRALRTNLKFAKVLR--KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLEN  109 (265)
T ss_pred             chhhhhhhhhhcchhhhhccc--cccceEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCcEEEEeCcCCCCchHHHhCCCC
Confidence            345677888888766665432  3458999999999999999999999999999 9999999999999999999999976


Q ss_pred             CCCccc---cCceee---cc-cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHH
Q 030973           85 KPEVTK---DMKMVP---IE-NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT  157 (168)
Q Consensus        85 ~~~~~~---~~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~  157 (168)
                      ..++.+   ...+.+   .. ...+++++.+.     ....+++......+.+++.+++|..||||||||||+.++..+.
T Consensus       110 ~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~-----~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~  184 (265)
T COG0489         110 LPGLTELLAGEALEPVIQHDGIKVLSILPLGP-----VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT  184 (265)
T ss_pred             CCCcccccCCCccccceecCccceEEEEecCC-----CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH
Confidence            443332   111222   22 34556666553     4455667888999999999999666999999999999999998


Q ss_pred             HHhhccc
Q 030973          158 TTQTLQL  164 (168)
Q Consensus       158 ~~~~~~~  164 (168)
                      .++.+.-
T Consensus       185 i~~~~~~  191 (265)
T COG0489         185 VLQRIPD  191 (265)
T ss_pred             HHhccCC
Confidence            8887763

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.93  E-value=5.6e-26  Score=167.88  Aligned_cols=129  Identities=23%  Similarity=0.312  Sum_probs=100.9

Q ss_pred             eecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC-CCC
Q 030973            9 TRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-KPE   87 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~-~~~   87 (168)
                      |.||.+|+++.+....      +|+|+|+|.|||+||||++.|||..+|+ .|+|||+||+|++.+.++..++... ..+
T Consensus         1 ~~~~~l~~~l~~~~~~------~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~~l~~~~~~~~~~~~   73 (204)
T TIGR01007         1 EYYNAIRTNIQFSGAE------IKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKITG   73 (204)
T ss_pred             ChHHHHHHHHhhhcCC------CcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCChhHHHHhCCCCCCCC
Confidence            6799999999988754      8999999999999999999999999999 9999999999999999888887665 444


Q ss_pred             cccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973           88 VTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus        88 ~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                      +.+.        ..+......++++++.+...+....     ......+.++++.++ +.||||||||||.
T Consensus        74 l~~~l~~~~~l~~~i~~~~~~~l~~l~~g~~~~~~~~-----~l~~~~l~~~l~~l~-~~yD~ViiD~pp~  138 (204)
T TIGR01007        74 LTNFLSGTTDLSDAICDTNIENLFVITSGPVPPNPTE-----LLQSSNFKTLIETLR-KYFDYIIIDTPPI  138 (204)
T ss_pred             HHHHhcCCCCHHHhcccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCc
Confidence            4331        1122223368899988754322111     123456788888888 8999999999994

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PRK11519 tyrosine kinase; Provisional

Probab=99.92  E-value=2.6e-25  Score=190.43  Aligned_cols=135  Identities=16%  Similarity=0.242  Sum_probs=113.0

Q ss_pred             eeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973            6 RIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus         6 ~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      .+.|.+|.+|+++.|....    ...++|+|+|.+||+||||++.|||..+|+ .|+|||+||+|+++|+++.+|+....
T Consensus       505 ~~~Ea~r~lrt~l~~~~~~----~~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dlr~~~~~~~~~~~~~  579 (719)
T PRK11519        505 LAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNV  579 (719)
T ss_pred             HHHHHHHHHHHHhhhhccC----CCceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCcHHHHhCCCCC
Confidence            4569999999999997743    347999999999999999999999999999 99999999999999999999998887


Q ss_pred             CCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973           86 PEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus        86 ~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      .++.+.        ..+......+++++|.|..++.+..     ......+.++++.++ .+||||||||||.+
T Consensus       580 ~gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~e-----ll~s~~~~~ll~~l~-~~yD~ViiDtpP~~  647 (719)
T PRK11519        580 NGLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSE-----LLMSERFAELVNWAS-KNYDLVLIDTPPIL  647 (719)
T ss_pred             CCHHHHhCCCCCHHHhecccCcCCEEEEeCCCCCCCHHH-----HhhHHHHHHHHHHHH-hcCCEEEEeCCCcc
Confidence            777652        2234445589999999865544332     345678999999999 89999999999965

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.92  E-value=4.2e-25  Score=190.45  Aligned_cols=140  Identities=14%  Similarity=0.077  Sum_probs=112.1

Q ss_pred             ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973            4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus         4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      ...+.|.+|.+|+++.+...+    ...++|+|+|.+||+||||+|+|||+.+|+ .|+|||+||+|+++|+++..|+..
T Consensus       523 ~s~~~Ea~r~lr~~l~~~~~~----~~~kvi~vts~~~G~GKTt~a~nLA~~lA~-~g~rvLlID~D~~~~~l~~~~~~~  597 (754)
T TIGR01005       523 RPVAEEELRVKEEAVAEAKSV----AEPEVVETQRPRPVLGKSDIEANAAALIAS-GGKRALLIDADGRKAALSQILVAR  597 (754)
T ss_pred             CCcchHHHHHHHHHHhhhccC----CCceEEEeecCCCCCChhHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHhCCc
Confidence            356789999999999988754    347999999999999999999999999999 999999999999999999999988


Q ss_pred             CCCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973           84 QKPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA  154 (168)
Q Consensus        84 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~  154 (168)
                      ...++.+.        ..+......+++++|.|.....+..     ......+.++++.++ +.||||||||||.++..
T Consensus       598 ~~~gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~-----ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~  670 (754)
T TIGR01005       598 EVSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITE-----LLASPAMFSLVIHAR-LYSDCVVVDVGTADPVR  670 (754)
T ss_pred             ccCChHHHHcCCccHHHHhccCCCCCeeEecCCCCCCCHHH-----HhccHHHHHHHHHHH-hhCCEEEEcCCCcchhH
Confidence            77766542        2233344578999998854332221     123456788888888 89999999999987533

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.92  E-value=4.9e-25  Score=188.96  Aligned_cols=137  Identities=15%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      ..+.|.+|.+|+++.|...+    ...++|+|+|.+||+||||+|+|||..+|. .|+|||+||+|+++|.++..|+...
T Consensus       509 s~~~Ea~r~lrt~l~~~~~~----~~~kvI~vtS~~~g~GKTtva~nLA~~la~-~G~rVLlID~D~r~~~l~~~~~~~~  583 (726)
T PRK09841        509 DSAVEAVRALRTSLHFAMME----TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN  583 (726)
T ss_pred             CHHHHHHHHHHHHhhhhccC----CCCeEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCcHHHHcCCCC
Confidence            34569999999999997643    348999999999999999999999999999 9999999999999999999999887


Q ss_pred             CCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973           85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus        85 ~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      ..++.+.        +.+.+....+++++|.|..++.+..     ......+.++++.++ ++||||||||||.+.
T Consensus       584 ~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~e-----ll~~~~~~~ll~~l~-~~yD~IIIDtPP~~~  653 (726)
T PRK09841        584 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSE-----LLMRDRMRQLLEWAN-DHYDLVIVDTPPMLA  653 (726)
T ss_pred             CCCHHHHhCCCCCHHHheeccCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCccc
Confidence            7776552        2233444578999999865543332     233468899999998 899999999999763

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.91  E-value=1.9e-24  Score=174.30  Aligned_cols=129  Identities=25%  Similarity=0.268  Sum_probs=90.4

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC------ccc-----------
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE------VTK-----------   90 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~------~~~-----------   90 (168)
                      +.++++|+|.|.|||+||||+|+|||..||+ .|+|||+||+|+|+ +++..||..+...      +.+           
T Consensus       118 ~~~~~vIav~n~KGGvGKTTta~nLA~~LA~-~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~  195 (405)
T PRK13869        118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPL  195 (405)
T ss_pred             CCCceEEEEEcCCCCCCHHHHHHHHHHHHHh-cCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCH
Confidence            4468999999999999999999999999999 99999999999985 7888888654321      110           


Q ss_pred             cCceeecccCCeeeeecCccCCCCCC--------cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973           91 DMKMVPIENYGVKCMSMGFLVPSSSP--------VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT  159 (168)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~  159 (168)
                      ...+.+...++++++|.+.....-..        ...........+.+.++.++ ++||||||||||+++..+++++
T Consensus       196 ~~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~~al  271 (405)
T PRK13869        196 RDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTLSGL  271 (405)
T ss_pred             HHheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHHHHH
Confidence            01223344568888886532110000        00011112245778888888 8999999999999887766554

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.90  E-value=1.4e-23  Score=159.04  Aligned_cols=121  Identities=30%  Similarity=0.429  Sum_probs=89.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc-------CceeecccCCee
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------MKMVPIENYGVK  103 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~  103 (168)
                      ++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|+++++++.++|.+.. .++.+.       .........+++
T Consensus         1 ~ii~v~~~KGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   79 (251)
T TIGR01969         1 RIITIASGKGGTGKTTITANLGVALAK-LGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVK   79 (251)
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEE
Confidence            489999999999999999999999999 99999999999998899999987653 222221       111112235788


Q ss_pred             eeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      ++|.+......      .......+.++++.++ ++||||||||||+++.....++.
T Consensus        80 ~lp~~~~~~~~------~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~l~  129 (251)
T TIGR01969        80 VIPAGVSLEGL------RKADPDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTALA  129 (251)
T ss_pred             EEeCCCCHHHH------hhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHHHH
Confidence            88865321110      0112456778888887 89999999999999887776554

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK10037 cell division protein; Provisional

Probab=99.90  E-value=6.6e-24  Score=161.41  Aligned_cols=126  Identities=13%  Similarity=0.149  Sum_probs=83.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc-------c-CceeecccC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK-------D-MKMVPIENY  100 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~-------~-~~~~~~~~~  100 (168)
                      |++|+|.|.|||+||||+|+|||..|++ .|+|||+||+|+|+ ++...||.....  ++.+       . +.+.+ ...
T Consensus         1 ~~~iav~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   77 (250)
T PRK10037          1 MAILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLR-YTS   77 (250)
T ss_pred             CcEEEEecCCCCccHHHHHHHHHHHHHh-cCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhcc-ccC
Confidence            5799999999999999999999999999 99999999999986 667777765322  1111       1 11122 236


Q ss_pred             CeeeeecCccCCCCCCcccCch-hHHHHHHHHHHhhcC-CCCcEEEEeCCCCCCHHHHHHHh
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGP-MVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      +++++|.+......... .... .....+.+.++.++. ++||||||||||+++..+..++.
T Consensus        78 ~l~iip~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al~  138 (250)
T PRK10037         78 QLDLLPFGQLSIEEQEN-PQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLS  138 (250)
T ss_pred             CeEEEcCCCCCHHHHHH-HHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHHH
Confidence            78888875221111000 0000 011235566666642 47999999999998877665544

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.90  E-value=8.9e-24  Score=169.25  Aligned_cols=130  Identities=25%  Similarity=0.226  Sum_probs=90.1

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC-CCCCCCcccccccCCCCCcc------c---------c
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKPEVT------K---------D   91 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~-D~~~~~l~~~~~~~~~~~~~------~---------~   91 (168)
                      .+++++|+|.|.||||||||+|+|||..||+ .|+|||+||+ |+|+ +++.+||..+...+.      +         .
T Consensus       103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~-~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~  180 (387)
T PHA02519        103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAE  180 (387)
T ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchH
Confidence            4458999999999999999999999999999 9999999996 9987 667777765432111      1         1


Q ss_pred             CceeecccCCeeeeecCccCCCC-------CCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973           92 MKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus        92 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      ..+.+...++++++|.+......       .............+.+.++.+. ++||||||||||+++..+.+++-
T Consensus       181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~nAL~  255 (387)
T PHA02519        181 YAIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTINVVC  255 (387)
T ss_pred             hheecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHHHHH
Confidence            12233445789999876321100       0000000011245777788887 89999999999999877665543

>CHL00175 minD septum-site determining protein; Validated

Probab=99.90  E-value=4.5e-23  Score=159.26  Aligned_cols=125  Identities=19%  Similarity=0.343  Sum_probs=93.2

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP   96 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~   96 (168)
                      .++.+++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|++.++++.+|+.....  ++.+.        ..+..
T Consensus        11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~-~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~   89 (281)
T CHL00175         11 SATMSRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR   89 (281)
T ss_pred             cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence            45568999999999999999999999999999 999999999999988999999887532  22221        11112


Q ss_pred             -cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCC-CCcEEEEeCCCCCCHHHHHHHh
Q 030973           97 -IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus        97 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                       ...++++++|.+...   ...    ......+.++++.++ . .||||||||||+++.....++.
T Consensus        90 ~~~~~~l~~l~~~~~~---~~~----~~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~~~~~~~l~  147 (281)
T CHL00175         90 DKRWKNLSLLAISKNR---QRY----NVTRKNMNMLVDSLK-NRGYDYILIDCPAGIDVGFINAIA  147 (281)
T ss_pred             cCCCCCeEEEeCCCch---hhc----cCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHH
Confidence             224678888875321   111    112346888888887 6 8999999999999877665553

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=99.90  E-value=2.8e-23  Score=151.23  Aligned_cols=123  Identities=24%  Similarity=0.313  Sum_probs=95.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCc--cc---cCc------eeeccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV--TK---DMK------MVPIEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~--~~---~~~------~~~~~~   99 (168)
                      .++|.++|+|||+||||+++|++..||+ .|+||++||+|..-.+|...+|++...-+  .+   ..+      +.....
T Consensus         2 ~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~   80 (272)
T COG2894           2 ARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL   80 (272)
T ss_pred             ceEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence            6899999999999999999999999999 99999999999999999999998876322  11   111      223334


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      .++.++|+.+.-..+       ....+.+..++++|+...|||||||||+|+......++..
T Consensus        81 ~nL~lLPAsQtrdKd-------alt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~  135 (272)
T COG2894          81 ENLFLLPASQTRDKD-------ALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYF  135 (272)
T ss_pred             CceEecccccccCcc-------cCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhhc
Confidence            678888776432211       2456888999999886789999999999997776655443

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.90  E-value=1.4e-23  Score=168.38  Aligned_cols=131  Identities=24%  Similarity=0.214  Sum_probs=89.2

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC-CCCCCCcccccccCCCC------Cccc---------
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKP------EVTK---------   90 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~-D~~~~~l~~~~~~~~~~------~~~~---------   90 (168)
                      .+..+++|+|.|.||||||||+|+|||..||+ .|+|||+||+ |+|+ +++..||..+..      ++.+         
T Consensus       102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~-~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~  179 (388)
T PRK13705        102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDA  179 (388)
T ss_pred             CCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-cCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCch
Confidence            34568999999999999999999999999999 9999999996 9987 566677654321      1110         


Q ss_pred             cCceeecccCCeeeeecCccCCCC-------CCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973           91 DMKMVPIENYGVKCMSMGFLVPSS-------SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      ...+.+...++++++|.+......       .............+.+.++.++ ++||||||||||+++..+.+++.
T Consensus       180 ~~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~nal~  255 (388)
T PRK13705        180 TYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTINVVC  255 (388)
T ss_pred             hhheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHHHHH
Confidence            112333445789999875321100       0000000011235677778887 89999999999998777665543

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.89  E-value=5.2e-23  Score=158.35  Aligned_cols=118  Identities=26%  Similarity=0.256  Sum_probs=82.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeeccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~   99 (168)
                      ||+|+|+ +||||||||+++|||..||+ .|+|||+||+|++.++...++|.....++.+           ...+.....
T Consensus         1 ~~~iav~-gKGGVGKTT~a~nLA~~La~-~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~   78 (273)
T PRK13232          1 MRQIAIY-GKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGF   78 (273)
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHHHHHh-hCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence            4799999 99999999999999999999 9999999999999988887776433333222           111222334


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      .+++++|.+..... ......+......+.+.++.+. ++|||||||||+++.
T Consensus        79 ~~i~~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~  129 (273)
T PRK13232         79 GDIKCVESGGPEPG-VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVV  129 (273)
T ss_pred             CCeEEEeCCCCCCC-CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCee
Confidence            68889987642221 1111222222335666677666 889999999988763

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.89  E-value=1e-22  Score=156.36  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=90.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc--------cCceee-ccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK--------DMKMVP-IEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~--------~~~~~~-~~~   99 (168)
                      +++|+|+|+|||+||||+|+|||+.|++ .|+||++||+|++.++++.+||.+...  ++.+        .+.+.. ...
T Consensus         2 ~kviav~s~KGGvGKTt~a~nlA~~la~-~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (270)
T PRK10818          2 ARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT   80 (270)
T ss_pred             ceEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence            6899999999999999999999999999 999999999999988999999876432  2211        011111 124


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      .+++++|.+....  .     .......+.++++.++...||||||||||+++...+.++.
T Consensus        81 ~~~~~lp~~~~~~--~-----~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l~  134 (270)
T PRK10818         81 ENLYILPASQTRD--K-----DALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALY  134 (270)
T ss_pred             CCEEEecCCCCcc--h-----hhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHHH
Confidence            6788888764321  1     1123345677888776247999999999999887776653

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.89  E-value=4.2e-23  Score=156.24  Aligned_cols=127  Identities=24%  Similarity=0.257  Sum_probs=87.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc-------CceeecccCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD-------MKMVPIENYG  101 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~-------~~~~~~~~~~  101 (168)
                      +++|+|+|+|||+||||+|+|||..||+ .|+|||+||+|+++ +++..++.....  ++.+.       .........+
T Consensus         1 m~iI~v~s~KGGvGKTt~a~nla~~la~-~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   78 (246)
T TIGR03371         1 MKVIAIVGVKGGVGKTTLTANLASALKL-LGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDG   78 (246)
T ss_pred             CcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCC
Confidence            5799999999999999999999999999 99999999999986 577778765432  12111       1111122467


Q ss_pred             eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ++++|.+..........  .......++++++.++...||||||||||+++.....++..
T Consensus        79 l~~ip~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~l~~  136 (246)
T TIGR03371        79 VLFLPFGDLSADEREAY--QAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQALAA  136 (246)
T ss_pred             eEEecCCCCcHHHHHHH--hhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHHHHh
Confidence            88887653321111100  01123567778888763346999999999988877665543

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.89  E-value=2.8e-23  Score=166.91  Aligned_cols=129  Identities=25%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------------
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------------   90 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------------   90 (168)
                      +..+++|+|+|.|||+||||+|+|||..|++ .|+|||+||+|+|+ +++..||..+..++.+                 
T Consensus       101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l  178 (387)
T TIGR03453       101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPL  178 (387)
T ss_pred             CCCceEEEEEccCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCH
Confidence            4558999999999999999999999999999 99999999999975 7888888654322110                 


Q ss_pred             cCceeecccCCeeeeecCccCCCCC--------CcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973           91 DMKMVPIENYGVKCMSMGFLVPSSS--------PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT  159 (168)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~  159 (168)
                      ...+.+....+++++|.+.....-.        ............+.+.++.+. ++||||||||||+++..+.+++
T Consensus       179 ~~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~al  254 (387)
T TIGR03453       179 SEIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLSAL  254 (387)
T ss_pred             HhhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHHHH
Confidence            0122233446888888653210000        000000111245777888888 8999999999999877655543

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.89  E-value=2.4e-22  Score=158.04  Aligned_cols=123  Identities=28%  Similarity=0.388  Sum_probs=94.8

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcc--cc------------Cc
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--KD------------MK   93 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~--~~------------~~   93 (168)
                      ...+++|+|+|+|||+||||+|+|||+.+++ .|+||++||+|++.+++..+||.+..+++.  +.            ..
T Consensus        90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~-~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~  168 (322)
T TIGR03815        90 PARGVVVAVIGGRGGAGASTLAAALALAAAR-HGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD  168 (322)
T ss_pred             CCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence            4458999999999999999999999999999 999999999999999999999887655432  10            01


Q ss_pred             eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973           94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ..+. ..++++++.+....        .......+.++++.++ +.||||||||||+++.....++..
T Consensus       169 ~~~~-~~~l~vl~~~~~~~--------~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~L~~  226 (322)
T TIGR03815       169 ALPR-RGGLSVLSWGRAVG--------AALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETALES  226 (322)
T ss_pred             hCCC-cCCeEEEecCCCCc--------CCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHHHHH
Confidence            1122 35788887654321        1133567888888888 899999999999998876665544

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.89  E-value=3.6e-23  Score=155.08  Aligned_cols=129  Identities=25%  Similarity=0.252  Sum_probs=94.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC--CCccc-------cCceeecccCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTK-------DMKMVPIENYG  101 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~--~~~~~-------~~~~~~~~~~~  101 (168)
                      |++|++.|.|||+||||+++|||+.|++ .|++|++||+||++ .+...||++..  .++..       .....-....+
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g   78 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDG   78 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCC
Confidence            6899999999999999999999999999 99999999999987 88888987753  33321       11222334579


Q ss_pred             eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhc-CCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      +.++|.|.....+......-......+.+.+..+. ...||+|||||||+.+.....++..
T Consensus        79 ~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~  139 (243)
T PF06564_consen   79 VDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAA  139 (243)
T ss_pred             CEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHh
Confidence            99999986654333211111112456666666666 4789999999999988776666553

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.89  E-value=1.7e-22  Score=150.22  Aligned_cols=115  Identities=27%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeeccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN   99 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~   99 (168)
                      ++|+|++ |||+||||+++|||..||+ .|+|||+||+|++.+....+++.....++.+            ...+.....
T Consensus         1 ~~iav~g-KGGvGKTt~~~nLA~~la~-~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (212)
T cd02117           1 RQIAIYG-KGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGF   78 (212)
T ss_pred             CEEEEEC-CCcCcHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence            4789985 9999999999999999999 9999999999999876666555443333221            112223345


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHH-HHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      .+++++|.+...+.... ...+.... ..++ .++.+. ++||||||||++.+
T Consensus        79 ~~l~vlp~~~~~~~~~~-~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~  128 (212)
T cd02117          79 GGVKCVESGGPEPGVGC-AGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDV  128 (212)
T ss_pred             CCcEEEeCCCCCCCccc-CCcchhhHHHHHH-hccccc-cCCCEEEEecCCCc
Confidence            78999998754433221 11211111 2233 555666 89999999997755

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.89  E-value=1.4e-22  Score=154.22  Aligned_cols=125  Identities=27%  Similarity=0.361  Sum_probs=98.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC-ccc--------cCceeecccCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTK--------DMKMVPIENYG  101 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~-~~~--------~~~~~~~~~~~  101 (168)
                      +++|+|.|+|||+||||+++||+..+++..|++|++||+|...++++.+||..+.+. +.+        .+.+......+
T Consensus         2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g   81 (262)
T COG0455           2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG   81 (262)
T ss_pred             CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence            789999999999999999999955555548888899999999999999999999665 544        12233333489


Q ss_pred             eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhc
Q 030973          102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL  162 (168)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~  162 (168)
                      ++++|.+......      .....+.++.+++++. +.|||||||||+|++..++.+....
T Consensus        82 l~vipg~~~~~~~------~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~~~~~~~s  135 (262)
T COG0455          82 LYVLPGGSGLEDL------AKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDTLSFILSS  135 (262)
T ss_pred             EEEeeCCCChHHH------hhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHHHHHHHhc
Confidence            9999877332221      1345678889999998 8999999999999999887766543

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.89  E-value=1.9e-22  Score=153.68  Aligned_cols=121  Identities=25%  Similarity=0.375  Sum_probs=89.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee-ccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~~   99 (168)
                      +++|+|+|.|||+||||+|+|||..|++ .|+||++||+|++.++++.+|+.....  ++.+.        ..+.. ...
T Consensus         1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~-~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   79 (261)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL   79 (261)
T ss_pred             CeEEEEecCCCCccHHHHHHHHHHHHHH-cCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCC
Confidence            4799999999999999999999999999 999999999999988999999876432  22110        01111 123


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      .+++++|.+....   .    .......+.++++.++ +.||||||||||+++.....++.
T Consensus        80 ~~l~~l~~~~~~~---~----~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~l~  132 (261)
T TIGR01968        80 KNLYLLPASQTRD---K----DAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNAVA  132 (261)
T ss_pred             CCeEEEeCCCchh---h----hhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHHHH
Confidence            5788888763211   1    1122346788888888 89999999999999877655543

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.89  E-value=8.4e-23  Score=155.95  Aligned_cols=126  Identities=29%  Similarity=0.388  Sum_probs=82.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Cccc----------cCceeecc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTK----------DMKMVPIE   98 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~----------~~~~~~~~   98 (168)
                      +++|+|+|.|||+||||+|.|||.+||+..|+|||+||+|||+ ++...++.....  ....          ...... .
T Consensus         2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   79 (259)
T COG1192           2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV-V   79 (259)
T ss_pred             CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-C
Confidence            7899999999999999999999999994267999999999995 778888876550  0000          011111 3


Q ss_pred             cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973           99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT  159 (168)
Q Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~  159 (168)
                      ..+++++|.....................+.++++.+. ++||||||||||+++....+++
T Consensus        80 ~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~l~~nal  139 (259)
T COG1192          80 IEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGVLTLNAL  139 (259)
T ss_pred             CCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhHHHHHHH
Confidence            45677777653222100000000112234455555555 7999999999999866655444

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.88  E-value=1.9e-22  Score=144.91  Aligned_cols=87  Identities=69%  Similarity=1.106  Sum_probs=67.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP  112 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  112 (168)
                      +|+|+|+|||+||||+|.|||..+|+ .|+||++||+|+++++++..+.                          +    
T Consensus         1 vi~v~s~kgG~GKTt~a~~LA~~la~-~g~~vllvD~D~q~~~~~~~~~--------------------------~----   49 (169)
T cd02037           1 VIAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPSIPKMWR--------------------------G----   49 (169)
T ss_pred             CEEEecCCCcCChhHHHHHHHHHHHH-cCCcEEEEeCCCCCCCchHHHh--------------------------C----
Confidence            58999999999999999999999999 9999999999999976554310                          0    


Q ss_pred             CCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHH
Q 030973          113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT  159 (168)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~  159 (168)
                               ......++.+++.+..+.||||||||||++++..+.+.
T Consensus        50 ---------~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~   87 (169)
T cd02037          50 ---------PMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLA   87 (169)
T ss_pred             ---------cchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHH
Confidence                     01123455555554336899999999999988776544

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.88  E-value=1e-22  Score=156.77  Aligned_cols=118  Identities=25%  Similarity=0.296  Sum_probs=79.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-----------Cceeeccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~   99 (168)
                      +++|+|. +||||||||+|.|||..||+..|+|||+||+|+|+++...++|.....++.+.           ..+.....
T Consensus         2 ~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~   80 (275)
T PRK13233          2 TRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGF   80 (275)
T ss_pred             ceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCC
Confidence            5899999 89999999999999999997249999999999999766555665544433221           12233345


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      .+++++|.+..... ......+......+.+.++.+. ++||||||||++.+
T Consensus        81 ~~l~~ipa~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~  130 (275)
T PRK13233         81 KDIRCVESGGPEPG-VGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDV  130 (275)
T ss_pred             CCcEEEECCCCCCC-CCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCce
Confidence            68999998743321 1111111111123556666666 88999999996654

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.87  E-value=4.3e-22  Score=152.70  Aligned_cols=117  Identities=28%  Similarity=0.341  Sum_probs=74.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeeccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~   99 (168)
                      |++|+|. +||||||||+|+|||..|++ .|+||++||+|+|.+....+++.....++.+           ...+.....
T Consensus         1 m~~iav~-~KGGvGKTT~~~nLA~~La~-~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (270)
T cd02040           1 MRQIAIY-GKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF   78 (270)
T ss_pred             CcEEEEE-eCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecC
Confidence            5789998 69999999999999999999 9999999999999866555444332222211           111222334


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      .+++++|.+....... ...........+.+.++.+. ++|||||||||+.+
T Consensus        79 ~~l~~ip~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~-~~yD~viID~~g~~  128 (270)
T cd02040          79 GGIKCVESGGPEPGVG-CAGRGVITAINLLEELGAYE-DDLDFVIYDVLGDV  128 (270)
T ss_pred             CCeEEEeCCCCCCCCC-CcCcchhhHHHHHHhcCccc-cCCCEEEEecccCc
Confidence            6889998874332211 11111111111222234455 78999999998754

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.87  E-value=5.3e-22  Score=152.81  Aligned_cols=115  Identities=24%  Similarity=0.264  Sum_probs=73.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc----------cCceeecccC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK----------DMKMVPIENY  100 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~  100 (168)
                      |++|+|+ +||||||||+|+|||..||+ .|+|||+||+|+|.++...+++.....++.+          ...+......
T Consensus         1 m~~iav~-~KGGVGKTT~~~nLA~~La~-~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~   78 (274)
T PRK13235          1 MRKVAIY-GKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYG   78 (274)
T ss_pred             CCEEEEe-CCCCccHHHHHHHHHHHHHH-CCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCC
Confidence            4789999 79999999999999999999 9999999999999977666554333333221          1122233346


Q ss_pred             CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhh-----cCCCCcEEEEeCCCCCC
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV-----DWGNLDILVIDMPPGTG  152 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-----~~~~yD~IiiD~p~~~~  152 (168)
                      +++++|.+...... ...........   .+++.+     . ++||||||||++.+.
T Consensus        79 ~l~~ip~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~-~~yD~ilID~~~~~~  130 (274)
T PRK13235         79 GTRCTESGGPEPGV-GCAGRGIITSV---NLLEQLGAYDDE-WNLDYVFYDVLGDVV  130 (274)
T ss_pred             CCEEEeCCCCCCCC-CCCCCceeehh---HHHHhhchhhcc-CCCCEEEEECCCCCc
Confidence            78888765222210 10001111110   122333     3 679999999987764

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.87  E-value=9.8e-22  Score=150.94  Aligned_cols=114  Identities=28%  Similarity=0.326  Sum_probs=73.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeec
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPI   97 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~   97 (168)
                      +++|+|. +||||||||+|+|||..||+ .|+|||+||+|+|. ++...++.....++.+             ...+...
T Consensus         2 ~~iIav~-~KGGVGKTT~~~nLA~~la~-~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~   78 (270)
T PRK13185          2 ALVLAVY-GKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE   78 (270)
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHheee
Confidence            5899998 69999999999999999999 99999999999987 4455554332322211             1111222


Q ss_pred             ccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHh--hcCCCCcEEEEeCCCCCC
Q 030973           98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTG  152 (168)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~yD~IiiD~p~~~~  152 (168)
                      ...+++++|.+..+.....   ..... ....++++.  +. ++|||||||||+++.
T Consensus        79 ~~~~l~~ip~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~-~~yD~viIDt~g~~~  130 (270)
T PRK13185         79 GYNGVDCVEAGGPPAGTGC---GGYVV-GETVKLLKEHHLL-DDYDVILFDVLGDVV  130 (270)
T ss_pred             CCCCcEEEECCCCCCCCCc---cchhH-HHHHHHHHhcCcc-ccCCEEEEecCCCcc
Confidence            3468999988754322111   11111 111122222  34 689999999988764

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.86  E-value=2.4e-21  Score=150.68  Aligned_cols=117  Identities=26%  Similarity=0.334  Sum_probs=81.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc------------Cceee
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVP   96 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~------------~~~~~   96 (168)
                      ..+++|+| ++||||||||+++|||..||+ .|+|||+||+|++.+++..+++.....++.+.            ..+..
T Consensus         4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~   81 (296)
T PRK13236          4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML   81 (296)
T ss_pred             cCceEEEE-ECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe
Confidence            44799999 789999999999999999999 99999999999999999888887655444332            11123


Q ss_pred             cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973           97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                      ....+++++|++.....   ....+......++.+.....+++||||+|||++.
T Consensus        82 ~~~~gv~llpa~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~  132 (296)
T PRK13236         82 TGFRGVKCVESGGPEPG---VGCAGRGIITAINFLEENGAYQDLDFVSYDVLGD  132 (296)
T ss_pred             eCCCCeEEEECCCCCCC---CCCcceeehhhhHHHHhcCccccCCEEEEecccc
Confidence            34579999998732221   1111111122344443322236899999999754

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.86  E-value=2.3e-21  Score=148.73  Aligned_cols=114  Identities=25%  Similarity=0.292  Sum_probs=70.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeeccc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIEN   99 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~   99 (168)
                      +|+|. +||||||||+|+|||.+||+ .|+|||+||+|++. ++...++.....++.+             ...+.....
T Consensus         2 ~i~~~-gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D~q~-~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~   78 (268)
T TIGR01281         2 ILAVY-GKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCDPKH-DSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGY   78 (268)
T ss_pred             EEEEE-cCCcCcHHHHHHHHHHHHHh-CCCeEEEEecCccc-cccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCC
Confidence            47787 79999999999999999999 99999999999987 4454554222223211             111222334


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      .+++++|.+...................++++  .+. ++|||||||||+++.
T Consensus        79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~yD~ViID~~~~~~  128 (268)
T TIGR01281        79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HIL-DDYDVILFDVLGDVV  128 (268)
T ss_pred             CCeEEEecCCCCCCCcccceehhhhHHHhhhc--ccc-ccCCEEEEecCCccc
Confidence            78999987643322111100000011122221  234 689999999988764

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.85  E-value=7.9e-21  Score=142.79  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=71.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      |++|+|.|.|||+||||++.|||..+++ .|+||++||+|+|++ +...++.....+.      .+   ......     
T Consensus         1 M~iI~v~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s-~~~w~~~~~~~~~------~~---~~~~~~-----   64 (231)
T PRK13849          1 MKLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRP-LTRWKENALRSNT------WD---PACEVY-----   64 (231)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-HHHHHHhhccccC------CC---ccceec-----
Confidence            5799999999999999999999999999 999999999999884 4443332111000      00   000000     


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                       .         ......++..++.+..+.||||||||||+.+.....++..
T Consensus        65 -~---------~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~al~~  105 (231)
T PRK13849         65 -A---------ADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIAS  105 (231)
T ss_pred             -C---------CCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHH
Confidence             0         0112345555555542579999999999998877665443

>PHA02518 ParA-like protein; Provisional

Probab=99.85  E-value=6.7e-21  Score=140.94  Aligned_cols=98  Identities=28%  Similarity=0.314  Sum_probs=69.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV  111 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  111 (168)
                      ++|+|+|.|||+||||+|+|||+.|++ .|+||++||+|+|++... .++.....             .  ..++..   
T Consensus         1 ~ii~v~~~KGGvGKTT~a~~la~~la~-~g~~vlliD~D~q~~~~~-~~~~~~~~-------------~--~~i~~~---   60 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSSTD-WAEAREEG-------------E--PLIPVV---   60 (211)
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChHH-HHHhcccC-------------C--CCCchh---
Confidence            589999999999999999999999999 999999999999985433 33211100             0  111110   


Q ss_pred             CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                        .         ....+.+.+..+. +.||||||||||+.+.....++..
T Consensus        61 --~---------~~~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~l~~   98 (211)
T PHA02518         61 --R---------MGKSIRADLPKVA-SGYDYVVVDGAPQDSELARAALRI   98 (211)
T ss_pred             --h---------ccHHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHHHHH
Confidence              0         0123455566666 899999999999987776655543

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.85  E-value=4.6e-21  Score=147.97  Aligned_cols=117  Identities=25%  Similarity=0.277  Sum_probs=72.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-----------Cceeeccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~   99 (168)
                      |++|+|+ +||||||||+|.|||..||+ .|+|||+||+|+|++....+.+ ....++.+.           ..+.....
T Consensus         1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~-~G~rVLliD~Dpq~n~t~~l~~-~~~~~l~d~~~~~~~~~~~~~~~i~~~~   77 (279)
T PRK13230          1 MRKFCFY-GKGGIGKSTTVCNIAAALAE-SGKKVLVVGCDPKADCTRNLVG-EKIPTVLDVLREKGIDNLGLEDIIYEGF   77 (279)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeCCcccccccccC-ccCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence            5789998 79999999999999999999 9999999999999855444433 222222111           11222335


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      .+++++|.+...... ............+.+.+..+...+|||||||||+.+
T Consensus        78 ~~l~lipa~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~  128 (279)
T PRK13230         78 NGIYCVESGGPEPGY-GCAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDV  128 (279)
T ss_pred             CCcEEEECCCCCCCC-CcCCcchhhHHHHHHHcCcccccCCCEEEEecCCcc
Confidence            789999877433221 100011111111122222333247999999998754

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.85  E-value=1e-20  Score=145.11  Aligned_cols=113  Identities=29%  Similarity=0.314  Sum_probs=71.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeeccc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIEN   99 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~   99 (168)
                      +|+|. +||||||||+|+|||+.||+ .|+|||+||+|++. ++...++.....++.+             ...+.....
T Consensus         2 ~i~v~-gKGGvGKTT~a~nLA~~la~-~G~rvlliD~Dpq~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~   78 (267)
T cd02032           2 VLAVY-GKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKH-DSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY   78 (267)
T ss_pred             EEEEe-cCCCCCHHHHHHHHHHHHHH-CCCcEEEEecCCCC-CcceeccCCCCCCHHHHHHhccccccCCChhheEEECC
Confidence            57787 59999999999999999999 99999999999986 4455554322222221             112222334


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHh--hcCCCCcEEEEeCCCCCCH
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGD  153 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--l~~~~yD~IiiD~p~~~~~  153 (168)
                      .++++++.+.......   +........ ..+++.  +. ++|||||||||+++..
T Consensus        79 ~~l~~i~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~-~~yD~vIIDt~g~~~~  129 (267)
T cd02032          79 GGVDCVEAGGPPAGAG---CGGYVVGET-VKLLKELNLF-EEYDVILFDVLGDVVC  129 (267)
T ss_pred             CCcEEEEcCCCCCCcc---ccchHHHHH-HHHHHHcccc-ccCCEEEEeCCCCccc
Confidence            6899998774322111   111111111 122322  34 6899999999887643

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR01287 nifH nitrogenase iron protein

Probab=99.84  E-value=1.5e-20  Score=144.81  Aligned_cols=115  Identities=28%  Similarity=0.374  Sum_probs=74.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-----------cCceeecccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIENY  100 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~  100 (168)
                      ++|+|+ +||||||||+|.|||..||+ .|+|||+||+|+|.+....+++.....++.+           ...+......
T Consensus         1 ~~ia~~-gKGGVGKTT~a~nLA~~La~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~   78 (275)
T TIGR01287         1 RQIAIY-GKGGIGKSTTTQNIAAALAE-MGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFG   78 (275)
T ss_pred             CeeEEe-CCCcCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCC
Confidence            468887 69999999999999999999 9999999999999876655555444433222           1122233346


Q ss_pred             CeeeeecCccCCCCCCcccCchhHH-HHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      ++++++.+...+.. .....+.... ..+++ +..+. ++||||||||++.+
T Consensus        79 ~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~l~-~~yD~iiIDt~~~~  127 (275)
T TIGR01287        79 GIRCVESGGPEPGV-GCAGRGVITAINLLEE-LGAYE-DDLDFVFYDVLGDV  127 (275)
T ss_pred             CEEEEeCCCCCccC-CCccchhhhHHHHHHH-hhhhh-ccCCEEEEeccCcc
Confidence            88888876433221 1111111111 12333 44556 78999999998754

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.84  E-value=1.4e-20  Score=146.31  Aligned_cols=115  Identities=25%  Similarity=0.313  Sum_probs=77.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeec
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPI   97 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~   97 (168)
                      ++++|+|. +|||+||||+++|||..|++ .|+|||+||+|+++++...+++.....++.+            .+.+...
T Consensus         3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   80 (295)
T PRK13234          3 KLRQIAFY-GKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKI   80 (295)
T ss_pred             cceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHhee
Confidence            37899997 99999999999999999999 9999999999999988776655443333321            1112223


Q ss_pred             ccCCeeeeecCccCCCCCCcccCchhHHHHHH-HHHHhhc-CCCCcEEEEeCCCCC
Q 030973           98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALR-KMSREVD-WGNLDILVIDMPPGT  151 (168)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~l~-~~~yD~IiiD~p~~~  151 (168)
                      ...+++++|.+.....   ....+.  ...+. ..++.+. .++||||||||++.+
T Consensus        81 ~~~gl~lipa~~~~~~---~~~~~~--~~~l~~~~l~~~~~~~~yD~IlID~~~~~  131 (295)
T PRK13234         81 GYKGIKCVESGGPEPG---VGCAGR--GVITSINFLEENGAYDDVDYVSYDVLGDV  131 (295)
T ss_pred             cCCCeEEEECCCCCCC---CCCCcc--eeeeHHHHHHHcCCCccCCEEEEEcCCCc
Confidence            4579999998643221   111110  11222 2444432 168999999997654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.83  E-value=4.6e-20  Score=133.55  Aligned_cols=112  Identities=30%  Similarity=0.432  Sum_probs=70.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP  112 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  112 (168)
                      .|+|+|+|||+||||+|+|||..+     +||++||+|++.|+++.+|+.+....................+.+.+..  
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   73 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLC--   73 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccch--
Confidence            389999999999999999999999     6999999999999999999987654321110000000011111111100  


Q ss_pred             CCCCcccCchhHHHHHHHHHHhh-cCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          113 SSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~l~~~l-~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                               ......+.+.+..+ .+++||||||||||++++....++.
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~  113 (179)
T cd03110          74 ---------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLT  113 (179)
T ss_pred             ---------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHH
Confidence                     01112233322211 1268999999999999887765543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.83  E-value=5.9e-20  Score=142.45  Aligned_cols=113  Identities=27%  Similarity=0.293  Sum_probs=70.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc-------------cCceeecccC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIENY  100 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~  100 (168)
                      |+|++ ||||||||+|.|||+.||+ .|+|||+||+|+|++....+.+... .++.+             ..........
T Consensus         3 ia~~g-KGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ~n~t~~l~g~~~-~~i~~~~~~~~~~~~~~~~~~~i~~~~~   79 (290)
T CHL00072          3 LAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLI-PTIIDTLQSKDYHYEDVWPEDVIYKGYG   79 (290)
T ss_pred             EEEEC-CCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCCCcccccccCcCC-CCHHHHHhhcccccccCChhheEEeCCC
Confidence            77766 9999999999999999999 9999999999999855444334322 12211             1112223357


Q ss_pred             CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCCCH
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGD  153 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~~~  153 (168)
                      +++++|.+........   ..... .....+++.+.. ++|||||||||+++..
T Consensus        80 ~l~lip~~~~~~~~~~---~~~~~-~~~~~ll~~l~~~~~yD~IiIDt~~~l~~  129 (290)
T CHL00072         80 GVDCVEAGGPPAGAGC---GGYVV-GETVKLLKELNAFYEYDIILFDVLGDVVC  129 (290)
T ss_pred             CeEEEeCCCCCCccch---hhccc-HHHHHHHHHhhccccCCEEEEecCCccee
Confidence            8999988754322111   00000 111123333321 4799999999988643

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.82  E-value=9.3e-21  Score=145.13  Aligned_cols=115  Identities=25%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---------cCceeecccCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------DMKMVPIENYG  101 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~  101 (168)
                      +++|+|. +|||+||||+|+|||..|++ .| |||+||+|++.+....+++... .++.+         ..........+
T Consensus         2 ~~~iav~-~KGGvGKTT~a~nLA~~La~-~G-rVLliD~Dpq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   77 (264)
T PRK13231          2 MKKIAIY-GKGGIGKSTTVSNMAAAYSN-DH-RVLVIGCDPKADTTRTLCGKRI-PTVLDTLKDNRKPELEDIIHEGFNG   77 (264)
T ss_pred             ceEEEEE-CCCCCcHHHHHHHHhcccCC-CC-EEEEEeEccCcccchhhhcCCc-cHHHHHHhhcCCCChhHhheeCCCC
Confidence            6899999 69999999999999999999 99 9999999999855544444322 22211         11222233567


Q ss_pred             eeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      ++++|.+..... .............+.+.+..++ ++||||||||++.+
T Consensus        78 l~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~  125 (264)
T PRK13231         78 ILCVESGGPEPG-VGCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDV  125 (264)
T ss_pred             eEEEEcCCCCCC-CCCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCc
Confidence            888887632211 1111111111112344555666 88999999998754

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.80  E-value=1.1e-20  Score=140.79  Aligned_cols=111  Identities=39%  Similarity=0.528  Sum_probs=66.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV  111 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  111 (168)
                      ++|+|.|+|||+||||+|.|||.+|++ .|+||-++|+|.+++++..+++......-.+.. ..+.  +....++     
T Consensus         1 HiIvV~sgKGGvGKSTva~~lA~aLa~-~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi-~Lp~--p~~~~L~-----   71 (261)
T PF09140_consen    1 HIIVVGSGKGGVGKSTVAVNLAVALAR-MGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGI-ELPV--PSHFFLP-----   71 (261)
T ss_dssp             EEEEEE-SSTTTTHHHHHHHHHHHHHC-TT--EEEEE--TTT-HHHHHHHHHHHHHHHHT---------EEE-SS-----
T ss_pred             CEEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCCHHHHHhccchhHHhcCc-ccCC--ccceeec-----
Confidence            589999999999999999999999999 999999999999999999999743221000000 0110  1111111     


Q ss_pred             CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      .........+......+++++..+. ..+||||||||.+-+
T Consensus        72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~  111 (261)
T PF09140_consen   72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGTDD  111 (261)
T ss_dssp             SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred             ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence            1001111222234468899998888 899999999995433

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.79  E-value=2.8e-19  Score=130.46  Aligned_cols=115  Identities=30%  Similarity=0.397  Sum_probs=73.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS  113 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  113 (168)
                      |+|+|.|||+||||+|++||..|++ .|+||++||+|++.+.+..+++...  .+..........   ..-+........
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~-~g~~VlliD~D~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~   74 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALAR-KGKKVLLIDLDPQAPNLSILFGVYD--ILREGLENANAI---LKNFESQDIYQG   74 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEESTTSHHHHHHTTCHH--HHTTSSHGHHCH---HESCCHHHHHHH
T ss_pred             CEEEcCCCCccHHHHHHHHHhcccc-ccccccccccCcccccHHHHhcchh--hccccceehhhh---hhccchhhhhhh
Confidence            7899999999999999999999999 9999999999999988777765400  000000000000   000000000000


Q ss_pred             CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       114 ~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      .     .. .....+.++++.+....||||||||||+++.....++.
T Consensus        75 ~-----~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~  115 (195)
T PF01656_consen   75 E-----EY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNALA  115 (195)
T ss_dssp             C-----HC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHH
T ss_pred             h-----hh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHHHH
Confidence            0     00 23456778877755245999999999999888665544

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.79  E-value=5.6e-20  Score=130.18  Aligned_cols=117  Identities=27%  Similarity=0.389  Sum_probs=84.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccC-------------c----e
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-------------K----M   94 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~-------------~----~   94 (168)
                      |+|+|+|++||+||||+|.+||..+|+ .|++|++||+|...+.+..+++.+...++.+..             .    +
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la~-~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~   79 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALAR-KGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHI   79 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHH-TTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHh
Confidence            689999999999999999999999999 999999999999999999999988876655421             1    1


Q ss_pred             eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHH
Q 030973           95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL  156 (168)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~  156 (168)
                      .+....++.+++..      ...........+.+.++++.++ +.||+||||+|+.+.....
T Consensus        80 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~  134 (157)
T PF13614_consen   80 YSDAHDGLDLLPPP------SSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT  134 (157)
T ss_dssp             EEESSTTEEEE--S------SSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH
T ss_pred             eeccCCCeEEecCC------CCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH
Confidence            11122455555432      2211122345578999999999 8999999999999876644

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.78  E-value=8.4e-19  Score=126.42  Aligned_cols=50  Identities=48%  Similarity=0.672  Sum_probs=45.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      +|+|+|+|||+||||+|+|||..+++ +|+||++||+|++.+++...++..
T Consensus         1 ~i~v~~~kgG~GKtt~a~~la~~l~~-~g~~vllvD~D~~~~~~~~~~~~~   50 (179)
T cd02036           1 VIVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRNLDLILGLE   50 (179)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCchhhcccc
Confidence            58999999999999999999999999 999999999999988887776543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.78  E-value=1.9e-18  Score=134.34  Aligned_cols=56  Identities=32%  Similarity=0.385  Sum_probs=48.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT   89 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~   89 (168)
                      ++|+|+ +|||+||||+|+|||..||+ .|+|||+||+|++.+++..+++.....++.
T Consensus         1 ~vIav~-gKGGvGKTT~a~nLA~~La~-~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~   56 (296)
T TIGR02016         1 RIIAIY-GKGGSGKSFTTTNLSHMMAE-MGKRVLQLGCDPKHDSTSLLFGGISLPTII   56 (296)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEecCCCCccchhccCCCCCCHH
Confidence            579998 89999999999999999999 999999999999998888877643333443

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.73  E-value=3.7e-17  Score=128.23  Aligned_cols=118  Identities=22%  Similarity=0.317  Sum_probs=78.2

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccC--------ce----
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM--------KM----   94 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~--------~~----   94 (168)
                      ..+..++|+|+ +|||+||||+++|||..|++ .|+||++||+|+++++++.+||....+++.+..        ..    
T Consensus        27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~-~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~d  104 (329)
T cd02033          27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD  104 (329)
T ss_pred             CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeec
Confidence            34568999998 59999999999999999999 999999999999999999999977655543310        00    


Q ss_pred             eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhh---cCCCCcEEEEeCCCCC
Q 030973           95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV---DWGNLDILVIDMPPGT  151 (168)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l---~~~~yD~IiiD~p~~~  151 (168)
                      ......+++++..+   .+.....+........ .++++.+   . ..||||||||++.+
T Consensus       105 v~~~~~gv~~~~~g---~p~~~~G~~~~~~i~~-~~~l~~l~~~~-w~~DyVliD~~gdv  159 (329)
T cd02033         105 VCFKRDGVFAMELG---GPEVGRGCGGRGIIHG-FELLEKLGFHD-WDFDYVLLDFLGDV  159 (329)
T ss_pred             eEEEeCCEEEecCC---CCeecccccchHHHHH-HHHHHHccCcc-ccCCEEEEecCCcc
Confidence            01112456665533   2222222222111111 1344443   4 37999999997744

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.73  E-value=3.8e-17  Score=121.18  Aligned_cols=98  Identities=26%  Similarity=0.355  Sum_probs=66.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      |++|.|.|.|||+||||.+..||..|++ +|.+|.+||+||++|...+.-.......+.          .++.+...   
T Consensus         1 M~vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~----------~~~~V~~~---   66 (231)
T PF07015_consen    1 MPVITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLAKWAENAQRPGAWP----------DRIEVYEA---   66 (231)
T ss_pred             CCeEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHHHHHHhccccCCCC----------CCeeEEec---
Confidence            6899999999999999999999999999 999999999999986543321111111111          11111110   


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA  154 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~  154 (168)
                                  .....+++.++......|||||||++++-+..
T Consensus        67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~   98 (231)
T PF07015_consen   67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASEL   98 (231)
T ss_pred             ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchh
Confidence                        11235566665544246999999999865443

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.71  E-value=5.1e-17  Score=108.19  Aligned_cols=42  Identities=50%  Similarity=0.532  Sum_probs=39.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPS   75 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~   75 (168)
                      +|+++|.|||+||||++.+||..+++ . |++|+++|+|++.+.
T Consensus         1 ~i~~~~~kgg~gkt~~~~~la~~~~~-~~~~~~~l~d~d~~~~~   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAK-EAGRRVLLVDLDLQFGD   43 (106)
T ss_pred             CEEEECCCCCCcHHHHHHHHHHHHHh-cCCCcEEEEECCCCCCC
Confidence            58899999999999999999999999 7 999999999998743

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.71  E-value=5.2e-17  Score=107.56  Aligned_cols=39  Identities=64%  Similarity=0.720  Sum_probs=37.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +|+|.|.|||+||||+|.+||..+++ .|++|+++|+|++
T Consensus         1 ~i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d~~   39 (104)
T cd02042           1 VIAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ   39 (104)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            48999999999999999999999999 9999999999987

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=99.71  E-value=1e-17  Score=127.71  Aligned_cols=48  Identities=35%  Similarity=0.377  Sum_probs=45.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      +.++++|||+||||+++++|..+|+ .|+|||+||+|++ ++++..|+..
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~-~sl~~~~~~~   49 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQE   49 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc-ccHHHHhCCc
Confidence            6678999999999999999999999 9999999999997 5999999876

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.69  E-value=2e-17  Score=123.44  Aligned_cols=107  Identities=25%  Similarity=0.373  Sum_probs=67.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC-------CCcccccccCCCCCccccCceeecc--------
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG-------PSVPMMMKIDQKPEVTKDMKMVPIE--------   98 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~--------   98 (168)
                      |.++++|||+||||+++++|..+++ .|+||++||+|+++       +++..+++..+.. ...........        
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~-~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~   78 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPE-IAPNLYREEVDATRRVERA   78 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEECCCCcccccccCCCchhhhccCChH-HHHHHHHHHHHHHHHhhhc
Confidence            4678999999999999999999999 99999999999988       3555555431110 00000000000        


Q ss_pred             --cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCC-CcEEEEeCCCCC
Q 030973           99 --NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGN-LDILVIDMPPGT  151 (168)
Q Consensus        99 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-yD~IiiD~p~~~  151 (168)
                        ..+..+++.+...++.        ...-.+.++++.++ +. ||+|||||||+.
T Consensus        79 ~~~~~~~~~~~~~~~p~~--------~ell~~~~l~~~l~-~~~yD~IIiD~pp~~  125 (217)
T cd02035          79 WGGEGGLMLELAAALPGI--------EELASLLAVFREFS-EGLYDVIVFDTAPTG  125 (217)
T ss_pred             ccchhhhHHhHhccCCCH--------HHHHHHHHHHHHHh-cCCCCEEEECCCCch
Confidence              0122233333222111        11223777888877 55 999999999973

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.68  E-value=1.8e-16  Score=110.43  Aligned_cols=43  Identities=53%  Similarity=0.688  Sum_probs=39.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      +|+|+++|||+||||++.++|..+++ .|++|+++|+|++.+++
T Consensus         1 ~i~~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~   43 (139)
T cd02038           1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANL   43 (139)
T ss_pred             CEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCC
Confidence            58999999999999999999999999 99999999999877543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.68  E-value=1.6e-16  Score=124.12  Aligned_cols=109  Identities=28%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec-----
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM-----  107 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----  107 (168)
                      .|.++++||||||||+|+++|..+|+ .|+|||+|..||.+ +++..|+.+-........       .|++.+..     
T Consensus         3 riv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-------~nL~a~eiD~~~~   73 (322)
T COG0003           3 RIVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-------PNLDALELDPEKA   73 (322)
T ss_pred             EEEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCC-chHhhhccccCCchhhcC-------CCCceeeecHHHH
Confidence            56777999999999999999999999 99999999999966 899998873221111100       11111110     


Q ss_pred             ------------------Ccc--CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973          108 ------------------GFL--VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       108 ------------------~~~--~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                                        +.+  ...+.....++....-.+..+.+.+...+||+||+||||.
T Consensus        74 l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPT  136 (322)
T COG0003          74 LEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPT  136 (322)
T ss_pred             HHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCCh
Confidence                              000  0111112234444555667777776668899999999995

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.68  E-value=4.7e-16  Score=114.74  Aligned_cols=116  Identities=25%  Similarity=0.368  Sum_probs=80.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc--------------------
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD--------------------   91 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~--------------------   91 (168)
                      .|+| ++|||+||||+|+.|+..+....|++||+||+|+ .++|+..||++.. ..+.+.                    
T Consensus         2 kIaI-~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f   79 (255)
T COG3640           2 KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF   79 (255)
T ss_pred             eEEE-ecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence            3555 7999999999999988888882459999999999 7899999998873 222220                    


Q ss_pred             ---------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973           92 ---------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD  153 (168)
Q Consensus        92 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~  153 (168)
                               .........+++++..|.+........++   ....++++++.+...+||+||+||-+|+.+
T Consensus        80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp---~~allR~~l~~l~~~~~e~VivDtEAGiEH  147 (255)
T COG3640          80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP---MNALLRRLLRHLILNRYEVVIVDTEAGIEH  147 (255)
T ss_pred             ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch---HHHHHHHHHHHHhcccCcEEEEecccchhh
Confidence                     00111223356666666554333333333   345778888887746699999999998644

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=99.65  E-value=6.4e-16  Score=120.59  Aligned_cols=48  Identities=38%  Similarity=0.436  Sum_probs=42.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      +.|+++||||||||+|+.+|.++|+ .|+|||++..||.+ ++...|+.+
T Consensus         3 ~~~~~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~-~L~d~l~~~   50 (305)
T PF02374_consen    3 ILFFGGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAH-SLSDVLGQK   50 (305)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTT-HHHHHHTS-
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCc-cHHHHhCCc
Confidence            5667999999999999999999999 99999999999965 888899874

...

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.57  E-value=1.2e-14  Score=109.54  Aligned_cols=113  Identities=29%  Similarity=0.361  Sum_probs=80.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeeccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN   99 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~   99 (168)
                      |.|+|+ +|||.||||+++||+.+||+ .|+||+.|.|||-+.+...+++-...+++.+            .+.+.....
T Consensus         1 r~IAiY-GKGGIGKST~~~Nlsaala~-~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~   78 (273)
T PF00142_consen    1 RKIAIY-GKGGIGKSTTASNLSAALAE-MGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGF   78 (273)
T ss_dssp             EEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEG
T ss_pred             CeEEEE-cCCCcccChhhhHHHHHHHh-ccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEecc
Confidence            457774 79999999999999999999 9999999999999988877887666555433            123445566


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCC
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPP  149 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~  149 (168)
                      .++.++..|   .+++...+.+......++.+-+.-.. .+||+|++|.-.
T Consensus        79 ~gi~CvEsG---GPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLG  126 (273)
T PF00142_consen   79 KGILCVESG---GPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLG  126 (273)
T ss_dssp             GGEEEEE------SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEES
T ss_pred             CCceeeccC---CCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEe
Confidence            799999998   77888888877666665555333221 469999999643

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.56  E-value=2e-14  Score=97.06  Aligned_cols=106  Identities=25%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSS  115 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  115 (168)
                      ++++|||+||||++.++|+.+++ .|+||++||+|+  +++...+......              ...++-.+...+.+.
T Consensus         3 ~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~--~~~~~~~~~~~~~--------------~~~~i~~g~~~~~~~   65 (116)
T cd02034           3 AITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP--DDLPERLSVEVGE--------------IKLLLVMGMGRPGGE   65 (116)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc--hhhHHHHhhccCC--------------ceEEEEecccccCCC
Confidence            45789999999999999999999 999999999999  3444333332211              011122221111111


Q ss_pred             CcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          116 PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       116 ~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ...+.   ....+++++..+....|||+++||++++......+.+.
T Consensus        66 g~~~~---~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~~~~  108 (116)
T cd02034          66 GCYCP---ENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEG  108 (116)
T ss_pred             CCEeh---hhHHHHHHHHHeEccCCCEEEEecHHHHHHHHhhcccc
Confidence            11111   11367777777532899999999999997777665543

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.56  E-value=3.6e-14  Score=104.59  Aligned_cols=114  Identities=31%  Similarity=0.382  Sum_probs=88.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceeecc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIE   98 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~   98 (168)
                      ++.|+|+ +|||.||||++.|++.+||+ .|+||++|-|||-+.+...++|-...+++.+            .+.+....
T Consensus         1 mr~iAiY-GKGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~G   78 (278)
T COG1348           1 MRQIAIY-GKGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTG   78 (278)
T ss_pred             CceEEEe-cCCCcCcchhHHHHHHHHHH-cCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheecc
Confidence            4578885 79999999999999999999 9999999999999988888888444443322            24456677


Q ss_pred             cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCC
Q 030973           99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPP  149 (168)
Q Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~  149 (168)
                      ..++.++.+|   .+++...+.+......++.+-+.-.. +..|+||+|...
T Consensus        79 f~Gv~CVEsG---GPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLG  127 (278)
T COG1348          79 FGGVKCVESG---GPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLG  127 (278)
T ss_pred             CCceEEeecC---CCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccC
Confidence            7899999998   88899999888777666655433122 346999999865

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.52  E-value=5e-14  Score=106.05  Aligned_cols=53  Identities=43%  Similarity=0.630  Sum_probs=48.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      +..|+|+|+|||+||||+++|||..|+.  .+|++++|+|...|+++.+|+.+..
T Consensus         1 mm~vAV~sGKGGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~   53 (284)
T COG1149           1 MMQVAVASGKGGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVL   53 (284)
T ss_pred             CcEEEEeecCCCCChhhHHHHHHHHhcc--ccceEEEecCCCCCCcceEeccchh
Confidence            3569999999999999999999999987  7899999999999999999986643

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.46  E-value=5.5e-13  Score=102.59  Aligned_cols=45  Identities=33%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ..+++|+|+ +.+|+||||++++||..+++ .|+||++||+|+++..
T Consensus        70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~  114 (272)
T TIGR00064        70 NKPNVILFV-GVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAA  114 (272)
T ss_pred             CCCeEEEEE-CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHH
Confidence            347888888 79999999999999999998 9999999999986643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.45  E-value=4.3e-13  Score=105.35  Aligned_cols=130  Identities=24%  Similarity=0.283  Sum_probs=100.0

Q ss_pred             ccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc------------
Q 030973           26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK------------   93 (168)
Q Consensus        26 ~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~------------   93 (168)
                      ....+.++++|.+.|||+|-||+|.|+|+.++...++.|+++|+|.+.+.-..+|+.++..++.+...            
T Consensus        99 s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~  178 (366)
T COG4963          99 SIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS  178 (366)
T ss_pred             hhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHH
Confidence            35667899999999999999999999999999978999999999999998889999988887776321            


Q ss_pred             eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhc
Q 030973           94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL  162 (168)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~  162 (168)
                      ....-..++.+++..      .............+..+++.++ ..||+||+|.|..+.+.+..++..-
T Consensus       179 ~~~~~~~~l~ll~a~------~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~vL~~S  240 (366)
T COG4963         179 LLTRLASGLKLLAAP------TELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQVLSGS  240 (366)
T ss_pred             HHhccCCCceeecCC------cchhhhcccccchHHHHHHHhh-ccCCeEEEcCCCccchHHHHHHhcC
Confidence            111222455555432      2222222445667888888888 8999999999998888877766543

>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.6e-13  Score=102.19  Aligned_cols=54  Identities=28%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      ........|+++||||||||+++.||..+|. .+.+||+|.+||.+ +++..|+-.
T Consensus        15 ~q~slKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAH-NlSDAF~qk   68 (323)
T KOG2825|consen   15 EQTSLKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAH-NLSDAFSQK   68 (323)
T ss_pred             hcceeeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCccc-chHHHHHHH
Confidence            4457788999999999999999999999999 99999999999976 778777633

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.41  E-value=2.3e-12  Score=96.89  Aligned_cols=48  Identities=33%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM   79 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~   79 (168)
                      ++++.+.++|||+||||+|++||.++++ .|++|++||+|++++.+..+
T Consensus         2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~~~~~~   49 (241)
T PRK13886          2 AKIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNATFEGY   49 (241)
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCchhhhH
Confidence            6799999999999999999999999999 99999999999998766544

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.40  E-value=4.3e-12  Score=89.28  Aligned_cols=37  Identities=35%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      +.+++|+||||++.+++..+.+ .|.||+++|+|++.+
T Consensus         4 ~~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~~~~   40 (148)
T cd03114           4 ITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSP   40 (148)
T ss_pred             EECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCC
Confidence            4689999999999999999999 999999999998653

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK10867 signal recognition particle protein; Provisional

Probab=99.40  E-value=2.2e-12  Score=104.71  Aligned_cols=95  Identities=26%  Similarity=0.302  Sum_probs=62.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      +.+.++.+..|+||||++++||.++++ . |++|++||+|++++.....+....+             ..++.+.+.+. 
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa~eQL~~~a~-------------~~gv~v~~~~~-  164 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAAIEQLKTLGE-------------QIGVPVFPSGD-  164 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHHHHHHHHHHh-------------hcCCeEEecCC-
Confidence            445555689999999999999999999 7 9999999999998775544432111             12333333210 


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                       .  ..       ......+.++..+...||+||||||+..
T Consensus       165 -~--~d-------p~~i~~~a~~~a~~~~~DvVIIDTaGrl  195 (433)
T PRK10867        165 -G--QD-------PVDIAKAALEEAKENGYDVVIVDTAGRL  195 (433)
T ss_pred             -C--CC-------HHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence             0  00       1122234444433267999999999975

>TIGR00959 ffh signal recognition particle protein

Probab=99.35  E-value=5.2e-12  Score=102.46  Aligned_cols=47  Identities=32%  Similarity=0.367  Sum_probs=40.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCCCccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPM   78 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~~l~~   78 (168)
                      .+.|.++++..|+||||++++||.++. + .|+||++||+|++++....
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~kV~lV~~D~~R~~a~~  145 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGKKVLLVACDLYRPAAIE  145 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCCeEEEEeccccchHHHH
Confidence            467777789999999999999999987 5 7999999999998876444

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.34  E-value=5.1e-12  Score=99.17  Aligned_cols=44  Identities=34%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .+++|++++ .+|+||||++++||..++. .|++|+++|+|+++..
T Consensus       113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~  156 (318)
T PRK10416        113 KPFVILVVG-VNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAA  156 (318)
T ss_pred             CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchh
Confidence            467888875 8899999999999999998 9999999999997643

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.32  E-value=1.9e-11  Score=87.98  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=61.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS  113 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  113 (168)
                      |.++.+.+|+||||++.++|..+++ .|++|++||+|+.++.....+......             .++.+.+..   . 
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~~-------------~~~~~~~~~---~-   63 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGEQ-------------VGVPVFEEG---E-   63 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhccc-------------CCeEEEecC---C-
Confidence            3455799999999999999999999 899999999999887765554432211             233333321   0 


Q ss_pred             CCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       114 ~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      ...       ....+.+.+.......||+||||+|+..
T Consensus        64 ~~~-------~~~~~~~~~~~~~~~~~d~viiDt~g~~   94 (173)
T cd03115          64 GKD-------PVSIAKRAIEHAREENFDVVIVDTAGRL   94 (173)
T ss_pred             CCC-------HHHHHHHHHHHHHhCCCCEEEEECcccc
Confidence            000       1122223333322278999999999975

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.30  E-value=1.9e-11  Score=98.92  Aligned_cols=48  Identities=29%  Similarity=0.322  Sum_probs=40.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      +.+|++ .+..|+||||++++||..+.+ .|+||++|++|+++++....+
T Consensus       100 ~~vi~l-vG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~aA~eQL  147 (429)
T TIGR01425       100 QNVIMF-VGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRAGAFDQL  147 (429)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccchhHHHHH
Confidence            455555 568999999999999999998 999999999999986554443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK13768 GTPase; Provisional

Probab=99.29  E-value=7.4e-12  Score=95.48  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      +.+++++||+||||++.+++..++. .|++|++||+|++...
T Consensus         4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~~~~~   44 (253)
T PRK13768          4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDPAVEY   44 (253)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCCcccc
Confidence            4445677999999999999999999 9999999999997644

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.20  E-value=1.7e-10  Score=91.75  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=61.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      ..++|+++++. |+||||++++||..+.+ .|++|.+|++|+++.+....+....+.             .++.+...  
T Consensus       205 ~~~ii~lvGpt-GvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~-------------lgvpv~~~--  267 (407)
T PRK12726        205 NHRIISLIGQT-GVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADK-------------LDVELIVA--  267 (407)
T ss_pred             CCeEEEEECCC-CCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhc-------------CCCCEEec--
Confidence            47888888865 99999999999999988 899999999999886443333221111             11111110  


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGT  151 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~  151 (168)
                                   ..+..+.+.++.++. +.||+||||||+..
T Consensus       268 -------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~  297 (407)
T PRK12726        268 -------------TSPAELEEAVQYMTYVNCVDHILIDTVGRN  297 (407)
T ss_pred             -------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence                         012345555555541 57999999999873

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.19  E-value=9.3e-11  Score=93.66  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=60.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      ..++|+++++ +|+||||+++.||..+.. .|++|.+|++|+++.+....+....+.             .++.+.... 
T Consensus       240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~RiaAvEQLk~yae~-------------lgipv~v~~-  303 (436)
T PRK11889        240 EVQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKT-------------IGFEVIAVR-  303 (436)
T ss_pred             CCcEEEEECC-CCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHhhh-------------cCCcEEecC-
Confidence            3577888766 999999999999999998 999999999999873322222211110             122222110 


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcC-CCCcEEEEeCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGT  151 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~yD~IiiD~p~~~  151 (168)
                                    ....+.+.+..++. .+||+|||||++..
T Consensus       304 --------------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs  332 (436)
T PRK11889        304 --------------DEAAMTRALTYFKEEARVDYILIDTAGKN  332 (436)
T ss_pred             --------------CHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence                          12345556655541 36999999999864

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=99.13  E-value=1.5e-10  Score=89.63  Aligned_cols=44  Identities=36%  Similarity=0.437  Sum_probs=37.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhC-C-CeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g-~rVlliD~D~~~~~   75 (168)
                      ..++|+|++ .+|+||||++++||..++. . | ++|.+|++|+++..
T Consensus       193 ~~~vi~~vG-ptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~  238 (282)
T TIGR03499       193 QGGVIALVG-PTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIG  238 (282)
T ss_pred             CCeEEEEEC-CCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchh
Confidence            467888875 5899999999999999998 5 5 99999999997743

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.11  E-value=3.3e-10  Score=72.99  Aligned_cols=33  Identities=58%  Similarity=0.734  Sum_probs=29.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .++++++|+||||++.+||..+++ .|++|+++|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC
Confidence            344566699999999999999999 999999999

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.08  E-value=4.6e-10  Score=91.44  Aligned_cols=46  Identities=41%  Similarity=0.536  Sum_probs=39.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~   77 (168)
                      .+.+|.+ .+..|+||||++++||..+.+ .|++|++|++|++++...
T Consensus        94 ~p~vI~l-vG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~  139 (437)
T PRK00771         94 KPQTIML-VGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAY  139 (437)
T ss_pred             CCeEEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHH
Confidence            3555555 578999999999999999999 999999999999886543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.07  E-value=3.8e-10  Score=90.92  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=36.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH-HHhCCCeEEEEeCCCCCCCcc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL-ASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l-a~~~g~rVlliD~D~~~~~l~   77 (168)
                      .+.++.+.+|+||||++++||..+ .. .|++|+++++|+++....
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~  268 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAI  268 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHH
Confidence            344446899999999999999876 45 799999999999885433

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.06  E-value=4.6e-10  Score=91.38  Aligned_cols=43  Identities=37%  Similarity=0.448  Sum_probs=36.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~   74 (168)
                      .++++|++ .+|+||||++++||..++ ...|++|.+||+|+++.
T Consensus       221 ~~~i~~vG-ptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        221 GGVVALVG-PTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            56788875 599999999999999998 32689999999999764

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.06  E-value=5e-10  Score=89.63  Aligned_cols=96  Identities=24%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      .+.|.+.-+--|+||||+|+.||++|.+ .|+||++|-+|.++|..-.-|..-.+.             -++.+.+.+  
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q-------------~~v~~f~~~--  162 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQ-------------VGVPFFGSG--  162 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHH-------------cCCceecCC--
Confidence            4455555677789999999999999999 999999999999998765554322211             233333221  


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                       ....        ..+-..+.++.++...||+|||||...+
T Consensus       163 -~~~~--------Pv~Iak~al~~ak~~~~DvvIvDTAGRl  194 (451)
T COG0541         163 -TEKD--------PVEIAKAALEKAKEEGYDVVIVDTAGRL  194 (451)
T ss_pred             -CCCC--------HHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence             0011        1124455566666467999999999864

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.06  E-value=5.6e-10  Score=82.07  Aligned_cols=95  Identities=26%  Similarity=0.276  Sum_probs=57.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      +++|++++ -.|+||||+++.||+++.. .|++|.+|-+|.++.+....+..-.+             .-++.+....  
T Consensus         1 p~vi~lvG-ptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ga~eQL~~~a~-------------~l~vp~~~~~--   63 (196)
T PF00448_consen    1 PKVIALVG-PTGVGKTTTIAKLAARLKL-KGKKVALISADTYRIGAVEQLKTYAE-------------ILGVPFYVAR--   63 (196)
T ss_dssp             SEEEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEESTSSTHHHHHHHHHHH-------------HHTEEEEESS--
T ss_pred             CEEEEEEC-CCCCchHhHHHHHHHHHhh-ccccceeecCCCCCccHHHHHHHHHH-------------Hhccccchhh--
Confidence            35677755 5689999999999999999 79999999999988554333321111             0223332211  


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                       . .       ....+.+.+.++..+.++||+||||||...
T Consensus        64 -~-~-------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~   95 (196)
T PF00448_consen   64 -T-E-------SDPAEIAREALEKFRKKGYDLVLIDTAGRS   95 (196)
T ss_dssp             -T-T-------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSS
T ss_pred             -c-c-------hhhHHHHHHHHHHHhhcCCCEEEEecCCcc
Confidence             0 0       011234445555444367999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14974 cell division protein FtsY; Provisional

Probab=99.01  E-value=2.2e-09  Score=84.82  Aligned_cols=43  Identities=30%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      +.+|.| .+..|+||||++++||..+.+ .|++|+++++|.++..
T Consensus       140 ~~vi~~-~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~  182 (336)
T PRK14974        140 PVVIVF-VGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAG  182 (336)
T ss_pred             CeEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHH
Confidence            455555 569999999999999999998 9999999999987644

>TIGR00347 bioD dethiobiotin synthase

Probab=99.00  E-value=5.1e-10  Score=79.95  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=29.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      |++..+|+||||++.+||..|++ +|+||.++.
T Consensus         2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~~~k   33 (166)
T TIGR00347         2 VTGTDTGVGKTVASSALAAKLKK-AGYSVGYYK   33 (166)
T ss_pred             eecCCCCccHHHHHHHHHHHHHH-CCCcEEEEE
Confidence            57889999999999999999999 999999974

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=98.99  E-value=8.4e-10  Score=90.87  Aligned_cols=75  Identities=23%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             eeecCceeeccccCCccc-ccCCCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973            8 FTRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus         8 ~e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      .|.|+.+|+++.+...+. ......|+|.|+|..+   |+||||++.|||..|++ .|+||+++   .+.|+++..|+..
T Consensus        31 ~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~-~Gkkvlli---LR~Psl~~~fg~k  106 (557)
T PRK13505         31 LEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNK-IGKKTVIA---LREPSLGPVFGIK  106 (557)
T ss_pred             HHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-cCCeEEEE---EecCCcccccCCC
Confidence            378999999998876543 2233589999999999   99999999999999999 99999999   8899999999987


Q ss_pred             CCC
Q 030973           84 QKP   86 (168)
Q Consensus        84 ~~~   86 (168)
                      ...
T Consensus       107 gga  109 (557)
T PRK13505        107 GGA  109 (557)
T ss_pred             CCc
Confidence            765

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.97  E-value=2.8e-09  Score=82.06  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |++|+|++.| |+||||++.+|+..|.+ +| +|.+|+.|+..
T Consensus         1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~-~G-~V~~IKhd~h~   40 (274)
T PRK14493          1 MKVLSIVGYK-ATGKTTLVERLVDRLSG-RG-RVGTVKHMDTE   40 (274)
T ss_pred             CcEEEEECCC-CCCHHHHHHHHHHHHHh-CC-CEEEEEEcCCC
Confidence            5789998885 99999999999999999 99 89999999854

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.96  E-value=1.1e-08  Score=79.84  Aligned_cols=44  Identities=32%  Similarity=0.470  Sum_probs=39.2

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ..+++|.|+ +.+|+||||++.+|+..+.+ .|++|.+|++|++.+
T Consensus        32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~~   75 (300)
T TIGR00750        32 GNAHRVGIT-GTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSSP   75 (300)
T ss_pred             CCceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence            347788886 88999999999999999999 999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.90  E-value=6.2e-09  Score=86.09  Aligned_cols=44  Identities=32%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~~~~   75 (168)
                      .+++|+|++ .+|+||||++.+||..+.. .  +++|.+|++|.++.+
T Consensus       349 ~G~vIaLVG-PtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRig  394 (559)
T PRK12727        349 RGGVIALVG-PTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVG  394 (559)
T ss_pred             CCCEEEEEC-CCCCCHHHHHHHHHHHHHH-hcCCCceEEEeccccccc
Confidence            478888875 5799999999999998887 5  589999999997743

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.89  E-value=1.1e-08  Score=82.18  Aligned_cols=49  Identities=29%  Similarity=0.406  Sum_probs=37.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCCCCCCccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~~~~~l~~~~   80 (168)
                      +++|++ .+..|+||||+++.||..+...   .|++|.+|++|+++......+
T Consensus       174 ~~vi~l-vGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL  225 (388)
T PRK12723        174 KRVFIL-VGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI  225 (388)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence            455665 5666999999999999998741   478999999999875544333

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=9e-09  Score=81.38  Aligned_cols=100  Identities=19%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM  107 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (168)
                      .+..+.|.++-+--|+||||+|+.||+++.+ .|+||++|=+|..++....-+......             ..+.+...
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA~k-------------~~iP~ygs  162 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNATK-------------ARVPFYGS  162 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHh-cCCceeEEeecccccchHHHHHHHhHh-------------hCCeeEec
Confidence            3334445555667789999999999999999 999999999999887665555433222             11222211


Q ss_pred             CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      +  ..         ........+-++..+.++||+||+||...+-
T Consensus       163 y--te---------~dpv~ia~egv~~fKke~fdvIIvDTSGRh~  196 (483)
T KOG0780|consen  163 Y--TE---------ADPVKIASEGVDRFKKENFDVIIVDTSGRHK  196 (483)
T ss_pred             c--cc---------cchHHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence            1  01         1112344455555555899999999998753

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.76  E-value=1.6e-08  Score=78.83  Aligned_cols=96  Identities=22%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      ++-||.| -+-.|+||||+.+.||+.|-+ .|+||++.-+|..+...-.-+..+.++             -++.++... 
T Consensus       138 ~p~Vil~-vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~w~er-------------~gv~vI~~~-  201 (340)
T COG0552         138 KPFVILF-VGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEVWGER-------------LGVPVISGK-  201 (340)
T ss_pred             CcEEEEE-EecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHHHHHH-------------hCCeEEccC-
Confidence            3555655 567899999999999999999 999999999999886655556555443             455566532 


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                       ...++.         ...-+.++..+.+.||+|||||...+
T Consensus       202 -~G~DpA---------aVafDAi~~Akar~~DvvliDTAGRL  233 (340)
T COG0552         202 -EGADPA---------AVAFDAIQAAKARGIDVVLIDTAGRL  233 (340)
T ss_pred             -CCCCcH---------HHHHHHHHHHHHcCCCEEEEeCcccc
Confidence             122221         22223333333389999999999876

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=98.73  E-value=5.7e-08  Score=75.36  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           48 TAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        48 ~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      +|+++|..+++ .|+|||+||+|+++ +++..||.+
T Consensus         1 ~a~a~a~~~a~-~g~~vllv~~Dp~~-~l~~~~~~~   34 (284)
T TIGR00345         1 ISCATAIRLAE-QGKKVLLVSTDPAH-SLSDVFEQE   34 (284)
T ss_pred             CHHHHHHHHHH-CCCeEEEEECCCCC-CHHHHhCCc
Confidence            47899999999 99999999999986 888888764

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.70  E-value=2.7e-08  Score=70.99  Aligned_cols=108  Identities=21%  Similarity=0.236  Sum_probs=71.9

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCcee----ecccCCeee
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV----PIENYGVKC  104 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  104 (168)
                      ++...+.++.+-+|+||||+|..|...|.+ .|+.|.++|.|.-+..|..-+|.+.+.....+..+.    .....++-+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iv   98 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIV   98 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHH-cCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEE
Confidence            334567777899999999999999999999 999999999999998988888877664333321111    111233333


Q ss_pred             eecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973          105 MSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP  149 (168)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~  149 (168)
                      +.+- ++|  .      ....+..++++.+   ..|=-|+||||-
T Consensus        99 iva~-ISP--~------r~~R~~aR~~~~~---~~FiEVyV~~pl  131 (197)
T COG0529          99 IVAF-ISP--Y------REDRQMARELLGE---GEFIEVYVDTPL  131 (197)
T ss_pred             EEEe-eCc--c------HHHHHHHHHHhCc---CceEEEEeCCCH
Confidence            3221 111  1      1233444555533   568889999996

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.66  E-value=2.1e-07  Score=71.54  Aligned_cols=42  Identities=29%  Similarity=0.361  Sum_probs=36.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...++++++ ++|+||||+...++..+.. .+++|.+|++|.++
T Consensus        74 ~~~~i~~~G-~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIG-PTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEEC-CCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            456777765 5999999999999999988 89999999999876

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.65  E-value=1.6e-08  Score=76.82  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=73.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      .+++.++-+-.|+||||++..|-.++.. .+.+..+|.+||.-.++..-.+++-..++.-.+.   ...++  +-|+|-+
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEv---MkqY~--LGPNGgI   91 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEV---MKQYQ--LGPNGGI   91 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHH---HHHhC--CCCCcch
Confidence            4566666789999999999999999999 8999999999997766554444333222211000   00111  1222211


Q ss_pred             CCCCCCcccCchhHHHHHH---HHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhhcc
Q 030973          111 VPSSSPVVWRGPMVMSALR---KMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ  163 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~---~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~~~  163 (168)
                      .       ..-......+.   .+++... +.+||||||||..+...++++...|.
T Consensus        92 ~-------TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsII  139 (366)
T KOG1532|consen   92 V-------TSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSII  139 (366)
T ss_pred             h-------hhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccch
Confidence            1       11123344455   5666666 88999999999976555555544443

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=98.63  E-value=5e-08  Score=79.77  Aligned_cols=74  Identities=22%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             eecCceeeccccCCccc-ccCCCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      |-|...+..+.+...+. ......|+|.|+|..+   |+||||++.+||..|++ .|+||+++   .+.|++...|+...
T Consensus        15 ~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gkk~l~~---LR~PSlg~~fg~kg   90 (524)
T cd00477          15 EPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQALNA-HGKKAIAC---LREPSLGPTFGIKG   90 (524)
T ss_pred             HhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH-hCCcEEEE---EecCCcCcccCCCC
Confidence            33444454444433221 1233589999999999   99999999999999999 99999988   88899999999887


Q ss_pred             CC
Q 030973           85 KP   86 (168)
Q Consensus        85 ~~   86 (168)
                      ..
T Consensus        91 ga   92 (524)
T cd00477          91 GA   92 (524)
T ss_pred             CC
Confidence            65

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.57  E-value=1.1e-06  Score=69.50  Aligned_cols=106  Identities=19%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceeecccCCeeeeec
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSM  107 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (168)
                      +...+|.+ .+.+|+||||++..|+..+.. .|++|.+|..|++.+-.. .++|.....  ..     ....++..+.+.
T Consensus        54 ~~~~~igi-~G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s~~~~gallgd~~r~--~~-----~~~~~~~~~r~~  124 (332)
T PRK09435         54 GNALRIGI-TGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKTRM--ER-----LSRHPNAFIRPS  124 (332)
T ss_pred             CCcEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCccccchhhhchHhHH--Hh-----hcCCCCeEEEec
Confidence            34667777 456899999999999999998 999999999999764321 122211110  00     001122222221


Q ss_pred             CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      +    .....    ......+.+.+..+....||+|||||++.-
T Consensus       125 ~----~~~~l----~~~a~~~~~~~~~~~~~g~d~viieT~Gv~  160 (332)
T PRK09435        125 P----SSGTL----GGVARKTRETMLLCEAAGYDVILVETVGVG  160 (332)
T ss_pred             C----Ccccc----cchHHHHHHHHHHHhccCCCEEEEECCCCc
Confidence            1    00000    112345555555555468999999999854

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.54  E-value=2.3e-07  Score=79.98  Aligned_cols=45  Identities=31%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSV   76 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~l   76 (168)
                      .++|+|+ +..|+||||+++.||..+....| ++|.+|++|.++...
T Consensus       185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA  230 (767)
T PRK14723        185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGA  230 (767)
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHH
Confidence            5677775 56789999999999998854266 699999999877544

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=98.52  E-value=1.5e-07  Score=77.75  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=50.1

Q ss_pred             CCCeEEEEecCCC---CCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973           29 GVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP   86 (168)
Q Consensus        29 ~~~~vI~v~s~kg---G~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~   86 (168)
                      ...|+|.|+|..+   |+||||++.+||..|++ .|+||  ||+ .+.|++...|+.....
T Consensus        52 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gk~~--i~~-LR~Pslg~~fg~kgga  108 (578)
T PRK13506         52 PKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNA-LGQKV--CAC-IRQPSMGPVFGVKGGA  108 (578)
T ss_pred             CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHH-hCCce--EEE-eccCCcCCccCCCCCC
Confidence            3589999999999   99999999999999999 99999  888 9999999999988776

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.52  E-value=1.7e-07  Score=69.74  Aligned_cols=101  Identities=12%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccCCCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSP  116 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  116 (168)
                      +-+.+|+||||-|..+...++. .|++|.+|.+||.+.++..-++.    ++.+...+.... ..+.+-|+      ...
T Consensus         7 VIGPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDPaNd~~~Y~~~v----~I~elit~edvm-~~~~LGPN------g~l   74 (290)
T KOG1533|consen    7 VIGPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDPANDNLPYECAV----DIRELITVEDVM-EELGLGPN------GAL   74 (290)
T ss_pred             EEcCCCCCccchhhhHHHHHHH-hCCceEEEecCCcccCCCCCCcc----cHHHHccHHHHH-HHhCCCCc------hhH
Confidence            4578999999999999999999 99999999999988665443332    222211111110 11111111      111


Q ss_pred             cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973          117 VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       117 ~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                      ..+. +.....++.+++.++.....|+|+|||..
T Consensus        75 ~yc~-E~l~~~idwl~~~l~~~~~~Y~lFDcPGQ  107 (290)
T KOG1533|consen   75 KYCM-EYLEANIDWLLEKLKPLTDHYVLFDCPGQ  107 (290)
T ss_pred             HHHH-HHHHhhhHHHHHHhhhccCcEEEEeCCCc
Confidence            1111 22333445566666634788999999986

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=98.51  E-value=1e-06  Score=70.35  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc----eeecccCCee
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----MVPIENYGVK  103 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~  103 (168)
                      .....++.+++++ .+||||+++-||..+-+ +|+||.+||+|+.++.+.    .+..-.+.-...    ..........
T Consensus        70 ~~~~~~vmvvG~v-DSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~----pPg~ISL~~~~s~~~~L~~l~~~~~~  143 (398)
T COG1341          70 AGKVGVVMVVGPV-DSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIG----PPGFISLAFPESPVISLSELEPFTLY  143 (398)
T ss_pred             ccCCcEEEEECCc-CcCHHHHHHHHHHHHhh-cCceEEEEeCCCCCcccC----CCceEEeecccCCCCCHHHcCccceE
Confidence            3345666666655 79999999999999999 999999999999775421    111111110000    0111111222


Q ss_pred             eeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973          104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP  149 (168)
Q Consensus       104 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~  149 (168)
                      +  .|.+.+....     .........+.+.++ +.-|+||||||.
T Consensus       144 F--vG~isP~~~~-----~~~i~~v~rL~~~a~-~~~~~ilIdT~G  181 (398)
T COG1341         144 F--VGSISPQGFP-----GRYIAGVARLVDLAK-KEADFILIDTDG  181 (398)
T ss_pred             E--EeccCCCCCh-----HHHHHHHHHHHHHhh-ccCCEEEEcCCC
Confidence            2  2222222221     234456677777777 667999999998

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.50  E-value=7.1e-09  Score=78.40  Aligned_cols=39  Identities=28%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973           39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM   78 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~   78 (168)
                      +..|+||||.+.++..++.. .|++|.+|.+||....+..
T Consensus         3 GpaGSGKTT~~~~~~~~~~~-~~~~~~~vNLDPa~~~~~y   41 (238)
T PF03029_consen    3 GPAGSGKTTFCKGLSEWLES-NGRDVYIVNLDPAVENLPY   41 (238)
T ss_dssp             ESTTSSHHHHHHHHHHHHTT-T-S-EEEEE--TT-S--SS
T ss_pred             CCCCCCHHHHHHHHHHHHHh-ccCCceEEEcchHhccccc
Confidence            56799999999999999999 9999999999998755433

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.47  E-value=4.2e-07  Score=72.77  Aligned_cols=45  Identities=38%  Similarity=0.457  Sum_probs=35.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSV   76 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~l   76 (168)
                      ..++++ .+..|+||||+++.||..+....| ++|.+|.+|.+..+-
T Consensus       137 g~ii~l-vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga  182 (374)
T PRK14722        137 GGVFAL-MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGG  182 (374)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccH
Confidence            556665 677899999999999998765246 699999999986443

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=98.46  E-value=1.6e-07  Score=70.11  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      |.|++...|+|||+++++|++.|.+ +|++|.++
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~   34 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGY   34 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEE
Confidence            6788999999999999999999999 99999874

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.39  E-value=5.7e-07  Score=72.04  Aligned_cols=89  Identities=25%  Similarity=0.291  Sum_probs=60.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM  107 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (168)
                      +.++|+++++ -||||||+.+.||+.+.  . ..+||-+|-+|.++-+...-+..-.+     .        -++.+.- 
T Consensus       202 ~~~vi~LVGP-TGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~-----i--------m~vp~~v-  265 (407)
T COG1419         202 QKRVIALVGP-TGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYAD-----I--------MGVPLEV-  265 (407)
T ss_pred             cCcEEEEECC-CCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHH-----H--------hCCceEE-
Confidence            3778888765 48999999999999999  4 67899999999988554443321111     0        0111110 


Q ss_pred             CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973          108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                                    -..+..|.+.+..+  .+||+|+|||..-
T Consensus       266 --------------v~~~~el~~ai~~l--~~~d~ILVDTaGr  292 (407)
T COG1419         266 --------------VYSPKELAEAIEAL--RDCDVILVDTAGR  292 (407)
T ss_pred             --------------ecCHHHHHHHHHHh--hcCCEEEEeCCCC
Confidence                          11245666666666  4789999999874

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.39  E-value=1.2e-06  Score=61.28  Aligned_cols=109  Identities=21%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceee----cccCCeee
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP----IENYGVKC  104 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  104 (168)
                      ++.-.+.++.+-+|+||||+|++|...|-+ +|+-...+|.|--++++..-++...+.....+..+-.    ....++-+
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~q-rgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic  106 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQ-RGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC  106 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHh-cCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence            334445566788999999999999999999 9999999999999989988888776653333222111    11223333


Q ss_pred             eecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973          105 MSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                      +..- +        .+.....++.++++.+   ..|=-|++|+|-.
T Consensus       107 iaSl-I--------SPYR~dRdacRel~~~---~~FiEvfmdvpl~  140 (207)
T KOG0635|consen  107 IASL-I--------SPYRKDRDACRELLPE---GDFIEVFMDVPLE  140 (207)
T ss_pred             eehh-c--------CchhccHHHHHHhccC---CCeEEEEecCcHH
Confidence            3221 1        1112345667777654   5577789999854

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.34  E-value=1.7e-06  Score=63.57  Aligned_cols=108  Identities=15%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      ++.-.++-+..|+||||.|.++-.+.-. .|+++-+|.+||.+    ..|+.+...++.+...+...... +++-|+|  
T Consensus         2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~-~gRs~~vVNLDPAa----e~f~y~~~iDiRdlIsvdDVmEd-l~~GPNG--   73 (273)
T KOG1534|consen    2 MRYAQLVMGPAGSGKSTYCSSMYEHCET-VGRSVHVVNLDPAA----EHFNYPVTIDIRDLISVDDVMED-LDLGPNG--   73 (273)
T ss_pred             CceeEEEEccCCCCcchHHHHHHHHHHh-hCceeEEeecCHHH----HhhCCcccccHHHhccHHHHHHH-hccCCCc--
Confidence            3445566788899999999999999988 99999999999976    33555555555443332222211 3333333  


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                          .-..+. +...+.++.+-++...-+-||+|+|||..+
T Consensus        74 ----gLv~cm-Eyl~~NldwL~~~~Gd~eddylifDcPGQI  109 (273)
T KOG1534|consen   74 ----GLVYCM-EYLLENLDWLEEEIGDVEDDYLIFDCPGQI  109 (273)
T ss_pred             ----cchhHH-HHHHHHHHHHHhhccCccCCEEEEeCCCee
Confidence                211111 223344555544443235689999999864

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.33  E-value=7.5e-06  Score=63.19  Aligned_cols=104  Identities=23%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceeecc-cCCeeee
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIE-NYGVKCM  105 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  105 (168)
                      .....+|.++ +.+|+||||+.-.|...|.+ .|+||-+|--||..|-.. .++|-.        ....... .+++.+-
T Consensus        48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGDR--------iRM~~~~~~~~vFiR  117 (323)
T COG1703          48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGDR--------IRMQRLAVDPGVFIR  117 (323)
T ss_pred             CCCCcEEEec-CCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccccH--------hhHHhhccCCCeEEe
Confidence            4558899995 67899999999999999999 999999999999764321 223311        1111111 2444444


Q ss_pred             ecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973          106 SMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP  149 (168)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~  149 (168)
                      |..    +...   . -..+....+++..+....||+|||.|-.
T Consensus       118 s~~----srG~---l-GGlS~at~~~i~~ldAaG~DvIIVETVG  153 (323)
T COG1703         118 SSP----SRGT---L-GGLSRATREAIKLLDAAGYDVIIVETVG  153 (323)
T ss_pred             ecC----CCcc---c-hhhhHHHHHHHHHHHhcCCCEEEEEecC
Confidence            321    1111   0 1233444555554444689999999876

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.28  E-value=4.6e-06  Score=68.76  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=37.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.|.|++.++|+||||++++|++.|++ +|++|..+...+
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~-~G~~V~~fK~Gp   42 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVGP   42 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCCcceeecCC
Confidence            6789999999999999999999999999 999999998854

>cd01394 radB RadB

Probab=98.28  E-value=6.2e-06  Score=61.34  Aligned_cols=41  Identities=29%  Similarity=0.405  Sum_probs=35.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..+..+.+.+|+||||++.++|..++. .|.+|++||++...
T Consensus        19 g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~   59 (218)
T cd01394          19 GTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS   59 (218)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence            445556789999999999999999999 89999999998543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.26  E-value=1.3e-06  Score=62.79  Aligned_cols=41  Identities=32%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|.+ .+-+|+||||++..|+..+.. .|.+|.+||.|...
T Consensus         4 g~~i~~-~G~~GsGKST~a~~la~~l~~-~g~~v~~id~D~~~   44 (175)
T PRK00889          4 GVTVWF-TGLSGAGKTTIARALAEKLRE-AGYPVEVLDGDAVR   44 (175)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEcCccHH
Confidence            455555 588899999999999999988 89999999999754

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.26  E-value=2.3e-06  Score=70.66  Aligned_cols=44  Identities=39%  Similarity=0.493  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPS   75 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~~   75 (168)
                      +++++++ +..|+||||++..||..+....| ++|.+|++|+++.+
T Consensus       256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Rig  300 (484)
T PRK06995        256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG  300 (484)
T ss_pred             CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchh
Confidence            5677775 56699999999999998864255 59999999997643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.25  E-value=2.9e-06  Score=64.37  Aligned_cols=103  Identities=25%  Similarity=0.330  Sum_probs=58.9

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc-cccccCCCCCccccCceee-cccCCeeeee
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVP-IENYGVKCMS  106 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~  106 (168)
                      .+..+|++ ++.+|+||||+.-.|+..+.+ .|+||-++-.||..|-.. .+||        |...... ...+++++=|
T Consensus        27 g~a~~iGi-TG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLG--------DRiRM~~~~~d~~vfIRS   96 (266)
T PF03308_consen   27 GRAHVIGI-TGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLG--------DRIRMQELSRDPGVFIRS   96 (266)
T ss_dssp             T-SEEEEE-EE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS----------GGGCHHHHTSTTEEEEE
T ss_pred             CCceEEEe-eCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcccc--------cHHHhcCcCCCCCEEEee
Confidence            34789999 567899999999999999999 999999999999764322 2333        1111221 1234555544


Q ss_pred             cCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973          107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP  149 (168)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~  149 (168)
                      ..    .....    -.......+.+..+..-.||+|||.|-.
T Consensus        97 ~a----tRG~l----GGls~~t~~~v~ll~aaG~D~IiiETVG  131 (266)
T PF03308_consen   97 MA----TRGSL----GGLSRATRDAVRLLDAAGFDVIIIETVG  131 (266)
T ss_dssp             E-------SSH----HHHHHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred             cC----cCCCC----CCccHhHHHHHHHHHHcCCCEEEEeCCC
Confidence            32    11110    1233444445444443679999999875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.19  E-value=1.1e-05  Score=60.32  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..+..+++.+|+|||++|.++|...++ .|.+|++||++
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e   60 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE   60 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence            445566789999999999999999999 99999999999

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.16  E-value=1.6e-05  Score=58.65  Aligned_cols=38  Identities=32%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+..+.+.+|+|||+++..++...++ .|.+|++||++.
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~   50 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG   50 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence            44555679999999999999999999 899999999984

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.15  E-value=1.1e-05  Score=57.13  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |+|+ +..|+||||++..|...+.. .|+||.+|..|..
T Consensus         2 i~i~-G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~~~~   38 (155)
T TIGR00176         2 LQIV-GPKNSGKTTLIERLVKALKA-RGYRVATIKHDHH   38 (155)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence            5555 45699999999999999998 8999999998753

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=4.6e-06  Score=67.88  Aligned_cols=102  Identities=19%  Similarity=0.230  Sum_probs=67.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      ++=+|+| .+-.||||||--+.+|++|-+ .+.|||+.-||+.+.+.-.-|+...++ +....   .   .-+.+...|+
T Consensus       377 rPYVi~f-vGVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTFRsGAvEQLrtHv~r-l~~l~---~---~~v~lfekGY  447 (587)
T KOG0781|consen  377 RPYVISF-VGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTHVER-LSALH---G---TMVELFEKGY  447 (587)
T ss_pred             CCeEEEE-EeecCccccchHHHHHHHHHh-CCceEEEEeccchhhhHHHHHHHHHHH-HHHhc---c---chhHHHhhhc
Confidence            4556666 567899999999999999999 999999999999887655555543322 10000   0   1111111121


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                            .     -.......+.+++.+.+.||+|+|||...+
T Consensus       448 ------g-----kd~a~vak~AI~~a~~~gfDVvLiDTAGR~  478 (587)
T KOG0781|consen  448 ------G-----KDAAGVAKEAIQEARNQGFDVVLIDTAGRM  478 (587)
T ss_pred             ------C-----CChHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence                  1     112345567777777688999999999875

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.07  E-value=4.3e-06  Score=59.15  Aligned_cols=104  Identities=18%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCc----eeecccCCeeeeecC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----MVPIENYGVKCMSMG  108 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~  108 (168)
                      .+.++++.+|+||||+|..|...|.. .|.+|.++|.|.-...+..-++...+........    .......++.++...
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~-~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~   81 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFA-RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAF   81 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence            35666889999999999999999999 9999999999987766655554432211111000    011112334333321


Q ss_pred             ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCC
Q 030973          109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP  149 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~  149 (168)
                         -.      +.....+..++.+..   ..|=.|.+|||-
T Consensus        82 ---is------p~~~~R~~~R~~~~~---~~f~eVyv~~~~  110 (156)
T PF01583_consen   82 ---IS------PYREDREWARELIPN---ERFIEVYVDCPL  110 (156)
T ss_dssp             ------------SHHHHHHHHHHHHT---TEEEEEEEES-H
T ss_pred             ---cc------CchHHHHHHHHhCCc---CceEEEEeCCCH
Confidence               00      112344555666543   358889999985

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.07  E-value=1.2e-05  Score=58.16  Aligned_cols=40  Identities=20%  Similarity=0.096  Sum_probs=35.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++.+.+|+|||+++.+++...++ .|.+|+++.++.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~   41 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEE   41 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHH
Confidence            456889999999999999999999 9999999999875433

A related protein is found in archaea.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.06  E-value=6.2e-05  Score=53.55  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=36.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +++++|++.| ++||||+.-.+...|.+ +|+||.+|=-....
T Consensus         2 ~~Il~ivG~k-~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~   42 (161)
T COG1763           2 MKILGIVGYK-NSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD   42 (161)
T ss_pred             CcEEEEEecC-CCChhhHHHHHHHHHHh-CCcEEEEEEecCCC
Confidence            7899997655 78999999999999999 99999999887654

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=98.03  E-value=3.3e-05  Score=62.89  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=35.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |++|+|++.| |+||||++.+|...|.. +|+||.+|=.+.
T Consensus         1 MkVi~IvG~s-gSGKTTLiekLI~~L~~-rG~rVavIKH~h   39 (452)
T PRK14495          1 MRVYGIIGWK-DAGKTGLVERLVAAIAA-RGFSVSTVKHSH   39 (452)
T ss_pred             CcEEEEEecC-CCCHHHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            5789998875 99999999999999999 999999987754

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=98.03  E-value=2.3e-05  Score=59.01  Aligned_cols=36  Identities=25%  Similarity=0.167  Sum_probs=33.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ++.+.|++...++|||++++.|+..|.+ +|.+|-++
T Consensus         2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~~-~g~~v~~~   37 (231)
T PRK12374          2 LKRFFITGTDTSVGKTVVSRALLQALAS-QGKTVAGY   37 (231)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence            4579999999999999999999999999 99999886

>PHA02542 41 41 helicase; Provisional

Probab=98.03  E-value=3.1e-06  Score=70.02  Aligned_cols=46  Identities=17%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~   77 (168)
                      ...+.++++.+|+||||++.|+|...++ .|++|++++++.....+.
T Consensus       189 ~G~LiiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ql~  234 (473)
T PHA02542        189 RKTLNVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEEVIA  234 (473)
T ss_pred             CCcEEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHH
Confidence            4567788999999999999999999998 999999999998665443

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=98.01  E-value=1.7e-05  Score=55.21  Aligned_cols=41  Identities=24%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE-EEeCCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG-LLDADVYGP   74 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl-liD~D~~~~   74 (168)
                      ++|+|++.+ |+||||++..|...|.+ +|+||. +.|.|..++
T Consensus         1 pvv~VvG~~-~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~g~~   42 (140)
T PF03205_consen    1 PVVQVVGPK-NSGKTTLIRKLINELKR-RGYRVAVIKHTDHGQF   42 (140)
T ss_dssp             -EEEEEEST-TSSHHHHHHHHHHHHHH-TT--EEEEEE-STTST
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHhH-cCCceEEEEEccCCCc
Confidence            478888875 99999999999999999 999999 889988443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.01  E-value=2.5e-05  Score=54.60  Aligned_cols=40  Identities=30%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++.+++|+||||++..++..++. .|.+|++++++.....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~   41 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEE   41 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHH
Confidence            355788999999999999999999 9999999999876533

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.93  E-value=9e-05  Score=61.56  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |.|++...++|||++++.|++.|.+ .|.+|..+-.
T Consensus         1 ~~I~GT~t~vGKT~v~~~L~~~l~~-~G~~v~~fKp   35 (475)
T TIGR00313         1 IMVVGTTSSAGKSTLTAGLCRILAR-RGYRVAPFKS   35 (475)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEECC
Confidence            4688899999999999999999999 9999997654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.92  E-value=6.2e-05  Score=56.64  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+.++.+.+|+|||+++.++++..++ .|.+|++++++..
T Consensus        25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~   64 (234)
T PRK06067         25 PSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT   64 (234)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence            344444689999999999999999888 8999999999853

>PRK04296 thymidine kinase; Provisional

Probab=97.91  E-value=0.00026  Score=51.71  Aligned_cols=34  Identities=24%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      .|.++.+..|+||||.+..++..+.. .|++|+++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~   36 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVF   36 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEE
Confidence            46667788899999999999999999 99999999

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.91  E-value=3.6e-05  Score=58.19  Aligned_cols=42  Identities=29%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH-----------hCCCeEEEEeCCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS-----------KCQLKVGLLDADVYGP   74 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~-----------~~g~rVlliD~D~~~~   74 (168)
                      .++++.+.||+|||+++..+|.+.|.           ..+.+|++++++-...
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~   54 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE   54 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence            46788999999999999999998773           1356899999987553

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.90  E-value=0.0002  Score=50.86  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=29.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .|.|+.+. |.||||.|..+|...+. .|+||++|=+
T Consensus         4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~-~g~~v~~vQF   38 (159)
T cd00561           4 LIQVYTGN-GKGKTTAALGLALRALG-HGYRVGVVQF   38 (159)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHHH-CCCeEEEEEE
Confidence            45565555 99999999999999999 9999999544

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.88  E-value=0.00012  Score=55.08  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +..+.+..|+||||+|.+++..+++ .|.++++|+++...
T Consensus        26 ~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~   64 (230)
T PRK08533         26 LILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTT   64 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCH
Confidence            5555788999999999999999988 89999999988644

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.86  E-value=9.4e-05  Score=49.81  Aligned_cols=40  Identities=33%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.+ .+..|+||||++..+|..+.. .++.++.++++...
T Consensus         3 ~~~~l-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~~~~~   42 (148)
T smart00382        3 EVILI-VGPPGSGKTTLARALARELGP-PGGGVIYIDGEDIL   42 (148)
T ss_pred             CEEEE-ECCCCCcHHHHHHHHHhccCC-CCCCEEEECCEEcc
Confidence            34555 456999999999999999988 66689999998755

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=4.7e-05  Score=61.24  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...+..+++.+|+||||+-..++..+|+ ++ |||+|......
T Consensus        92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~  132 (456)
T COG1066          92 PGSVILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESL  132 (456)
T ss_pred             cccEEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCH
Confidence            3456666999999999999999999999 77 99999998744

>PRK08233 hypothetical protein; Provisional

Probab=97.85  E-value=9.2e-05  Score=53.18  Aligned_cols=38  Identities=26%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|++.+ .+|+||||+|..|+..+.   +..++..|.+..
T Consensus         3 ~~iI~I~G-~~GsGKtTla~~L~~~l~---~~~~~~~d~~~~   40 (182)
T PRK08233          3 TKIITIAA-VSGGGKTTLTERLTHKLK---NSKALYFDRYDF   40 (182)
T ss_pred             ceEEEEEC-CCCCCHHHHHHHHHhhCC---CCceEEECCEEc
Confidence            45666655 559999999999998874   347888887753

>PRK07667 uridine kinase; Provisional

Probab=97.78  E-value=6.5e-05  Score=55.04  Aligned_cols=41  Identities=20%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..+|++ ++.+|+||||+|..|+..+.. .|.+|.++++|-..
T Consensus        17 ~~iIgI-~G~~gsGKStla~~L~~~l~~-~~~~~~~i~~Dd~~   57 (193)
T PRK07667         17 RFILGI-DGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDYI   57 (193)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEEcCccc
Confidence            345555 789999999999999999998 99999999999743

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.77  E-value=0.00026  Score=50.93  Aligned_cols=36  Identities=33%  Similarity=0.484  Sum_probs=30.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .|.++.+ .|.||||.|..+|..++. .|+||+++=+=
T Consensus         7 li~v~~g-~GkGKtt~a~g~a~ra~~-~g~~v~ivQFl   42 (173)
T TIGR00708         7 IIIVHTG-NGKGKTTAAFGMALRALG-HGKKVGVIQFI   42 (173)
T ss_pred             EEEEECC-CCCChHHHHHHHHHHHHH-CCCeEEEEEEe
Confidence            4555444 899999999999999999 99999998554

Alternate name: corrinoid adenosyltransferase.

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=97.76  E-value=1.3e-05  Score=50.18  Aligned_cols=27  Identities=56%  Similarity=0.959  Sum_probs=21.8

Q ss_pred             cEEEEeCCCCCCHHHHHHHhhcccCCC
Q 030973          141 DILVIDMPPGTGDAQLTTTQTLQLSGI  167 (168)
Q Consensus       141 D~IiiD~p~~~~~~~~~~~~~~~~~~~  167 (168)
                      ||+|||+|||.+|..+.+++.++++|+
T Consensus         2 D~LiiD~PPGTgD~~l~~~~~~~~~g~   28 (81)
T PF10609_consen    2 DYLIIDLPPGTGDEHLTLMQYLPIDGA   28 (81)
T ss_dssp             CEEEEE--SCSSSHHHHHHHHH--SEE
T ss_pred             CEEEEeCCCCCCcHHHHHHHhCCCCeE
Confidence            899999999999999999999998875

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.75  E-value=0.00017  Score=56.92  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++++.+ .+.+|+||||+|.+++...++ .|.+|++||+..
T Consensus        55 G~iteI-~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~   93 (321)
T TIGR02012        55 GRIIEI-YGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEH   93 (321)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccc
Confidence            345555 557899999999999999999 999999999975

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.72  E-value=0.00014  Score=60.05  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=35.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+.++.+.+|+||||++..+|..+++ .|.+|++|+++..
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees  119 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEES  119 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcccc
Confidence            446666889999999999999999998 8999999999753

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.70  E-value=0.00018  Score=56.82  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|..+.+.+|+||||+|.+++...++ .|.+|++||+..
T Consensus        56 ~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~   93 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEH   93 (325)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccc
Confidence            34445668999999999999999999 999999999975

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.69  E-value=0.00014  Score=58.53  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+.++++.+|+||||++..+|..+++ .|.+|++|+.+..
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs  121 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEES  121 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcC
Confidence            346666889999999999999999999 8899999998753

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=97.69  E-value=0.00018  Score=62.37  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=34.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++.|.+.+...|+|||+++..|++.|.+ +|.||-.+-
T Consensus         2 ~k~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fK   38 (684)
T PRK05632          2 SRSIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFK   38 (684)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeC
Confidence            5679999999999999999999999999 999999976

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.66  E-value=0.00027  Score=53.41  Aligned_cols=41  Identities=15%  Similarity=0.004  Sum_probs=35.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..+.++.+.+|+|||++|.++++..++ .|.+|++|.++...
T Consensus        21 gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~   61 (237)
T TIGR03877        21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHP   61 (237)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCH
Confidence            345555889999999999999998888 99999999998744

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.65  E-value=0.00012  Score=55.06  Aligned_cols=38  Identities=18%  Similarity=0.119  Sum_probs=33.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      |++|.|++. .|+||||++.+|+..|.+ .|+||.+|..+
T Consensus         1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~-~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGF-KDSGKTTLIEKILKNLKE-RGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECC-CCChHHHHHHHHHHHHHh-CCCeEEEEEec
Confidence            578888887 599999999999999999 99999999653

>TIGR00416 sms DNA repair protein RadA

Probab=97.64  E-value=0.00015  Score=59.87  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=35.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+.++++.+|+||||++..+|..+++ .|.+|++|+++..
T Consensus        94 GsvilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs  133 (454)
T TIGR00416        94 GSLILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEES  133 (454)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCC
Confidence            456667899999999999999999999 8899999999753

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK06696 uridine kinase; Validated

Probab=97.63  E-value=0.00013  Score=54.53  Aligned_cols=43  Identities=21%  Similarity=0.116  Sum_probs=35.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      +.|..+++.+|+||||+|..|+..|.. .|.+|+.+.+|-...+
T Consensus        22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~-~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         22 PLRVAIDGITASGKTTFADELAEEIKK-RGRPVIRASIDDFHNP   64 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeccccccCC
Confidence            445555889999999999999999988 8999999888865533

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.61  E-value=0.00052  Score=49.46  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +++++|+ +..|+||||++..|...|.. .|.||-.|-.+..
T Consensus         6 ~~ii~iv-G~sgsGKTTLi~~li~~l~~-~g~~vg~Ik~~~~   45 (173)
T PRK10751          6 IPLLAIA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHH   45 (173)
T ss_pred             ceEEEEE-CCCCChHHHHHHHHHHHHhh-cCCeEEEEEEcCC
Confidence            5666665 67899999999999999998 8999999976553

>PRK00784 cobyric acid synthase; Provisional

Probab=97.60  E-value=0.00036  Score=58.22  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++.|.|++...|+|||++++.|++.|.+ +|.||..+-
T Consensus         2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~K   38 (488)
T PRK00784          2 AKALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFK   38 (488)
T ss_pred             CceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEeccc
Confidence            6779999999999999999999999999 999998663

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.58  E-value=0.00023  Score=56.00  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=32.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~   72 (168)
                      ...|.-+.+.+|+|||++|..+|...+.     ..+.+|++||+...
T Consensus        95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~  141 (313)
T TIGR02238        95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT  141 (313)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence            4466667889999999999999976542     03679999999864

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK05973 replicative DNA helicase; Provisional

Probab=97.58  E-value=0.00013  Score=55.19  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...+.++++.+|+|||+++.++|...++ .|++|+++.++...
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~  104 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTE  104 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCH
Confidence            3456677899999999999999999999 89999999998754

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.58  E-value=0.00016  Score=60.23  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...+.++++.+|+||||++.+++...++ .|.+|+++-++...
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~  303 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESR  303 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCH
Confidence            4566677899999999999999999999 99999999999854

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.57  E-value=0.0004  Score=51.75  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC------CeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ------LKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g------~rVlliD~D~~   72 (168)
                      .+++.+ .+.+|+|||+++.++|...+. .+      .+|++||++..
T Consensus        19 g~v~~I-~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~   64 (226)
T cd01393          19 GRITEI-FGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGA   64 (226)
T ss_pred             CcEEEE-eCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCC
Confidence            445555 679999999999999999887 77      89999999853

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.57  E-value=0.00021  Score=50.79  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |++|+|++. .|+||||++..|...+.. .|++|-+|-.|...
T Consensus         1 m~vi~i~G~-~gsGKTTli~~L~~~l~~-~g~~V~~iK~~~~~   41 (159)
T cd03116           1 MKVIGFVGY-SGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD   41 (159)
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHH-cCCcEEEEEecCCc
Confidence            467888766 599999999999999998 99999999877644

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=97.55  E-value=0.00047  Score=51.58  Aligned_cols=36  Identities=28%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ++.+.|++..-|+|||.+++.|+.++.. +|++|...
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~   37 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGY   37 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHh-CCCeeEEE
Confidence            6889999999999999999999999999 99998864

>PF13479 AAA_24: AAA domain

Probab=97.55  E-value=0.00043  Score=51.48  Aligned_cols=32  Identities=28%  Similarity=0.323  Sum_probs=25.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +-.++.+.+|+||||++..+         .++|+||+|...
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~   35 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASL---------PKPLFIDTENGS   35 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCc
Confidence            34455789999999987555         689999999753

>PF13245 AAA_19: Part of AAA domain

Probab=97.54  E-value=0.0002  Score=44.52  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhC----CCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~----g~rVlliD~D   70 (168)
                      +.++.+.+|+|||+++.+++..+.. .    +++|+++-..
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~~~~vlv~a~t   51 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELLA-ARADPGKRVLVLAPT   51 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEECCC
Confidence            5666889999999999999998886 5    8999999655

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.54  E-value=0.00015  Score=53.19  Aligned_cols=45  Identities=33%  Similarity=0.270  Sum_probs=36.7

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++.+|.++ +.+|+||||++..|+..+.. .|..++++|.|.....
T Consensus        22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~   66 (198)
T PRK03846         22 HKGVVLWFT-GLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHG   66 (198)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhh
Confidence            335666664 67899999999999999988 8999999999875533

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.53  E-value=0.00052  Score=56.04  Aligned_cols=45  Identities=38%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGP   74 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~   74 (168)
                      ..+.+|+++ +..|+||||+...||..+.... +.+|.+|-+|....
T Consensus       189 ~~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri  234 (420)
T PRK14721        189 EQGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI  234 (420)
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence            346777775 5779999999999998664313 47888898888663

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.52  E-value=0.0012  Score=48.18  Aligned_cols=37  Identities=30%  Similarity=0.350  Sum_probs=30.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|.++ ...|-||||.|..+|...+. .|+||++|=+=-
T Consensus        24 ~v~v~-~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQFlK   60 (191)
T PRK05986         24 LLIVH-TGNGKGKSTAAFGMALRAVG-HGKKVGVVQFIK   60 (191)
T ss_pred             eEEEE-CCCCCChHHHHHHHHHHHHH-CCCeEEEEEEec
Confidence            44443 56688999999999999999 999999997643

>PRK04328 hypothetical protein; Provisional

Probab=97.52  E-value=0.00055  Score=52.17  Aligned_cols=40  Identities=15%  Similarity=0.017  Sum_probs=33.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+|||+++.++++..++ .|.++++|+++...
T Consensus        24 s~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~   63 (249)
T PRK04328         24 NVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHP   63 (249)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCH
Confidence            34444678889999999999999888 89999999998744

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.49  E-value=0.00016  Score=54.91  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      -.++.+++|+|||+++.++|..+.+ .|++|+++++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~  135 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV  135 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH
Confidence            4566889999999999999999999 9999999975

>PRK15453 phosphoribulokinase; Provisional

Probab=97.49  E-value=0.00026  Score=54.71  Aligned_cols=42  Identities=19%  Similarity=0.414  Sum_probs=36.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ..+|+| .+.+|+||||++..|+..+.. .+.++.+|+.|..+.
T Consensus         5 ~piI~I-tG~SGsGKTTva~~l~~if~~-~~~~~~vi~~D~yh~   46 (290)
T PRK15453          5 HPIIAV-TGSSGAGTTTVKRAFEKIFRR-ENINAAVVEGDSFHR   46 (290)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCCeEEEecccccc
Confidence            566776 678899999999999999988 888999999998774

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.49  E-value=0.00021  Score=53.59  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~   72 (168)
                      .+..+.+.+|+|||+++.+++..... .      +.+|++||++..
T Consensus        20 ~i~~i~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~   64 (235)
T cd01123          20 SITEIFGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGT   64 (235)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCC
Confidence            44455788999999999999987654 4      389999999874

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.48  E-value=0.0002  Score=54.88  Aligned_cols=40  Identities=23%  Similarity=0.170  Sum_probs=35.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ...+.++++.+|+|||++|.++|...++ .|.+|++|+++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee   74 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES   74 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence            3456666899999999999999999999 899999999985

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.48  E-value=0.00012  Score=51.50  Aligned_cols=39  Identities=33%  Similarity=0.247  Sum_probs=33.9

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .++.+.+|+||||+|..|+..+.. .|.+++++|.|....
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~-~g~~~~~i~~d~~r~   40 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVRH   40 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEcCHHHHH
Confidence            345689999999999999999998 899999999987553

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.44  E-value=0.0002  Score=51.88  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++..|+||||+|..|+..+.. .|.++.+|.+|-..
T Consensus         3 ~i~G~sgsGKttla~~l~~~l~~-~~~~~~~i~~Ddf~   39 (179)
T cd02028           3 GIAGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYY   39 (179)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEehhhcc
Confidence            34789999999999999999998 89999999999765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=97.43  E-value=0.001  Score=56.87  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +++|+|++. .|+||||+...|...|.+ +|+||.+|-.+.+.
T Consensus        10 ~~vi~ivG~-s~sGKTTlie~li~~L~~-~G~rVavIKh~~h~   50 (597)
T PRK14491         10 IPLLGFCAY-SGTGKTTLLEQLIPELNQ-RGLRLAVIKHAHHN   50 (597)
T ss_pred             ccEEEEEcC-CCCCHHHHHHHHHHHHHh-CCceEEEEEcCCcC
Confidence            788899764 799999999999999999 99999999986543

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.42  E-value=0.00056  Score=51.08  Aligned_cols=39  Identities=23%  Similarity=0.176  Sum_probs=31.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~   73 (168)
                      +.++.+.+|+|||+++.++++..++ . |.+|++|.++...
T Consensus        21 ~~li~G~~GsGKT~l~~q~l~~~~~-~~ge~vlyvs~ee~~   60 (226)
T PF06745_consen   21 VVLISGPPGSGKTTLALQFLYNGLK-NFGEKVLYVSFEEPP   60 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH-HHT--EEEEESSS-H
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHhhh-hcCCcEEEEEecCCH
Confidence            4444788999999999999999999 8 9999999998754

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.41  E-value=0.0002  Score=54.47  Aligned_cols=37  Identities=35%  Similarity=0.461  Sum_probs=33.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .++.|.+|+||||+|..|+..+.. .|.+|.+++.|.-
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~-~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE-KNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-cCCceEEEccHHH
Confidence            466889999999999999999998 8999999998864

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=97.39  E-value=0.00022  Score=56.65  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=35.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ++++.+-+|+||||++..|+..|....|.+|.++|.|-.-
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            4678899999999999999999983389999999999854

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.39  E-value=0.0026  Score=45.05  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.++.-|+||||+...+...  . .|.++.++-.+...
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~--~-~~~~~~~i~~~~G~   38 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE--Q-HGRKIAVIENEFGE   38 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc--c-cCCcEEEEecCCCc
Confidence            4456778899999999988765  3 57888887776533

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.36  E-value=0.0008  Score=51.46  Aligned_cols=46  Identities=17%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM   78 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~   78 (168)
                      .+++++ .+.+|+|||+++.++++..++ .|.+|++|.++.....+..
T Consensus        23 g~~~lI-~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~   68 (260)
T COG0467          23 GSVVLI-TGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE   68 (260)
T ss_pred             CcEEEE-EcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence            445554 789999999999999999999 9999999999986644443

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=97.36  E-value=0.001  Score=45.90  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |..++| +|||+++..|+..|.+ +|.+|..+....+
T Consensus         4 ~~~~~~-~Gkt~~~~~l~~~l~~-~~~~v~~~kp~~~   38 (134)
T cd03109           4 FGTGTD-IGKTVATAILARALKE-KGYRVAPLKPVQT   38 (134)
T ss_pred             EeCCCC-cCHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            344555 9999999999999999 9999999988765

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.35  E-value=0.0028  Score=45.04  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +..|.+ ++.+|+||||++..+|-.|.+ .|++|--+=+-
T Consensus         5 ~mki~I-TG~PGvGKtTl~~ki~e~L~~-~g~kvgGf~t~   42 (179)
T COG1618           5 AMKIFI-TGRPGVGKTTLVLKIAEKLRE-KGYKVGGFITP   42 (179)
T ss_pred             ceEEEE-eCCCCccHHHHHHHHHHHHHh-cCceeeeEEee
Confidence            334555 789999999999999999999 99998765443

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=97.34  E-value=0.00086  Score=52.64  Aligned_cols=49  Identities=27%  Similarity=0.383  Sum_probs=37.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHH---hCC------CeEEEEeCCCCCCCccccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALAS---KCQ------LKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~---~~g------~rVlliD~D~~~~~l~~~~   80 (168)
                      -+..++.+.||+||||++..|..+++.   ..|      .+|++|.+....+++-..|
T Consensus        89 g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl  146 (402)
T COG3598          89 GYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERL  146 (402)
T ss_pred             CeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHH
Confidence            355666799999999999999988885   123      4799999988776654443

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.34  E-value=0.00037  Score=53.44  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~   72 (168)
                      ..+.++.+.+|+||||++.++|..++. . |.+|+++.++..
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~~~-~~g~~vl~iS~E~~   70 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLIT-QHGVRVGTISLEEP   70 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHH-hcCceEEEEEcccC
Confidence            346667899999999999999999988 6 999999999864

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=97.34  E-value=0.0024  Score=50.69  Aligned_cols=46  Identities=22%  Similarity=0.088  Sum_probs=38.6

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      ..++++.++++ --+||||++.-|-.+..+ .|+|.+.+|+|+.++++
T Consensus       101 ~~GPrv~vVGp-~d~GKsTl~r~L~nyavk-~gr~Plfv~LDvgQ~si  146 (415)
T KOG2749|consen  101 SYGPRVMVVGP-TDVGKSTLCRILLNYAVK-QGRRPLFVELDVGQGSI  146 (415)
T ss_pred             ccCCEEEEECC-CccchHHHHHHHHHHHHH-cCCcceEEEcCCCCCce
Confidence            34666777554 468999999999999999 89999999999999764

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.33  E-value=0.00039  Score=52.36  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~   73 (168)
                      .+.++++.+|+|||+++.+++..++. . |.+|+++.++...
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~~~   54 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEMSK   54 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCCCH
Confidence            46666899999999999999999999 6 9999999998844

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.32  E-value=0.0014  Score=54.12  Aligned_cols=35  Identities=29%  Similarity=0.473  Sum_probs=32.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |.|++...|+|||++++.|++.|.+ +|.||..+-.
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~-~G~~V~~fK~   36 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSR-RKLRVQPFKV   36 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH-CCCceeEEcc
Confidence            6788999999999999999999999 9999998864

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.31  E-value=0.00086  Score=53.45  Aligned_cols=42  Identities=26%  Similarity=0.193  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH---h--CCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS---K--CQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~---~--~g~rVlliD~D~~   72 (168)
                      ...|.-+.+.+|+|||++|.++|...+.   .  .+.+|++||+.-.
T Consensus       125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t  171 (344)
T PLN03187        125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT  171 (344)
T ss_pred             CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence            5667777899999999999999976652   0  2369999999863

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.30  E-value=0.001  Score=49.72  Aligned_cols=32  Identities=31%  Similarity=0.319  Sum_probs=25.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ...++.+++|+||||+|.+|+        .++++++.|..
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~   44 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMS   44 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcC--------CCCEEEecccc
Confidence            446667899999999877652        46899999974

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=97.30  E-value=0.0016  Score=50.39  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ...|.=+-+-.|+||||+|.+++..... .|.+|++||+...
T Consensus        59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~   99 (279)
T COG0468          59 RGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHA   99 (279)
T ss_pred             cceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCC
Confidence            4455555678899999999999999999 9999999999863

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.23  E-value=0.00059  Score=52.43  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      |+| ++.+|+||||++..++..|.+ .|.+|.+|+.|..+.
T Consensus         2 IgI-tG~SGSGKTTv~~~l~~~l~~-~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAV-TGSSGAGTTTVKRAFEHIFAR-EGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHHHh-cCCceEEEecccccc
Confidence            555 678899999999999999998 899999999998775

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.22  E-value=0.00051  Score=45.97  Aligned_cols=31  Identities=42%  Similarity=0.440  Sum_probs=23.4

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .++++.+|+||||+|..||..+    |..++-+|-
T Consensus         2 I~I~G~~gsGKST~a~~La~~~----~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERL----GFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH----TCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH----CCeEEEecc
Confidence            4557899999999999998866    555554443

...

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.22  E-value=0.00052  Score=49.79  Aligned_cols=41  Identities=29%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHh---------CCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASK---------CQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~---------~g~rVlliD~D~~~   73 (168)
                      -+.++.+.+|+||||++.++|.+++.-         .+.+||+|+++...
T Consensus        33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~   82 (193)
T PF13481_consen   33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE   82 (193)
T ss_dssp             SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence            367778899999999999999999861         35799999999864

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.20  E-value=0.0053  Score=45.32  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=33.1

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +++.++|+|+ +-.|+||||+..++...+..  +++|.++..|+.
T Consensus        19 ~~~~~~i~~~-G~~gsGKTTli~~l~~~~~~--~~~v~v~~~~~~   60 (207)
T TIGR00073        19 KHGLVVLNFM-SSPGSGKTTLIEKLIDNLKD--EVKIAVIEGDVI   60 (207)
T ss_pred             hcCcEEEEEE-CCCCCCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence            4456777774 56689999999999988754  679999998874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.17  E-value=0.00079  Score=48.33  Aligned_cols=38  Identities=32%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++.+-.|+||||++..|+..+.. .+..++++|.|.-
T Consensus         9 ~I~i~G~~GsGKst~a~~l~~~l~~-~~~~~~~~~~d~~   46 (176)
T PRK05541          9 VIWITGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDEL   46 (176)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEecHHH
Confidence            4455788999999999999999998 8889999988753

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.14  E-value=0.0016  Score=51.86  Aligned_cols=42  Identities=19%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH--h---CCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS--K---CQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~--~---~g~rVlliD~D~~   72 (168)
                      ...|..+.+.+|+|||++|..+|...+.  .   .+.+|++||++-.
T Consensus       122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~  168 (342)
T PLN03186        122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT  168 (342)
T ss_pred             CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence            4566667889999999999999976542  0   1348999999874

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.13  E-value=0.0013  Score=48.51  Aligned_cols=39  Identities=26%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..+|++ ++.+|+||||++..|+..+   .+.++.+++.|...
T Consensus         6 ~~iI~I-~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~   44 (209)
T PRK05480          6 PIIIGI-AGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYY   44 (209)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccc
Confidence            555665 7799999999999999987   45689999998754

>PRK06762 hypothetical protein; Provisional

Probab=97.12  E-value=0.00069  Score=48.10  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.++.+..|+||||+|..|+..+    +..+.+++.|...
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~~r   39 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVR   39 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEecHHHHH
Confidence            3455668999999999999999877    3358888877644

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.10  E-value=0.00089  Score=51.24  Aligned_cols=38  Identities=24%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..-+.+ .+++|+|||.+|+++|..+.+ .|.+|+++..-
T Consensus       105 ~~nl~l-~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~  142 (254)
T COG1484         105 GENLVL-LGPPGVGKTHLAIAIGNELLK-AGISVLFITAP  142 (254)
T ss_pred             CCcEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence            445555 688999999999999999998 99999999774

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.10  E-value=0.0013  Score=47.65  Aligned_cols=40  Identities=38%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+||||++..|+..+.. .|..++++|.|...
T Consensus        19 ~~i~i~G~~GsGKstla~~l~~~l~~-~~~~~~~l~~d~~r   58 (184)
T TIGR00455        19 VVIWLTGLSGSGKSTIANALEKKLES-KGYRVYVLDGDNVR   58 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECChHHH
Confidence            45555788899999999999999987 88889999998755

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.09  E-value=0.0021  Score=56.26  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=35.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..|..+.+..|+||||++..++...++ .|.+|++||+...-
T Consensus        60 GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~  100 (790)
T PRK09519         60 GRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHAL  100 (790)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccch
Confidence            456666789999999999999998888 99999999998644

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=97.09  E-value=0.001  Score=50.80  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~   73 (168)
                      .-+.++++.+|+|||+++.++|..++. . |.+|+++.++...
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~-~~~~~vly~SlEm~~   60 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAAL-NGGYPVLYFSLEMSE   60 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHH-TTSSEEEEEESSS-H
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHH-hcCCeEEEEcCCCCH
Confidence            346777899999999999999999999 6 6999999999744

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>PHA00729 NTP-binding motif containing protein

Probab=97.09  E-value=0.00069  Score=50.79  Aligned_cols=38  Identities=21%  Similarity=0.167  Sum_probs=29.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHH-------------HhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALA-------------SKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la-------------~~~g~rVlliD~D~   71 (168)
                      ..|. +.+.+|+||||+|..||..+.             . .+++++.+|.+.
T Consensus        18 ~nIl-ItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d-~~~~~~fid~~~   68 (226)
T PHA00729         18 VSAV-IFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ-YVQNSYFFELPD   68 (226)
T ss_pred             EEEE-EECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh-cCCcEEEEEHHH
Confidence            3444 456889999999999999875             3 567788888764

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=97.07  E-value=0.0052  Score=44.39  Aligned_cols=37  Identities=14%  Similarity=0.032  Sum_probs=29.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|-|+. ..|=||||.|..+|...+- .|+||++|=+=-
T Consensus        23 li~VYt-GdGKGKTTAAlGlalRAaG-~G~rV~iiQFlK   59 (178)
T PRK07414         23 LVQVFT-SSQRNFFTSVMAQALRIAG-QGTPVLIVQFLK   59 (178)
T ss_pred             EEEEEe-CCCCCchHHHHHHHHHHhc-CCCEEEEEEEec
Confidence            344433 4577999999999999999 999999997643

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.01  E-value=0.0017  Score=48.41  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++.+ .+.+|+|||+++.+++...++ .|++|++++++...
T Consensus        16 g~~~li-~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~   56 (224)
T TIGR03880        16 GHVIVV-IGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEERE   56 (224)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCH
Confidence            455555 567999999999999999888 89999999998743

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.01  E-value=0.00092  Score=48.40  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-+.+++ ..|+|||.+|..+|..+.+ .|++|+.+++.
T Consensus        47 ~~~l~l~G-~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~   84 (178)
T PF01695_consen   47 GENLILYG-PPGTGKTHLAVAIANEAIR-KGYSVLFITAS   84 (178)
T ss_dssp             --EEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEHH
T ss_pred             CeEEEEEh-hHhHHHHHHHHHHHHHhcc-CCcceeEeecC
Confidence            45566655 6899999999999999999 99999999875

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=96.99  E-value=0.0029  Score=53.06  Aligned_cols=42  Identities=17%  Similarity=0.105  Sum_probs=35.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPS   75 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~   75 (168)
                      .+.++.+.+|+|||+++.+++...++ . |.+|++|.++.....
T Consensus        32 s~~li~G~pGsGKT~l~~qf~~~~~~-~~ge~~lyis~ee~~~~   74 (509)
T PRK09302         32 RPTLVSGTAGTGKTLFALQFLVNGIK-RFDEPGVFVTFEESPED   74 (509)
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCEEEEEccCCHHH
Confidence            44455789999999999999998888 6 999999999985533

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=96.98  E-value=0.0013  Score=53.84  Aligned_cols=43  Identities=23%  Similarity=0.279  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|..++...|++|+++.++...
T Consensus       193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~  235 (421)
T TIGR03600       193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA  235 (421)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence            3446677999999999999999999983279999999998744

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.97  E-value=0.002  Score=48.15  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=33.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+|||+++.+++...++ .|.+|++++++...
T Consensus        21 ~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~   60 (229)
T TIGR03881        21 FFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESR   60 (229)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCH
Confidence            34444679999999999999998888 89999999997643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06526 transposase; Provisional

Probab=96.92  E-value=0.00064  Score=52.02  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +-+ ++.+.+|+|||++|.++|..+.+ .|++|+++.+.
T Consensus        99 ~nl-ll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~  135 (254)
T PRK06526         99 ENV-VFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAA  135 (254)
T ss_pred             ceE-EEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHH
Confidence            344 44668899999999999999999 99999987554

>PRK05439 pantothenate kinase; Provisional

Probab=96.92  E-value=0.0023  Score=50.36  Aligned_cols=42  Identities=36%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~   73 (168)
                      +-+|+| ++.+|+||||+|..|+..+.+. .+.+|.+|.+|-..
T Consensus        86 ~~iIgI-aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         86 PFIIGI-AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            445555 7889999999999999988762 26799999999755

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.91  E-value=0.001  Score=49.17  Aligned_cols=39  Identities=31%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++++-+|+||||+|-+||..|.+ .+.+|..+..|...
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy~~   41 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDYLR   41 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHH-hhhhccccchhhhh
Confidence            3455789999999999999999999 99999998887644

>PRK09354 recA recombinase A; Provisional

Probab=96.90  E-value=0.0021  Score=51.32  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=33.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|..+.+..|+||||+|.+++...++ .|.+|++||+...
T Consensus        60 G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s   99 (349)
T PRK09354         60 GRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHA   99 (349)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccc
Confidence            344444568999999999999999999 9999999999863

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.90  E-value=0.0051  Score=48.58  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=33.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++++-++++ .++||||++..+...+.+ .|..++.||.+..
T Consensus        53 G~ivEi~G~-~ssGKttLaL~~ia~~q~-~g~~~a~ID~e~~   92 (322)
T PF00154_consen   53 GRIVEIYGP-ESSGKTTLALHAIAEAQK-QGGICAFIDAEHA   92 (322)
T ss_dssp             TSEEEEEES-TTSSHHHHHHHHHHHHHH-TT-EEEEEESSS-
T ss_pred             CceEEEeCC-CCCchhhhHHHHHHhhhc-ccceeEEecCccc
Confidence            778888876 688999999999999888 8999999999753

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PTZ00035 Rad51 protein; Provisional

Probab=96.88  E-value=0.0032  Score=50.14  Aligned_cols=41  Identities=22%  Similarity=0.129  Sum_probs=31.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~   72 (168)
                      ..|..+.+..|+|||+++..++.....-     .+.+|++||+...
T Consensus       118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence            4555557799999999999998765410     3569999999754

>PRK12377 putative replication protein; Provisional

Probab=96.86  E-value=0.0018  Score=49.35  Aligned_cols=35  Identities=29%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .++++..|+|||.++..+|..+.+ .|++|+++...
T Consensus       104 l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~  138 (248)
T PRK12377        104 FVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP  138 (248)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH
Confidence            344678899999999999999999 99999999874

>PRK05595 replicative DNA helicase; Provisional

Probab=96.84  E-value=0.002  Score=53.14  Aligned_cols=43  Identities=21%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|..+|...|++|+++.++...
T Consensus       200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~  242 (444)
T PRK05595        200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK  242 (444)
T ss_pred             CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence            4457777999999999999999998774279999999998743

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.82  E-value=0.0087  Score=44.48  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      ...+.++=+.-|+|||.++..+++-+-. .|++|.+|-+...   ...++.-...-+..   .....-...+.++|....
T Consensus        27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T---~refi~qm~sl~yd---v~~~~l~G~l~~~~~~~~   99 (235)
T COG2874          27 VGSLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELT---VREFIKQMESLSYD---VSDFLLSGRLLFFPVNLE   99 (235)
T ss_pred             cCeEEEEECCCCccHHHHHHHHHHHHHh-CCceEEEEEechh---HHHHHHHHHhcCCC---chHHHhcceeEEEEeccc
Confidence            4567777888999999999999999999 9999999998652   12222111111110   001111233444543211


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~  150 (168)
                           ...+........++.+++..+..++|+||||+=..
T Consensus       100 -----~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~  134 (235)
T COG2874         100 -----PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSA  134 (235)
T ss_pred             -----ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccH
Confidence                 12222233455667777776657899999998664

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=96.81  E-value=0.003  Score=46.23  Aligned_cols=35  Identities=34%  Similarity=0.507  Sum_probs=31.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      |.|.|++...++|||+++..|+..|.+ +|.||-++
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~-~g~~v~~~   35 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRR-RGIKVGYF   35 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHh-CCCceEEE
Confidence            578999999999999999999999999 99999854

...

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.80  E-value=0.0093  Score=47.10  Aligned_cols=41  Identities=22%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHH--hCC---CeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALAS--KCQ---LKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~--~~g---~rVlliD~D~~   72 (168)
                      ..|..+.+.+|+|||+++..++...+.  ..|   .+|++||+...
T Consensus        96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~  141 (316)
T TIGR02239        96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT  141 (316)
T ss_pred             CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence            455556789999999999999874432  122   58999999864

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.77  E-value=0.007  Score=47.11  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+..+|.++ +..|+||||+...+...+..  .+++.+|+.|...
T Consensus       102 ~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~--~~~~~VI~gD~~t  143 (290)
T PRK10463        102 RKQLVLNLV-SSPGSGKTTLLTETLMRLKD--SVPCAVIEGDQQT  143 (290)
T ss_pred             cCCeEEEEE-CCCCCCHHHHHHHHHHHhcc--CCCEEEECCCcCc
Confidence            346666665 56899999999999999866  3689999998744

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.75  E-value=0.00067  Score=51.94  Aligned_cols=49  Identities=24%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCCCCCcccccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      ..|.=+.+.+|+|||.+|..||.....-     .+.+|++||++-.. +...+..
T Consensus        38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f-~~~Rl~~   91 (256)
T PF08423_consen   38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF-SPERLQQ   91 (256)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS--HHHHHH
T ss_pred             CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC-CHHHHHH
Confidence            3455557789999999999999765420     36799999999754 3344433

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.75  E-value=0.0021  Score=49.59  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+++|-+|+||||+|..|+..+.+ .+++|.+|+-|.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~~   39 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEE-KGKEVVIISDDS   39 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHH-TT--EEEE-THH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            3456889999999999999999999 999999999554

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK08506 replicative DNA helicase; Provisional

Probab=96.75  E-value=0.0029  Score=52.64  Aligned_cols=42  Identities=17%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|..++. .|++|+++.++...
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~  232 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPA  232 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCH
Confidence            4457777999999999999999999998 89999999999754

>PRK09183 transposase/IS protein; Provisional

Probab=96.71  E-value=0.0027  Score=48.73  Aligned_cols=37  Identities=30%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ...+.+ .+..|+|||+++..+|..+.. .|++|+++++
T Consensus       102 ~~~v~l-~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~  138 (259)
T PRK09183        102 NENIVL-LGPSGVGKTHLAIALGYEAVR-AGIKVRFTTA  138 (259)
T ss_pred             CCeEEE-EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeH
Confidence            344555 567899999999999999888 9999999875

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.70  E-value=0.002  Score=47.11  Aligned_cols=37  Identities=32%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCe----EEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLK----VGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r----VlliD~D~   71 (168)
                      +|++ ++.+|+||||+|..|+..|.+ .|..    +.++..|-
T Consensus         1 IIgI-~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~   41 (194)
T PF00485_consen    1 IIGI-AGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDD   41 (194)
T ss_dssp             EEEE-EESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGG
T ss_pred             CEEE-ECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecc
Confidence            3455 778899999999999999998 7766    66666664

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05642 DNA replication initiation factor; Validated

Probab=96.70  E-value=0.0022  Score=48.36  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=32.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      -.+..+..|+|||.++..++..+.+ .|++|++++++.
T Consensus        47 ~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~   83 (234)
T PRK05642         47 LIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE   83 (234)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH
Confidence            3466788999999999999999988 899999999865

>TIGR00665 DnaB replicative DNA helicase

Probab=96.70  E-value=0.0035  Score=51.48  Aligned_cols=43  Identities=19%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|..++...|++|+++.++...
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~  236 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA  236 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence            3456777999999999999999999886369999999999754

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.70  E-value=0.0035  Score=38.00  Aligned_cols=31  Identities=42%  Similarity=0.454  Sum_probs=25.7

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++.+..|+||||++..|+..+   .+.++.++|.
T Consensus         3 ~i~G~~gsGKst~~~~l~~~l---~~~~~~~i~~   33 (69)
T cd02019           3 AITGGSGSGKSTVAKKLAEQL---GGRSVVVLDE   33 (69)
T ss_pred             EEECCCCCCHHHHHHHHHHHh---cCCCEEEEeE
Confidence            346889999999999999988   3677887766

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain

Probab=96.68  E-value=0.016  Score=40.45  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             EEEEecCCCCCChhh-HHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---cCceeecccCCeeeeecC
Q 030973           33 VIAVASGKGGVGKST-TAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---DMKMVPIENYGVKCMSMG  108 (168)
Q Consensus        33 vI~v~s~kgG~GKTt-~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~  108 (168)
                      .+.+.--.+|.|||+ +--.+.....+ ++.|||++.  |.+.-...+-..-....+.-   ...-.......++++..+
T Consensus         5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~-~~~rvLvL~--PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a   81 (148)
T PF07652_consen    5 ELTVLDLHPGAGKTRRVLPEIVREAIK-RRLRVLVLA--PTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA   81 (148)
T ss_dssp             EEEEEE--TTSSTTTTHHHHHHHHHHH-TT--EEEEE--SSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH
T ss_pred             ceeEEecCCCCCCcccccHHHHHHHHH-ccCeEEEec--ccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH
Confidence            456667789999998 56777777777 799999985  32222221111111100000   000011112222333211


Q ss_pred             ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                                       .....+.+..+..+||+||+|=....+...+++-.
T Consensus        82 -----------------t~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg  116 (148)
T PF07652_consen   82 -----------------TYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARG  116 (148)
T ss_dssp             -----------------HHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHH
T ss_pred             -----------------HHHHHhcCcccccCccEEEEeccccCCHHHHhhhe
Confidence                             22233444444478999999988888777776543

The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....

>PRK08760 replicative DNA helicase; Provisional

Probab=96.67  E-value=0.003  Score=52.63  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|...+...|++|+++.++...
T Consensus       228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~  270 (476)
T PRK08760        228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA  270 (476)
T ss_pred             CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence            3457777999999999999999999885259999999998754

>PRK06749 replicative DNA helicase; Provisional

Probab=96.65  E-value=0.0029  Score=51.99  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=37.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|.|||+++.++|...++ .|++|+++.++...
T Consensus       185 ~G~LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~  226 (428)
T PRK06749        185 EGDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSS  226 (428)
T ss_pred             CCcEEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCH
Confidence            4457777999999999999999999998 89999999988754

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.64  E-value=0.0033  Score=46.93  Aligned_cols=37  Identities=22%  Similarity=0.185  Sum_probs=32.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..++.+..|+|||+++..++..+.+ .|.++..+++..
T Consensus        44 ~~~l~G~~G~GKT~La~ai~~~~~~-~~~~~~~i~~~~   80 (227)
T PRK08903         44 FFYLWGEAGSGRSHLLQALVADASY-GGRNARYLDAAS   80 (227)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEehHH
Confidence            4456788999999999999999988 899999999975

>PRK06893 DNA replication initiation factor; Validated

Probab=96.64  E-value=0.003  Score=47.47  Aligned_cols=37  Identities=14%  Similarity=-0.041  Sum_probs=32.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+..+..|+|||+++..+|..+.+ .+.+|.++.++.
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~~   77 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLSK   77 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHHH
Confidence            4556788999999999999999999 899999999863

>PRK08727 hypothetical protein; Validated

Probab=96.64  E-value=0.0028  Score=47.78  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=32.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++.+..|+|||.++..++..+.+ .|++|.++.++...
T Consensus        44 l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~~~   81 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQAAA   81 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHHhh
Confidence            556778999999999999999998 89999999876533

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.61  E-value=0.0041  Score=42.07  Aligned_cols=39  Identities=26%  Similarity=0.125  Sum_probs=33.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..++.+.+|+|||+++..++..+.. .+.+++.+++....
T Consensus        21 ~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~   59 (151)
T cd00009          21 NLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLL   59 (151)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhh
Confidence            4445788999999999999999988 89999999987654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.60  E-value=0.0024  Score=47.19  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH--------HHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL--------ASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l--------a~~~g~rVlliD~D   70 (168)
                      +.++.+.+|+|||++.+.+...+        .. .+++||++--.
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~-~~~~il~~~~s   62 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSAD-RGKKILVVSPS   62 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCC-CSS-EEEEESS
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhh-ccccceeecCC
Confidence            78889999999999999999888        45 78888888653

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=96.59  E-value=0.0046  Score=48.68  Aligned_cols=41  Identities=34%  Similarity=0.425  Sum_probs=36.3

Q ss_pred             CCeEEEEecCC-CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~k-gG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+||+|=|-. ||+|||.++..||..|.+ +|++|.+|.=.-
T Consensus        27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGY   68 (311)
T TIGR00682        27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKD-RGLRVGVLSRGY   68 (311)
T ss_pred             CCCEEEEeccccCCcChHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence            37899998877 999999999999999999 999999997543

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>COG2403 Predicted GTPase [General function prediction only]

Probab=96.57  E-value=0.0042  Score=49.65  Aligned_cols=40  Identities=33%  Similarity=0.334  Sum_probs=37.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ...++|+++...-|+|||+++..+|+.|.+ +|+||++|-.
T Consensus       124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~e-rgyrv~vVrh  163 (449)
T COG2403         124 LEKPVIAVTATRTGVGKSAVSRYVARLLRE-RGYRVCVVRH  163 (449)
T ss_pred             hcCceEEEEEeccccchhHHHHHHHHHHHH-cCCceEEEec
Confidence            347899999999999999999999999999 9999999977

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.57  E-value=0.0031  Score=50.02  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=32.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +-+.+ .+..|+|||.++..+|..+.. .|++|+.+.++-
T Consensus       184 ~~Lll-~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~  221 (329)
T PRK06835        184 ENLLF-YGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADE  221 (329)
T ss_pred             CcEEE-ECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHH
Confidence            44555 567899999999999999999 999999998854

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=96.56  E-value=0.023  Score=41.36  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=28.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .|.|+. ..|=||||.|..+|....- .|.||++|-+
T Consensus        30 li~V~T-G~GKGKTTAAlG~alRa~G-hG~rv~vvQF   64 (198)
T COG2109          30 LIIVFT-GNGKGKTTAALGLALRALG-HGLRVGVVQF   64 (198)
T ss_pred             eEEEEe-cCCCChhHHHHHHHHHHhc-CCCEEEEEEE
Confidence            344433 4577999999999999999 9999999865

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.56  E-value=0.0033  Score=46.74  Aligned_cols=40  Identities=18%  Similarity=0.100  Sum_probs=32.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.|.+ .+..|+|||+++..++..+.+ .+.+++.++++..
T Consensus        38 ~~~lll-~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~   77 (226)
T TIGR03420        38 DRFLYL-WGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAEL   77 (226)
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHH
Confidence            444555 568899999999999999988 8899999998654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=96.55  E-value=0.0042  Score=49.20  Aligned_cols=40  Identities=33%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++|+|=|- .||+|||+++..|+..|.+ +|+||.+|-=..
T Consensus        49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsRGY   89 (325)
T PRK00652         49 VPVIVVGNITVGGTGKTPVVIALAEQLQA-RGLKPGVVSRGY   89 (325)
T ss_pred             CCEEEEcCeeCCCCChHHHHHHHHHHHHH-CCCeEEEECCCC
Confidence            668888554 6999999999999999999 999999997554

>PRK08006 replicative DNA helicase; Provisional

Probab=96.55  E-value=0.0047  Score=51.37  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=36.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++.+.+|.|||+++.|+|..+|...|++|+++.++...
T Consensus       223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~  265 (471)
T PRK08006        223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG  265 (471)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence            4567777999999999999999999985269999999998754

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.54  E-value=0.0041  Score=48.78  Aligned_cols=41  Identities=24%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~   72 (168)
                      ..|..+.+.+|+|||++|.++|...+..     .+.+|++||++..
T Consensus        95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~  140 (310)
T TIGR02236        95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT  140 (310)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence            4566667899999999999999887520     1349999999864

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK05748 replicative DNA helicase; Provisional

Probab=96.54  E-value=0.0049  Score=50.92  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ..-+.++++.+|+|||+++.++|...+...|++|+++.++....
T Consensus       202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~  245 (448)
T PRK05748        202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE  245 (448)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence            34566779999999999999999998852699999999988553

>PTZ00301 uridine kinase; Provisional

Probab=96.53  E-value=0.0076  Score=44.80  Aligned_cols=43  Identities=33%  Similarity=0.604  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~~   74 (168)
                      ..+|++ ++.+|+||||+|..|+..+....| ..|+++-.|....
T Consensus         3 ~~iIgI-aG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          3 CTVIGI-SGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CEEEEE-ECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            456666 788899999999999988854134 3466888876553

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.53  E-value=0.006  Score=44.32  Aligned_cols=36  Identities=28%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++-+-.|+||||++..|+..+.. .|++|+.+...
T Consensus         5 ~IvieG~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~~   40 (195)
T TIGR00041         5 FIVIEGIDGAGKTTQANLLKKLLQE-NGYDVLFTREP   40 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence            3444778899999999999999999 99999877543

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.52  E-value=0.004  Score=48.98  Aligned_cols=38  Identities=29%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-+.+ .+..|+|||.++..+|..+++ .|++|.++.+.
T Consensus       156 ~~gl~L-~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~  193 (306)
T PRK08939        156 VKGLYL-YGDFGVGKSYLLAAIANELAK-KGVSSTLLHFP  193 (306)
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHH
Confidence            344555 567899999999999999999 99999999774

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.52  E-value=0.003  Score=51.41  Aligned_cols=38  Identities=29%  Similarity=0.376  Sum_probs=32.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|.+.+..+|+||||++..|.++|.+ +|.+|=-.-.-|
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~VqpfKvGP   39 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPFKVGP   39 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHh-cCCcccccccCC
Confidence            47788999999999999999999999 998886554433

>PRK06904 replicative DNA helicase; Validated

Probab=96.51  E-value=0.0054  Score=51.04  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.|+|...|...|++|+++.++...
T Consensus       220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~  262 (472)
T PRK06904        220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA  262 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence            4457777999999999999999999886359999999998754

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.50  E-value=0.0041  Score=46.96  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=33.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+..+..|+|||+++..++..+.+ .|++|.++.++..
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~   84 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKR   84 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHH
Confidence            4456788899999999999999998 8999999999863

>PF12846 AAA_10: AAA-like domain

Probab=96.50  E-value=0.0043  Score=47.69  Aligned_cols=35  Identities=31%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.++.|+||||++.++...+.. .|.+++++|...
T Consensus         5 ~i~G~tGsGKT~~~~~l~~~~~~-~g~~~~i~D~~g   39 (304)
T PF12846_consen    5 LILGKTGSGKTTLLKNLLEQLIR-RGPRVVIFDPKG   39 (304)
T ss_pred             EEECCCCCcHHHHHHHHHHHHHH-cCCCEEEEcCCc
Confidence            44689999999999999999999 999999997753

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.49  E-value=0.0081  Score=48.37  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++|.|++ ..|+||||++..|...|.+ .|+||.+|-.|...
T Consensus       204 ~~~~~~~~g-~~~~GKtt~~~~l~~~l~~-~g~~v~~iKh~~h~  245 (366)
T PRK14489        204 APPLLGVVG-YSGTGKTTLLEKLIPELIA-RGYRIGLIKHSHHR  245 (366)
T ss_pred             CccEEEEec-CCCCCHHHHHHHHHHHHHH-cCCEEEEEEECCcc
Confidence            477888865 6899999999999999999 99999999977643

>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2

Probab=96.48  E-value=0.0065  Score=43.74  Aligned_cols=36  Identities=33%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.++.+ .|=||||.|..+|...+- .|+||+++=+=-
T Consensus         6 i~vytG-~GKGKTTAAlGlalRA~G-~G~rV~ivQFlK   41 (172)
T PF02572_consen    6 IQVYTG-DGKGKTTAALGLALRAAG-HGMRVLIVQFLK   41 (172)
T ss_dssp             EEEEES-SSS-HHHHHHHHHHHHHC-TT--EEEEESS-
T ss_pred             EEEEeC-CCCCchHHHHHHHHHHHh-CCCEEEEEEEec
Confidence            444443 466999999999999999 999999997743

5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.46  E-value=0.0063  Score=43.97  Aligned_cols=35  Identities=31%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .++-+..|+||||++..|+..+.. .|.+|+.+...
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v~~~~~~   37 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEA-RGYEVVLTREP   37 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence            344678899999999999999988 99999877653

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK08840 replicative DNA helicase; Provisional

Probab=96.46  E-value=0.0053  Score=50.98  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=36.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.|+|...|...|++|+++.++...
T Consensus       216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~  258 (464)
T PRK08840        216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA  258 (464)
T ss_pred             CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence            4556777999999999999999999985369999999998754

>PRK08181 transposase; Validated

Probab=96.46  E-value=0.0037  Score=48.23  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .++.+..|+|||.++..+|..+.+ .|++|+.+.+.
T Consensus       109 lll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~  143 (269)
T PRK08181        109 LLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTT  143 (269)
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeHH
Confidence            445678899999999999999999 99999999863

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=96.45  E-value=0.0062  Score=50.99  Aligned_cols=71  Identities=24%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             CCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeee
Q 030973           30 VKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKC  104 (168)
Q Consensus        30 ~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (168)
                      .+|.|.|++-   .-|+||||++..|+..|.+ .|+++++-   .+.||+.=.||+.....-.-...+.|.+.-|+++
T Consensus        62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHf  135 (587)
T PRK13507         62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGK-RGKKVSGA---IRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGL  135 (587)
T ss_pred             CCeEEEEeccCCCCCCCCccchhhhHHHHHHh-hcCceEEE---EecCCcCCcCCcccccCCCccccccchhhccccc
Confidence            4788887764   5699999999999999999 99998875   4567777778887655444344455544444443

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.41  E-value=0.023  Score=40.90  Aligned_cols=38  Identities=18%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |.++++-=|+||||+..+|.. ... .|.|+.+|-.|...
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~-~~~~~~vI~ne~g~   39 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNR-QGERVAVIVNEFGE   39 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHT-TTS-EEEEECSTTS
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-Hhc-CCceeEEEEccccc
Confidence            445567779999999999998 555 89999999988765

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=96.39  E-value=0.0025  Score=52.02  Aligned_cols=70  Identities=23%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             CCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCe
Q 030973           29 GVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV  102 (168)
Q Consensus        29 ~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (168)
                      +.+|.|.|++-   .-|+||||++..|+.+|.+ .|+++.+-   .+.||+.=.||+.....-.-...+.|.+.-|+
T Consensus        50 ~~gKlILVTaitPTPaGEGKsTttiGL~~al~~-lgK~~i~a---lRePSlGP~fGiKGGAaGGGyaqv~PmediNL  122 (554)
T COG2759          50 PDGKLILVTAITPTPAGEGKTTTTIGLVDALNK-LGKKAIIA---LREPSLGPVFGIKGGAAGGGYAQVLPMEDINL  122 (554)
T ss_pred             CCceEEEEEecCCCCCCCCcceeeehHHHHHHh-cCchheEE---eccCCcCCccccccccCCCceeeeeehhhccc
Confidence            35788887764   4599999999999999999 99998764   45677777888776543333333444443333

>PLN02200 adenylate kinase family protein

Probab=96.39  E-value=0.0052  Score=46.42  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             CCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           21 GSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        21 ~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ...++.++.+.+.+.++.+.+|+||||+|..||..+
T Consensus        32 ~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         32 EERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             ccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            344444455555777888999999999999998765

>PRK08116 hypothetical protein; Validated

Probab=96.38  E-value=0.0059  Score=47.07  Aligned_cols=36  Identities=22%  Similarity=0.151  Sum_probs=31.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      -.++.+..|+|||.++..+|..+.+ .|++|+++++.
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~  151 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFP  151 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence            3455678899999999999999999 89999999864

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.38  E-value=0.0076  Score=45.24  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=32.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE-EeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll-iD~D~~~   73 (168)
                      ..+|++ ++..|+||||++..|+..+.. .+..+.+ |.+|...
T Consensus        33 ~~iigi-~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~~~   74 (229)
T PRK09270         33 RTIVGI-AGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDGFH   74 (229)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHhhh-ccCCceEEEeccccc
Confidence            445555 689999999999999999988 6666655 7777644

>PRK06321 replicative DNA helicase; Provisional

Probab=96.36  E-value=0.0066  Score=50.52  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|..+|...|++|+++.++...
T Consensus       225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~  267 (472)
T PRK06321        225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV  267 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence            3457777999999999999999999985369999999998854

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=96.36  E-value=0.0038  Score=52.23  Aligned_cols=75  Identities=23%  Similarity=0.179  Sum_probs=44.6

Q ss_pred             eecCceeeccccCCccc-ccCCCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      |-|..-+..+.+...+. +....+|.|.|++-   .-|+||||++..|+..|++ .|+++.+-   .+.||+.=.||+..
T Consensus        31 ~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~-lg~~~~~~---lRePSlGP~fG~KG  106 (557)
T PF01268_consen   31 EPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNR-LGKKAIAA---LREPSLGPVFGIKG  106 (557)
T ss_dssp             EEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHHHHHH-TT--EEEE---E----CHHHHCST-
T ss_pred             HhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHh-cCCceEEE---EecCCCCCccCccc
Confidence            44555555554442211 12345888888764   5699999999999999999 99998875   46678888899886


Q ss_pred             CCC
Q 030973           85 KPE   87 (168)
Q Consensus        85 ~~~   87 (168)
                      ...
T Consensus       107 GAa  109 (557)
T PF01268_consen  107 GAA  109 (557)
T ss_dssp             STT
T ss_pred             ccc
Confidence            543

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.35  E-value=0.0056  Score=44.73  Aligned_cols=36  Identities=33%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |++ ++..|+||||++..|+..+   .+.++.++.+|...
T Consensus         2 igi-~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~D~~~   37 (198)
T cd02023           2 IGI-AGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYY   37 (198)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHh---CCCCeEEEEecccc
Confidence            444 6779999999999999887   35688899988644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF05729 NACHT: NACHT domain

Probab=96.33  E-value=0.0052  Score=42.93  Aligned_cols=27  Identities=41%  Similarity=0.412  Sum_probs=23.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ   61 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g   61 (168)
                      +.++.+.+|+||||++..++..++. .+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~-~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAE-EE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHh-cC
Confidence            4667899999999999999999998 54

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.32  E-value=0.006  Score=48.81  Aligned_cols=39  Identities=31%  Similarity=0.360  Sum_probs=33.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH--HHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL--ASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l--a~~~g~rVlliD~D~   71 (168)
                      |.+.++.+.+|+|||.++.+++..+  .. .+.+++++-.+.
T Consensus         1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~   41 (352)
T PF09848_consen    1 KQVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNH   41 (352)
T ss_pred             CeEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecc
Confidence            4578889999999999999999999  77 788888777765

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.31  E-value=0.0037  Score=44.42  Aligned_cols=24  Identities=42%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..+|+++|+||||+|..||..+..
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl   26 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGL   26 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCC
Confidence            445999999999999999987754

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.30  E-value=0.0069  Score=47.76  Aligned_cols=40  Identities=25%  Similarity=0.213  Sum_probs=32.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~   72 (168)
                      ..+..+.+.+|+|||++|.++|...+. .      +.+|++||++..
T Consensus       102 g~vtei~G~~GsGKT~l~~~~~~~~~~-~~~~gg~~~~~~yi~te~~  147 (317)
T PRK04301        102 QSITEFYGEFGSGKTQICHQLAVNVQL-PEEKGGLEGKAVYIDTEGT  147 (317)
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHhcc-ccccCCCCceEEEEeCCCC
Confidence            455666789999999999999988764 3      359999999864

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.30  E-value=0.0039  Score=42.08  Aligned_cols=42  Identities=29%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC-----CCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-----g~rVlliD~D~~~   73 (168)
                      .+.+.++.+..|+|||+++.+++..+.. .     +.+|+.+++....
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   49 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNA-EAEIKNHPDVIYVNCPSSR   49 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHH-HHHHCCCEEEEEEEHHHHS
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHH-hhhccCCCcEEEEEeCCCC
Confidence            3456667889999999999999999876 4     6788888876644

>PRK09165 replicative DNA helicase; Provisional

Probab=96.27  E-value=0.0084  Score=50.23  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh--------------CCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK--------------CQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~--------------~g~rVlliD~D~~~~   74 (168)
                      ..-+.++++.+|+|||+++.++|...|..              .|++|+++.++....
T Consensus       216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~  273 (497)
T PRK09165        216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE  273 (497)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence            34567779999999999999999999862              278999999988553

>PRK07004 replicative DNA helicase; Provisional

Probab=96.26  E-value=0.0088  Score=49.65  Aligned_cols=43  Identities=19%  Similarity=0.390  Sum_probs=36.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|...|...|++|+++.++...
T Consensus       212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~  254 (460)
T PRK07004        212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG  254 (460)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence            3456677999999999999999999885369999999998855

>PRK06921 hypothetical protein; Provisional

Probab=96.25  E-value=0.0072  Score=46.57  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~   69 (168)
                      ...+.+ .+..|+|||.++..+|..+.+ . |++|+.+.+
T Consensus       117 ~~~l~l-~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIAL-LGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF  154 (266)
T ss_pred             CCeEEE-ECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH
Confidence            344555 568899999999999999998 7 999999986

>PRK06851 hypothetical protein; Provisional

Probab=96.24  E-value=0.016  Score=46.65  Aligned_cols=49  Identities=22%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM   79 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~   79 (168)
                      ..+.+.++.+.+|+||||+...++..+.+ +|.+|.+.-|-....++..+
T Consensus       212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPdslD~v  260 (367)
T PRK06851        212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDSLDMV  260 (367)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCcceE
Confidence            35666777899999999999999999999 99999999886655444433

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.22  E-value=0.0081  Score=44.07  Aligned_cols=37  Identities=32%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+.++.+.+|+||||+...+...+.. .|++|+++-.-
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~apT   55 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEA-AGKRVIGLAPT   55 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHH-TT--EEEEESS
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHh-CCCeEEEECCc
Confidence            35555778999999999999999999 89999998654

>PF13173 AAA_14: AAA domain

Probab=96.22  E-value=0.0078  Score=40.92  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +++++ .+..|+||||++.+++..+-  ...+++.+|+|-..
T Consensus         3 ~~~~l-~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    3 KIIIL-TGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPR   41 (128)
T ss_pred             CeEEE-ECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHH
Confidence            44444 56779999999999998876  36789999998644

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.22  E-value=0.0077  Score=45.07  Aligned_cols=39  Identities=36%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~   73 (168)
                      |++ ++..|+||||+|..|+..+... .+.+|.+|.+|-..
T Consensus         2 igI-~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGI-AGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEe-eCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            445 6889999999999999988641 35689999888754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.22  E-value=0.011  Score=46.10  Aligned_cols=43  Identities=35%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~~   74 (168)
                      +-+|++ .+..|+||||++..|...+.+. .+.+|.++.+|-...
T Consensus        62 p~IIGI-aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        62 PYIISI-AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            445555 7888999999999998888741 245899999997553

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06761 hypothetical protein; Provisional

Probab=96.21  E-value=0.0082  Score=46.60  Aligned_cols=40  Identities=33%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE-EeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll-iD~D~~~   73 (168)
                      .+.++.+.+|+||||++..|+..+.. .|.+|-. .+.|...
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~~~   44 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNLDH   44 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCCCC
Confidence            35566778999999999999999988 8888875 5666534

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.20  E-value=0.0079  Score=51.84  Aligned_cols=45  Identities=27%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~   77 (168)
                      ..+.++.+.+|+||||+|..|+..|.. .|..+.++|.|..+..+.
T Consensus       460 ~~~i~~~G~~gsGKst~a~~l~~~l~~-~~~~~~~l~~D~~r~~l~  504 (632)
T PRK05506        460 PATVWFTGLSGSGKSTIANLVERRLHA-LGRHTYLLDGDNVRHGLN  504 (632)
T ss_pred             cEEEEecCCCCchHHHHHHHHHHHHHH-cCCCEEEEcChhhhhccC
Confidence            445556889999999999999999998 899999999998765543

>COG4240 Predicted kinase [General function prediction only]

Probab=96.11  E-value=0.012  Score=44.25  Aligned_cols=40  Identities=30%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~   71 (168)
                      .+.|..+|+.-|+||||+++.+-..|++ +| .||+-..+|-
T Consensus        49 rPli~gisGpQGSGKStls~~i~~~L~~-kg~ert~~lSLDD   89 (300)
T COG4240          49 RPLIVGISGPQGSGKSTLSALIVRLLAA-KGLERTATLSLDD   89 (300)
T ss_pred             CceEEEeecCCCCchhhHHHHHHHHHHH-hcccceEEeehhh
Confidence            4667777889999999999999999999 77 7999999886

>PRK07933 thymidylate kinase; Validated

Probab=96.11  E-value=0.013  Score=43.67  Aligned_cols=35  Identities=29%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .++-+--|+||||.+..|+.+|.. .|.+|.++...
T Consensus         3 IviEG~dGsGKST~~~~L~~~L~~-~g~~v~~~~~P   37 (213)
T PRK07933          3 IAIEGVDGAGKRTLTEALRAALEA-RGRSVATLAFP   37 (213)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            344677899999999999999999 99999998764

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.10  E-value=0.011  Score=50.24  Aligned_cols=44  Identities=36%  Similarity=0.335  Sum_probs=35.3

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.+| ++.+..|+||||++..||..|....|.++.++|.|...
T Consensus       390 ~~g~~I-vl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr  433 (568)
T PRK05537        390 KQGFTV-FFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR  433 (568)
T ss_pred             CCCeEE-EEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence            335555 44689999999999999999975357789999999754

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.10  E-value=0.005  Score=42.82  Aligned_cols=34  Identities=38%  Similarity=0.477  Sum_probs=26.4

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .++.+..|+||||+|..|+..+    +  ..++|.|....
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~~   35 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHP   35 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc----C--CEEEeCccccc
Confidence            4667999999999999988764    2  25678888664

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.10  E-value=0.012  Score=48.24  Aligned_cols=40  Identities=23%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.|.-+++..|+||||++..|...+.. .|.+|..|..|-.
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~~-~g~~vgvISiDDf  251 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFRV-TGRKSATLSIDDF  251 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcc-cCCceEEEEECCc
Confidence            344445788899999999999888877 7888888877753

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.07  E-value=0.0068  Score=44.46  Aligned_cols=44  Identities=27%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ...+++.++.+.+|+||||++..+...+.   +...+.||.|.....
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~   55 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQF   55 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGG
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHh
Confidence            34778888899999999999988866553   567899999986533

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PLN02759 Formate--tetrahydrofolate ligase

Probab=96.05  E-value=0.018  Score=48.72  Aligned_cols=92  Identities=22%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             eecCceeeccccCCccc-ccCCCCeEEEEec---CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s---~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      |.|...+..+.+...+. .....+|.|.|++   ..-|+||||++..|+..|.+-.|+++++-   .+.||+.=.||+..
T Consensus        46 e~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKG  122 (637)
T PLN02759         46 DLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIKG  122 (637)
T ss_pred             ccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCccc
Confidence            44444554444433221 1223467777765   45699999999999999994279998875   45677777788876


Q ss_pred             CCCccccCceeecccCCee
Q 030973           85 KPEVTKDMKMVPIENYGVK  103 (168)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~  103 (168)
                      ...-.-...+.+.+.-|++
T Consensus       123 GAaGGGysQv~Pme~iNLH  141 (637)
T PLN02759        123 GAAGGGYSQVIPMEEFNLH  141 (637)
T ss_pred             ccCCCcccccccHhhhccc
Confidence            5443333444444444443

>PRK08118 topology modulation protein; Reviewed

Probab=96.01  E-value=0.0078  Score=43.06  Aligned_cols=25  Identities=44%  Similarity=0.549  Sum_probs=19.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.|.| .+.+|+||||+|..|+..+.
T Consensus         2 ~rI~I-~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIIL-IGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence            34555 46889999999998887653

>PRK05636 replicative DNA helicase; Provisional

Probab=96.01  E-value=0.012  Score=49.35  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=36.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.++++.+|+|||+++.++|...+...|++|+++.++...
T Consensus       264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~  306 (505)
T PRK05636        264 GGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK  306 (505)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence            4556677999999999999999998885268999999888754

>PLN02796 D-glycerate 3-kinase

Probab=96.01  E-value=0.011  Score=47.04  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=30.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|.-+++..|+||||++..|...+.. .|.++..|-.|-
T Consensus       100 pliIGI~G~sGSGKSTLa~~L~~lL~~-~g~~~g~IsiDd  138 (347)
T PLN02796        100 PLVIGISAPQGCGKTTLVFALVYLFNA-TGRRAASLSIDD  138 (347)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHhcc-cCCceeEEEECC
Confidence            344444688999999999999999987 777887776654

>PRK06217 hypothetical protein; Validated

Probab=96.00  E-value=0.0079  Score=43.49  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=23.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.+ .+.+|+||||++..|+..+    |.+  .+|+|.
T Consensus         4 I~i-~G~~GsGKSTla~~L~~~l----~~~--~~~~D~   34 (183)
T PRK06217          4 IHI-TGASGSGTTTLGAALAERL----DIP--HLDTDD   34 (183)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHc----CCc--EEEcCc
Confidence            444 6789999999999999765    433  577774

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.97  E-value=0.013  Score=49.10  Aligned_cols=40  Identities=28%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++.+ .+..|+|||+++.+++...++ .|.+|++|.++..
T Consensus       273 g~~~li-~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~  312 (509)
T PRK09302        273 GSIILV-SGATGTGKTLLASKFAEAACR-RGERCLLFAFEES  312 (509)
T ss_pred             CcEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence            445555 689999999999999999999 9999999999864

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=95.96  E-value=0.012  Score=48.45  Aligned_cols=40  Identities=20%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |+.|.|++...|+||||+++.|+..|.+ +|.+|-.+=..+
T Consensus         1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~-~g~~v~~~K~Gp   40 (433)
T PRK13896          1 MKGFVLGGTSSGVGKTVATLATIRALED-AGYAVQPAKAGP   40 (433)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEEeeCC
Confidence            3468999999999999999999999999 999987665543

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.87  E-value=0.008  Score=42.55  Aligned_cols=32  Identities=38%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..++.+.+|+||||++..||..+.    .  .++|.|.
T Consensus         6 ~i~l~G~~GsGKstla~~La~~l~----~--~~~d~d~   37 (175)
T PRK00131          6 NIVLIGFMGAGKSTIGRLLAKRLG----Y--DFIDTDH   37 (175)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC----C--CEEEChH
Confidence            445578999999999999998773    2  4456664

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.87  E-value=0.089  Score=41.64  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++..+ ++-=|+||||+.-++...  . .|+|+.+|--|...-+
T Consensus         4 ipv~il-tGFLGaGKTTll~~ll~~--~-~~~riaVi~NEfG~v~   44 (318)
T PRK11537          4 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGEVS   44 (318)
T ss_pred             cCEEEE-EECCCCCHHHHHHHHHhc--c-cCCcccccccCcCCcc
Confidence            444444 666789999999998754  4 6899999988875433

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.83  E-value=0.0082  Score=40.16  Aligned_cols=21  Identities=48%  Similarity=0.466  Sum_probs=18.6

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++++..|+||||+|..|+..+
T Consensus         2 ~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    2 GISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEESTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999887

...

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=95.81  E-value=0.0088  Score=45.12  Aligned_cols=32  Identities=28%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |+|+   |+.||||+...||..+.. .|+||++--+
T Consensus         2 i~~v---G~gGKTtl~~~l~~~~~~-~g~~v~~TTT   33 (232)
T TIGR03172         2 IAFV---GAGGKTSTMFWLAAEYRK-EGYRVLVTTT   33 (232)
T ss_pred             EEEE---cCCcHHHHHHHHHHHHHH-CCCeEEEECC
Confidence            4554   458999999999999999 9999998544

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.80  E-value=0.021  Score=42.58  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .-+|++ ++.+|+||||+|..|...|..   .+|.+|-.|-..
T Consensus         8 ~iiIgI-aG~SgSGKTTva~~l~~~~~~---~~~~~I~~D~YY   46 (218)
T COG0572           8 VIIIGI-AGGSGSGKTTVAKELSEQLGV---EKVVVISLDDYY   46 (218)
T ss_pred             eEEEEE-eCCCCCCHHHHHHHHHHHhCc---CcceEeeccccc
Confidence            345555 788999999999999998854   489999988755

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.77  E-value=0.013  Score=42.19  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++|++. +.+|+||||++..|+..+
T Consensus         3 ~~ii~i~-G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIV-GGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            5667775 459999999999998655

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=95.75  E-value=0.039  Score=41.47  Aligned_cols=35  Identities=37%  Similarity=0.403  Sum_probs=28.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~   69 (168)
                      +.|+++-+-+||||.|..|..+|.+ +|.  .|.++|=
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~-~~~K~~v~ii~d   39 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKE-RGTKQSVRIIDD   39 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHh-hcccceEEEech
Confidence            3456889999999999999999999 884  4666653

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.74  E-value=0.028  Score=45.35  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+|.|+ +..|+||||++..|...|.. . .||.+|..+.
T Consensus         5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~-~-~~V~~ik~~~   42 (369)
T PRK14490          5 PFEIAFC-GYSGSGKTTLITALVRRLSE-R-FSVGYYKHGC   42 (369)
T ss_pred             CEEEEEE-eCCCCCHHHHHHHHHHHHhh-C-ceEEEEEeCC
Confidence            5567775 56799999999999999999 7 9999998644

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=95.73  E-value=0.018  Score=48.15  Aligned_cols=40  Identities=13%  Similarity=0.092  Sum_probs=32.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.++.+.+|+||||+|.+++..-++..|.++++|.++..
T Consensus        22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~   61 (484)
T TIGR02655        22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES   61 (484)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            4455578999999999999998866614999999999853

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.68  E-value=0.011  Score=43.09  Aligned_cols=32  Identities=28%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +++.+|+||||+|..|+..+.     .+.+|..|-..
T Consensus         4 i~G~sgsGKTtla~~l~~~~~-----~~~~i~~Ddf~   35 (187)
T cd02024           4 ISGVTNSGKTTLAKLLQRILP-----NCCVIHQDDFF   35 (187)
T ss_pred             EECCCCCCHHHHHHHHHHHcC-----CCeEEcccccc
Confidence            468999999999999988752     36677777543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.64  E-value=0.016  Score=41.61  Aligned_cols=28  Identities=32%  Similarity=0.375  Sum_probs=22.7

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKV   64 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rV   64 (168)
                      +.+++.|+||||+...+...+.. .|.+|
T Consensus         3 ~iTG~pG~GKTTll~k~i~~l~~-~~~~v   30 (168)
T PF03266_consen    3 FITGPPGVGKTTLLKKVIEELKK-KGLPV   30 (168)
T ss_dssp             EEES-TTSSHHHHHHHHHHHHHH-TCGGE
T ss_pred             EEECcCCCCHHHHHHHHHHHhhc-cCCcc
Confidence            56789999999999999999977 55554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR00235 udk uridine kinase

Probab=95.63  E-value=0.023  Score=41.86  Aligned_cols=38  Identities=29%  Similarity=0.501  Sum_probs=27.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|++ ++.+|+||||++..|+..+..   ..+.++..|..
T Consensus         6 g~vi~I-~G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~~   43 (207)
T TIGR00235         6 GIIIGI-GGGSGSGKTTVARKIYEQLGK---LEIVIISQDNY   43 (207)
T ss_pred             eEEEEE-ECCCCCCHHHHHHHHHHHhcc---cCCeEeccccc
Confidence            555555 778999999999999887643   35666666654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=95.62  E-value=0.017  Score=43.07  Aligned_cols=41  Identities=32%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~   73 (168)
                      .+-++|+ +.-|+|||+++..|...+. + .+.+++++|..-..
T Consensus        23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~-~~~~~ii~D~~GEY   64 (229)
T PF01935_consen   23 NRHIAIF-GTTGSGKSNTVKVLLEELLKK-KGAKVIIFDPHGEY   64 (229)
T ss_pred             cceEEEE-CCCCCCHHHHHHHHHHHHHhc-CCCCEEEEcCCCcc
Confidence            4567765 4668999999999999999 7 89999999987644

It contains several conserved aspartates and histidines that could be metal ligands.

>PLN02348 phosphoribulokinase

Probab=95.62  E-value=0.029  Score=45.51  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCC---------------CeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ---------------LKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g---------------~rVlliD~D~~~   73 (168)
                      .-+|+ +++.+|+||||+|..|+..|.. .+               ..|.+|-+|-.+
T Consensus        49 p~IIG-IaG~SGSGKSTfA~~L~~~Lg~-~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         49 TVVIG-LAADSGCGKSTFMRRLTSVFGG-AAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CEEEE-EECCCCCCHHHHHHHHHHHHhh-ccCCCccccccccccccCceEEEEccccc
Confidence            44455 4889999999999999999975 42               468888888654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.59  E-value=0.0091  Score=40.94  Aligned_cols=32  Identities=34%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.++.+.+|+||||++..|+..+    +  ..+|+.|.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~----~--~~~i~~D~   32 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL----G--AVVISQDE   32 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS----T--EEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC----C--CEEEeHHH
Confidence            45668899999999988886644    3  56788886

...

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.58  E-value=0.026  Score=40.53  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~   74 (168)
                      ++...++.+..|+|||.+|..||..+- . ...+.+.+|+.....
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~-~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVG-SERPLIRIDMSEYSE   45 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-S-SCCEEEEEEGGGHCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccC-CccchHHHhhhcccc
Confidence            344566678889999999999999998 6 778999999987553

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.57  E-value=0.027  Score=41.36  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=27.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++++..|+||||+...++..+....+.+++.++-.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~   39 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP   39 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence            3455788999999999999988876235566666543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06851 hypothetical protein; Provisional

Probab=95.56  E-value=0.044  Score=44.17  Aligned_cols=45  Identities=22%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      .+.+.+.++.+|+||||+...++..+.+ .|.+|-.+=+.....++
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~-~g~~Ve~~~~~~d~~sl   73 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLE-KGYDVEFLHCSSDNDSL   73 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEcCCCCCce
Confidence            5667778999999999999999999998 88887766444433333

>PLN02924 thymidylate kinase

Probab=95.55  E-value=0.03  Score=41.96  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +.+..|+| =+-.|+||||.+..|+..|.. .|.+|.++..
T Consensus        14 ~~g~~Ivi-EGiDGsGKsTq~~~L~~~l~~-~g~~v~~~~e   52 (220)
T PLN02924         14 SRGALIVL-EGLDRSGKSTQCAKLVSFLKG-LGVAAELWRF   52 (220)
T ss_pred             CCCeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCCceeeeC
Confidence            33555555 678899999999999999999 9999876643

>PRK07773 replicative DNA helicase; Validated

Probab=95.51  E-value=0.027  Score=50.52  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=36.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ..-+.++++.+|+|||++|.++|...|...|++|+++.++....
T Consensus       216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~  259 (886)
T PRK07773        216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE  259 (886)
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence            34566779999999999999999999863589999999987553

>PRK06547 hypothetical protein; Provisional

Probab=95.51  E-value=0.018  Score=41.43  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|+| .+..|+||||+|..|+..+    +  +.++++|-..
T Consensus        15 ~~~i~i-~G~~GsGKTt~a~~l~~~~----~--~~~~~~d~~~   50 (172)
T PRK06547         15 MITVLI-DGRSGSGKTTLAGALAART----G--FQLVHLDDLY   50 (172)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHh----C--CCeeccccee
Confidence            455555 6899999999998888763    3  3455666433

>PRK00698 tmk thymidylate kinase; Validated

Probab=95.49  E-value=0.033  Score=40.61  Aligned_cols=37  Identities=27%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++.|+| -+..|+||||++..|+..+.. .|..|.....
T Consensus         3 ~~~I~i-eG~~gsGKsT~~~~L~~~l~~-~~~~~~~~~~   39 (205)
T PRK00698          3 GMFITI-EGIDGAGKSTQIELLKELLEQ-QGRDVVFTRE   39 (205)
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCceeEeeC
Confidence            345555 688899999999999999988 8877776543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.48  E-value=0.028  Score=37.66  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +..+..|+|||+++..+|..+    +..++-+|+...
T Consensus         2 ll~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~   34 (132)
T PF00004_consen    2 LLHGPPGTGKTTLARALAQYL----GFPFIEIDGSEL   34 (132)
T ss_dssp             EEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHH
T ss_pred             EEECcCCCCeeHHHHHHHhhc----cccccccccccc
Confidence            346788999999999998876    567888887653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=95.45  E-value=0.27  Score=39.30  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~   77 (168)
                      .++ .++++-=|+||||+.-.+...  . .|+|+.+|--|...-++.
T Consensus         4 ipv-~iltGFLGaGKTTll~~ll~~--~-~~~~iavi~Ne~G~~~ID   46 (341)
T TIGR02475         4 IPV-TIVTGFLGAGKTTLIRHLLQN--A-AGRRIAVIVNEFGDLGID   46 (341)
T ss_pred             cCE-EEEEECCCCCHHHHHHHHHhc--c-CCCcEEEEECCCccccch
Confidence            444 444566789999999998764  3 689999999887654433

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.43  E-value=0.018  Score=42.42  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++++.+|+||||+|..||..+    |..+ ++..|.-.
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~----~~~~-~~~~D~~r   39 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHR----AIDI-VLSGDYLR   39 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc----CCeE-EehhHHHH
Confidence            466778999999999999888764    4333 67777533

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.40  E-value=0.021  Score=40.66  Aligned_cols=39  Identities=23%  Similarity=0.141  Sum_probs=28.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.++.+..|+|||++...+...+.+ .+.-++.++++..
T Consensus        25 ~~~ll~G~~G~GKT~ll~~~~~~~~~-~~~~~~~~~~~~~   63 (185)
T PF13191_consen   25 RNLLLTGESGSGKTSLLRALLDRLAE-RGGYVISINCDDS   63 (185)
T ss_dssp             --EEE-B-TTSSHHHHHHHHHHHHHH-HT--EEEEEEETT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEEEecc
Confidence            45555788999999999999999998 5544888888876

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.39  E-value=0.019  Score=37.78  Aligned_cols=23  Identities=43%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             EecCCCCCChhhHHHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ++.+.+|+|||++|..||..+.+
T Consensus         2 ~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    2 WIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            34677799999999999999987

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.35  E-value=0.016  Score=39.87  Aligned_cols=22  Identities=45%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++++..|+||||+|..||..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3568899999999999998766

>TIGR00376 DNA helicase, putative

Probab=95.33  E-value=0.028  Score=48.59  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      -+.++.+.+|+|||++++.+...+.+ .|++||+.-
T Consensus       174 ~~~lI~GpPGTGKT~t~~~ii~~~~~-~g~~VLv~a  208 (637)
T TIGR00376       174 DLFLIHGPPGTGKTRTLVELIRQLVK-RGLRVLVTA  208 (637)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEc
Confidence            36677899999999999999999998 999999975

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.31  E-value=0.021  Score=47.19  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      -+.+ .+..|+|||+++..+|..+.+ .|.+|+.+.++.
T Consensus       143 pl~L-~G~~G~GKTHLl~Ai~~~l~~-~~~~v~yi~~~~  179 (445)
T PRK12422        143 PIYL-FGPEGSGKTHLMQAAVHALRE-SGGKILYVRSEL  179 (445)
T ss_pred             eEEE-EcCCCCCHHHHHHHHHHHHHH-cCCCEEEeeHHH
Confidence            3444 567899999999999999988 899999998753

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.29  E-value=0.017  Score=40.77  Aligned_cols=32  Identities=38%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ++.+..|+||||++..|+..+.      ..+||.|...
T Consensus         2 ~l~G~~GsGKSTla~~l~~~l~------~~~v~~D~~~   33 (163)
T TIGR01313         2 VLMGVAGSGKSTIASALAHRLG------AKFIEGDDLH   33 (163)
T ss_pred             EEECCCCCCHHHHHHHHHHhcC------CeEEeCcccc
Confidence            3468899999999999987762      3567888753

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=95.28  E-value=0.021  Score=43.56  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.|.+.++.+|+||||+|..+|..|.- .    -+|.+|.
T Consensus        88 ~p~IILIGGasGVGkStIA~ElA~rLgI-~----~visTD~  123 (299)
T COG2074          88 RPLIILIGGASGVGKSTIAGELARRLGI-R----SVISTDS  123 (299)
T ss_pred             CCeEEEecCCCCCChhHHHHHHHHHcCC-c----eeecchH
Confidence            4678888999999999999999998865 2    3566665

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.26  E-value=0.023  Score=46.31  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~   71 (168)
                      .++.+..|+|||+++..+|..+.+ .  +.+|+.+.++.
T Consensus       139 l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~~~  176 (405)
T TIGR00362       139 LFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSSEK  176 (405)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEHHH
Confidence            456789999999999999999987 6  78999998753

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK12338 hypothetical protein; Provisional

Probab=95.25  E-value=0.02  Score=45.25  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=27.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.++++.+|+||||+|..||..+.    .+ .+++.|..+
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~----~~-~~~~tD~~r   40 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLN----IK-HLIETDFIR   40 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCC----Ce-EEccChHHH
Confidence            35666789999999999999988763    33 366777644

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=95.21  E-value=0.077  Score=47.43  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC--CCCcccccccC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY--GPSVPMMMKID   83 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~--~~~l~~~~~~~   83 (168)
                      +.++.+..|+|||.+|..||..|-. .+.+++.+|+...  ..+...++|..
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~~l~g~~  648 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVSRLKGSP  648 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhccccCCC
Confidence            4455778899999999999999977 6778899997653  23455555543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=95.17  E-value=0.025  Score=45.05  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=34.9

Q ss_pred             CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+||+|=| .-||+|||-++..||..|.+ .|++|.+|.=.-.
T Consensus        56 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg   97 (338)
T PRK01906         56 VPVVVVGNVTVGGTGKTPTVIALVDALRA-AGFTPGVVSRGYG   97 (338)
T ss_pred             CCEEEECCccCCCCChHHHHHHHHHHHHH-cCCceEEEecCCC
Confidence            67887755 46999999999999999999 9999999985543

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.10  E-value=0.021  Score=44.42  Aligned_cols=36  Identities=31%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+.++.+.+|+||||+|..|+..+.     ....||.|..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~-----~~~~l~~D~~   37 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP-----KAVNVNRDDL   37 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC-----CCEEEeccHH
Confidence            45666789999999999999887651     4577787763

>PRK13973 thymidylate kinase; Provisional

Probab=95.10  E-value=0.055  Score=40.15  Aligned_cols=37  Identities=30%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++.|+| =+-.|+||||.+..|+..|.. .|++|+....
T Consensus         3 g~~Ivi-EG~dGsGKtTq~~~l~~~l~~-~g~~~~~~~~   39 (213)
T PRK13973          3 GRFITF-EGGEGAGKSTQIRLLAERLRA-AGYDVLVTRE   39 (213)
T ss_pred             ceEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEC
Confidence            344555 778899999999999999999 9999987743

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.09  E-value=0.029  Score=43.95  Aligned_cols=38  Identities=32%  Similarity=0.540  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.+.++++..|+||||+|..||..|.    .. .+|.+|.-+
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~----~~-~vi~~D~~r  128 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLG----IR-SVIGTDSIR  128 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC----CC-EEEechHHH
Confidence            446677899999999999999998773    33 356677654

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.06  E-value=0.032  Score=46.02  Aligned_cols=35  Identities=37%  Similarity=0.318  Sum_probs=28.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ..=|.+ ++.+|.||||+|.+||..++. .|+=|=-+
T Consensus       263 aeGILI-AG~PGaGKsTFaqAlAefy~~-~GkiVKTm  297 (604)
T COG1855         263 AEGILI-AGAPGAGKSTFAQALAEFYAS-QGKIVKTM  297 (604)
T ss_pred             hcceEE-ecCCCCChhHHHHHHHHHHHh-cCcEEeec
Confidence            444555 788999999999999999999 99844444

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.06  E-value=0.061  Score=41.48  Aligned_cols=43  Identities=33%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe--EEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r--VlliD~D~~~   73 (168)
                      +.+.|.-.++..|+||||+|..|+..+++ .+..  |-+|=+|-..
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFh  124 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFH  124 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccc
Confidence            35555556889999999999999999999 7665  8899998755

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=95.04  E-value=0.027  Score=44.69  Aligned_cols=42  Identities=26%  Similarity=0.297  Sum_probs=35.4

Q ss_pred             CCeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+||+|=| .-||+|||-++..|+..|.+ +|++|.+|.=...
T Consensus        34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~-~G~~~~IlSRGYg   76 (326)
T PF02606_consen   34 PVPVISVGNLTVGGTGKTPLVIWLARLLQA-RGYRPAILSRGYG   76 (326)
T ss_pred             CCcEEEEcccccCCCCchHHHHHHHHHHHh-cCCceEEEcCCCC
Confidence            367888865 46899999999999999999 9999999976543

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=95.03  E-value=0.032  Score=39.64  Aligned_cols=33  Identities=33%  Similarity=0.515  Sum_probs=24.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|.+ .+-.|+||||++..||..+.    .  .++|.|.
T Consensus         3 ~~i~~-~G~~GsGKst~~~~la~~lg----~--~~~d~D~   35 (171)
T PRK03731          3 QPLFL-VGARGCGKTTVGMALAQALG----Y--RFVDTDQ   35 (171)
T ss_pred             CeEEE-ECCCCCCHHHHHHHHHHHhC----C--CEEEccH
Confidence            44555 58899999999999987763    3  3578775

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=94.99  E-value=0.04  Score=43.22  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=28.6

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~   69 (168)
                      .++++..|+||||+...|...+.+ .  +.|++.|+-
T Consensus       135 ilI~G~tGSGKTTll~al~~~i~~-~~~~~ri~tiEd  170 (299)
T TIGR02782       135 ILVVGGTGSGKTTLANALLAEIAK-NDPTDRVVIIED  170 (299)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhc-cCCCceEEEECC
Confidence            456899999999999999988876 4  789988873

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=94.99  E-value=0.15  Score=39.99  Aligned_cols=105  Identities=13%  Similarity=0.233  Sum_probs=53.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC-CCcccccccCCCCC-ccccCceeecccCCeeeeecC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG-PSVPMMMKIDQKPE-VTKDMKMVPIENYGVKCMSMG  108 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~-~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  108 (168)
                      .++ .++.+-=|+||||+--.+.   ....|||+.+|--.+.- ..+...+-.....+ +.+  ......+.-+=|. . 
T Consensus        57 IPv-tIITGyLGaGKtTLLn~Il---~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyE--ewv~L~NGClCCt-V-  128 (391)
T KOG2743|consen   57 IPV-TIITGYLGAGKTTLLNYIL---TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYE--EWVELRNGCLCCT-V-  128 (391)
T ss_pred             cce-EEEEecccCChHHHHHHHH---ccCCCceEEEEhhhcccchhhhHHHHhccccchHHH--HHHHhcCCeEEEE-e-
Confidence            444 4445555899999966554   33389999998765533 22222222222111 000  0000000000000 0 


Q ss_pred             ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHH
Q 030973          109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT  157 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~  157 (168)
                                  ....-..++++.+ -+ .+||+|++.|-.-.+++.++
T Consensus       129 ------------k~~gvraie~lvq-kk-GkfD~IllETTGlAnPaPia  163 (391)
T KOG2743|consen  129 ------------KDNGVRAIENLVQ-KK-GKFDHILLETTGLANPAPIA  163 (391)
T ss_pred             ------------cchHHHHHHHHHh-cC-CCcceEEEeccCCCCcHHHH
Confidence                        0123457777777 33 89999999998766655543

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=94.98  E-value=0.046  Score=45.55  Aligned_cols=38  Identities=16%  Similarity=0.060  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .++++.|.+++...|+||||+++.|+.+|.+ +   |..+-.
T Consensus       235 ~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~-~---v~~fK~  272 (476)
T PRK06278        235 RNKPKGIILLATGSESGKTFLTTSIAGKLRG-K---VFVAKI  272 (476)
T ss_pred             hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHh-C---eEEEcC
Confidence            3457889999999999999999999999987 4   555543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.96  E-value=0.029  Score=40.22  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      |.++++.+|+||||+|..|+..+.
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            566789999999999999987753

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK04040 adenylate kinase; Provisional

Probab=94.94  E-value=0.031  Score=40.80  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +++|+ +.+.+|+||||++..|+..+.
T Consensus         2 ~~~i~-v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVV-VTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEE-EEeCCCCCHHHHHHHHHHHhc
Confidence            34444 477899999999999999884

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=94.91  E-value=0.035  Score=45.95  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~   71 (168)
                      .++.+..|+|||+++..+|..+.+ .  +.+|+.+.++.
T Consensus       151 l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~~  188 (450)
T PRK00149        151 LFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSEK  188 (450)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHHH
Confidence            456789999999999999999988 6  78999998864

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.90  E-value=0.039  Score=42.47  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+-+.++++..|+||||+...+...+.. .+++++.|+-
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iitiEd  116 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITVED  116 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEECC
Confidence            3446666889999999999999888876 6788888863

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=94.84  E-value=0.031  Score=40.30  Aligned_cols=33  Identities=30%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +-.|+||||.+..|+.+|.. .|.+ .++...+..
T Consensus         3 GiDGsGKtT~~~~L~~~l~~-~~~~-~~~~~~~~~   35 (186)
T PF02223_consen    3 GIDGSGKTTQIRLLAEALKE-KGYK-VIITFPPGS   35 (186)
T ss_dssp             ESTTSSHHHHHHHHHHHHHH-TTEE-EEEEESSTS
T ss_pred             CCCCCCHHHHHHHHHHHHHH-cCCc-ccccCCCCC
Confidence            34699999999999999999 9988 444544433

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.83  E-value=0.058  Score=36.88  Aligned_cols=40  Identities=25%  Similarity=0.220  Sum_probs=29.8

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      ..+..|+|||+++..+|..+    +.++..+.+.... ....+++
T Consensus         4 L~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~-~~~dl~g   43 (139)
T PF07728_consen    4 LVGPPGTGKTTLARELAALL----GRPVIRINCSSDT-TEEDLIG   43 (139)
T ss_dssp             EEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTS-THHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHh----hcceEEEEecccc-cccccee
Confidence            35788999999999999988    6788888887654 4444444

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=94.83  E-value=0.051  Score=41.69  Aligned_cols=32  Identities=31%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+..|+|||++|..+|.   . .|.+++.+.++..
T Consensus        26 L~G~~GtGKT~lA~~la~---~-lg~~~~~i~~~~~   57 (262)
T TIGR02640        26 LRGPAGTGKTTLAMHVAR---K-RDRPVMLINGDAE   57 (262)
T ss_pred             EEcCCCCCHHHHHHHHHH---H-hCCCEEEEeCCcc
Confidence            358889999999999987   3 5889999988764

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK13947 shikimate kinase; Provisional

Probab=94.82  E-value=0.033  Score=39.49  Aligned_cols=30  Identities=33%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+.+|+||||++..||..|    |.+  ++|.|.
T Consensus         5 ~l~G~~GsGKst~a~~La~~l----g~~--~id~d~   34 (171)
T PRK13947          5 VLIGFMGTGKTTVGKRVATTL----SFG--FIDTDK   34 (171)
T ss_pred             EEEcCCCCCHHHHHHHHHHHh----CCC--EEECch
Confidence            346789999999999998776    434  466665

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=94.82  E-value=0.082  Score=43.87  Aligned_cols=119  Identities=19%  Similarity=0.250  Sum_probs=68.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC----------------CCCccccCce-
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ----------------KPEVTKDMKM-   94 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~----------------~~~~~~~~~~-   94 (168)
                      +.|.+.+....+|||++++.|++.+++ +|.+|.=  +-.|+-++....-...                .+.......+ 
T Consensus         2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~P--FK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLL   78 (486)
T COG1492           2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVAP--FKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLL   78 (486)
T ss_pred             CccEEEeccCCcchhhhhhhhhHHHHh-cCCccCC--CchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEE
Confidence            357788888999999999999999999 9999852  2334444433322111                0111111111 


Q ss_pred             eecccCCeeeeecCccCCCCCCcc-cCc--hhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973           95 VPIENYGVKCMSMGFLVPSSSPVV-WRG--PMVMSALRKMSREVDWGNLDILVIDMPPGTGDA  154 (168)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~--~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~  154 (168)
                      .+....+..++-.|.......... +..  ......+.+.++.+. +.||+|++....+..+.
T Consensus        79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEi  140 (486)
T COG1492          79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEI  140 (486)
T ss_pred             eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhc
Confidence            122223445555544333333322 111  123456677777777 89999999987765444

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.82  E-value=0.025  Score=40.62  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.+.+|+||||+|..||..+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            4557889999999999998765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.75  E-value=0.043  Score=42.08  Aligned_cols=37  Identities=19%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +...++++..|+||||+...|...+-. ...+++.|+-
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~-~~~~iv~iEd  163 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPP-EDERIVTIED  163 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHT-TTSEEEEEES
T ss_pred             ceEEEEECCCccccchHHHHHhhhccc-cccceEEecc
Confidence            455556888999999999999988887 5689999984

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=94.74  E-value=0.075  Score=40.37  Aligned_cols=40  Identities=28%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++-+.+ |+.+|+||||.+..||+.|-. ..+|=-+++++.
T Consensus        47 nmP~lii-sGpPG~GKTTsi~~LAr~LLG-~~~ke~vLELNA   86 (333)
T KOG0991|consen   47 NMPNLII-SGPPGTGKTTSILCLARELLG-DSYKEAVLELNA   86 (333)
T ss_pred             CCCceEe-eCCCCCchhhHHHHHHHHHhC-hhhhhHhhhccC
Confidence            3555544 889999999999999999855 445545555543

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=94.70  E-value=0.048  Score=46.17  Aligned_cols=72  Identities=24%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             CCeEEEEec---CCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeee
Q 030973           30 VKDVIAVAS---GKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCM  105 (168)
Q Consensus        30 ~~~vI~v~s---~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  105 (168)
                      .+|.|.|++   ..-|+||||++..|+..|. + .|+++++-   .+.||+.=.||+.....-.-...+.|.+..|+++.
T Consensus        67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~-lgk~~~~~---lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfT  142 (625)
T PTZ00386         67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAH-LHRKTFAC---IRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGT  142 (625)
T ss_pred             CCcEEEEeecCCCCCCCCccchhhhhHHHHHHH-hCcceEEE---EecCCcCCcCCcccccCCCccccccchhhcccccc
Confidence            477777765   4569999999999999999 7 89998875   45567777788877654444445555555555443

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.70  E-value=0.041  Score=45.49  Aligned_cols=36  Identities=17%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~   71 (168)
                      .++.+..|+|||+++..+|..+.+ .  +.+|++++++.
T Consensus       133 l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~~~  170 (440)
T PRK14088        133 LFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK  170 (440)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHH
Confidence            455678899999999999999887 4  67999998753

>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]

Probab=94.69  E-value=0.07  Score=41.88  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      ++.++++++ .-.|||+++.-|..++-+ .++++|.+++||++|..
T Consensus        99 gp~v~vvGg-sq~Gkts~~~tL~syalk-~~~~pl~~nlDP~Qp~~  142 (424)
T COG5623          99 GPTVMVVGG-SQNGKTSFCFTLISYALK-LGKKPLFTNLDPSQPGN  142 (424)
T ss_pred             CCEEEEECC-CcCCceeHHHHHHHHHHH-hcCCceEEecCCCCccc
Confidence            667777654 458999999999999888 89999999999998653

>PRK07261 topology modulation protein; Provisional

Probab=94.67  E-value=0.033  Score=39.93  Aligned_cols=22  Identities=45%  Similarity=0.537  Sum_probs=17.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      |++ .+.+|+||||+|..|+..+
T Consensus         3 i~i-~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAI-IGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEE-EcCCCCCHHHHHHHHHHHh
Confidence            444 4689999999999987654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=94.66  E-value=0.32  Score=43.64  Aligned_cols=38  Identities=29%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..++.+..|+|||++|..||..+.. .+.+++.+|+...
T Consensus       597 ~~Lf~Gp~GvGKt~lA~~La~~l~~-~~~~~i~~d~s~~  634 (852)
T TIGR03346       597 SFLFLGPTGVGKTELAKALAEFLFD-DEDAMVRIDMSEY  634 (852)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhh
Confidence            3445688999999999999999988 8889999999764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK13948 shikimate kinase; Provisional

Probab=94.64  E-value=0.035  Score=40.37  Aligned_cols=33  Identities=36%  Similarity=0.460  Sum_probs=24.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|. ..+-.|+||||++..||..|.    .+  +||+|.
T Consensus        11 ~~I~-LiG~~GsGKSTvg~~La~~lg----~~--~iD~D~   43 (182)
T PRK13948         11 TWVA-LAGFMGTGKSRIGWELSRALM----LH--FIDTDR   43 (182)
T ss_pred             CEEE-EECCCCCCHHHHHHHHHHHcC----CC--EEECCH
Confidence            3444 467889999999988887763    33  469995

>PRK03839 putative kinase; Provisional

Probab=94.64  E-value=0.039  Score=39.62  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=18.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .++.+.+|+||||++..||..+.
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34458899999999988888763

>PRK07429 phosphoribulokinase; Provisional

Probab=94.59  E-value=0.059  Score=42.82  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=25.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .-+|++ .+..|+||||++..|+..+.. .+..|+..|
T Consensus         8 ~~IIgI-~G~SGSGKSTla~~L~~ll~~-~~~~vi~~D   43 (327)
T PRK07429          8 PVLLGV-AGDSGCGKTTFLRGLADLLGE-ELVTVICTD   43 (327)
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHhHhcc-CceEEEEec
Confidence            345555 688999999999999988765 433444443

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=94.59  E-value=0.056  Score=38.77  Aligned_cols=33  Identities=24%  Similarity=0.196  Sum_probs=26.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++.+..|+|||++|.+++..    .+.+++++....
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~   34 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAE   34 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccC
Confidence            466889999999999998754    467999997664

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=94.58  E-value=0.064  Score=40.63  Aligned_cols=37  Identities=30%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~   71 (168)
                      .+.-+.+|+||||+-..+|+.++.-    .++||.+||.-.
T Consensus       140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers  180 (308)
T COG3854         140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS  180 (308)
T ss_pred             eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence            3445789999999999999999973    479999999754

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=94.54  E-value=0.067  Score=42.12  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.++++..|+|||++|..||..+    +  +.+|.+|.
T Consensus         5 ~~i~i~GptgsGKt~la~~la~~~----~--~~iis~Ds   37 (307)
T PRK00091          5 KVIVIVGPTASGKTALAIELAKRL----N--GEIISADS   37 (307)
T ss_pred             eEEEEECCCCcCHHHHHHHHHHhC----C--CcEEeccc
Confidence            355667888999999999998765    2  35677775

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=94.52  E-value=0.081  Score=35.11  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=25.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEE
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK-CQLKVGLL   67 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlli   67 (168)
                      .++.+..|+|||+++..++..+... ..++++++
T Consensus         3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~   36 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVL   36 (144)
T ss_pred             EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence            3557888999999999999999862 23566666

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=94.48  E-value=0.052  Score=39.04  Aligned_cols=19  Identities=47%  Similarity=0.686  Sum_probs=16.2

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |++ .+.+|+||||+|-.|+
T Consensus         3 I~I-TGTPGvGKTT~~~~L~   21 (180)
T COG1936           3 IAI-TGTPGVGKTTVCKLLR   21 (180)
T ss_pred             EEE-eCCCCCchHHHHHHHH
Confidence            455 6789999999999888

>TIGR02746 TraC-F-type type-IV secretion system protein TraC

Probab=94.44  E-value=0.051  Score=48.09  Aligned_cols=41  Identities=27%  Similarity=0.161  Sum_probs=33.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      .++.+..|+|||+++..++..+.. .|.+|++||-.-....+
T Consensus       433 ~~I~G~tGsGKS~~~~~l~~~~~~-~g~~v~iiD~~~sy~~l  473 (797)
T TIGR02746       433 IAVVGGSGAGKSFFMQELIVDNLS-RGGKVWVIDVGRSYKKL  473 (797)
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHH
Confidence            344678899999999999988888 89999999987644333

The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.

>PRK13764 ATPase; Provisional

Probab=94.43  E-value=0.066  Score=45.86  Aligned_cols=36  Identities=33%  Similarity=0.324  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .+-| ++++..|+||||++.+|+..+.. .++.|+-++
T Consensus       257 ~~~I-LIsG~TGSGKTTll~AL~~~i~~-~~riV~TiE  292 (602)
T PRK13764        257 AEGI-LIAGAPGAGKSTFAQALAEFYAD-MGKIVKTME  292 (602)
T ss_pred             CCEE-EEECCCCCCHHHHHHHHHHHHhh-CCCEEEEEC
Confidence            3444 56889999999999999999988 888777776

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=94.41  E-value=0.088  Score=43.29  Aligned_cols=43  Identities=19%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..-+.+..+.+|.|||++|.|+|..+|...+++|.++.+....
T Consensus       195 ~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~  237 (435)
T COG0305         195 PGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSE  237 (435)
T ss_pred             cCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCH
Confidence            4446677999999999999999999998567779999888744

>PRK13975 thymidylate kinase; Provisional

Probab=94.28  E-value=0.058  Score=39.14  Aligned_cols=26  Identities=38%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.++-+-.|+||||++..||..+..
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34555788899999999999998853

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=94.23  E-value=0.042  Score=38.59  Aligned_cols=30  Identities=40%  Similarity=0.567  Sum_probs=25.2

Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      +-.|+||||++..||..|..      -.||.|--+|
T Consensus         2 GVsG~GKStvg~~lA~~lg~------~fidGDdlHp   31 (161)
T COG3265           2 GVSGSGKSTVGSALAERLGA------KFIDGDDLHP   31 (161)
T ss_pred             CCCccCHHHHHHHHHHHcCC------ceecccccCC
Confidence            45799999999999998865      5799998775

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.20  E-value=0.063  Score=38.86  Aligned_cols=19  Identities=53%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             cCCCCCChhhHHHHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~l   56 (168)
                      -+.+|+||||.|..||..+
T Consensus         6 lG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           6 LGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4788999999999998874

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=94.17  E-value=0.048  Score=41.85  Aligned_cols=43  Identities=30%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~~   73 (168)
                      ..++|++ .+-||+||||+|..++........ ..|+-|++....
T Consensus        18 ~~~~v~I-~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~   61 (287)
T PF00931_consen   18 EVRVVAI-VGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP   61 (287)
T ss_dssp             SSEEEEE-EESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred             CeEEEEE-EcCCcCCcceeeeeccccccccccccccccccccccc
Confidence            3566666 678899999999999987553122 356777776543

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK02496 adk adenylate kinase; Provisional

Probab=94.16  E-value=0.069  Score=38.47  Aligned_cols=23  Identities=43%  Similarity=0.481  Sum_probs=18.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .|.| .+.+|+||||+|..||..+
T Consensus         3 ~i~i-~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIF-LGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHHh
Confidence            3445 5679999999999998766

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=94.16  E-value=0.074  Score=41.36  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~   69 (168)
                      .++.+.+|+|||++|..+|..+.+ .|.    .++.+++
T Consensus        61 vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~   98 (284)
T TIGR02880        61 MSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR   98 (284)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH
Confidence            344578899999999999999987 664    4666664

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=94.15  E-value=0.061  Score=39.72  Aligned_cols=35  Identities=37%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|++| ++.|+||||++--+    ++ .|  +.+||+|-..
T Consensus         2 ~~iIglT-G~igsGKStva~~~----~~-~G--~~vidaD~v~   36 (201)
T COG0237           2 MLIIGLT-GGIGSGKSTVAKIL----AE-LG--FPVIDADDVA   36 (201)
T ss_pred             ceEEEEe-cCCCCCHHHHHHHH----HH-cC--CeEEEccHHH
Confidence            5678885 68899999987544    34 45  4567888744

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.11  E-value=0.049  Score=42.16  Aligned_cols=33  Identities=39%  Similarity=0.433  Sum_probs=24.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      |++ .+..|+||||++..|+..+.. .+..|+..|
T Consensus         2 igI-~G~sGsGKSTl~~~L~~ll~~-~~~~vi~~D   34 (273)
T cd02026           2 IGV-AGDSGCGKSTFLRRLTSLFGS-DLVTVICLD   34 (273)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHhhCC-CceEEEECc
Confidence            444 578999999999999988865 454444444

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family

Probab=94.09  E-value=0.06  Score=47.90  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=33.7

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      ++.+..|+|||+++..+...+.. .|.+|+++|.+-....+
T Consensus       442 ~I~G~sGsGKS~l~~~l~~~~~~-~g~~vviiD~g~sy~~l  481 (829)
T TIGR03783       442 FILGPSGSGKSFFTNHLVRQYYE-QGTHILLVDTGNSYQGL  481 (829)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh-cCCEEEEECCCccHHHH
Confidence            45688999999999999999988 99999999997544344

Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.

>PRK07413 hypothetical protein; Validated

Probab=94.08  E-value=0.35  Score=39.22  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=29.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCC------eEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQL------KVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~------rVlliD~D~   71 (168)
                      .|-|+. ..|=||||.|..+|...+- .|.      ||++|=+=-
T Consensus        21 li~Vyt-G~GKGKTTAAlGlalRA~G-~G~~~~~~~rV~ivQFlK   63 (382)
T PRK07413         21 QLHVYD-GEGKGKSQAALGVVLRTIG-LGICEKRQTRVLLLRFLK   63 (382)
T ss_pred             eEEEEe-CCCCCHHHHHHHHHHHHhc-CCCCcCCCCeEEEEEEEc
Confidence            444443 4577999999999999999 998      999997643

>PRK00625 shikimate kinase; Provisional

Probab=94.05  E-value=0.049  Score=39.24  Aligned_cols=31  Identities=32%  Similarity=0.372  Sum_probs=22.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+..+-.|+||||++..||..+.    .+  .||+|.
T Consensus         3 I~LiG~pGsGKTT~~k~La~~l~----~~--~id~D~   33 (173)
T PRK00625          3 IFLCGLPTVGKTSFGKALAKFLS----LP--FFDTDD   33 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC----CC--EEEhhH
Confidence            34467899999999999987763    33  466664

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=94.03  E-value=0.045  Score=43.87  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=46.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE   87 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~   87 (168)
                      ..+.+-+|.||||++.+|-.+|.. .|-...-+|.|--+.++..-+|..++..
T Consensus        53 vw~tglsgagkttis~ale~~l~~-~gipcy~ldgdnirhgl~knlgfs~edr  104 (627)
T KOG4238|consen   53 VWLTGLSGAGKTTISFALEEYLVS-HGIPCYSLDGDNIRHGLNKNLGFSPEDR  104 (627)
T ss_pred             EEeeccCCCCcceeehHHHHHHHh-cCCcccccCcchhhhhhhhccCCCchhH
Confidence            345678899999999999999999 9999999999999889999999887653

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.11  Score=41.22  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH---hCCCeEEEEeCCCCCCCcccccc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS---KCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~---~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      .+...-+.+|.|||++|.+||..|+-   .+..+..+|+.+... -.+.-|+
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFs  228 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFS  228 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHh
Confidence            34444678899999999999999974   134577888887532 3333343

>PRK14531 adenylate kinase; Provisional

Probab=93.98  E-value=0.069  Score=38.58  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=18.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .++.+.+|+||||++..||..+.
T Consensus         5 i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          5 LLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34468899999999999988764

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.98  E-value=0.049  Score=40.67  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~   71 (168)
                      ..+ +..+..|+|||.+..+++..+.+. .+.||++++++.
T Consensus        35 ~~l-~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~   74 (219)
T PF00308_consen   35 NPL-FLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE   74 (219)
T ss_dssp             SEE-EEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred             Cce-EEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence            344 557788999999999999988762 478999999865

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14528 adenylate kinase; Provisional

Probab=93.94  E-value=0.075  Score=38.57  Aligned_cols=24  Identities=38%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.|.+ .+.+|+||||+|..||..+
T Consensus         2 ~~i~i-~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIF-MGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            44444 6779999999999887665

>PRK14527 adenylate kinase; Provisional

Probab=93.92  E-value=0.076  Score=38.56  Aligned_cols=27  Identities=37%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +++|.+ .+.+|+||||+|..||..+..
T Consensus         6 ~~~i~i-~G~pGsGKsT~a~~La~~~~~   32 (191)
T PRK14527          6 NKVVIF-LGPPGAGKGTQAERLAQELGL   32 (191)
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHhCC
Confidence            455555 567999999999999876643

>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional

Probab=93.91  E-value=0.06  Score=48.06  Aligned_cols=45  Identities=18%  Similarity=0.062  Sum_probs=35.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      .++.+..|+|||+++..++..+.. .|.+|.++|-+-....+...+
T Consensus       452 ~~I~G~sGsGKS~l~k~l~~~~~~-~g~~viiiD~~~sy~~l~~~l  496 (844)
T PRK13721        452 MAVCGTSGAGKTGLIQPLIRSVLD-SGGFAVVFDMGDGYKSLCENM  496 (844)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhhhc-cCCEEEEEeCCCCHHHHHHHc
Confidence            444688999999999999988888 899999999987543344444

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.88  E-value=0.1  Score=45.39  Aligned_cols=43  Identities=23%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+...+.|.+.++-+|-||||+|.-+|+    +.|++|+=|.+--.+
T Consensus       321 s~RP~kKilLL~GppGlGKTTLAHViAk----qaGYsVvEINASDeR  363 (877)
T KOG1969|consen  321 SKRPPKKILLLCGPPGLGKTTLAHVIAK----QAGYSVVEINASDER  363 (877)
T ss_pred             cCCCccceEEeecCCCCChhHHHHHHHH----hcCceEEEecccccc
Confidence            4556788999999999999999877665    379999988886544

>PRK13946 shikimate kinase; Provisional

Probab=93.85  E-value=0.051  Score=39.34  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=24.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|.+ .+..|+||||++..||..|.    .+  .+|.|.
T Consensus        11 ~~I~l-~G~~GsGKsti~~~LA~~Lg----~~--~id~D~   43 (184)
T PRK13946         11 RTVVL-VGLMGAGKSTVGRRLATMLG----LP--FLDADT   43 (184)
T ss_pred             CeEEE-ECCCCCCHHHHHHHHHHHcC----CC--eECcCH
Confidence            44444 57789999999999988773    33  677775

>PRK04182 cytidylate kinase; Provisional

Probab=93.84  E-value=0.063  Score=38.18  Aligned_cols=23  Identities=48%  Similarity=0.492  Sum_probs=18.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++++..|+||||++..||..+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            34557899999999999998765

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.83  E-value=0.066  Score=38.31  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.++.+..|+||||++..|+..+..
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4566789999999999999888754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=93.83  E-value=0.034  Score=39.24  Aligned_cols=25  Identities=40%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           41 GGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        41 gG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|+||||++..||..|..      -++|+|.
T Consensus         1 ~GsGKStvg~~lA~~L~~------~fiD~D~   25 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGR------PFIDLDD   25 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTS------EEEEHHH
T ss_pred             CCCcHHHHHHHHHHHhCC------CccccCH
Confidence            499999999999999866      6789886

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]

Probab=93.81  E-value=0.14  Score=41.15  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ++.+.+++...|+|||+++.+|++.|.+ +|.||-++
T Consensus         2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~-k~~kva~~   37 (354)
T COG0857           2 SRTLLLIPTETGVGKTSISLGLLRALEQ-KGLKVAYF   37 (354)
T ss_pred             cceEEEeccCCCccHHHHHHHHHHHHHH-cCceeEEE
Confidence            7889999999999999999999999999 99998875

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=93.80  E-value=0.092  Score=42.26  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC------C-CCCCcccccccC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD------V-YGPSVPMMMKID   83 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D------~-~~~~l~~~~~~~   83 (168)
                      ...|+++.||+|||++...+-..+.. .+++|+++-.-      . .+..+|..|++.
T Consensus        23 ~~~fv~G~~GtGKs~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~   79 (364)
T PF05970_consen   23 LNFFVTGPAGTGKSFLIKAIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP   79 (364)
T ss_pred             cEEEEEcCCCCChhHHHHHHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence            45677999999999999999998877 77777765321      1 234556666644

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=93.75  E-value=0.052  Score=40.83  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..+.+ ++.+|+||||+|.-+|..+..
T Consensus        51 ~h~lf-~GPPG~GKTTLA~IIA~e~~~   76 (233)
T PF05496_consen   51 DHMLF-YGPPGLGKTTLARIIANELGV   76 (233)
T ss_dssp             -EEEE-ESSTTSSHHHHHHHHHHHCT-
T ss_pred             ceEEE-ECCCccchhHHHHHHHhccCC
Confidence            34444 678899999999888876643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK13949 shikimate kinase; Provisional

Probab=93.72  E-value=0.068  Score=38.26  Aligned_cols=32  Identities=34%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|.++ +..|+||||++..||..+..      -.+|+|.
T Consensus         3 ~I~li-G~~GsGKstl~~~La~~l~~------~~id~D~   34 (169)
T PRK13949          3 RIFLV-GYMGAGKTTLGKALARELGL------SFIDLDF   34 (169)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHcCC------CeecccH
Confidence            45554 67899999999998887743      4677774

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=93.71  E-value=0.16  Score=37.23  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=33.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..|.| .+..|+|||++.-.+-..|.. . +++.+|-.|...
T Consensus        14 ~~i~v-~Gp~GSGKTaLie~~~~~L~~-~-~~~aVI~~Di~t   52 (202)
T COG0378          14 LRIGV-GGPPGSGKTALIEKTLRALKD-E-YKIAVITGDIYT   52 (202)
T ss_pred             EEEEe-cCCCCcCHHHHHHHHHHHHHh-h-CCeEEEeceeec
Confidence            56666 678899999999999999988 4 999999999865

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=93.71  E-value=0.16  Score=41.04  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVY   72 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~   72 (168)
                      .++++.+|+|||+++..++..+.+ .  +.+++.|++...
T Consensus        58 ~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~   96 (394)
T PRK00411         58 VLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQID   96 (394)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcC
Confidence            467899999999999999999987 5  477888888653

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=93.71  E-value=0.11  Score=38.03  Aligned_cols=44  Identities=23%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCCCCCCccccccc
Q 030973           37 ASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKI   82 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~~~~~l~~~~~~   82 (168)
                      +.+..|+|||++..+++..++..   ...++.++|..-  ..+..+-+.
T Consensus        43 i~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~--~~l~~~~~~   89 (205)
T PF01580_consen   43 IAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKG--SDLAPLADL   89 (205)
T ss_dssp             EE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTS--SCCGGGTT-
T ss_pred             EEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCc--cccchhhhh
Confidence            35788899999999999999872   256777777753  244444433

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.65  E-value=0.12  Score=30.79  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=20.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.+++++.|+||||+--++-..|--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5666899999999999888877743

>CHL00095 clpC Clp protease ATP binding subunit

Probab=93.64  E-value=0.33  Score=43.32  Aligned_cols=38  Identities=29%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..++.+..|+|||++|..||..+-. .+.+++-+|+...
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~-~~~~~~~~d~s~~  578 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFG-SEDAMIRLDMSEY  578 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcC-CccceEEEEchhc
Confidence            3456888999999999999999876 6678888887653

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=93.64  E-value=0.075  Score=37.74  Aligned_cols=29  Identities=38%  Similarity=0.543  Sum_probs=23.0

Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|+||||++..|+..+..      ..+|.|...
T Consensus         2 G~sGsGKSTla~~la~~l~~------~~~~~d~~~   30 (163)
T PRK11545          2 GVSGSGKSAVASEVAHQLHA------AFLDGDFLH   30 (163)
T ss_pred             CCCCCcHHHHHHHHHHHhCC------eEEeCccCC
Confidence            56899999999999887733      677888754

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=93.62  E-value=0.086  Score=40.34  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=20.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQ   61 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g   61 (168)
                      ++.+.+|+||||+|..+|..+.+ .|
T Consensus        46 ll~GppGtGKTtlA~~ia~~l~~-~~   70 (261)
T TIGR02881        46 IFKGNPGTGKTTVARILGKLFKE-MN   70 (261)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHh-cC
Confidence            34688999999999999998876 44

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.61  E-value=0.39  Score=40.31  Aligned_cols=27  Identities=33%  Similarity=0.500  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.+.| ++..|+||||+|..+|..+--
T Consensus        35 ~ha~Lf-~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964         35 PQSILL-VGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             CceEEE-ECCCCccHHHHHHHHHHHHcC
Confidence            344555 678899999999999998754

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=93.60  E-value=0.15  Score=37.58  Aligned_cols=32  Identities=41%  Similarity=0.368  Sum_probs=23.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++|++ .+..|+||||++..|+    . .|.  .+||+|.
T Consensus         2 ~~igi-tG~igsGKst~~~~l~----~-~g~--~vid~D~   33 (200)
T PRK14734          2 LRIGL-TGGIGSGKSTVADLLS----S-EGF--LIVDADQ   33 (200)
T ss_pred             eEEEE-ECCCCCCHHHHHHHHH----H-CCC--eEEeCcH
Confidence            45666 5677999999988887    3 565  4688884

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=93.59  E-value=0.076  Score=37.44  Aligned_cols=23  Identities=48%  Similarity=0.494  Sum_probs=18.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      -|.| .+.+|+||||++..||..+
T Consensus         9 NILv-tGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    9 NILV-TGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             CEEE-eCCCCCCchhHHHHHHHHh
Confidence            3555 5789999999999999543

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=93.58  E-value=0.094  Score=37.24  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .+-+.++-+..|+||||++..|+..|..      =.+|+|-.+|
T Consensus        11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~------~F~dgDd~Hp   48 (191)
T KOG3354|consen   11 FKYVIVVMGVSGSGKSTIGKALSEELGL------KFIDGDDLHP   48 (191)
T ss_pred             CceeEEEEecCCCChhhHHHHHHHHhCC------cccccccCCC
Confidence            4534555678899999999999988865      3689998764

>CHL00181 cbbX CbbX; Provisional

Probab=93.57  E-value=0.099  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=25.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~   69 (168)
                      .++.+.+|+||||+|..+|..+.. .|.    .++.++.
T Consensus        62 ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~   99 (287)
T CHL00181         62 MSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR   99 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH
Confidence            444789999999999999999876 554    3555553

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=93.57  E-value=0.16  Score=37.72  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlli   67 (168)
                      +.+..+..|+|||.+|...|..+.. .|+  |++++
T Consensus        21 ~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~   55 (205)
T PF02562_consen   21 LVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIIT   55 (205)
T ss_dssp             EEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEE
Confidence            5566789999999999999998877 443  55555

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK13695 putative NTPase; Provisional

Probab=93.53  E-value=0.18  Score=36.02  Aligned_cols=28  Identities=39%  Similarity=0.541  Sum_probs=23.7

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      ..+.+|+||||++..++..+.. .|.++.
T Consensus         5 ltG~~G~GKTTll~~i~~~l~~-~G~~~~   32 (174)
T PRK13695          5 ITGPPGVGKTTLVLKIAELLKE-EGYKVG   32 (174)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence            3577899999999999998887 788865

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=93.53  E-value=0.11  Score=45.87  Aligned_cols=37  Identities=22%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEeCCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVYG   73 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD~D~~~   73 (168)
                      ++.++.|+|||+++..++..+.+ .|. +|++||-+-..
T Consensus       438 ~I~G~tGsGKS~~~~~l~~~~~~-~~~~~v~iiD~~~~~  475 (785)
T TIGR00929       438 LIFGPTGSGKTTLLNFLLAQMQK-YGGMTIFAFDKDRGM  475 (785)
T ss_pred             EEECCCCCCHHHHHHHHHHHhhc-cCCCeEEEEeCCCCh
Confidence            44688899999999999988888 776 99999987544

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=93.53  E-value=0.089  Score=38.57  Aligned_cols=33  Identities=39%  Similarity=0.519  Sum_probs=23.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++ .+..|+||||++..|+..+    |..|  +|+|.-
T Consensus         3 ~i~i-tG~~gsGKst~~~~l~~~~----g~~~--i~~D~~   35 (195)
T PRK14730          3 RIGL-TGGIASGKSTVGNYLAQQK----GIPI--LDADIY   35 (195)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHhh----CCeE--eeCcHH
Confidence            4555 6788999999988877532    5444  588863

>smart00763 AAA_PrkA PrkA AAA domain

Probab=93.52  E-value=0.096  Score=42.07  Aligned_cols=39  Identities=21%  Similarity=0.066  Sum_probs=27.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~   69 (168)
                      .+.|....+.+|+||||+|..|+..+.+-   -.-+...+.+
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            34555567888999999999999999761   1225555555

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK10536 hypothetical protein; Provisional

Probab=93.46  E-value=0.15  Score=39.21  Aligned_cols=125  Identities=10%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc---------------------cC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------------------DM   92 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~---------------------~~   92 (168)
                      +.+..+..|+|||++|..+|...-.....+.++| ..|.- .....+|.-+.. +.+                     ..
T Consensus        76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v-~~ge~LGfLPG~-~~eK~~p~~~pi~D~L~~~~~~~~~~  152 (262)
T PRK10536         76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVL-QADEDLGFLPGD-IAEKFAPYFRPVYDVLVRRLGASFMQ  152 (262)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCC-CchhhhCcCCCC-HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            6677789999999999999996442134444444 23322 223444433321 111                     00


Q ss_pred             ceeecccCCeeeeecCccCCCCCCc-----ccCchhHHHHHHHHHHhhcCCCCcEEE------EeCCCCCCHHHHHHHhh
Q 030973           93 KMVPIENYGVKCMSMGFLVPSSSPV-----VWRGPMVMSALRKMSREVDWGNLDILV------IDMPPGTGDAQLTTTQT  161 (168)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~yD~Ii------iD~p~~~~~~~~~~~~~  161 (168)
                      .........+.+.|..++-...-..     ..........+..++..+. +.--+||      ||.|.+-+.....+.+.
T Consensus       153 ~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g-~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~  231 (262)
T PRK10536        153 YCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLG-ENVTVIVNGDITQCDLPRGVKSGLSDALER  231 (262)
T ss_pred             HHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcC-CCCEEEEeCChhhccCCCCCCCCHHHHHHH
Confidence            0111122345555554332222111     1112234567777777776 6666666      58876544444444444


Q ss_pred             c
Q 030973          162 L  162 (168)
Q Consensus       162 ~  162 (168)
                      +
T Consensus       232 ~  232 (262)
T PRK10536        232 F  232 (262)
T ss_pred             h
Confidence            4

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=93.46  E-value=0.096  Score=38.28  Aligned_cols=34  Identities=35%  Similarity=0.362  Sum_probs=24.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |.+|++ .+.-|+||||++..|+.     .|.  -+||+|.-
T Consensus         2 ~~~i~l-tG~~gsGKst~~~~l~~-----~g~--~~i~~D~~   35 (194)
T PRK00081          2 MLIIGL-TGGIGSGKSTVANLFAE-----LGA--PVIDADAI   35 (194)
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHH-----cCC--EEEEecHH
Confidence            455666 56789999999887764     353  56888873

>PLN03025 replication factor C subunit; Provisional

Probab=93.46  E-value=0.11  Score=40.98  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+..|+||||++..+|..+.. .+.+..+++.+.
T Consensus        38 ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~   72 (319)
T PLN03025         38 ILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNA   72 (319)
T ss_pred             EEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecc
Confidence            45788999999999999999865 554444555544

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=93.45  E-value=0.21  Score=37.06  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|+| =+--|+||||.+..|+..|.+ .|.+|++.=--
T Consensus         3 g~fI~i-EGiDGaGKTT~~~~L~~~l~~-~g~~v~~trEP   40 (208)
T COG0125           3 GMFIVI-EGIDGAGKTTQAELLKERLEE-RGIKVVLTREP   40 (208)
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence            344555 667799999999999999999 99988887553

>PRK13976 thymidylate kinase; Provisional

Probab=93.45  E-value=0.16  Score=37.69  Aligned_cols=32  Identities=31%  Similarity=0.248  Sum_probs=26.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC-C-CeEEEE
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLL   67 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~-g-~rVlli   67 (168)
                      .++-+-.|+||||.+..|+..|.. . | .+|.+.
T Consensus         3 Iv~EGiDGsGKsTq~~~L~~~L~~-~~g~~~v~~~   36 (209)
T PRK13976          3 ITFEGIDGSGKTTQSRLLAEYLSD-IYGENNVVLT   36 (209)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-hcCCcceEEe
Confidence            345678899999999999999998 6 5 577655

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=93.36  E-value=0.1  Score=46.53  Aligned_cols=40  Identities=30%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+-.+++-+-+|.||||+.+.|-+.|.. .|++||+.-.-.
T Consensus       684 aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsyTh  723 (1100)
T KOG1805|consen  684 AEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSYTH  723 (1100)
T ss_pred             ccchheeecCCCCCchhhHHHHHHHHHH-cCCeEEEEehhh
Confidence            4456677789999999999999999999 999999987643

>PLN03210 Resistant to P

Probab=93.33  E-value=0.16  Score=46.93  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..++|+++ +.||+||||+|..++..+.. .-.-.+.+|
T Consensus       206 ~~~vvgI~-G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~  242 (1153)
T PLN03210        206 EVRMVGIW-GSSGIGKTTIARALFSRLSR-QFQSSVFID  242 (1153)
T ss_pred             ceEEEEEE-cCCCCchHHHHHHHHHHHhh-cCCeEEEee
Confidence            47788775 78999999999999988877 433334454

syringae 6; Provisional

>PRK14532 adenylate kinase; Provisional

Probab=93.31  E-value=0.078  Score=38.28  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=17.2

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.+.+|+||||+|..||..+
T Consensus         4 ~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          4 ILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEECCCCCCHHHHHHHHHHHc
Confidence            446899999999999988644

>PRK14530 adenylate kinase; Provisional

Probab=93.29  E-value=0.098  Score=38.75  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .|.+ -+.+|+||||++..||..+
T Consensus         5 ~I~i-~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          5 RILL-LGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHHh
Confidence            4555 5788999999999998766

>COG3911 Predicted ATPase [General function prediction only]

Probab=93.29  E-value=0.11  Score=36.65  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      .+.|.++.+|.||||+-+.|+.
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~   31 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALAR   31 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHH
Confidence            4677789999999999887764

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=93.27  E-value=0.096  Score=43.46  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=27.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+.++++-+|+||||++..||..+.-     +.+|..|...
T Consensus       255 p~vil~~G~~G~GKSt~a~~LA~~lg~-----~~ii~tD~iR  291 (475)
T PRK12337        255 PLHVLIGGVSGVGKSVLASALAYRLGI-----TRIVSTDAVR  291 (475)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC-----cEEeehhHHH
Confidence            456666889999999999999987643     2366777643

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.26  E-value=0.14  Score=40.98  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +-+.++++..|+||||+...+...+....+.+++.++-
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd  159 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED  159 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC
Confidence            34556688899999999999988876513566666643

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=93.26  E-value=0.11  Score=44.58  Aligned_cols=37  Identities=14%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~   71 (168)
                      .++.+..|+|||.++..+|..+.+. .|++|+++.++.
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee  354 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE  354 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence            4667889999999999999998751 389999999864

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=93.25  E-value=0.092  Score=37.01  Aligned_cols=23  Identities=48%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      |.++++..|+||||++..||..+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            45568899999999999988754

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PLN02422 dephospho-CoA kinase

Probab=93.24  E-value=0.15  Score=38.55  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.|++ .+.-|+||||++..|+    + .|..  +||+|.-
T Consensus         2 ~~igl-tG~igsGKstv~~~l~----~-~g~~--~idaD~~   34 (232)
T PLN02422          2 RVVGL-TGGIASGKSTVSNLFK----S-SGIP--VVDADKV   34 (232)
T ss_pred             eEEEE-ECCCCCCHHHHHHHHH----H-CCCe--EEehhHH
Confidence            45666 5788999999988876    3 5654  5888873

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=93.23  E-value=0.093  Score=38.30  Aligned_cols=35  Identities=29%  Similarity=0.245  Sum_probs=21.3

Q ss_pred             EEEecCCCCCChhhHHHHH-HHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNL-AVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~L-A~~la~~~g~rVlliD~D   70 (168)
                      |.++.++.|+|||..|+.. ....-+ .|++|+. +.+
T Consensus         2 I~~~~G~pGsGKS~~av~~~i~~~l~-~gr~V~t-ni~   37 (193)
T PF05707_consen    2 IYLITGKPGSGKSYYAVSYVIIPALK-KGRPVYT-NIP   37 (193)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHH-GGG-S---EEE---T
T ss_pred             EEEEEcCCCCcHhHHHHHHHHHHHHh-CCCEEEE-ccC
Confidence            6778899999999999888 655555 6777665 665

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=93.20  E-value=0.15  Score=44.93  Aligned_cols=33  Identities=33%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ++++.+.+|+||||+...+...+.. .|++|+++
T Consensus       370 ~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~  402 (744)
T TIGR02768       370 IAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGA  402 (744)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEE
Confidence            6778899999999999999888888 89999987

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=93.17  E-value=0.098  Score=39.81  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=20.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.++.+..|+||||++..++..+..
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            4556889999999999999887764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=93.12  E-value=0.075  Score=46.19  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..+++++|| .+.+|+|||+++..+|.+|.+
T Consensus       435 s~qGkIlCf-~GPPGVGKTSI~kSIA~ALnR  464 (906)
T KOG2004|consen  435 SVQGKILCF-VGPPGVGKTSIAKSIARALNR  464 (906)
T ss_pred             cCCCcEEEE-eCCCCCCcccHHHHHHHHhCC
Confidence            446888888 567899999999999999977

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=93.08  E-value=0.12  Score=39.42  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |.+|++| +.-|+||||++..|...+    |.  -+||+|.-
T Consensus         1 M~iIGlT-GgIgSGKStVs~~L~~~~----G~--~viDaD~i   35 (244)
T PTZ00451          1 MILIGLT-GGIACGKSTVSRILREEH----HI--EVIDADLV   35 (244)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHc----CC--eEEehHHH
Confidence            3467774 577999999987665432    44  45899873

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.07  E-value=0.094  Score=37.82  Aligned_cols=21  Identities=38%  Similarity=0.419  Sum_probs=17.1

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.+.+|+||||+|..||..+
T Consensus         3 ~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           3 LLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEECCCCCCHHHHHHHHHHHc
Confidence            445679999999999988764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.01  E-value=0.075  Score=37.49  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=15.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      |+| ++..|+||||++..|+..
T Consensus         2 I~i-~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVI-TGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEE-E--TTSHHHHHHHHHHHH
T ss_pred             EEE-ECCCCCCHHHHHHHHHHc
Confidence            444 677899999999998865

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=92.98  E-value=0.17  Score=40.20  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD   68 (168)
                      .++++..|+||||+...|...+.. ..+.|++.|+
T Consensus       147 ilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE  181 (323)
T PRK13833        147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE  181 (323)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence            456899999999999999888753 1467888877

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=92.97  E-value=0.14  Score=42.49  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~   71 (168)
                      .++.+..|+|||.++..++..+.+ ..+.+|+++.++.
T Consensus       144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~  181 (450)
T PRK14087        144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE  181 (450)
T ss_pred             eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence            455788999999999999998874 1579999998754

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=92.94  E-value=0.13  Score=45.79  Aligned_cols=46  Identities=20%  Similarity=0.150  Sum_probs=34.0

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      .++.+..|+||||++..|+..+.+..|-+|+++|-+-..-.+...+
T Consensus       444 ~~I~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s~~~l~~al  489 (811)
T PRK13873        444 TLVVGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGSIRAATLAM  489 (811)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHhc
Confidence            3356888999999999998876552488999999987543333333

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=92.94  E-value=0.29  Score=36.77  Aligned_cols=42  Identities=21%  Similarity=0.172  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ...|++.+.-+-++-|||++|..|+++|.- .|.++=++....
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w-~g~~~~vFn~g~   50 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNW-LGVKTKVFNVGD   50 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEEHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCcceeeccc
Confidence            447888899999999999999999999999 999998887654

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=92.92  E-value=0.28  Score=43.70  Aligned_cols=40  Identities=28%  Similarity=0.188  Sum_probs=36.0

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ++-..+.+.|++..-++|||.+++.|+..++. .|.+|.++
T Consensus        23 ~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~-~g~~~~y~   62 (817)
T PLN02974         23 LPLSCPAFAVWGANTAVGKTLVSAGLAAAAAS-RRSPVLYV   62 (817)
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEE
Confidence            44557899999999999999999999999999 99998875

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=92.90  E-value=0.13  Score=40.76  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=35.8

Q ss_pred             CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+||+|=| .-||.|||-++..||..|.+ +|.|+-++.=...+
T Consensus        47 vPVI~VGNltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRGYgg   89 (336)
T COG1663          47 VPVICVGNLTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRGYGG   89 (336)
T ss_pred             CCEEEEccEEECCCCcCHHHHHHHHHHHh-cCCeeEEEecCcCC
Confidence            67787755 36999999999999999999 99999999876544

>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family

Probab=92.89  E-value=0.21  Score=43.11  Aligned_cols=35  Identities=23%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -+.-|+|||++...|+....+ .|..|+++|-+-..
T Consensus       186 ~GtTGsGKT~l~~~li~q~i~-~g~~vi~fDpkgD~  220 (643)
T TIGR03754       186 LGTTRVGKTRLAELLITQDIR-RGDVVIVFDPKGDA  220 (643)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCH
Confidence            477899999999999999999 99999999988744

Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=92.85  E-value=0.11  Score=37.82  Aligned_cols=24  Identities=42%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+.|+.+|+||||++..|=...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            456668999999999988775443

>PRK07413 hypothetical protein; Validated

Probab=92.84  E-value=0.81  Score=37.14  Aligned_cols=37  Identities=27%  Similarity=0.242  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCC------eEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQL------KVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~------rVlliD~D~   71 (168)
                      .|.|+. ..|=||||.|..+|...+- .|+      ||+++=+=-
T Consensus       202 ~i~VYT-G~GKGKTTAAlGlAlRA~G-~G~~~~~~~rV~ivQFlK  244 (382)
T PRK07413        202 GIEIYT-GEGKGKSTSALGKALQAIG-RGISQDKSHRVLILQWLK  244 (382)
T ss_pred             eEEEEe-CCCCCchHHHHHHHHHHhc-CCCCcccCceEEEEEECC
Confidence            344433 3467999999999999999 997      999987643

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=92.81  E-value=0.62  Score=41.19  Aligned_cols=27  Identities=33%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.+. +++..|+||||++..||+.|-.
T Consensus        38 ~HAyL-FtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         38 HHAYL-FTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             CeEEE-EECCCCCCHHHHHHHHHHHhcC
Confidence            34444 5677899999999999998864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=92.76  E-value=0.13  Score=35.63  Aligned_cols=29  Identities=41%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+.+|+||||++..||..+    |.+  .+|.|.
T Consensus         4 l~G~~GsGKstla~~la~~l----~~~--~~~~d~   32 (154)
T cd00464           4 LIGMMGAGKTTVGRLLAKAL----GLP--FVDLDE   32 (154)
T ss_pred             EEcCCCCCHHHHHHHHHHHh----CCC--EEEchH
Confidence            46789999999999998876    333  456664

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.75  E-value=0.29  Score=36.16  Aligned_cols=41  Identities=17%  Similarity=0.110  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +++.=.|++..+|+|||--...-|..+.+ .|..|++==.++
T Consensus         3 rGrLkIflG~apGVGKTy~ML~ea~~l~~-~G~DVViG~vet   43 (211)
T PF02702_consen    3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKE-QGVDVVIGYVET   43 (211)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHH-TT--EEEEE---
T ss_pred             CccEEEEEecCCCCCHHHHHHHHHHHHHH-CCCCEEEEEecC
Confidence            36677788999999999999999999999 999998654444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=92.72  E-value=0.23  Score=43.69  Aligned_cols=32  Identities=38%  Similarity=0.469  Sum_probs=24.4

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA   69 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~   69 (168)
                      ..+.+|+|||+++..||..+.. .       +++++-+|+
T Consensus       208 L~G~pG~GKT~l~~~la~~~~~-~~~p~~l~~~~~~~~~~  246 (731)
T TIGR02639       208 LVGEPGVGKTAIAEGLALRIAE-GKVPENLKNAKIYSLDM  246 (731)
T ss_pred             EECCCCCCHHHHHHHHHHHHHh-CCCchhhcCCeEEEecH
Confidence            3478899999999999999976 4       445555553

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=92.65  E-value=0.23  Score=40.00  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEE
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASK--CQLKVGLL   67 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlli   67 (168)
                      -+.++++..|+||||+...|...+...  .+++++.+
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~  171 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY  171 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe
Confidence            344557888999999999999988651  23455544

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=92.64  E-value=1.8  Score=34.41  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++++==|+||||+-.++....   .|+|+.+|==+..-
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~---~g~kiAVIVNEfGE   39 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANR---DGKKIAVIVNEFGE   39 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhcc---CCCcEEEEEecCcc
Confidence            3444455899999998887654   58899888776644

>TIGR01351 adk adenylate kinases

Probab=92.55  E-value=0.12  Score=38.16  Aligned_cols=20  Identities=35%  Similarity=0.390  Sum_probs=16.3

Q ss_pred             ecCCCCCChhhHHHHHHHHH
Q 030973           37 ASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+.+|+||||+|..||..+
T Consensus         4 i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         4 LLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EECCCCCCHHHHHHHHHHHc
Confidence            35679999999999988644

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=92.54  E-value=0.13  Score=38.07  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=17.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      |.| .+.+|+||||+|..||..+
T Consensus         3 I~v-~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          3 LIL-LGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHh
Confidence            444 5679999999999888665

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=92.54  E-value=1.7  Score=35.01  Aligned_cols=26  Identities=35%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      --.++++..|+||||+|..+|..+-.
T Consensus        46 ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         46 HALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             eeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            34555788899999999999998865

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=92.48  E-value=0.17  Score=39.81  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=26.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~D   70 (168)
                      .++.+..|+||||++..+|..+.. .+  .+++.+++.
T Consensus        39 lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~   75 (337)
T PRK12402         39 LLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVA   75 (337)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechh
Confidence            345788899999999999998865 43  456677653

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein

Probab=92.42  E-value=0.14  Score=44.99  Aligned_cols=38  Identities=29%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             CCeEEEEecCCCCCChhhHHH-HHHHHHHHhCCCeEEEEeC
Q 030973           30 VKDVIAVASGKGGVGKSTTAV-NLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~-~LA~~la~~~g~rVlliD~   69 (168)
                      ..++.++-++. |+||||... -|...+.. .+.+||+|-.
T Consensus        48 ~~~V~vVRSpM-GTGKTtaLi~wLk~~l~~-~~~~VLvVSh   86 (824)
T PF02399_consen   48 KRGVLVVRSPM-GTGKTTALIRWLKDALKN-PDKSVLVVSH   86 (824)
T ss_pred             CCCeEEEECCC-CCCcHHHHHHHHHHhccC-CCCeEEEEEh
Confidence            34555555555 789998543 34444444 6899999965

It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.41  E-value=0.86  Score=39.68  Aligned_cols=26  Identities=35%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      -..++++..|+||||++..||..|-.
T Consensus        39 HA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         39 HAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34455788899999999999998864

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=92.37  E-value=0.25  Score=36.70  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEEeCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASK--CQLKVGLLDADV   71 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlliD~D~   71 (168)
                      +...+.+..+|+.-|+||||++.+|-..+.+.  ..+++.-+..|-
T Consensus        27 G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDD   72 (282)
T KOG2878|consen   27 GDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDD   72 (282)
T ss_pred             CCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecc
Confidence            44467888889999999999999999999883  234787777775

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=92.35  E-value=0.15  Score=37.88  Aligned_cols=24  Identities=46%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.++++.=|+||||+|..||.++.
T Consensus         6 ~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           6 VIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             EEEEecccccCHHHHHHHHHHHhC
Confidence            444588889999999999998874

>COG0645 Predicted kinase [General function prediction only]

Probab=92.34  E-value=0.13  Score=36.76  Aligned_cols=26  Identities=38%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.++.+-.|+||||+|..|+..+..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA   27 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGA   27 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCc
Confidence            46777899999999999999988865

>PTZ00088 adenylate kinase 1; Provisional

Probab=92.34  E-value=0.19  Score=37.82  Aligned_cols=22  Identities=41%  Similarity=0.397  Sum_probs=17.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      |.+ .+.+|+||||+|..||..+
T Consensus         9 Ivl-~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          9 IVL-FGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHh
Confidence            444 4679999999999998765

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=92.33  E-value=0.063  Score=39.62  Aligned_cols=27  Identities=11%  Similarity=0.214  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          124 VMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       124 ~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                      ..+.+.++...+. ..|.||++|.|=-+
T Consensus        92 r~em~ke~~~~~l-~G~r~ivlDiPLLF  118 (225)
T KOG3220|consen   92 RKEMFKEILKLLL-RGYRVIVLDIPLLF  118 (225)
T ss_pred             HHHHHHHHHHHHh-cCCeEEEEechHHH
Confidence            3456677777777 89999999999643

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=92.33  E-value=0.19  Score=37.21  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=25.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -+|++ .+.-|+||||++..|+..    .|..  ++|+|.-.
T Consensus         7 ~~Igl-TG~iGsGKStv~~~l~~~----lg~~--vidaD~i~   41 (204)
T PRK14733          7 YPIGI-TGGIASGKSTATRILKEK----LNLN--VVCADTIS   41 (204)
T ss_pred             EEEEE-ECCCCCCHHHHHHHHHHH----cCCe--EEeccHHH
Confidence            34555 567899999998877753    3555  58888744

>TIGR00101 ureG urease accessory protein UreG

Probab=92.30  E-value=0.29  Score=35.97  Aligned_cols=38  Identities=29%  Similarity=0.454  Sum_probs=29.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .|++ .+..|+||||+...+...+.. . .++.++..|...
T Consensus         3 ~i~i-~G~~GsGKTTll~~l~~~l~~-~-~~~~~~~~d~~~   40 (199)
T TIGR00101         3 KIGV-AGPVGSGKTALIEALTRALRQ-K-YQLAVITNDIYT   40 (199)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHhhCc-C-CcEEEEeCCcCC
Confidence            3445 578899999999999988765 3 468888887654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG3910 Predicted ATPase [General function prediction only]

Probab=92.29  E-value=0.11  Score=38.10  Aligned_cols=61  Identities=20%  Similarity=0.122  Sum_probs=40.0

Q ss_pred             cCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHH--hCCCeEEEEeCCCCCCCcccccc
Q 030973           11 LGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALAS--KCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        11 ~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~--~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      +|.+...++|+.          -|.|+.+-.|+||||+--.+|..+.-  ..|.|=.--+.|.++..+...+.
T Consensus        26 ~r~l~~~LeF~a----------pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k   88 (233)
T COG3910          26 FRHLEERLEFRA----------PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAK   88 (233)
T ss_pred             HHhhhhhccccC----------ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHH
Confidence            344445666666          37888899999999999988876542  03555444556666555555543

>TIGR00017 cmk cytidylate kinase

Probab=92.28  E-value=0.18  Score=37.63  Aligned_cols=24  Identities=46%  Similarity=0.660  Sum_probs=19.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +|++ .+..|+||||++..||..+.
T Consensus         4 ~i~i-~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         4 IIAI-DGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHHhC
Confidence            4455 67889999999999987664

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=92.23  E-value=0.21  Score=38.20  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .++.+++++ .+|+||||++..++..+..
T Consensus        15 ~Gqr~~I~G-~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          15 KGQRGLIVA-PPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCEEEEEC-CCCCCHHHHHHHHHhcccc
Confidence            367777765 5899999999999988766

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA

Probab=92.21  E-value=0.2  Score=38.65  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=26.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCC----CeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQ----LKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g----~rVlliD~D~   71 (168)
                      -+.|. +..|+||||+.......+.. .+    .++|++-+.-
T Consensus        15 ~~lV~-a~AGSGKT~~l~~ri~~ll~-~~~~~~~~Il~lTft~   55 (315)
T PF00580_consen   15 PLLVN-AGAGSGKTTTLLERIAYLLY-EGGVPPERILVLTFTN   55 (315)
T ss_dssp             EEEEE-E-TTSSHHHHHHHHHHHHHH-TSSSTGGGEEEEESSH
T ss_pred             CEEEE-eCCCCCchHHHHHHHHHhhc-cccCChHHheecccCH
Confidence            34443 45999999988887777666 44    6888887654

THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....

>PLN02165 adenylate isopentenyltransferase

Probab=92.20  E-value=0.16  Score=40.41  Aligned_cols=34  Identities=32%  Similarity=0.575  Sum_probs=24.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++|++ .+..|+|||+++..||..+..      -+|++|.
T Consensus        43 g~iivI-iGPTGSGKStLA~~LA~~l~~------eIIsaDs   76 (334)
T PLN02165         43 DKVVVI-MGATGSGKSRLSVDLATRFPS------EIINSDK   76 (334)
T ss_pred             CCEEEE-ECCCCCcHHHHHHHHHHHcCC------ceecCCh
Confidence            455555 567899999999998877632      4667764

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=92.18  E-value=0.27  Score=39.07  Aligned_cols=43  Identities=26%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      .|.+ .+..|+||||++..+|..+    |.+.+-|.++..- +...++|
T Consensus        66 ~ilL-~G~pGtGKTtla~~lA~~l----~~~~~rV~~~~~l-~~~DliG  108 (327)
T TIGR01650        66 RVMV-QGYHGTGKSTHIEQIAARL----NWPCVRVNLDSHV-SRIDLVG  108 (327)
T ss_pred             cEEE-EeCCCChHHHHHHHHHHHH----CCCeEEEEecCCC-ChhhcCC
Confidence            3444 6788999999999999877    4567777777643 3333444

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=92.10  E-value=0.25  Score=39.40  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=29.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC-----CeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ-----LKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g-----~rVlliD~D~   71 (168)
                      ..++++.+|+|||+++..++..+.+...     .+++.|++..
T Consensus        42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~   84 (365)
T TIGR02928        42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI   84 (365)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence            4566889999999999999998875122     4678888754

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK14738 gmk guanylate kinase; Provisional

Probab=92.09  E-value=0.19  Score=37.11  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=17.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      ..+.++.+.+|+||||++..|..
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            34455588999999999877753

>PRK01184 hypothetical protein; Provisional

Probab=92.08  E-value=0.24  Score=35.60  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=19.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +.+..+..|+||||++. +   +.+ .|..++-.
T Consensus         3 ~i~l~G~~GsGKsT~a~-~---~~~-~g~~~i~~   31 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-I---ARE-MGIPVVVM   31 (184)
T ss_pred             EEEEECCCCCCHHHHHH-H---HHH-cCCcEEEh
Confidence            44457889999999764 3   344 67666433

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=92.07  E-value=0.32  Score=39.68  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV   71 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~   71 (168)
                      .+++..+++ +.+|+||||++.+++..... .  +.++.++-.+.
T Consensus       167 GkGQR~lIv-gppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgE  209 (416)
T PRK09376        167 GKGQRGLIV-APPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDE  209 (416)
T ss_pred             ccCceEEEe-CCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCC
Confidence            346677776 56899999999999999987 4  33433344444

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=92.06  E-value=0.17  Score=34.89  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..+|++ .+.-|+||||++..++..+..
T Consensus        22 ~~~i~l-~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        22 GTVVLL-KGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHcCC
Confidence            445555 778899999999999987743

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=92.04  E-value=0.31  Score=43.69  Aligned_cols=40  Identities=23%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ++.+..|+|||+++..|+..+.+-.|.+|.++|-|-..-.
T Consensus       492 ~I~G~tGsGKS~l~~~L~~~~~k~~~~~v~i~D~~~s~~~  531 (852)
T PRK13891        492 FMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMSMYP  531 (852)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhcCCCEEEEEcCCccccc
Confidence            5568899999999999999887624789999998764433

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=92.02  E-value=0.16  Score=40.40  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      -.++++..|+||||+...|...+..  +.|++.|+
T Consensus       162 nili~G~tgSGKTTll~aL~~~ip~--~~ri~tiE  194 (332)
T PRK13900        162 NIIISGGTSTGKTTFTNAALREIPA--IERLITVE  194 (332)
T ss_pred             cEEEECCCCCCHHHHHHHHHhhCCC--CCeEEEec
Confidence            3445788899999999999887754  67898886

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=92.01  E-value=0.16  Score=36.39  Aligned_cols=32  Identities=38%  Similarity=0.459  Sum_probs=23.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|.+ .+..|+||||++..||..+.    .  -++|.|.
T Consensus         6 ~I~l-iG~~GaGKStl~~~La~~l~----~--~~vd~D~   37 (172)
T PRK05057          6 NIFL-VGPMGAGKSTIGRQLAQQLN----M--EFYDSDQ   37 (172)
T ss_pred             EEEE-ECCCCcCHHHHHHHHHHHcC----C--cEEECCc
Confidence            3444 57789999999999888653    2  3577774

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=91.96  E-value=0.16  Score=36.76  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=17.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      +.++.+..|+||||+...|+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4555789999999999888553

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=91.93  E-value=0.22  Score=35.72  Aligned_cols=34  Identities=26%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++.+..|+||||+|..++..+    +.+++.|.+..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~   36 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQ   36 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCC
Confidence            34667889999999999887643    55777777643

>cd00881 GTP_translation_factor GTP translation factor family

Probab=91.91  E-value=0.32  Score=34.42  Aligned_cols=30  Identities=17%  Similarity=0.139  Sum_probs=22.3

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .+..|+||||+...|...... .++.....|
T Consensus         5 ~G~~~~GKStlln~l~~~~~~-~~~~~~~~~   34 (189)
T cd00881           5 AGHVDHGKTTLTERLLYVTGD-IERDGTVEE   34 (189)
T ss_pred             EeCCCCCHHHHHHHHHHhcCC-CCcCCceec
Confidence            468899999999999877655 555555544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=91.89  E-value=0.35  Score=39.13  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=27.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~   69 (168)
                      +.++++..|+||||+...|..++.+. .+.+++.|+-
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEd  187 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYED  187 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            44568899999999999999988751 2467777753

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=91.88  E-value=0.3  Score=34.44  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=25.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~   69 (168)
                      .+++.+..|+|||+++...+..... .+  ++++++--
T Consensus        26 ~~~i~~~~GsGKT~~~~~~~~~~~~-~~~~~~~l~~~p   62 (201)
T smart00487       26 DVILAAPTGSGKTLAALLPALEALK-RGKGKRVLVLVP   62 (201)
T ss_pred             cEEEECCCCCchhHHHHHHHHHHhc-ccCCCcEEEEeC
Confidence            4455678899999977777777766 54  77887744

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=91.86  E-value=0.24  Score=39.21  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=27.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~   71 (168)
                      -.++++..|+||||+...|+..+.. ....|++.|+-..
T Consensus       150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~  188 (319)
T PRK13894        150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG  188 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence            3444689999999999999987642 1467888777543

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=91.85  E-value=0.31  Score=42.89  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEe
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLD   68 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD   68 (168)
                      +.++.+.+|+||||++..+...+.+ .|  ++|++.-
T Consensus       340 ~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~A  375 (720)
T TIGR01448       340 VVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAA  375 (720)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEe
Confidence            7778899999999999999998888 77  6777653

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>COG1159 Era GTPase [General function prediction only]

Probab=91.77  E-value=0.28  Score=38.22  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      --|++ -+++++||||+.-+       ..|.|+.++.--+|. .-+...|
T Consensus         7 GfVaI-iGrPNvGKSTLlN~-------l~G~KisIvS~k~QT-TR~~I~G   47 (298)
T COG1159           7 GFVAI-IGRPNVGKSTLLNA-------LVGQKISIVSPKPQT-TRNRIRG   47 (298)
T ss_pred             EEEEE-EcCCCCcHHHHHHH-------HhcCceEeecCCcch-hhhheeE
Confidence            34555 47999999999543       379999999877765 3334443

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=91.66  E-value=0.34  Score=37.72  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+..|+||||++..++..+.. .+.+..+++++.
T Consensus        42 ll~G~~G~GKt~~~~~l~~~l~~-~~~~~~~i~~~~   76 (319)
T PRK00440         42 LFAGPPGTGKTTAALALARELYG-EDWRENFLELNA   76 (319)
T ss_pred             EEECCCCCCHHHHHHHHHHHHcC-CccccceEEecc
Confidence            66889999999999999999876 665555555543

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.63  E-value=0.18  Score=36.86  Aligned_cols=25  Identities=36%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+..|+||||++..|+..+
T Consensus         5 g~~i~i-~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          5 GLLIVL-SGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence            556666 5688999999999998865

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=91.62  E-value=0.16  Score=40.39  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=25.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .++++..|+||||+.-.|......  ..||+.|+
T Consensus       176 ILisGGTGSGKTTlLNal~~~i~~--~eRvItiE  207 (355)
T COG4962         176 ILISGGTGSGKTTLLNALSGFIDS--DERVITIE  207 (355)
T ss_pred             EEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEe
Confidence            445778889999999999988876  44888875

>PRK00023 cmk cytidylate kinase; Provisional

Probab=91.62  E-value=0.26  Score=36.99  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+..+.+..|+||||++..||..+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~   28 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKL   28 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455568899999999999998776

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=91.54  E-value=0.46  Score=35.56  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      |+++++++ ..|+|||.+|..||..+    |..|+..|-=
T Consensus         1 M~v~~i~G-pT~tGKt~~ai~lA~~~----g~pvI~~Dri   35 (233)
T PF01745_consen    1 MKVYLIVG-PTGTGKTALAIALAQKT----GAPVISLDRI   35 (233)
T ss_dssp             -EEEEEE--STTSSHHHHHHHHHHHH------EEEEE-SG
T ss_pred             CcEEEEEC-CCCCChhHHHHHHHHHh----CCCEEEecce
Confidence            45666654 56899999998888766    5578777753

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.53  E-value=0.31  Score=40.41  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=26.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      .++|+|++..   ||||++..++..|.. .|.++.+
T Consensus       110 ~p~vaITGTN---GKTTTTsli~~~l~~-~G~~~~l  141 (448)
T COG0771         110 APIVAITGTN---GKTTTTSLIAHLLKA-AGLDALL  141 (448)
T ss_pred             CCEEEEECCC---chHHHHHHHHHHHHh-cCCCcee
Confidence            6689997655   899999999999999 8887654

>PRK08356 hypothetical protein; Provisional

Probab=91.53  E-value=0.24  Score=36.08  Aligned_cols=26  Identities=27%  Similarity=0.166  Sum_probs=19.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKV   64 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rV   64 (168)
                      +.++++..|+||||+|..|+    + .|..+
T Consensus         7 ~i~~~G~~gsGK~t~a~~l~----~-~g~~~   32 (195)
T PRK08356          7 IVGVVGKIAAGKTTVAKFFE----E-KGFCR   32 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHH----H-CCCcE
Confidence            44568999999999998884    4 46653

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=91.52  E-value=0.23  Score=35.74  Aligned_cols=30  Identities=37%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ...+..|+||||++..|+.     .|.  .+||+|.-
T Consensus         3 ~itG~~gsGKst~~~~l~~-----~g~--~~i~~D~~   32 (179)
T cd02022           3 GLTGGIGSGKSTVAKLLKE-----LGI--PVIDADKI   32 (179)
T ss_pred             EEECCCCCCHHHHHHHHHH-----CCC--CEEecCHH
Confidence            3467899999999887765     354  45788763

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=91.52  E-value=0.39  Score=36.58  Aligned_cols=48  Identities=21%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      ..-+.+ .+..|+|||++...+...++. .|.|++-|+-+--. .+..++.
T Consensus        52 annvLL-~G~rGtGKSSlVkall~~y~~-~GLRlIev~k~~L~-~l~~l~~   99 (249)
T PF05673_consen   52 ANNVLL-WGARGTGKSSLVKALLNEYAD-QGLRLIEVSKEDLG-DLPELLD   99 (249)
T ss_pred             CcceEE-ecCCCCCHHHHHHHHHHHHhh-cCceEEEECHHHhc-cHHHHHH
Confidence            344555 567799999999999999999 99998888776532 5554444

>TIGR03263 guanyl_kin guanylate kinase

Probab=91.49  E-value=0.2  Score=35.79  Aligned_cols=24  Identities=42%  Similarity=0.443  Sum_probs=18.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++|++ .+..|+||||++..|+..+
T Consensus         2 ~ii~l-~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVI-SGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHccC
Confidence            34444 6689999999998888754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PLN02748 tRNA dimethylallyltransferase

Probab=91.49  E-value=0.27  Score=40.99  Aligned_cols=38  Identities=39%  Similarity=0.570  Sum_probs=28.0

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+..++|+| .+..|+|||++|..||..+.      .-+|++|.
T Consensus        18 ~~~~~~~i~i-~GptgsGKs~la~~la~~~~------~eii~~Ds   55 (468)
T PLN02748         18 QKGKAKVVVV-MGPTGSGKSKLAVDLASHFP------VEIINADS   55 (468)
T ss_pred             cCCCCCEEEE-ECCCCCCHHHHHHHHHHhcC------eeEEcCch
Confidence            4555666666 56779999999998887652      46888885

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=91.45  E-value=0.19  Score=39.05  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=18.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .++.+.+|+|||+++..+|..+.
T Consensus        33 ~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        33 LLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            34578889999999999988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family

Probab=91.41  E-value=0.34  Score=43.66  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      +-+..|+|||+++..+...+-...|-+|.+||.+-...
T Consensus       480 I~G~TGSGKS~l~~~li~q~~~~~~~~v~IiD~g~sy~  517 (893)
T TIGR03744       480 ILGPTGAGKSATLTNLLMQVMAVHRPRLFIVEAGNSFG  517 (893)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCCCHH
Confidence            34788999999999998777652478999999987543

Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=91.40  E-value=0.13  Score=45.31  Aligned_cols=51  Identities=27%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC--CCcccccccCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG--PSVPMMMKIDQK   85 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~--~~l~~~~~~~~~   85 (168)
                      ..++.+..|||||-+|..||..|-. .....+=||+..+.  ++++.+.|.++.
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg-~e~aliR~DMSEy~EkHsVSrLIGaPPG  575 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFG-DEQALIRIDMSEYMEKHSVSRLIGAPPG  575 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhcC-CCccceeechHHHHHHHHHHHHhCCCCC
Confidence            5555778899999999999999965 44566667766533  577777776654

>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins

Probab=91.39  E-value=0.6  Score=38.16  Aligned_cols=47  Identities=26%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      ++++.+ .+.+|.||||+|..+-..+.+  ...|++|..-.....+..++
T Consensus        10 G~TLLI-KG~PGTGKTtfaLelL~~l~~--~~~v~YISTRVd~d~vy~~y   56 (484)
T PF07088_consen   10 GQTLLI-KGEPGTGKTTFALELLNSLKD--HGNVMYISTRVDQDTVYEMY   56 (484)
T ss_pred             CcEEEE-ecCCCCCceeeehhhHHHHhc--cCCeEEEEeccCHHHHHHhh
Confidence            666665 889999999999999999876  56899999887776777665

GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding

>PRK10865 protein disaggregation chaperone; Provisional

Probab=91.37  E-value=0.35  Score=43.37  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..++.+..|+|||++|..||..+-. .+...+.+|+...
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~-~~~~~i~id~se~  637 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFD-SDDAMVRIDMSEF  637 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhc-CCCcEEEEEhHHh
Confidence            4445688899999999999998877 7778888988653

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]

Probab=91.35  E-value=0.33  Score=43.83  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++..+++. .-|+||||+-...+..+|. .|+|+++|=
T Consensus        97 g~SFaiiA-PTGvGKTTfg~~~sl~~a~-kgkr~yii~  132 (1187)
T COG1110          97 GKSFAIIA-PTGVGKTTFGLLMSLYLAK-KGKRVYIIV  132 (1187)
T ss_pred             CCceEEEc-CCCCchhHHHHHHHHHHHh-cCCeEEEEe
Confidence            56777754 4589999999999999999 999999883

>PLN02318 phosphoribulokinase/uridine kinase

Probab=91.33  E-value=0.2  Score=42.95  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=26.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .++|.-+.+..|+||||++..|+..+.     .+.+|.+|-.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp-----~vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC-----CcEEEEEcce
Confidence            445555688999999999999986642     3555655543

>COG1160 Predicted GTPases [General function prediction only]

Probab=91.19  E-value=5.9  Score=32.86  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV  111 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  111 (168)
                      ++|+++ ++++|||||+       +-+..|+|+-+|+==|   ++..-      +    ...........+.++..|-+.
T Consensus         4 ~~VAIV-GRPNVGKSTL-------FNRL~g~r~AIV~D~p---GvTRD------r----~y~~~~~~~~~f~lIDTgGl~   62 (444)
T COG1160           4 PVVAIV-GRPNVGKSTL-------FNRLTGRRIAIVSDTP---GVTRD------R----IYGDAEWLGREFILIDTGGLD   62 (444)
T ss_pred             CEEEEE-CCCCCcHHHH-------HHHHhCCeeeEeecCC---CCccC------C----ccceeEEcCceEEEEECCCCC
Confidence            567774 7999999998       4444678888876322   22111      0    111222333445666555333


Q ss_pred             CCCCCcccCchhHHHHHHHHHHhhcCCCCcE--EEEeCCCCCCHHHHHHHhhc
Q 030973          112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDI--LVIDMPPGTGDAQLTTTQTL  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~--IiiD~p~~~~~~~~~~~~~~  162 (168)
                      .....     .......++....+  ++-|.  -++|.-.|+++.--.+++.+
T Consensus        63 ~~~~~-----~l~~~i~~Qa~~Ai--~eADvilfvVD~~~Git~~D~~ia~~L  108 (444)
T COG1160          63 DGDED-----ELQELIREQALIAI--EEADVILFVVDGREGITPADEEIAKIL  108 (444)
T ss_pred             cCCch-----HHHHHHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence            22221     12222333333333  35565  46798888877766555543

>CHL00122 secA preprotein translocase subunit SecA; Validated

Probab=91.11  E-value=0.17  Score=44.87  Aligned_cols=31  Identities=26%  Similarity=0.138  Sum_probs=25.5

Q ss_pred             CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           40 KGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        40 kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +-|+|||.+++-.|+.-|. .|+.|.+|-.+.
T Consensus        97 ~TGEGKTL~a~l~ayl~aL-~G~~VhVvT~Nd  127 (870)
T CHL00122         97 KTGEGKTLVATLPAYLNAL-TGKGVHIVTVND  127 (870)
T ss_pred             cCCCCchHHHHHHHHHHHh-cCCceEEEeCCH
Confidence            6799999877777766666 999999998776

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=91.10  E-value=0.24  Score=40.47  Aligned_cols=28  Identities=29%  Similarity=0.241  Sum_probs=22.1

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .-..+.|+| .+..|+||||++..||..+
T Consensus       216 ~~~~~~IvI-~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        216 PFFVRTVAI-LGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             hCCCcEEEE-EcCCCCCHHHHHHHHHHHh
Confidence            345677777 4677999999999999875

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=91.06  E-value=0.16  Score=35.31  Aligned_cols=19  Identities=42%  Similarity=0.497  Sum_probs=16.7

Q ss_pred             CCCCCChhhHHHHHHHHHH
Q 030973           39 GKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la   57 (168)
                      +.+|+||||+|..||..+.
T Consensus         3 G~PgsGK~t~~~~la~~~~   21 (151)
T PF00406_consen    3 GPPGSGKGTQAKRLAKRYG   21 (151)
T ss_dssp             ESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCChHHHHHHHHHhcC
Confidence            6789999999999998763

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR00152 dephospho-CoA kinase

Probab=91.05  E-value=0.21  Score=36.11  Aligned_cols=31  Identities=39%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+..|+||||++..|+...    |..  ++|+|.-
T Consensus         3 ~itG~~gsGKst~~~~l~~~~----~~~--~i~~D~~   33 (188)
T TIGR00152         3 GLTGGIGSGKSTVANYLADKY----HFP--VIDADKI   33 (188)
T ss_pred             EEECCCCCCHHHHHHHHHHhc----CCe--EEeCCHH
Confidence            346788999999987766532    233  5888874

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=91.04  E-value=0.18  Score=36.05  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=16.1

Q ss_pred             cCCCCCChhhHHHHHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la   57 (168)
                      -+.-||||||++..|+..+.
T Consensus         5 IAtiGCGKTTva~aL~~LFg   24 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFG   24 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcC
Confidence            35679999999999986655

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
3kb1_A	262	Crystal Structure Of The Nucleotide-Binding Protein		4e-26
2ph1_A	262	Crystal Structure Of Nucleotide-Binding Protein Af2		8e-26
3vx3_A	248	Crystal Structure Of [nife] Hydrogenase Maturation		7e-19

>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226 In Complex With Adp From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target Gr157 Length = 262

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
           ++D +   IAV SGKGGVGKST    LAV  A + + KVG+LDAD  GPS+P +  +++ 
Sbjct: 13  RLDKIGFRIAVXSGKGGVGKSTVTALLAVHYAKQGK-KVGILDADFLGPSIPHLFGLEKG 71
Query: 86  PEVTKDMKMVPI--ENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDI 142
                D  + P+  +  G+K  S+ FL+P   +PV+WRGP++   +R+    V WG LD 
Sbjct: 72  KVAVSDEGLEPVLTQRLGIKVXSIQFLLPKRETPVIWRGPLIAGXIREFLGRVAWGELDY 131
Query: 143 LVIDMPPGTGDA 154
           L+ID+PPGTGDA
Sbjct: 132 LLIDLPPGTGDA 143

>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382 From Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr165 Length = 262

Iteration: 1
 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 4/132 (3%)
Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
           ++  +K  IAV SGKGGVGKST    LAV  A + + KVG+LDAD  GPS+P++  +   
Sbjct: 13  RLGKIKSRIAVXSGKGGVGKSTVTALLAVHYARQGK-KVGILDADFLGPSIPILFGLRNA 71
Query: 86  PEVTKDMKMVPI--ENYGVKCMSMGFLVP-SSSPVVWRGPMVMSALRKMSREVDWGNLDI 142
                   + P+  + YG+K  S  FL+P  ++PV+WRGP++   +R+    V WG LD 
Sbjct: 72  RIAVSAEGLEPVLTQKYGIKVXSXQFLLPKENTPVIWRGPLIAGXIREFLGRVAWGELDH 131
Query: 143 LVIDMPPGTGDA 154
           L+ID+PPGTGDA
Sbjct: 132 LLIDLPPGTGDA 143

>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein Hypb From Thermococcus Kodakarensis Kod1 Length = 248

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
           +++GVK +I V SGKGGVGKS  +  LA+ LA K   +VGLLD D +G S  +++  + K
Sbjct: 14  RLEGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGY-RVGLLDLDFHGASDHVILGFEPK 72
Query: 86  PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVI 145
               +D  +VP   +G+K M++ +      P   RG  +  AL ++     W  LD LVI
Sbjct: 73  EFPEEDRGVVPPTVHGIKFMTIAYYT-EDRPTPLRGKEISDALIELLTITRWDELDYLVI 131
Query: 146 DMPPGTGD 153
           DMPPG GD
Sbjct: 132 DMPPGLGD 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	2e-77
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	8e-18
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	1e-16
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	1e-13
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	1e-13
3cwq_A	209	Para family chromosome partitioning protein; alpha	1e-13
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	2e-13
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	2e-13
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	4e-13
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	9e-13
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	1e-11
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	1e-10
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	2e-10
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	2e-10
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	6e-10
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	7e-10
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	2e-07
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	3e-07
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	6e-07
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	1e-06
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	1e-05
3end_A	307	Light-independent protochlorophyllide reductase ir	2e-05
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	3e-05
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	3e-05
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	1e-04
3igf_A	374	ALL4481 protein; two-domained protein consisting o	1e-04
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	2e-04
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	2e-04
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	3e-04
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	3e-04

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Length = 262

 Score =  230 bits (589), Expect = 2e-77
 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 4/145 (2%)

Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85
           ++  +K  IAV SGKGGVGKST    LAV  A +   KVG+LDAD  GPS+P++  +   
Sbjct: 13  RLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQG-KKVGILDADFLGPSIPILFGLRNA 71

Query: 86  PEVTKDMKMVPI--ENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDI 142
                   + P+  + YG+K MSM FL+P  ++PV+WRGP++   +R+    V WG LD 
Sbjct: 72  RIAVSAEGLEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDH 131

Query: 143 LVIDMPPGTGDAQLTTTQTLQLSGI 167
           L+ID+PPGTGDA LT  Q  + +G+
Sbjct: 132 LLIDLPPGTGDAPLTVMQDAKPTGV 156

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373

 Score = 78.0 bits (192), Expect = 8e-18
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 16/133 (12%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP---EVT 89
           V+   S  GGVG ST A   A+A A+  + KV  L+ +  G +  +  + +      +V 
Sbjct: 145 VVIFTSPCGGVGTSTVAAACAIAHANMGK-KVFYLNIEQCG-TTDVFFQAEGNATMSDVI 202

Query: 90  KDMKM------VPIENYGVKCMS-MGFLVPSSSPVVWR--GPMVMSALRKMSREVDWGNL 140
             +K       + +E+   +    + +   +   +         +  L    +     N 
Sbjct: 203 YSLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQG--MDNY 260

Query: 141 DILVIDMPPGTGD 153
           D +++D+P     
Sbjct: 261 DEIIVDLPFSLEI 273

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Length = 245

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 10/126 (7%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--- 89
           V    S KGG G S  A N A AL+ +  + V  +D  +    + M +            
Sbjct: 6   VFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSG-NTHSQDLAD 64

Query: 90  -----KDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILV 144
                  +    ++           L+PS +       +    +  +         D ++
Sbjct: 65  ISNASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYII 123

Query: 145 IDMPPG 150
           +D    
Sbjct: 124 VDFGAS 129

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Length = 260

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          +I V SGKGGVGK+T++  +A  LA K + K  ++D  +
Sbjct: 4  IIVVTSGKGGVGKTTSSAAIATGLAQKGK-KTVVIDFAI 41

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
           I VASGKGG GK+T   NL VALA      V ++DAD+
Sbjct: 4  TITVASGKGGTGKTTITANLGVALAQLGH-DVTIVDADI 41

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          +I VAS KGGVGK+TTAV+L+  LA   Q +  L+D D
Sbjct: 2  IITVASFKGGVGKTTTAVHLSAYLAL--QGETLLIDGD 37

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VI+  + KGG GK+T  +N+A AL+      + ++D D
Sbjct: 3  VISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDTD 39

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Length = 254

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 35/156 (22%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM------------- 80
           +AV +GKGGVGK+T A  L   +AS    K+  +D D     +   +             
Sbjct: 3   LAV-AGKGGVGKTTVAAGLIKIMASDYD-KIYAVDGDP-DSCLGQTLGLSIEEAYAITPL 59

Query: 81  -----KIDQKPEVTKDMKMVPIENY-----------GVKCMSMGFLVPSSSPVVWRGPMV 124
                +I +K      + + P  +             +  + MG +    S    R    
Sbjct: 60  IEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCREN-- 117

Query: 125 MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ 160
            S L  +   +     + +V+DM  G       T +
Sbjct: 118 -SFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAK 152

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71
          +I++ SGKGG GK+T   NL+VAL  + + KV  +D D+
Sbjct: 4  IISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVDGDL 41

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Length = 286

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VI V + KGG GKST AV+L  AL      KV ++D D
Sbjct: 6  VIVVGNEKGGAGKSTIAVHLVTALLYG-GAKVAVIDLD 42

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Length = 267

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          +I +AS KGGVGKST+A+ LA  L+     KV L+D D
Sbjct: 29 IITIASIKGGVGKSTSAIILATLLSKNN--KVLLIDMD 64

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
          VI     KGGVGKS  +   A         KV ++D D
Sbjct: 38 VILNNYFKGGVGKSKLSTMFAYLTDKLNL-KVLMIDKD 74

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Length = 257

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
           IA+A+ KGGVGK+TTA+NLA  LA     +V L+D D
Sbjct: 8  RIALANQKGGVGKTTTAINLAAYLARL-GKRVLLVDLD 44

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Length = 398

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQL-----KVGLLDAD 70
           VI +++ KGGV K+ + V+LA A+ +   L     ++ ++D D
Sbjct: 110 VIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} Length = 361

 Score = 55.6 bits (134), Expect = 6e-10
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70
           I+  + KGGVGK+T + N+A   A +   +V  +D D
Sbjct: 3  TISFFNNKGGVGKTTLSTNVAHYFALQ-GKRVLYVDCD 39

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Length = 403

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQ-----LKVGLLDAD 70
           VI V + KGGV K+ + V LA AL          L++ ++D D
Sbjct: 113 VIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 23/135 (17%)

Query: 27  IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86
           ++   +++ +       GK+  +  LA  +A   Q KV  +DAD+       +  +  + 
Sbjct: 100 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQ-KVLFIDADLRRGYSHNLFTVSNEH 158

Query: 87  ----------EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD 136
                     E+ K ++      + V  ++ G + P+ S       ++M    +M + ++
Sbjct: 159 GLSEYLAGKDELNKVIQHFGKGGFDV--ITRGQVPPNPS------ELLMR--DRMRQLLE 208

Query: 137 W--GNLDILVIDMPP 149
           W   + D++++D PP
Sbjct: 209 WANDHYDLVIVDTPP 223

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Length = 271

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP------ 86
            I + S   G GKST A NLAVA A     K  ++D D+  P+   +  +          
Sbjct: 84  SIVITSEAPGAGKSTIAANLAVAYAQAGY-KTLIVDGDMRKPTQHYIFNLPNNEGLSSLL 142

Query: 87  ----EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW--GNL 140
                    +    IE+  V  ++ G + P+ S       ++ S  R  +   D    N 
Sbjct: 143 LNWSTYQDSIISTEIEDLDV--LTSGPIPPNPS------ELITS--RAFANLYDTLLMNY 192

Query: 141 DILVIDMPP 149
           + ++ID PP
Sbjct: 193 NFVIIDTPP 201

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Length = 286

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 23/129 (17%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP------ 86
           V+ +      +G +    NLA  ++   + +V L+D D+       ++  +         
Sbjct: 94  VLMMTGVSPSIGMTFVCANLAAVISQTNK-RVLLIDCDMRKGYTHELLGTNNVNGLSEIL 152

Query: 87  ----EVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW--GNL 140
               ++T   K   I  + +  +  G + P+ S       ++MS   + +  V+W   N 
Sbjct: 153 IGQGDITTAAKPTSIAKFDL--IPRGQVPPNPS------ELLMS--ERFAELVNWASKNY 202

Query: 141 DILVIDMPP 149
           D+++ID PP
Sbjct: 203 DLVLIDTPP 211

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKVGLL--D-----ADVYGPSVPMM----------- 79
            GKGGVGK+TT+ +LA+ LA   +  V LL  D     +D +                  
Sbjct: 22  GGKGGVGKTTTSCSLAIQLAKV-RRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLY 80

Query: 80  -MKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG 138
            M+ID    + +D+      +       +G +   +  +   G     +  ++ ++V+  
Sbjct: 81  AMEIDPNGSM-QDLLAGQTGDGDAGMGGVGVMQDLAYAIP--GIDEAMSFAEVLKQVNSL 137

Query: 139 NLDILVIDMPPGTGDA 154
           + + +V D  P TG  
Sbjct: 138 SYETIVFDTAP-TGHT 152

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Length = 349

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 25/138 (18%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKVGLL--D-----ADVYGPSVP------------M 78
            GKGGVGK+T +    V LA K  LKV ++  D      D++                  
Sbjct: 32  GGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDPAHSLRDIFEQEFGHEPTKVKGYDNLY 90

Query: 79  MMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMV--MSALRKMSREVD 136
           +++ID  P+   +     ++    +   +G ++     +    P     +A     + +D
Sbjct: 91  VVEID--PQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMD 148

Query: 137 WGNLDILVIDMPPGTGDA 154
               D+++ D  P TG  
Sbjct: 149 SNEFDVVIFDTAP-TGHT 165

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKVGLL--D-----ADVYGPSVP------------M 78
           +GKGGVGK++ +   A+ LA +   +V L+  D       V+  ++              
Sbjct: 14  TGKGGVGKTSISCATAIRLAEQ-GKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLS 72

Query: 79  MMKIDQKPEVTKDMKMV--PIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD 136
            ++ID +    +    +  PI+      +        S                ++    
Sbjct: 73  ALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL 132

Query: 137 WGNLDILVIDMPPGTGDA 154
               D ++ D  P TG  
Sbjct: 133 LTRFDHIIFDTAP-TGHT 149

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Length = 289

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 39 GKGGVGKSTTAVNLAVALASK 59
          GKGG+GKSTT  NL  ALA  
Sbjct: 9  GKGGIGKSTTTQNLVAALAEM 29

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Length = 354

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 10/21 (47%), Positives = 17/21 (80%)

Query: 38 SGKGGVGKSTTAVNLAVALAS 58
           GKGGVGK+T++ ++A+ +A 
Sbjct: 24 GGKGGVGKTTSSCSIAIQMAL 44

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Length = 374

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 18/133 (13%)

Query: 38  SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP-EVTKDMKMVP 96
            GK GV ++  A+  A  LAS+   +V L         + +   +   P ++  ++++V 
Sbjct: 8   LGKSGVARTKIAIAAAKLLASQ-GKRVLLAGLAEPVLPLLLEQTLTPDPQQIAPNLEVVQ 66

Query: 97  I------ENY--GVKCMSMGFLVPSSSPVVWRGPMV-------MSALRKMSREVDWGNLD 141
                  E     VK +   +L       V+   +V         AL  +      G  D
Sbjct: 67  FQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYD 126

Query: 142 ILVIDMPPGTGDA 154
            +V D        
Sbjct: 127 TIVYDGTG-DAFT 138

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 38 SGKGGVGKSTTAVNLAVALAS 58
           GKGGVGK+TT+ ++AV LA 
Sbjct: 24 GGKGGVGKTTTSSSVAVQLAL 44

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 38 SGKGGVGKSTTAVNLAVALASK 59
           GKGGVGK+TT+ +LA+ ++  
Sbjct: 25 GGKGGVGKTTTSCSLAIQMSKV 46

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 324

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL--D-----ADVYGPSVP--------- 77
                GKGGVGK+T +   A+ +A     K  ++  D     +D     +          
Sbjct: 16  FVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTDPAHSLSDSLEREIGHTPTKITEN 74

Query: 78  -MMMKIDQKPEVTKDMKMV-----PIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKM 131
              ++ID +  + +    +          G+  +     + S SP    G    +A  + 
Sbjct: 75  LYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSP----GIDEAAAFDQF 130

Query: 132 SREVDWGNLDILVIDMPPGTGDA 154
            R +     DI++ D  P TG  
Sbjct: 131 LRYMTTDEYDIVIFDTAP-TGHT 152

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Length = 269

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 39 GKGGVGKSTTAVNLAVALA 57
          GKGG+GKSTT  NL   L 
Sbjct: 8  GKGGIGKSTTTQNLTSGLH 26

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.95
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.95
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.94
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.93
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.91
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.9
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.9
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.89
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.89
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.88
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.88
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.88
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.88
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.87
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.87
3end_A	307	Light-independent protochlorophyllide reductase ir	99.87
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.86
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.86
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	99.86
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.86
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.86
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.86
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.84
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	99.83
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	99.82
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	99.81
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	99.8
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.79
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	99.73
3igf_A	374	ALL4481 protein; two-domained protein consisting o	99.7
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.68
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.65
2xxa_A	433	Signal recognition particle protein; protein trans	99.61
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.55
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.54
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.43
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.42
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.35
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.19
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.16
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	99.07
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	99.02
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.93
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	98.8
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	98.71
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.71
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	98.7
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.37
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	98.23
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.22
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.14
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.0
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.88
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.82
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.78
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.76
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.68
3io5_A	333	Recombination and repair protein; storage dimer, i	97.61
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.58
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.57
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.51
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.45
2og2_A	359	Putative signal recognition particle receptor; nuc	97.38
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.36
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.35
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.34
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.27
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.21
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.19
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.17
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.16
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.14
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.13
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.1
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.07
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.99
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.96
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.87
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.83
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.83
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.81
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.79
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.78
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.77
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.75
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.74
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.74
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.7
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.69
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.67
3bos_A	242	Putative DNA replication factor; P-loop containing	96.66
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.65
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.64
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.61
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.59
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.59
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.58
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.51
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.49
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.42
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.4
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	96.4
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.39
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.38
2qgz_A	308	Helicase loader, putative primosome component; str	96.35
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.32
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.22
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.19
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	96.19
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.17
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.17
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.17
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.1
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.09
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.07
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.06
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.04
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.01
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.98
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.92
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.91
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.86
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.85
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.85
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.82
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.79
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.67
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.63
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.61
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.58
2obn_A	349	Hypothetical protein; structural genomics, joint c	95.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.57
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.55
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.53
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.51
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.49
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.46
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.4
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.39
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.38
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.29
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.27
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.23
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.2
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.18
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.17
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.15
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.15
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	95.11
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.06
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.0
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.99
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.98
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.97
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.94
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.91
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.9
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.89
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.86
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.85
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.8
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.77
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.75
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.75
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.7
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.69
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.65
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.61
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.61
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.61
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.6
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.57
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.57
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.56
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.56
2g0t_A	350	Conserved hypothetical protein; structural genomic	94.55
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.52
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.5
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.48
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.45
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.43
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.36
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.33
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.31
1via_A	175	Shikimate kinase; structural genomics, transferase	94.31
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.3
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.24
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.22
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.18
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.14
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.11
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.03
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.97
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.95
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.89
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.85
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.84
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	93.84
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	93.78
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.78
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.73
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.7
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	93.68
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.65
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.63
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.6
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.57
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	93.48
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.43
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	93.41
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	93.38
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.31
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.3
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.3
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	93.3
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.26
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	93.26
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.19
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	93.1
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.0
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	92.91
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.88
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.86
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	92.82
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.81
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.74
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	92.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	92.7
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.68
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	92.67
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	92.65
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.64
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	92.61
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	92.41
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	92.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.39
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	92.31
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	92.25
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	92.16
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	92.15
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.11
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	91.95
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	91.94
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.93
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	91.92
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	91.91
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	91.84
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.82
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	91.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	91.58
2fna_A	357	Conserved hypothetical protein; structural genomic	91.55
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	91.5
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	91.5
4dqx_A	277	Probable oxidoreductase protein; structural genomi	91.5
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.48
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.39
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	91.37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	91.3
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.28
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.22
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	91.16
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.14
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.1
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	91.09
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	90.98
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	90.88
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	90.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	90.65
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	90.65
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.6
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.56
3ice_A	422	Transcription termination factor RHO; transcriptio	90.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	90.49
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	90.42
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	90.41
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	90.14
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	90.09
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.09
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	90.08
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	89.99
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	89.92
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	89.88
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	89.8
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	89.75
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	89.7
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	89.62
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	89.58
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	89.53
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.52
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	89.43
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	89.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.39
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	89.37
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	89.3
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	89.29
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	89.28
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	89.27
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	89.26
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	89.19
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	89.19
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	89.17
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	89.11
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	89.02
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	88.97
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	88.97
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	88.96
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	88.93
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	88.89
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	88.84
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	88.83
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	88.83
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	88.71
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	88.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	88.6
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	88.58
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	88.56
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	88.54
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	88.52
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	88.5
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	88.49
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	88.48
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	88.48
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	88.47
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	88.39
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	88.33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	88.3
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	88.3
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	88.27
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	88.22
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	88.14
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.13
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	88.01
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	87.88
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	87.84
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	87.73
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	87.71
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	87.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	87.69
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	87.67
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	87.66
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	87.65
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	87.65
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	87.64
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	87.63
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.62
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	87.61
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.59
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.59
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	87.56
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	87.51
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.45
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.45
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	87.42
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	87.38
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	87.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	87.34
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	87.3
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	87.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	87.27
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	87.26
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	87.23
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	87.2
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	87.13
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	87.13
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	87.1
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	87.09
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	87.08
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	87.08
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	87.07
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	87.01
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	87.0
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	87.0
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	86.94
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	86.94
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.87
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	86.85
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	86.72
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	86.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	86.71
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	86.7
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	86.67
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	86.66
2chq_A	319	Replication factor C small subunit; DNA-binding pr	86.64
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.62
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	86.6
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.6
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	86.54
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.49
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	86.48
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	86.47
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	86.45
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	86.43
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	86.41
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.4
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	86.4
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	86.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.34
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	86.33
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	86.24
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.23
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	86.19
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	86.13
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	86.13
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	86.1
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	86.04
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	86.03
2l8b_A	189	Protein TRAI, DNA helicase I; RECD, hydrolase; NMR	86.03
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	86.01
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	85.92
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.87
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	85.87
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	85.86
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	85.86
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	85.85
3rih_A	293	Short chain dehydrogenase or reductase; structural	85.85
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	85.79
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	85.76
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	85.74
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.69
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	85.66
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	85.65
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	85.63
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	85.63
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	85.6
3rsc_A	415	CALG2; TDP, enediyne, structural genomics, PSI-2,	85.5
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	85.5
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	85.49
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	85.46
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	85.45
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	85.44
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	85.38
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	85.36
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	85.32
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	85.29
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	85.28
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	85.27
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	85.23
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	85.23
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	85.22
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	85.21
3pvs_A	447	Replication-associated recombination protein A; ma	85.2
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	85.16
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	85.11
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.09
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	85.08
3b6e_A	216	Interferon-induced helicase C domain-containing P;	85.06
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	85.06
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	85.05
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	85.04
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	85.03
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	85.03
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	85.03
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	85.01
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	84.99
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.99
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	84.96
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	84.91
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	84.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	84.8
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	84.79
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	84.73
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	84.72
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	84.72
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	84.68
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	84.67
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	84.66
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	84.62
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	84.59
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	84.58
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	84.55
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	84.52
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	84.52
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	84.46
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	84.42
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	84.39
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	84.38
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	84.38

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.95  E-value=5.9e-29  Score=191.41  Aligned_cols=139  Identities=15%  Similarity=0.219  Sum_probs=114.6

Q ss_pred             ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973            4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus         4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      ..++.|.+|.+|+++.+...+    +..++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|++.++++.+|+..
T Consensus        69 ~~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~  143 (286)
T 3la6_A           69 TDLAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTN  143 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHHSTT----TTCCEEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTTTCCHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHhCCC
Confidence            345679999999999997743    448999999999999999999999999999 999999999999999999999998


Q ss_pred             CCCCccc--------cCceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973           84 QKPEVTK--------DMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD  153 (168)
Q Consensus        84 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~  153 (168)
                      ...++.+        .+.+.+....++++++.+..++.+..     ......+.++++.++ ++||+|||||||.+..
T Consensus       144 ~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~  215 (286)
T 3la6_A          144 NVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSE-----LLMSERFAELVNWAS-KNYDLVLIDTPPILAV  215 (286)
T ss_dssp             CTTCHHHHHHTSSCTTTTCEECSSTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTTC
T ss_pred             CCCCHHHHccCCCCHHHheeccCCCCEEEEeCCCCCCCHHH-----HhchHHHHHHHHHHH-hCCCEEEEcCCCCcch
Confidence            8877654        23345555678999998865443322     234578899999998 8999999999998643

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.95  E-value=1.7e-28  Score=187.51  Aligned_cols=138  Identities=24%  Similarity=0.351  Sum_probs=111.6

Q ss_pred             ceeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973            4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus         4 ~~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      ..++.|.+|.+|+++.+...+    +.+++|+|+|.|||+||||+|+|||..+|+ .|+|||+||+|+++|+++..|+..
T Consensus        59 ~~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~  133 (271)
T 3bfv_A           59 KSPISEKFRGIRSNIMFANPD----SAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMRKPTQHYIFNLP  133 (271)
T ss_dssp             TSHHHHHHHHHHHHHHHSSTT----CCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSSCCHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCccHHHHcCCC
Confidence            345679999999999998743    448999999999999999999999999999 999999999999999999999988


Q ss_pred             CCCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973           84 QKPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus        84 ~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      ...++.+.        +.+.+....+++++|.+..++.+..     ......+.++++.++ ++||+|||||||.+.
T Consensus       134 ~~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~  204 (271)
T 3bfv_A          134 NNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSE-----LITSRAFANLYDTLL-MNYNFVIIDTPPVNT  204 (271)
T ss_dssp             CSSSHHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTT
T ss_pred             CCCCHHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCCHHH-----HhChHHHHHHHHHHH-hCCCEEEEeCCCCch
Confidence            77666541        2233444578999998755433221     223467888999988 899999999999763

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.94  E-value=8.5e-28  Score=186.01  Aligned_cols=137  Identities=15%  Similarity=0.269  Sum_probs=110.8

Q ss_pred             eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      .++.|.+|.+|+++.+...    ++.+++|+|+|.|||+||||+|+|||..||+ .|+|||+||+|+++++++..|+...
T Consensus        82 ~~~~Ea~r~lrt~l~~~~~----~~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~r~~~l~~~~~~~~  156 (299)
T 3cio_A           82 DSAVEAVRALRTSLHFAMM----ETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSN  156 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHTS----SCSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHhcc----CCCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCCCCccHHHHcCCCC
Confidence            4556999999999998763    3347999999999999999999999999999 9999999999999999999999888


Q ss_pred             CCCcccc--------CceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973           85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus        85 ~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      ..++.+.        +.+.+....+++++|.+..++.+..     ......+.++++.++ ++||+|||||||.+.
T Consensus       157 ~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~e-----ll~~~~l~~ll~~l~-~~yD~VIIDtpp~~~  226 (299)
T 3cio_A          157 EHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSE-----LLMRDRMRQLLEWAN-DHYDLVIVDTPPMLA  226 (299)
T ss_dssp             SSSHHHHHTTSSCHHHHCEEETTTTEEEECCCSCCSCHHH-----HHTSHHHHHHHHHHH-HHCSEEEEECCCTTT
T ss_pred             CCCHHHHCcCCCCHHHhhhccCCCCEEEEECCCCCCCHHH-----HhCHHHHHHHHHHHH-hCCCEEEEcCCCCch
Confidence            7766542        2234444578999998755433221     233467888999888 899999999999864

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.93  E-value=6.2e-26  Score=172.25  Aligned_cols=133  Identities=47%  Similarity=0.843  Sum_probs=99.0

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeec--ccCCeee
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI--ENYGVKC  104 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  104 (168)
                      +.+.+++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+++++++..|+......+.....+.+.  ...++++
T Consensus        14 l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v   92 (262)
T 2ph1_A           14 LGKIKSRIAVMSGKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKV   92 (262)
T ss_dssp             HTTCSCEEEEECSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEE
T ss_pred             hccCCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEE
Confidence            45568999999999999999999999999999 99999999999999899999988755422222222222  3467889


Q ss_pred             eecCccCCCCCC-cccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          105 MSMGFLVPSSSP-VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       105 l~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      +|.+........ ..+........+.++++.++++.||||||||||++++..+....
T Consensus        93 lp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~  149 (262)
T 2ph1_A           93 MSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQ  149 (262)
T ss_dssp             ECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHH
T ss_pred             EeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHh
Confidence            988755433222 12233445677888888775468999999999999876554433

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.91  E-value=1.5e-24  Score=162.32  Aligned_cols=125  Identities=16%  Similarity=0.147  Sum_probs=94.0

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCccccc-ccCCCCCcccc------------Cce
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMM-KIDQKPEVTKD------------MKM   94 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~-~~~~~~~~~~~------------~~~   94 (168)
                      +++++|+|+|+|||+||||+|+|||..||+ . |+||++||+|++.++++..| +..+..++.+.            ..+
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   80 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQ-EPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM   80 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTT-STTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHh-CcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHH
Confidence            348999999999999999999999999999 8 99999999999988999998 45555554431            112


Q ss_pred             eecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973           95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus        95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ......+++++|.+.....      ........+.++++.++ +.||||||||||+++.....++..
T Consensus        81 ~~~~~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~  140 (245)
T 3ea0_A           81 VQHISPSLDLIPSPATFEK------IVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWVLEH  140 (245)
T ss_dssp             SEEEETTEEEECCCSSHHH------HHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHHGGG
T ss_pred             hEecCCCeEEEcCCCChHh------hhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHHHHH
Confidence            2334578888876522110      00123467888888888 899999999999998776665543

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.90  E-value=1.8e-24  Score=171.29  Aligned_cols=129  Identities=19%  Similarity=0.225  Sum_probs=89.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-------------------CCcccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-------------------PEVTKD   91 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-------------------~~~~~~   91 (168)
                      ||+|+|+|+|||+||||+|+|||+.||+ .|+|||+||+|++++....+++....                   .++.+.
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~   79 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAI   79 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGG
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHH
Confidence            6899999999999999999999999999 99999999999998777666543210                   122221


Q ss_pred             --------------CceeecccCCeeeeecCccCCCCCCcccC-----------chhHHHHHHHHHHhhcCC--CCcEEE
Q 030973           92 --------------MKMVPIENYGVKCMSMGFLVPSSSPVVWR-----------GPMVMSALRKMSREVDWG--NLDILV  144 (168)
Q Consensus        92 --------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~~l~~~--~yD~Ii  144 (168)
                                    ..+......+++++|.+............           .......+.++++.++ +  .|||||
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~~~yD~VI  158 (361)
T 3pg5_A           80 FVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAME-RDDRYDVIF  158 (361)
T ss_dssp             GHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHH-HTTCCSEEE
T ss_pred             HHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHh-hccCCCEEE
Confidence                          12333344588888876433221110000           0000134788888887 5  999999


Q ss_pred             EeCCCCCCHHHHHHHhh
Q 030973          145 IDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       145 iD~p~~~~~~~~~~~~~  161 (168)
                      |||||+++.....++..
T Consensus       159 ID~pP~l~~~~~~aL~~  175 (361)
T 3pg5_A          159 FDVGPSLGPFNRTVLLG  175 (361)
T ss_dssp             EECCSCCSHHHHHHHTT
T ss_pred             EECCCCcCHHHHHHHHH
Confidence            99999998877766543

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.90  E-value=3.4e-23  Score=156.17  Aligned_cols=121  Identities=19%  Similarity=0.325  Sum_probs=93.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC--Ccccc--------Cceee-ccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IEN   99 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~~   99 (168)
                      +++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+++++++.+|+.....  ++.+.        ..+.. ...
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   80 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT   80 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence            6899999999999999999999999999 999999999999888999999876542  22220        11122 234


Q ss_pred             CCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCC-CCcEEEEeCCCCCCHHHHHHHh
Q 030973          100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      .+++++|.+....       ........+.++++.++ + .||||||||||+++.....++.
T Consensus        81 ~~l~~lp~~~~~~-------~~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~l~  134 (260)
T 3q9l_A           81 ENLYILPASQTRD-------KDALTREGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALY  134 (260)
T ss_dssp             TTEEEECCCSCCC-------TTSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHHHH
T ss_pred             CCEEEecCCCccc-------hhhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHHHH
Confidence            6889998764321       11234567888888888 7 9999999999999887666655

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.89  E-value=6.8e-23  Score=152.70  Aligned_cols=121  Identities=21%  Similarity=0.301  Sum_probs=90.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc--------CceeecccCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD--------MKMVPIENYG  101 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~--------~~~~~~~~~~  101 (168)
                      +++|+|+|.|||+||||+|+|||..|++ .|+||++||+|+++++++.+|+.... .++.+.        ..+.+....+
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~   80 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN   80 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence            6899999999999999999999999999 99999999999998999999998776 444331        1122222367


Q ss_pred             eeeeecCccCCCCCCcccCchhH-HHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          102 VKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      ++++|...    ...  .. ... ...+.++++.++ +.||||||||||+++.....++.
T Consensus        81 l~~lp~~~----~~~--~~-~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~  132 (237)
T 1g3q_A           81 VYVLPGAV----DWE--HV-LKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSAML  132 (237)
T ss_dssp             EEEECCCC----SHH--HH-HHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHHHT
T ss_pred             EEEEeCCC----ccc--hh-hhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHHHH
Confidence            77777221    000  00 111 356788888888 89999999999999877666554

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.89  E-value=1.2e-22  Score=153.70  Aligned_cols=121  Identities=27%  Similarity=0.363  Sum_probs=91.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC-CCcccc-------CceeecccCCe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------MKMVPIENYGV  102 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~~~  102 (168)
                      +++|+|+|+|||+||||+|+|||..|++ .|+||++||+|++.++++.+|+.... .++.+.       .........++
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l   80 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGV   80 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGC
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCe
Confidence            6899999999999999999999999999 99999999999988899999998776 444331       11111223678


Q ss_pred             eeeecCccCCCCCCcccCchhH-HHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          103 KCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       103 ~~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      +++|...    ..  .. .... ...+.++++.++ +.||||||||||+++.....++.
T Consensus        81 ~~lp~~~----~~--~~-~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~  131 (263)
T 1hyq_A           81 KVVPAGV----SL--EG-LRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIAIA  131 (263)
T ss_dssp             EEEECCS----CH--HH-HHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHHHH
T ss_pred             EEEcCCC----Cc--Ch-hhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHHHH
Confidence            8887321    10  00 1122 567888888888 89999999999999877665554

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.88  E-value=4.6e-23  Score=156.53  Aligned_cols=129  Identities=22%  Similarity=0.148  Sum_probs=89.2

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC-------CCCccc-------cCc
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-------KPEVTK-------DMK   93 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~-------~~~~~~-------~~~   93 (168)
                      .+++++|+|+|+|||+||||+|+|||..|+  .|+||++||+|++++....++....       ..++.+       ...
T Consensus        24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  101 (267)
T 3k9g_A           24 NKKPKIITIASIKGGVGKSTSAIILATLLS--KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDS  101 (267)
T ss_dssp             --CCEEEEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGG
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHH
Confidence            345899999999999999999999999999  5999999999998855444432211       122211       111


Q ss_pred             eeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973           94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus        94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      .......+++++|.+...........  ......+.++++.++ +.||||||||||+++.....++..
T Consensus       102 ~i~~~~~~l~~lp~~~~~~~~~~~~~--~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~l~~  166 (267)
T 3k9g_A          102 TIINVDNNLDLIPSYLTLHNFSEDKI--EHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNALLC  166 (267)
T ss_dssp             GCEEEETTEEEECCCGGGGGTTTCCC--TTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHHHTT
T ss_pred             hhccCCCCEEEEeCChHHHHHHHhhh--hhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHHHHH
Confidence            22223378999988754332222111  113467888899988 899999999999998877766543

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.88  E-value=8.1e-23  Score=153.02  Aligned_cols=120  Identities=23%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCC--------cccc-------------
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--------VTKD-------------   91 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~--------~~~~-------------   91 (168)
                      .|+| |+|||+||||+|+|||..||+ .|+||++||+|++ ++++..|+......        +.+.             
T Consensus         2 kI~v-s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (254)
T 3kjh_A            2 KLAV-AGKGGVGKTTVAAGLIKIMAS-DYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL   78 (254)
T ss_dssp             EEEE-ECSSSHHHHHHHHHHHHHHTT-TCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred             EEEE-ecCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence            3788 899999999999999999999 9999999999997 89999998765431        1110             


Q ss_pred             -------CceeecccCCeee-eecCccCCCCCCcccCchhHHHHHHHHHHhh-cCCCCcEEEEeCCCCCCHHHHHHH
Q 030973           92 -------MKMVPIENYGVKC-MSMGFLVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTT  159 (168)
Q Consensus        92 -------~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~~~~yD~IiiD~p~~~~~~~~~~~  159 (168)
                             .........++++ ++.+...+......   ......+.++++.+ + ++||||||||||+++.....++
T Consensus        79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~~~~~~l  151 (254)
T 3kjh_A           79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY---CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEHLTRGTA  151 (254)
T ss_dssp             SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC---HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTTCCHHHH
T ss_pred             CCchhccHHhcccccCCeEEEEEecccccCCCCCC---cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccHHHHHHH
Confidence                   0000111234455 55443322222211   11225688888888 7 8999999999999876555444

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.88  E-value=3.4e-22  Score=145.74  Aligned_cols=97  Identities=20%  Similarity=0.209  Sum_probs=77.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      |++|+|+|+|||+||||+|.|||..|++ .|+||++||+|++. ++...++...               .++++++.+. 
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~-~~~~~~~~~~---------------~~~~~~~~~~-   62 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQM-SLTNWSKAGK---------------AAFDVFTAAS-   62 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHHTTSC---------------CSSEEEECCS-
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCC-CHHHHHhcCC---------------CCCcEEecCc-
Confidence            6899999999999999999999999999 99999999999977 5555554221               2255565431 


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                                     ..+.++++.++ ++||||||||||+++.....++..
T Consensus        63 ---------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~l~~   97 (206)
T 4dzz_A           63 ---------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAAVMV   97 (206)
T ss_dssp             ---------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHHHHH
Confidence                           56778888888 889999999999998776666544

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.88  E-value=2.3e-22  Score=159.81  Aligned_cols=126  Identities=18%  Similarity=0.227  Sum_probs=94.5

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc---------------C
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---------------M   92 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~---------------~   92 (168)
                      .+.+++|+|+|+|||+||||+|+|||..||+ .|+||++||+| ..++++.+|+..+..++.+.               .
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~-~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~  217 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN-MGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE  217 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH-HTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence            4568999999999999999999999999999 99999999999 77799999999888766542               1


Q ss_pred             ceeecccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhc-CCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973           93 KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus        93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ........+++++|.+.......      ......+.++++.++ +..||+|||||||+++...+.++..
T Consensus       218 ~~i~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l~~  281 (373)
T 3fkq_A          218 SCIKQSQEGVSYFSSTKVALDIL------EISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSK  281 (373)
T ss_dssp             HTCEECTTSCEECCCCSSGGGGG------GCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHHTT
T ss_pred             HHhhcCCCCEEEecCCCChHhHH------hCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHH
Confidence            11222236788887653221111      123455666666554 2589999999999999887777654

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.87  E-value=1.1e-22  Score=163.17  Aligned_cols=131  Identities=22%  Similarity=0.191  Sum_probs=79.6

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHH------HhCCCeEEEEeCCCCCCCcccccccCCCCCccc----------
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALA------SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK----------   90 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la------~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~----------   90 (168)
                      ..+.+++|+|+|+|||+||||+|+|||..||      + .|+|||+||+|+++ +++.+|+.....+...          
T Consensus       107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~-~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~  184 (403)
T 3ez9_A          107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLR-HDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNN  184 (403)
T ss_dssp             HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGG-GCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHT
T ss_pred             CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhc-CCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhc
Confidence            3456999999999999999999999999999      6 79999999999976 8888898765322100          


Q ss_pred             -------cCceeecccCCeeeeecCccCCCCCCc-------cc-CchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHH
Q 030973           91 -------DMKMVPIENYGVKCMSMGFLVPSSSPV-------VW-RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ  155 (168)
Q Consensus        91 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~-~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~  155 (168)
                             ...+.+....+++++|.+.........       .+ ........++++++.++ ++||||||||||+++..+
T Consensus       185 ~~~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~  263 (403)
T 3ez9_A          185 LDAETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFL  263 (403)
T ss_dssp             CCHHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHH
T ss_pred             ccccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHH
Confidence                   123344455789999876431000000       00 00001123456777777 899999999999998777


Q ss_pred             HHHHh
Q 030973          156 LTTTQ  160 (168)
Q Consensus       156 ~~~~~  160 (168)
                      ..++.
T Consensus       264 ~~al~  268 (403)
T 3ez9_A          264 LNGLA  268 (403)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.87  E-value=1.3e-22  Score=162.37  Aligned_cols=132  Identities=18%  Similarity=0.170  Sum_probs=90.9

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCCCCCcccccccCCCC-----Cccc------
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYGPSVPMMMKIDQKP-----EVTK------   90 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~~~~l~~~~~~~~~~-----~~~~------   90 (168)
                      ....+++|+|+|+|||+||||+|+|||..||.     ..|+|||+||+|+++ +++.+|+.....     ++.+      
T Consensus       104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~  182 (398)
T 3ez2_A          104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNV  182 (398)
T ss_dssp             TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred             CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhc
Confidence            35568999999999999999999999999994     169999999999975 788888765421     1111      


Q ss_pred             ------cCceeecccCCeeeeecCccCCC---CCCc----c-cCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHH
Q 030973           91 ------DMKMVPIENYGVKCMSMGFLVPS---SSPV----V-WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL  156 (168)
Q Consensus        91 ------~~~~~~~~~~~~~~l~~~~~~~~---~~~~----~-~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~  156 (168)
                            ...+.+....+++++|.+.....   ....    . .........+.++++.++ ++||||||||||+++....
T Consensus       183 ~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~  261 (398)
T 3ez2_A          183 SREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLK  261 (398)
T ss_dssp             CHHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHH
T ss_pred             cccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHH
Confidence                  11234445578999987633100   0000    0 000011124467777888 8999999999999988877


Q ss_pred             HHHh
Q 030973          157 TTTQ  160 (168)
Q Consensus       157 ~~~~  160 (168)
                      +++.
T Consensus       262 ~~l~  265 (398)
T 3ez2_A          262 NALA  265 (398)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6665

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.86  E-value=1.3e-22  Score=153.53  Aligned_cols=121  Identities=28%  Similarity=0.321  Sum_probs=83.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc-------CceeecccCCe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------MKMVPIENYGV  102 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~  102 (168)
                      .+++|+|+|+|||+||||+|+|||..|++ .|+|||+||+|+++ ++...|+.....++.+.       ..+.+  ..++
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l   80 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF   80 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence            48999999999999999999999999999 99999999999975 67888887665444321       11111  4678


Q ss_pred             eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973          103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus       103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                      +++|.+.............   ...+.++++.   +.||||||||||+++.....++.
T Consensus        81 ~vlp~~~~~~~~~~~l~~~---~~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~l~  132 (257)
T 1wcv_1           81 HLLPATPDLVGATVELAGA---PTALREALRD---EGYDLVLLDAPPSLSPLTLNALA  132 (257)
T ss_dssp             EEECCCTTHHHHHHHHTTC---TTHHHHHCCC---TTCSEEEEECCSSCCHHHHHHHH
T ss_pred             EEEeCChhHHHHHHHHhhH---HHHHHHHhcc---cCCCEEEEeCCCCCCHHHHHHHH
Confidence            8887652111000000000   0344454443   57999999999999877655543

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.86  E-value=9.9e-22  Score=152.84  Aligned_cols=121  Identities=22%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc------------cCceee
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVP   96 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~------------~~~~~~   96 (168)
                      ...|+|+|+ +||||||||+|+|||.+||+ .|+||++||+|++.++...+++.........            ......
T Consensus        46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~-~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~  123 (314)
T 3fwy_A           46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF  123 (314)
T ss_dssp             -CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred             CCceEEEEE-CCCccCHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhee
Confidence            458999997 79999999999999999999 9999999999999877665544332221110            112233


Q ss_pred             cccCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973           97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA  154 (168)
Q Consensus        97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~  154 (168)
                      ....++.+++.+..   .....+........+..+.+...++.||||++|||++....
T Consensus       124 ~~~~~i~~v~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~  178 (314)
T 3fwy_A          124 EGFNGVMCVEAGGP---PAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCG  178 (314)
T ss_dssp             ECGGGCEEEECCCC---CTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCG
T ss_pred             ecCCCeEEEeCCCC---cccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhh
Confidence            44567888887632   23333333444455555554322378999999999986443

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=99.86  E-value=6.1e-23  Score=161.85  Aligned_cols=75  Identities=24%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             eeeeeecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         5 ~~~~e~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      +++.|.+|.+|+++.+...+    +.+++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|+ +++++..|+...
T Consensus         3 s~~~E~~r~lrt~~~~~~~~----~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~   76 (349)
T 3ug7_A            3 SKIKDSINSLRGITEKKLEK----KDGTKYIMFGGKGGVGKTTMSAATGVYLAE-KGLKVVIVSTDP-AHSLRDIFEQEF   76 (349)
T ss_dssp             -------CTTHHHHHHHHHS----SCSCEEEEEECSSSTTHHHHHHHHHHHHHH-SSCCEEEEECCT-TCHHHHHHCSCC
T ss_pred             HHHHHHHHHHhhhHHHhhcc----cCCCEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCC-CCCHHHHhCCCC
Confidence            46889999999999987743    448999999999999999999999999999 999999999999 569999999865


Q ss_pred             C
Q 030973           85 K   85 (168)
Q Consensus        85 ~   85 (168)
                      .
T Consensus        77 ~   77 (349)
T 3ug7_A           77 G   77 (349)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.86  E-value=5.7e-22  Score=150.43  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=79.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc----------CceeecccC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD----------MKMVPIENY  100 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~  100 (168)
                      |++|+| ++|||+||||+|+|||..|++ .|+||++||+|++++.+..+++.....++.+.          .........
T Consensus         1 M~vI~v-s~KGGvGKTT~a~nLA~~la~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~   78 (269)
T 1cp2_A            1 MRQVAI-YGKGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYG   78 (269)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGG
T ss_pred             CcEEEE-ecCCCCcHHHHHHHHHHHHHH-CCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCC
Confidence            578999 689999999999999999999 99999999999999888887776655544331          111123356


Q ss_pred             CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      +++++|.+...... .....+......+.+.++.++ ++||||||||||.+.
T Consensus        79 ~l~vl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~  128 (269)
T 1cp2_A           79 GIRCVESGGPEPGV-GCAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVV  128 (269)
T ss_dssp             GCEEEECCCCCTTS-SCHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSC
T ss_pred             CeeEEeCCCchhhc-cccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhh
Confidence            88899876432211 100010011112223334445 789999999999764

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.86  E-value=7.6e-22  Score=151.52  Aligned_cols=118  Identities=25%  Similarity=0.325  Sum_probs=78.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc------------Cceeecc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIE   98 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~   98 (168)
                      |++|+| ++|||+||||+|+|||..||+ .|+||++||+|++++.+..+++.....++.+.            .......
T Consensus         2 MkvIav-s~KGGvGKTT~a~nLA~~La~-~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~   79 (289)
T 2afh_E            2 MRQCAI-YGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAG   79 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEEC
T ss_pred             ceEEEE-eCCCcCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccC
Confidence            789999 689999999999999999999 99999999999999888887766554443221            1111233


Q ss_pred             cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973           99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      ..+++++|.+....... ....+......+.+.++.++ ++||||||||||.+.
T Consensus        80 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~-~~yD~ViID~~~~~~  131 (289)
T 2afh_E           80 YGGVKCVESGGPEPGVG-CAGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVV  131 (289)
T ss_dssp             GGGCEEEECCCCCTTTC-CHHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSC
T ss_pred             CCCeEEEeCCCcccccc-ccchhhhHHHHHHHHHHhhc-cCCCEEEEeCCCccc
Confidence            46888898764322111 00000000112222233344 789999999999753

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.86  E-value=8.2e-22  Score=151.35  Aligned_cols=121  Identities=21%  Similarity=0.182  Sum_probs=85.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCe-eeeecCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV-KCMSMGF  109 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~  109 (168)
                      +++|+|+|+|||+||||+|+|||..|++ .|+||++||+|+.++++...++....  +.+..  ......++ +++|.+.
T Consensus         4 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~q~~l~~~l~~~~~--~~~~~--~~~~~~~l~~vl~~~~   78 (286)
T 2xj4_A            4 TRVIVVGNEKGGAGKSTIAVHLVTALLY-GGAKVAVIDLDLRQRTSARFFENRRA--WLDNK--KIELPEPLALNLSDND   78 (286)
T ss_dssp             CEEEEECCSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCTTTCHHHHHHHHHHH--HHHHH--TCCCCCCEEECSSSCH
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCHHHHhCCChh--HhHhc--cccCCCchheEeeCCC
Confidence            6799999999999999999999999999 99999999999966788888875431  10000  00012345 5665421


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ...    ...........+.++++.++ +.||||||||||+++.....++..
T Consensus        79 ~~~----~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~  125 (286)
T 2xj4_A           79 VAL----AERPEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMAHGR  125 (286)
T ss_dssp             HHH----TTSCHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHHHHT
T ss_pred             CCC----cChhhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHHHHH
Confidence            000    00111234567888888888 899999999999998777666543

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.84  E-value=3e-21  Score=148.59  Aligned_cols=127  Identities=18%  Similarity=0.244  Sum_probs=85.2

Q ss_pred             CeEEEEec--CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc---ccccccCC-CCCccc-------cCceeec
Q 030973           31 KDVIAVAS--GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV---PMMMKIDQ-KPEVTK-------DMKMVPI   97 (168)
Q Consensus        31 ~~vI~v~s--~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l---~~~~~~~~-~~~~~~-------~~~~~~~   97 (168)
                      .++|+|++  +|||+||||+|+|||..|++ .|+||++||+|++++..   ...++... ..++.+       ...+.+.
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  112 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHL  112 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEES
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhccc
Confidence            67888888  89999999999999999999 99999999999997532   22234332 222221       1122222


Q ss_pred             ccCCeeeeecCccCCCCCCcc--cCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHh
Q 030973           98 ENYGVKCMSMGFLVPSSSPVV--WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ  160 (168)
Q Consensus        98 ~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~  160 (168)
                       ..+++++|.+..........  +........+.++++.++ ++||||||||||+++.....++.
T Consensus       113 -~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~l~  175 (298)
T 2oze_A          113 -TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNAIV  175 (298)
T ss_dssp             -SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHHHH
T ss_pred             -CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHHHH
Confidence             46888888764322110000  000112346888999988 89999999999999887655544

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=99.83  E-value=1.1e-20  Score=147.88  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             ecCceeeccccCCcccccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           10 RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        10 ~~~~~r~~~~~~~~~~~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      +||.+|+++.+..     ++..++|+|+|+|||+||||+|+|||..+|+ .|+||++||+|++ ++++..|+..
T Consensus         2 ~~r~lr~~l~~~~-----~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~-~G~rVllvD~D~~-~~l~~~l~~~   68 (329)
T 2woo_A            2 SFDPLPGTLENLL-----EQTSLKWIFVGGKGGVGKTTTSCSLAIQMSK-VRSSVLLISTDPA-HNLSDAFGTK   68 (329)
T ss_dssp             -----CCSTHHHH-----HCTTCCEEEEECSSSSSHHHHHHHHHHHHHT-SSSCEEEEECCTT-CHHHHHHSSC
T ss_pred             CcchhhccHHHHh-----cCCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCC-cCHHHHhCCc
Confidence            6889999988753     2336889999999999999999999999999 9999999999998 7999999875

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=99.82  E-value=6.2e-21  Score=150.64  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      +..++|+|+|+|||+||||+|+|||..||  + .|+|||+||+|++ ++++.+|+.+..
T Consensus        15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~D~~-~~l~~~lg~~~~   71 (354)
T 2woj_A           15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLISTDPA-HNLSDAFGEKFG   71 (354)
T ss_dssp             CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC-CCHHHHhCCCCC
Confidence            34689999999999999999999999999  8 9999999999995 899999998753

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.81  E-value=1.4e-19  Score=141.30  Aligned_cols=53  Identities=26%  Similarity=0.340  Sum_probs=49.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      +++|+|+|+|||+||||+|+|||..+|+ .|+|||+||+|+ +++++..|+....
T Consensus        13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~~   65 (324)
T 3zq6_A           13 KTTFVFIGGKGGVGKTTISAATALWMAR-SGKKTLVISTDP-AHSLSDSLEREIG   65 (324)
T ss_dssp             BCEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEECCS-SCCHHHHHTSCCC
T ss_pred             CeEEEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEeCCC-CcCHHHHhCCcCC
Confidence            5899999999999999999999999999 999999999999 6799999998654

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=99.80  E-value=7.9e-20  Score=143.20  Aligned_cols=53  Identities=32%  Similarity=0.344  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      .+++|.|+|+|||+||||+|+|||..+|+ .|+||++||+|++. +++..|+...
T Consensus        14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~~~-~l~~~l~~~~   66 (334)
T 3iqw_A           14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDPAH-NLSDAFSQKF   66 (334)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCSSC-HHHHHHTSCC
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCCCC-ChhHHhcccc
Confidence            35678899999999999999999999999 99999999999854 8888888653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.79  E-value=1.6e-19  Score=132.81  Aligned_cols=88  Identities=31%  Similarity=0.303  Sum_probs=66.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV  111 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  111 (168)
                      ++|+|+|+|||+||||+|.|||..|++ .| ||++||+|+++ ++...++. .+         .+     ..+++.    
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la~-~g-~VlliD~D~q~-~~~~~~~~-~~---------l~-----~~vi~~----   58 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLAL-QG-ETLLIDGDPNR-SATGWGKR-GS---------LP-----FKVVDE----   58 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHT-TS-CEEEEEECTTC-HHHHHHHH-SC---------CS-----SEEEEG----
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHh-cC-CEEEEECCCCC-CHHHHhcC-CC---------CC-----cceeCH----
Confidence            489999999999999999999999999 99 99999999986 55655654 11         00     023321    


Q ss_pred             CCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCC-CCHHHHHHHh
Q 030973          112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG-TGDAQLTTTQ  160 (168)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~-~~~~~~~~~~  160 (168)
                                    .    .++.++ +.||||||||||+ .+.....++.
T Consensus        59 --------------~----~l~~l~-~~yD~viiD~p~~~~~~~~~~~l~   89 (209)
T 3cwq_A           59 --------------R----QAAKYA-PKYQNIVIDTQARPEDEDLEALAD   89 (209)
T ss_dssp             --------------G----GHHHHG-GGCSEEEEEEECCCSSSHHHHHHH
T ss_pred             --------------H----HHHHhh-hcCCEEEEeCCCCcCcHHHHHHHH
Confidence                          0    344455 7899999999999 7776665554

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=99.73  E-value=2.4e-18  Score=135.44  Aligned_cols=53  Identities=28%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcccccccCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      ..+.|+|+++|||+||||+|+|||..+|  + .|+||++||+|+ +++++..|+...
T Consensus        16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-~g~~vllid~D~-~~~l~~~~~~~~   70 (348)
T 3io3_A           16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDP-AHNLSDAFCQKF   70 (348)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCS-SCHHHHHHTSCC
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCC-CCChHHHhcccc
Confidence            3557788889999999999999999999  8 999999999997 568999998654

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=99.70  E-value=4.5e-17  Score=129.15  Aligned_cols=51  Identities=27%  Similarity=0.366  Sum_probs=45.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      ..|.++++|||+||||+|+|||..+|+ .|+|||+||+ + +++++..|+....
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~-~g~~vllvd~-~-~~~l~~~~~~~~~   52 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLAS-QGKRVLLAGL-A-EPVLPLLLEQTLT   52 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHH-TTCCEEEEEC-S-CSHHHHHHTSCCC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCeEEEeC-C-CCChHHhhCCCCC
Confidence            467888999999999999999999999 9999999999 5 5699999987643

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.68  E-value=3.9e-17  Score=136.53  Aligned_cols=54  Identities=26%  Similarity=0.284  Sum_probs=48.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP   86 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~   86 (168)
                      ++.|.|+++|||+||||+|+|||..+|+ .|+|||+||+|++ ++++..|+.+...
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~~-~~l~~~l~~~~~~   60 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDPA-SNVGQVFSQTIGN   60 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT-CCHHHHTTSCCCS
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHH-CCCcEEEEECCCC-cCHHHHhCCcccC
Confidence            4456788999999999999999999999 9999999999995 8999999986543

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.65  E-value=7.9e-17  Score=118.84  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=35.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .|+|+|+|.|||+||||+|+|||..|++ .|+||+++|
T Consensus         1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~-~G~rVll~d   37 (224)
T 1byi_A            1 SKRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK   37 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEc
Confidence            3789999999999999999999999999 999999976

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.61  E-value=1.2e-15  Score=123.29  Aligned_cols=98  Identities=23%  Similarity=0.278  Sum_probs=69.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeec
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM  107 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (168)
                      +.+++|+|+ ++||+||||++.+||.++++ . |+||++||+|++++.....+..             .....++++++.
T Consensus        98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~-~~G~kVllvd~D~~r~~a~~ql~~-------------~~~~~~l~v~~~  162 (433)
T 2xxa_A           98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLRE-KHKKKVLVVSADVYRPAAIKQLET-------------LAEQVGVDFFPS  162 (433)
T ss_dssp             SSSEEEEEE-CSTTSSHHHHHHHHHHHHHH-TSCCCEEEEECCCSSTTHHHHHHH-------------HHHHHTCEECCC
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-hcCCeEEEEecCCCCccHHHHHHh-------------hcccCCeeEEeC
Confidence            347788887 68999999999999999999 8 9999999999998775543321             012245666654


Q ss_pred             CccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                      +..    .       .....+.+.++.+++..||||||||||.+.
T Consensus       163 ~~~----~-------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~  196 (433)
T 2xxa_A          163 DVG----Q-------KPVDIVNAALKEAKLKFYDVLLVDTAGRLH  196 (433)
T ss_dssp             CSS----S-------CHHHHHHHHHHHHHHTTCSEEEEECCCCCT
T ss_pred             CCC----C-------CHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence            420    0       112233556666553589999999998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.55  E-value=7.2e-15  Score=114.44  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG  108 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (168)
                      ..+++|++++. +|+||||++.+||..++. .|++|+++|+|++++.....+.....          .....++.++|.+
T Consensus       103 ~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~~~~----------~~~~~~l~vip~~  170 (320)
T 1zu4_A          103 NRLNIFMLVGV-NGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEEWIK----------TRLNNKVDLVKAN  170 (320)
T ss_dssp             TSCEEEEEESS-TTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHHHHT----------TTSCTTEEEECCS
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHh----------ccccCCceEEeCC
Confidence            34789999986 999999999999999999 99999999999987543221110000          0013567777543


Q ss_pred             ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973          109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD  153 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~  153 (168)
                      ..   ...     + ....++.+...++ +.||+|||||||.+..
T Consensus       171 ~~---~~~-----p-~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~  205 (320)
T 1zu4_A          171 KL---NAD-----P-ASVVFDAIKKAKE-QNYDLLLIDTAGRLQN  205 (320)
T ss_dssp             ST---TCC-----H-HHHHHHHHHHHHH-TTCSEEEEECCCCGGG
T ss_pred             CC---CCC-----H-HHHHHHHHHHHHh-cCCCEEEEcCCCcccc
Confidence            21   010     1 1122344444445 7999999999998753

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.54  E-value=8.5e-16  Score=128.43  Aligned_cols=53  Identities=32%  Similarity=0.413  Sum_probs=40.8

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      ...++|.|+++|||+||||+|+|||..+++ .|+||++||+|++ +++...|+..
T Consensus       324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-~g~~vllvD~Dp~-~~l~~~l~~~  376 (589)
T 1ihu_A          324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPA-AHLSMTLNGS  376 (589)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC-----------
T ss_pred             ccCCeEEEEecCCCCChhhHHHHHHHHHHH-CCCcEEEEeCCCc-ccHhHHhccc
Confidence            446889999999999999999999999999 9999999999998 5788888763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.48  E-value=6e-14  Score=108.18  Aligned_cols=96  Identities=27%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      +++|+++ +++|+||||++.+||..++. .|+||+++|+|++++.....+...             ....++.+++... 
T Consensus        98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~-------------~~~~~v~v~~~~~-  161 (297)
T 1j8m_F           98 PYVIMLV-GVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQL-------------GQQIGVPVYGEPG-  161 (297)
T ss_dssp             SEEEEEE-CSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHH-------------HHHHTCCEECCTT-
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHH-------------hccCCeEEEecCC-
Confidence            6778776 68999999999999999999 999999999999987665443211             0113455554210 


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                         ..       .....+.+.++.++++.||+|||||||...
T Consensus       162 ---~~-------~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~  193 (297)
T 1j8m_F          162 ---EK-------DVVGIAKRGVEKFLSEKMEIIIVDTAGRHG  193 (297)
T ss_dssp             ---CC-------CHHHHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred             ---CC-------CHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence               00       112233456666543689999999999876

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.43  E-value=1.5e-13  Score=105.95  Aligned_cols=97  Identities=22%  Similarity=0.289  Sum_probs=66.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      .+++|+++ +++|+||||++.+||..++. .|++|+++|+|++++.....+..     +        ....++.+++.+.
T Consensus        97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~-----~--------~~~~~l~~~~~~~  161 (295)
T 1ls1_A           97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRL-----L--------GEKVGVPVLEVMD  161 (295)
T ss_dssp             SSEEEEEE-CCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHH-----H--------HHHHTCCEEECCT
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHH-----h--------cccCCeEEEEcCC
Confidence            57899998 78999999999999999999 99999999999988655433321     0        1123566665432


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                         . ..     +  ....+..++.+...+||+|||||||..+
T Consensus       162 ---~-~~-----p--~~l~~~~l~~~~~~~~D~viiDtpp~~~  193 (295)
T 1ls1_A          162 ---G-ES-----P--ESIRRRVEEKARLEARDLILVDTAGRLQ  193 (295)
T ss_dssp             ---T-CC-----H--HHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred             ---C-CC-----H--HHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence               0 10     1  1122445555421689999999998753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.42  E-value=4.4e-14  Score=106.29  Aligned_cols=45  Identities=24%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      ....+.++++|||+||||++.+||..++  .|+||++||+|++...+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSSCSCC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCCcccc
Confidence            4678899999999999999999999998  69999999999988654

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.42  E-value=1.8e-13  Score=110.11  Aligned_cols=97  Identities=22%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      .+++|+++ +++|+||||++.+||..++. .|++|+++|+|++++.....+...             ....++.+++.+.
T Consensus        97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~v~~~~~  161 (425)
T 2ffh_A           97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMD  161 (425)
T ss_dssp             SSEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCCEEECCT
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHh-------------cccCCccEEecCC
Confidence            47888887 67999999999999999999 899999999999987665444321             0123566666542


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                         . ..     +  ...+.+.++.++.+.||+|||||||.+.
T Consensus       162 ---~-~~-----p--~~i~~~~l~~~~~~~~DvVIIDTaG~l~  193 (425)
T 2ffh_A          162 ---G-ES-----P--ESIRRRVEEKARLEARDLILVDTAGRLQ  193 (425)
T ss_dssp             ---T-CC-----H--HHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred             ---C-CC-----H--HHHHHHHHHHHHHCCCCEEEEcCCCccc
Confidence               1 10     1  1223456666532789999999999763

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.37  E-value=1.2e-12  Score=105.63  Aligned_cols=96  Identities=17%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      .+++|++++. +|+||||++.+||.++++ .|+||++|++|++++.....+.....             ..++.+.... 
T Consensus        99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~-------------~~gvpv~~~~-  162 (443)
T 3dm5_A           99 KPTILLMVGI-QGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLD-------------RYHIEVFGNP-  162 (443)
T ss_dssp             SSEEEEEECC-TTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHG-------------GGTCEEECCT-
T ss_pred             CCeEEEEECc-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHH-------------hcCCcEEecC-
Confidence            4677777665 999999999999999999 99999999999998765433332111             1223333211 


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                        .   .     ......+.+.++.++.+.||+||||||+..
T Consensus       163 --~---~-----~dp~~i~~~al~~a~~~~~DvVIIDTaGrl  194 (443)
T 3dm5_A          163 --Q---E-----KDAIKLAKEGVDYFKSKGVDIIIVDTAGRH  194 (443)
T ss_dssp             --T---C-----CCHHHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred             --C---C-----CCHHHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence              0   0     011233445555555357999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.35  E-value=2.2e-12  Score=104.09  Aligned_cols=95  Identities=26%  Similarity=0.287  Sum_probs=63.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      +++|++++ .+|+||||++.+||..+++ .|+||++||+|++++.....+...             ....++.+.+.+..
T Consensus        99 ~~vI~ivG-~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~~-------------~~~~gv~v~~~~~~  163 (432)
T 2v3c_C           99 QNVILLVG-IQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQL-------------AEKIHVPIYGDETR  163 (432)
T ss_dssp             CCCEEEEC-CSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHHH-------------HHHSSCCEECCSSS
T ss_pred             CeEEEEEC-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHHh-------------hhccCcceEecCCC
Confidence            56888877 5999999999999999999 899999999999987764433210             01234445543210


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                       ...+.         ..+.+.++.+  ..||+||||||+...
T Consensus       164 -~~dp~---------~i~~~~l~~~--~~~D~vIIDT~G~~~  193 (432)
T 2v3c_C          164 -TKSPV---------DIVKEGMEKF--KKADVLIIDTAGRHK  193 (432)
T ss_dssp             -CCSSS---------TTHHHHHHTT--SSCSEEEEECCCSCS
T ss_pred             -CCCHH---------HHHHHHHHHh--hCCCEEEEcCCCCcc
Confidence             00110         1123444444  589999999999764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.30  E-value=2.7e-12  Score=105.30  Aligned_cols=98  Identities=18%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG  108 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (168)
                      ...++|++++ .+|+||||++.+||.++++ .|+||++||+|++++.....+....             ...++.+++..
T Consensus        99 ~~~~vI~ivG-~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~-------------~~~~i~v~~~~  163 (504)
T 2j37_W           99 GKQNVIMFVG-LQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNA-------------TKARIPFYGSY  163 (504)
T ss_dssp             S--EEEEEEC-STTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHH-------------HHHTCCEEECC
T ss_pred             CCCeEEEEEC-CCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHh-------------hccCceEEccC
Confidence            3467888875 5899999999999999999 9999999999999876544332211             11233333321


Q ss_pred             ccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                         . ...       ....+.+.++.+++..||+||||||+...
T Consensus       164 ---~-~~d-------p~~i~~~al~~~~~~~~DvvIIDTpG~~~  196 (504)
T 2j37_W          164 ---T-EMD-------PVIIASEGVEKFKNENFEIIIVDTSGRHK  196 (504)
T ss_dssp             ---C-CSC-------HHHHHHHHHHHHHHTTCCEEEEEECCCCT
T ss_pred             ---C-CCC-------HHHHHHHHHHHHHHCCCcEEEEeCCCCcc
Confidence               0 000       11222334444433689999999999763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.20  E-value=4.3e-11  Score=96.47  Aligned_cols=97  Identities=27%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCc
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF  109 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  109 (168)
                      .+++|+++ +.+|+||||++.+||..++. .|++|+++|+|++++.....+.....             ..++.+.... 
T Consensus        96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~-------------~~gv~~~~~~-  159 (433)
T 3kl4_A           96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGN-------------QIGVQVYGEP-  159 (433)
T ss_dssp             SSEEEEEC-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHH-------------TTTCCEECCT-
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHH-------------hcCCceeecc-
Confidence            35666665 67899999999999999999 99999999999987543322221110             0122222111 


Q ss_pred             cCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q 030973          110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG  152 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~  152 (168)
                           ..     ........+.++.+.+..||+||||||+...
T Consensus       160 -----~~-----~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~  192 (433)
T 3kl4_A          160 -----NN-----QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG  192 (433)
T ss_dssp             -----TC-----SCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred             -----cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence                 00     0112233455666554689999999998643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.19  E-value=2.4e-11  Score=93.95  Aligned_cols=45  Identities=29%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ..+++|++++. +|+||||++.+||..++. .|++|+++|+|.+++.
T Consensus       102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~  146 (306)
T 1vma_A          102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAA  146 (306)
T ss_dssp             SSCEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHH
T ss_pred             CCCeEEEEEcC-CCChHHHHHHHHHHHHHh-cCCEEEEEccccccHH
Confidence            34789999887 999999999999999999 8999999999997754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.16  E-value=1.2e-10  Score=89.57  Aligned_cols=49  Identities=22%  Similarity=0.245  Sum_probs=41.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccc
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM   78 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~   78 (168)
                      ..+++|++++. +|+||||++.+||..++...|++|+++|+|++++....
T Consensus       103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~e  151 (296)
T 2px0_A          103 IHSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVE  151 (296)
T ss_dssp             CCSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHH
T ss_pred             CCCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHH
Confidence            34778999876 89999999999999998437999999999998765543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=99.02  E-value=4.9e-10  Score=82.77  Aligned_cols=45  Identities=18%  Similarity=0.110  Sum_probs=41.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++...|+++|||+||||++.++|..+++ .|++|+++|+|+++..
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~   48 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRA   48 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCCh
Confidence            46788899999999999999999999999 9999999999997643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.93  E-value=3.5e-09  Score=83.35  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=35.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ...+|++ ++++|+||||++.+|+..++. .|+||+++|+|++.+
T Consensus        78 ~~~~I~i-~G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~Dp~~~  120 (355)
T 3p32_A           78 NAHRVGI-TGVPGVGKSTAIEALGMHLIE-RGHRVAVLAVDPSST  120 (355)
T ss_dssp             CSEEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC----
T ss_pred             CceEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCceEEEecCCCCC
Confidence            4566766 567999999999999999999 999999999999775

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=98.80  E-value=3.1e-09  Score=78.84  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=35.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +++.|.|++...|+|||+++++|+..|++ +|+||...-
T Consensus         3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~-~G~~V~~~K   40 (228)
T 3of5_A            3 AMKKFFIIGTDTEVGKTYISTKLIEVCEH-QNIKSLCLK   40 (228)
T ss_dssp             TCEEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEec
Confidence            48999999999999999999999999999 999999853

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=98.71  E-value=1e-08  Score=76.74  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             ccCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        26 ~~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++.++++.|.|++...|+|||++++.|+..|++ +|+||..+-
T Consensus        16 ~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~-~G~~V~~fK   57 (242)
T 3qxc_A           16 NLYFQGHMLFISATNTNAGKTTCARLLAQYCNA-CGVKTILLK   57 (242)
T ss_dssp             ---CCCEEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             HHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCceEEEe
Confidence            456668999999999999999999999999999 999999984

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.71  E-value=1.3e-08  Score=79.63  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ...+|++++ ++|+||||+..+|+..+.. .|.+|.+++.|++.+.
T Consensus        55 ~~~~i~i~G-~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           55 NTLRLGVTG-TPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             CSEEEEEEE-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC---
T ss_pred             CCEEEEEEc-CCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCcCC
Confidence            377888865 9999999999999999999 8999999999997754

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=98.70  E-value=2.6e-08  Score=74.89  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=36.2

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++++.|.|++...|+|||++++.|+..|++ +|+||..+-
T Consensus        24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~-~G~~V~~fK   62 (251)
T 3fgn_A           24 SHMTILVVTGTGTGVGKTVVCAALASAARQ-AGIDVAVCK   62 (251)
T ss_dssp             SSCEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             cCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEe
Confidence            348999999999999999999999999999 999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.37  E-value=1.1e-06  Score=68.36  Aligned_cols=45  Identities=27%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ..+.+|++++. .|+||||++..||..+.. .+.+|++++.|..+.+
T Consensus       127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~  171 (328)
T 3e70_C          127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAG  171 (328)
T ss_dssp             CSSEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTT
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccc
Confidence            34778888665 899999999999999998 8999999999987654

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=98.23  E-value=3.8e-06  Score=60.64  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|.++.++| .||||.|..+|..++. .|+||+++=+..
T Consensus        29 g~i~v~tG~G-kGKTTaA~GlalRA~g-~G~rV~~vQF~K   66 (196)
T 1g5t_A           29 GIIIVFTGNG-KGKTTAAFGTAARAVG-HGKNVGVVQFIK   66 (196)
T ss_dssp             CCEEEEESSS-SCHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ceEEEECCCC-CCHHHHHHHHHHHHHH-CCCeEEEEEeeC
Confidence            4566667776 9999999999999999 999999998776

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.22  E-value=3.8e-06  Score=68.65  Aligned_cols=42  Identities=31%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.+|++++. +|+||||++..||..+.. .+.+|++.+.|..+
T Consensus       292 ~GeVI~LVGp-NGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          292 APFVILMVGV-NGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFR  333 (503)
T ss_dssp             TTEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTC
T ss_pred             CCeEEEEECC-CcccHHHHHHHHHHHhhh-cCCeEEEecCcccc
Confidence            3778888755 899999999999999988 88999999999865

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.18  E-value=1.2e-05  Score=63.31  Aligned_cols=40  Identities=18%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++++.+ .+.+|+||||+|.++|..+++ .|.+|++||++..
T Consensus        63 G~ii~I-~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s  102 (356)
T 1u94_A           63 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA  102 (356)
T ss_dssp             TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            445555 679999999999999999999 9999999999753

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.14  E-value=6.4e-06  Score=63.44  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .+.+|++++ .+|+||||++..||..+.. .+.+|++.+.|..+..
T Consensus       101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~~  144 (304)
T 1rj9_A          101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAA  144 (304)
T ss_dssp             SSSEEEEEC-STTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTT
T ss_pred             CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCChh
Confidence            477888875 5899999999999999998 8999999999987643

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.00  E-value=2.8e-05  Score=61.37  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++.+ .+.+|+||||+|.++|..+++ .|.+|++||++..
T Consensus        74 G~li~I-~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s  113 (366)
T 1xp8_A           74 GRITEI-YGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHA  113 (366)
T ss_dssp             TSEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred             CcEEEE-EcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence            556666 578899999999999999999 9999999999964

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.88  E-value=2.4e-05  Score=55.19  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++|.+++ ..|+||||++..|+..|.. .|.+|.+|..|+..
T Consensus         3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~   44 (169)
T 1xjc_A            3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHG   44 (169)
T ss_dssp             -CCEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred             CCEEEEEEC-CCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCC
Confidence            377888877 6699999999999999998 99999999999854

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.82  E-value=0.00014  Score=53.55  Aligned_cols=36  Identities=17%  Similarity=0.143  Sum_probs=31.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+.++.+..|+||||.+..++..++. .|++|+++-.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~   48 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKP   48 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEe
Confidence            46666888899999999999999999 9999999943

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.82  E-value=3.1e-05  Score=55.91  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +..+.+.+|+||||++.++|.   . .|.+|++++++..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~~~~   56 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL---L-SGKKVAYVDTEGG   56 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH---H-HCSEEEEEESSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHH---H-cCCcEEEEECCCC
Confidence            445578899999999999998   4 6889999999873

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.78  E-value=7.9e-05  Score=58.40  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++.+ .+.+|+||||++.+++..++. .|.+|++||++..
T Consensus        61 G~iv~I-~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~  100 (349)
T 2zr9_A           61 GRVIEI-YGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHA  100 (349)
T ss_dssp             TSEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence            556666 567999999999999999999 9999999999853

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.76  E-value=0.0002  Score=56.31  Aligned_cols=41  Identities=17%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++.++ +.+|+||||++.+++..++. .|.+|++||++...
T Consensus        61 G~i~~I~-GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~  101 (356)
T 3hr8_A           61 GRIVEIF-GQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHAL  101 (356)
T ss_dssp             TEEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccccc
Confidence            5566665 45999999999999999999 99999999998643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.68  E-value=0.00011  Score=53.19  Aligned_cols=40  Identities=15%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++++ .+..|+||||++..++..++. .+.+|++++.+..
T Consensus        23 G~~~~i-~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~   62 (235)
T 2w0m_A           23 GFFIAL-TGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEES   62 (235)
T ss_dssp             TCEEEE-ECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSC
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccC
Confidence            456666 577999999999999988888 7889999998864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.61  E-value=0.00029  Score=54.53  Aligned_cols=39  Identities=10%  Similarity=0.050  Sum_probs=33.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~~   73 (168)
                      +..+.+.+|+||||++.+++..+++ .  |.+|++||+....
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~   70 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGI   70 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchh
Confidence            3455677999999999999999988 6  8999999997643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.58  E-value=9.1e-05  Score=52.33  Aligned_cols=40  Identities=35%  Similarity=0.344  Sum_probs=33.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +..|. +.+..|+||||++..||..+.. .|.+|.++|.|..
T Consensus        13 ~~~i~-l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~d~~   52 (186)
T 2yvu_A           13 GIVVW-LTGLPGSGKTTIATRLADLLQK-EGYRVEVLDGDWA   52 (186)
T ss_dssp             CEEEE-EECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CcEEE-EEcCCCCCHHHHHHHHHHHHHh-cCCeEEEeeHHHH
Confidence            44454 4688999999999999999998 8999999998753

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.57  E-value=0.00035  Score=50.12  Aligned_cols=36  Identities=17%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++ |.++.+.-|+||||.+..++..+.. +|+||+++-
T Consensus         8 g~-i~v~~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k   43 (191)
T 1xx6_A            8 GW-VEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFK   43 (191)
T ss_dssp             CE-EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CE-EEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence            44 5566777799999999999999999 999999995

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.51  E-value=0.00013  Score=54.68  Aligned_cols=40  Identities=38%  Similarity=0.456  Sum_probs=33.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +..|.+ .+-+|+||||++..|+..|.. .|..++++|.|..
T Consensus         4 ~~lIvl-~G~pGSGKSTla~~La~~L~~-~g~~~i~~~~D~~   43 (260)
T 3a4m_A            4 IMLIIL-TGLPGVGKSTFSKNLAKILSK-NNIDVIVLGSDLI   43 (260)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEECTHHH
T ss_pred             CEEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCEEEEECchHH
Confidence            455555 667999999999999999998 8999998988853

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.45  E-value=0.00027  Score=54.27  Aligned_cols=43  Identities=28%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .+.++++++ ..|+||||++..||..+.. .+.+|++.+.|..+.
T Consensus        99 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~  141 (302)
T 3b9q_A           99 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRA  141 (302)
T ss_dssp             SCEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCH
T ss_pred             CCcEEEEEc-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccch
Confidence            467888876 5899999999999999998 889999999998653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.38  E-value=0.00034  Score=54.98  Aligned_cols=43  Identities=28%  Similarity=0.292  Sum_probs=37.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .+.+|++++ ..|+||||++..||..+.. .+.+|++.+.|..+.
T Consensus       156 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~  198 (359)
T 2og2_A          156 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRA  198 (359)
T ss_dssp             SSEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCH
T ss_pred             CCeEEEEEc-CCCChHHHHHHHHHhhccc-cCCEEEEeccccccc
Confidence            477888876 5899999999999999998 899999999998663

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.36  E-value=0.0027  Score=49.54  Aligned_cols=43  Identities=26%  Similarity=0.239  Sum_probs=34.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      ..+|++ .+.+|+||||+.-.|...+.. .+.+|.++..|++...
T Consensus        74 ~~~v~l-vG~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp~~~~  116 (349)
T 2www_A           74 AFRVGL-SGPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDPSSCT  116 (349)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC----
T ss_pred             ceEEEE-EcCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecCCCCC
Confidence            556666 578999999999999999988 8999999999997643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.35  E-value=0.00024  Score=52.02  Aligned_cols=40  Identities=15%  Similarity=0.100  Sum_probs=34.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.++.+ .+.+|+||||++.+++..++. .|.+|++++++..
T Consensus        23 G~~~~i-~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~~   62 (247)
T 2dr3_A           23 RNVVLL-SGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEEH   62 (247)
T ss_dssp             TCEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence            455555 567999999999999999999 8999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.34  E-value=0.00028  Score=54.36  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      -+.++.+.+|+||||++.++|..++. .|.+|+++.++..
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s  107 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMG  107 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence            45566889999999999999999999 8999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.27  E-value=0.00021  Score=54.57  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ..+|++ ++..|+||||+|..|+..+.. .|.++.+||+|-...
T Consensus         5 ~~iIgI-tG~sGSGKSTva~~L~~~lg~-~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            5 HPIISV-TGSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDAFHR   46 (290)
T ss_dssp             SCEEEE-ESCC---CCTHHHHHHHHHHH-HTCCEEEEEGGGGBS
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCCeeEeecchhhc
Confidence            556777 578899999999999999887 788999999998664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.21  E-value=0.0014  Score=51.00  Aligned_cols=41  Identities=34%  Similarity=0.392  Sum_probs=35.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++++ .+..|+||||+...|+..+.. .+.+|.++..|+..
T Consensus        55 g~~v~i-~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           55 AIRVGI-TGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSS   95 (337)
T ss_dssp             SEEEEE-ECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGG
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcc
Confidence            666666 578899999999999998888 88999999998854

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.19  E-value=0.00039  Score=56.18  Aligned_cols=42  Identities=14%  Similarity=0.156  Sum_probs=36.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .-+.++.+.+|+||||++.++|...+. .|.+|+++.++....
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEms~~  238 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKK  238 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSSCTT
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCCCHH
Confidence            345666889999999999999999999 899999999987553

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.17  E-value=0.00033  Score=49.27  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.|. +.+-.|+||||++..|+..+.. .|.++..++.|
T Consensus         2 ~~I~-i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~~~   38 (194)
T 1nks_A            2 KIGI-VTGIPGVGKSTVLAKVKEILDN-QGINNKIINYG   38 (194)
T ss_dssp             EEEE-EEECTTSCHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred             eEEE-EECCCCCCHHHHHHHHHHHHHh-cCceEEEEECC
Confidence            4444 4678899999999999999998 89999999754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.16  E-value=0.0005  Score=53.62  Aligned_cols=40  Identities=10%  Similarity=0.277  Sum_probs=35.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -+.++.+.+|+||||++.++|..++. .|.+|+++.++...
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~   86 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSA   86 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCH
Confidence            35556889999999999999999999 99999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.15  E-value=0.00082  Score=47.44  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +++++++ +..|+||||++..|...+.. .|.+|-.|..++..
T Consensus         6 ~~~i~i~-G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEE-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-
T ss_pred             ceEEEEE-eCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCc
Confidence            5677665 57899999999999999988 89999999988744

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.14  E-value=0.0016  Score=47.45  Aligned_cols=35  Identities=17%  Similarity=0.069  Sum_probs=31.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .|-|+.+.-|+||||.+..++..+.. +|+||+++-
T Consensus        29 ~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k   63 (214)
T 2j9r_A           29 WIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFK   63 (214)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence            46666777799999999999999999 999999985

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.13  E-value=0.00054  Score=50.13  Aligned_cols=41  Identities=17%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+|||++|.++|...+...|++|++++++...
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~   71 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA   71 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCH
Confidence            45566889999999999999987654268999999998643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.10  E-value=0.0037  Score=42.76  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.+++ .+..|+||||++..++..+.. .|++++.++...
T Consensus        36 g~~~~l-~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~   74 (149)
T 2kjq_A           36 GQFIYV-WGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAAS   74 (149)
T ss_dssp             CSEEEE-ESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHH
Confidence            556666 577899999999999999988 899999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00086  Score=48.28  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++|+++ +.+|+||||++.+|+..+.. . ++|.+|+.|+..
T Consensus        30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~-~-~~~~~i~~d~~~   69 (221)
T 2wsm_A           30 TVAVNIM-GAIGSGKTLLIERTIERIGN-E-VKIGAMLGDVVS   69 (221)
T ss_dssp             CEEEEEE-ECTTSCHHHHHHHHHHHHTT-T-SCEEEEECSCCC
T ss_pred             ceEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEecCCCC
Confidence            5667665 58899999999999998866 4 899999999853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.99  E-value=0.00049  Score=51.10  Aligned_cols=43  Identities=28%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~~~~   74 (168)
                      +.+|++ .+..|+||||+|..|+..+...    .+++|++||+|-...
T Consensus        22 ~~iI~I-~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           22 PFLIGV-SGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             CEEEEE-ECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             cEEEEE-ECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            445555 6889999999999999987641    267899999997553

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.96  E-value=0.0012  Score=47.35  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|++ .+..|+||||++..|+..+.. .|.+|.+++.|...
T Consensus        22 ~~~i~i-~G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           22 RLVLGI-DGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDDHI   62 (201)
T ss_dssp             SEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGGC
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCccc
Confidence            556666 667899999999999999988 88899999888654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.87  E-value=0.0044  Score=57.39  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++.+.+|+||||++.++|..++. .|.+|++++++...
T Consensus       734 lVlI~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~  772 (1706)
T 3cmw_A          734 IVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL  772 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred             eEEEECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence            4455789999999999999999999 99999999998754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.83  E-value=0.0013  Score=52.94  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      -+.++.+.+|+||||++.++|...+...|.+|+++++...
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP  240 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            3556678999999999999999998724899999999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.83  E-value=0.0016  Score=52.62  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++.+.+|+||||++.++|..++...|.+|++++++...
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~  244 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA  244 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence            5555789999999999999999986358899999998643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.81  E-value=0.0012  Score=46.89  Aligned_cols=37  Identities=22%  Similarity=0.212  Sum_probs=31.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.+.+ .+.+|+|||+++..++..+.. .+.+|+.+++.
T Consensus        55 ~~~~l-~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYL-HGSFGVGKTYLLAAIANELAK-RNVSSLIVYVP   91 (202)
T ss_dssp             CEEEE-ECSTTSSHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred             CeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEhH
Confidence            44554 578899999999999999998 89999998864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.79  E-value=0.0016  Score=46.18  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |.++.+..|+||||++..++..+.. .|++|+++-.
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~   39 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKP   39 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEee
Confidence            4555677899999999999999998 9999999743

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.78  E-value=0.0016  Score=46.40  Aligned_cols=42  Identities=36%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      +.+|++ .+..|+||||++..||..+.. .|..+..+|.|.-..
T Consensus        25 g~~i~l-~G~sGsGKSTl~~~La~~l~~-~G~~~~~~d~d~~~~   66 (200)
T 3uie_A           25 GCVIWV-TGLSGSGKSTLACALNQMLYQ-KGKLCYILDGDNVRH   66 (200)
T ss_dssp             CEEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCceEEEecCchhhh
Confidence            566666 578899999999999999987 898888899876443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.77  E-value=0.0016  Score=45.46  Aligned_cols=41  Identities=24%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +..|++ .+..|+||||++..|+..+.. .|.+++.+|.|...
T Consensus         5 g~~i~l-~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~   45 (179)
T 2pez_A            5 GCTVWL-TGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR   45 (179)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence            556665 578999999999999999987 89999999877544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.75  E-value=0.0079  Score=55.76  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+||||+|.++|...++ .|.+|++||++...
T Consensus       384 ~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~  423 (1706)
T 3cmw_A          384 RIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL  423 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCch
Confidence            34455789999999999999999999 99999999999755

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.74  E-value=0.0017  Score=46.83  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ...+|+++ +.+|+||||++.+++..+.. . .++..|+.|+.
T Consensus        37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~-~-~~~~~i~~d~~   76 (226)
T 2hf9_A           37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKD-K-YKIACIAGDVI   76 (226)
T ss_dssp             TCEEEEEE-ESTTSSHHHHHHHHHHHHTT-T-CCEEEEEEETT
T ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEECCCC
Confidence            35677776 56999999999999998766 4 78999998875

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.74  E-value=0.012  Score=48.61  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             CCeEEEEe-cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~-s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++|-|.|+ +..+++||+.+++.|++.|.. +|.||..+-.||+
T Consensus        11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~-~g~~v~~~k~~py   53 (550)
T 1vco_A           11 PRKYVFITGGVVSSLGKGILTSSLGALLRA-RGYRVTAIKIDPY   53 (550)
T ss_dssp             CCEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECS
T ss_pred             ceeEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeEeecccc
Confidence            36889999 999999999999999999999 9999999988763

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.70  E-value=0.0079  Score=56.55  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+||||+|.++|..+++ .|.+|++||++...
T Consensus       384 ~lilI~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~  423 (2050)
T 3cmu_A          384 RIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL  423 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCH
Confidence            34555789999999999999999999 89999999999755

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.69  E-value=0.00085  Score=54.83  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=34.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+||||++.++|..++. . |.+|++++++...
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~s~  283 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEESV  283 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSSCH
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccCCH
Confidence            35566889999999999999999998 6 9999999998743

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.67  E-value=0.0013  Score=50.79  Aligned_cols=40  Identities=20%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~~   72 (168)
                      +.++. +.+.+|+||||++.++|..++. .      +.+|++||++..
T Consensus       107 G~i~~-i~G~~GsGKT~la~~la~~~~~-~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A          107 RTMTE-FFGEFGSGKTQLCHQLSVNVQL-PPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             TSEEE-EEESTTSSHHHHHHHHHHHTTS-CGGGTCCSCEEEEEESSSC
T ss_pred             CcEEE-EECCCCCCHhHHHHHHHHHHhc-ccccCCCCCeEEEEECCCC
Confidence            44444 4677899999999999998766 5      789999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.66  E-value=0.0022  Score=46.36  Aligned_cols=40  Identities=8%  Similarity=0.004  Sum_probs=33.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+.+ .+..|+||||++..++..+.. .+.+++.++++..
T Consensus        52 ~~~~ll-~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~   91 (242)
T 3bos_A           52 VQAIYL-WGPVKSGRTHLIHAACARANE-LERRSFYIPLGIH   91 (242)
T ss_dssp             CSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGG
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHHH
Confidence            445555 677899999999999999999 8999999998653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.65  E-value=0.0016  Score=46.90  Aligned_cols=41  Identities=32%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D~~~   73 (168)
                      +++|.+ .+..|+||||++..|+..+. . .|.++..+|.|...
T Consensus        25 ~~~i~~-~G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~~r   66 (211)
T 1m7g_A           25 GLTIWL-TGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIR   66 (211)
T ss_dssp             CEEEEE-ECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHhccc-cCCcEEEECChHHh
Confidence            555555 57899999999999999998 6 78899999977543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.64  E-value=0.0014  Score=45.98  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++.+..|+||||++..|+..+.. .|.+.-.+|.|
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~i~~~   40 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLRK-EGVNYKMVSFG   40 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT-TTCCCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh-cCcceEEEehH
Confidence            4455788999999999999999987 77555566644

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.61  E-value=0.0032  Score=44.12  Aligned_cols=33  Identities=30%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .++.+..|+||||++..|+..+.. .|..|+-.|
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l~~-~g~~~i~~d   35 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYLKQ-KGYFVSLYR   35 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence            344678899999999999999988 898887665

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.59  E-value=0.0027  Score=48.04  Aligned_cols=40  Identities=33%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++ .+.+|+||||++.++|..++...|.+|++++.+.
T Consensus        35 G~~~~i-~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           35 GEVIMV-TSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             TCEEEE-EESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CeEEEE-EeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            555555 6788999999999999999872488999999875

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.59  E-value=0.0018  Score=53.66  Aligned_cols=39  Identities=41%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+| ++.+..|+||||++..|+..+.. .|+++.++|.|.
T Consensus       372 ~~~I-~l~G~~GsGKSTia~~La~~L~~-~G~~~~~ld~D~  410 (546)
T 2gks_A          372 GFCV-WLTGLPCAGKSTIAEILATMLQA-RGRKVTLLDGDV  410 (546)
T ss_dssp             CEEE-EEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECHHH
T ss_pred             ceEE-EccCCCCCCHHHHHHHHHHHhhh-cCCeEEEECchH
Confidence            4444 44688899999999999999998 999999999885

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.56  E-value=0.0022  Score=44.78  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++.+.+ .+..|+||||++..++..+....|.+|+.+++.
T Consensus        38 g~~~~l-~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~   76 (180)
T 3ec2_A           38 GKGLTF-VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK   76 (180)
T ss_dssp             CCEEEE-CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            455555 678999999999999999983289888887654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.51  E-value=0.0072  Score=56.83  Aligned_cols=40  Identities=18%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++.| ++.+.+|+|||++|.++|....+ .|.+|++||++..
T Consensus      1427 g~~v-ll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A         1427 GRIV-EIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 1466 (2050)
T ss_dssp             TSEE-EEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSC
T ss_pred             CeEE-EEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccc
Confidence            4444 44688899999999999999998 9999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.0014  Score=46.74  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=26.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+++|++ .+..|+||||++..|+..+    |  ..+||.|..
T Consensus        17 ~~~~I~l-~G~~GsGKSTla~~L~~~l----g--~~~i~~d~~   52 (202)
T 3t61_A           17 FPGSIVV-MGVSGSGKSSVGEAIAEAC----G--YPFIEGDAL   52 (202)
T ss_dssp             CSSCEEE-ECSTTSCHHHHHHHHHHHH----T--CCEEEGGGG
T ss_pred             CCeEEEE-ECCCCCCHHHHHHHHHHHh----C--CEEEeCCcC
Confidence            3455555 6888999999999998876    3  346777764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.42  E-value=0.0032  Score=52.96  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=34.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...+.++.+-.|+||||++..|+..|.+ .|.+++.+|.|...
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~iR   92 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR   92 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHHT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHhh
Confidence            3345566788999999999999999988 89999999877544

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.40  E-value=0.0033  Score=51.77  Aligned_cols=40  Identities=15%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+.++.+-.|+||||++..||..|.. .+.++.+++.|.
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-~~~d~~v~s~D~   73 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVFNVGE   73 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeEEecccH
Confidence            5567777899999999999999999988 899999998885

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=96.40  E-value=0.0037  Score=50.56  Aligned_cols=74  Identities=18%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             eecCceeeccccCCccc-ccCCCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      |.|...+..+.+...+. +..+.+|.|.|++-   .-|+||||++..|+..|.+ .|+++.+-   .+.||+.=.||+..
T Consensus        20 e~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKG   95 (543)
T 3do6_A           20 YPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNR-IGKKSIVT---LREPSLGPTLGLKG   95 (543)
T ss_dssp             EEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCHHHHHHSCC
T ss_pred             HhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHHh-cCCeeEEE---EecCCCCCcCCccc
Confidence            44555555544433221 12345788877764   5699999999999999999 99998764   46788888898876


Q ss_pred             CC
Q 030973           85 KP   86 (168)
Q Consensus        85 ~~   86 (168)
                      ..
T Consensus        96 GA   97 (543)
T 3do6_A           96 GA   97 (543)
T ss_dssp             ST
T ss_pred             cc
Confidence            54

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.39  E-value=0.0039  Score=44.49  Aligned_cols=37  Identities=30%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +..|++ .+..|+||||++..|+..+.. .+..|..+..
T Consensus         9 ~~~I~l-~G~~GsGKsT~~~~L~~~l~~-~~~~v~~~~~   45 (215)
T 1nn5_A            9 GALIVL-EGVDRAGKSTQSRKLVEALCA-AGHRAELLRF   45 (215)
T ss_dssp             CCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEeeC
Confidence            344555 677899999999999999998 8988866543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.38  E-value=0.0029  Score=52.72  Aligned_cols=38  Identities=29%  Similarity=0.257  Sum_probs=32.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~   71 (168)
                      .+.++.+-.|+||||++..|+..|.. .| .++.++|.|.
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D~  435 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGDT  435 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECcHH
Confidence            44555788899999999999999998 77 8999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.35  E-value=0.0038  Score=47.85  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHH-HhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la-~~~g~rVlliD~D   70 (168)
                      +.+.+ .+..|+|||+++..+|..+. + .|.+|+.+.+.
T Consensus       153 ~~lll-~G~~GtGKT~La~aia~~~~~~-~g~~v~~~~~~  190 (308)
T 2qgz_A          153 KGLYL-YGDMGIGKSYLLAAMAHELSEK-KGVSTTLLHFP  190 (308)
T ss_dssp             CEEEE-ECSTTSSHHHHHHHHHHHHHHH-SCCCEEEEEHH
T ss_pred             ceEEE-ECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEHH
Confidence            44544 67789999999999999999 8 99999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.32  E-value=0.005  Score=43.73  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=27.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +.++.+..|+||||++..|+..+.. .| +|+..+.
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~~~   39 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIEL-KR-DVYLTEW   39 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT-TS-CEEEEET
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh-cC-CEEEecC
Confidence            4455788999999999999999987 77 7765544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.22  E-value=0.01  Score=42.53  Aligned_cols=40  Identities=35%  Similarity=0.496  Sum_probs=32.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|++ .+..|+||||++..|+..+.. .|.++-.|..|..
T Consensus        22 g~~v~I-~G~sGsGKSTl~~~l~~~~~~-~g~~~g~v~~d~~   61 (208)
T 3c8u_A           22 RQLVAL-SGAPGSGKSTLSNPLAAALSA-QGLPAEVVPMDGF   61 (208)
T ss_dssp             CEEEEE-ECCTTSCTHHHHHHHHHHHHH-TTCCEEEEESGGG
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCceEEEecCCC
Confidence            667776 578899999999999999987 6777777777653

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.19  E-value=0.0054  Score=47.67  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~   72 (168)
                      .+..+.+.+|+||||++.++|...+..     .+.+|++||++..
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~  167 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT  167 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            455567888999999999999875431     2789999999864

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=96.19  E-value=0.0057  Score=53.09  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=37.0

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhC-----CCeEEEEe
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLD   68 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-----g~rVlliD   68 (168)
                      ++..++.|.|++...|+|||++++.|++.|++ +     |.||..+=
T Consensus        30 ~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~~-~~~~~~G~~V~~fK   75 (831)
T 4a0g_A           30 LPLNHPTYLIWSANTSLGKTLVSTGIAASFLL-QQPSSSATKLLYLK   75 (831)
T ss_dssp             EECSSCEEEEEESSSSSCHHHHHHHHHHHHHS-CSSCCTTCEEEEEE
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHHHHh-cccccCCceEEEEc
Confidence            34457899999999999999999999999999 8     99999886

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.17  E-value=0.0054  Score=46.90  Aligned_cols=43  Identities=35%  Similarity=0.419  Sum_probs=33.2

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHH--HhCCCeEEEEeCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYG   73 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la--~~~g~rVlliD~D~~~   73 (168)
                      ..+.+|+++ +..|+||||++..|+..+.  - .+.+|.+|++|-..
T Consensus        78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWP-EHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEecCCcc
Confidence            346777775 6789999999999998876  3 45679999888643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.17  E-value=0.0039  Score=43.77  Aligned_cols=39  Identities=15%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++++++++ ..|+||||++..|+..+.. .|.++-.|-.|.
T Consensus         2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg   40 (171)
T 2f1r_A            2 SLILSIVG-TSDSGKTTLITRMMPILRE-RGLRVAVVKRHA   40 (171)
T ss_dssp             -CEEEEEE-SCHHHHHHHHHHHHHHHHH-TTCCEEEEEC--
T ss_pred             ceEEEEEC-CCCCCHHHHHHHHHHHhhh-cCCceEEEEEcC
Confidence            56888877 7899999999999999998 887766565554

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.17  E-value=0.0059  Score=44.55  Aligned_cols=36  Identities=19%  Similarity=0.079  Sum_probs=29.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      -|-|+.+.=|+||||.....+..+.. +|++|+++-.
T Consensus        29 ~I~vitG~M~sGKTT~Llr~~~r~~~-~g~kvli~kp   64 (219)
T 3e2i_A           29 WIECITGSMFSGKSEELIRRLRRGIY-AKQKVVVFKP   64 (219)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-cCCceEEEEe
Confidence            35555666799999999999999988 9999999943

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.11  E-value=0.0036  Score=47.51  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+.++++.+|+||||++..|+..+    +...+.||+|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~D~~   69 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDNDTF   69 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECTHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechHh
Confidence            45677789999999999999987754    224678888753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.10  E-value=0.0071  Score=45.37  Aligned_cols=39  Identities=36%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC----------CCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----------QLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~----------g~rVlliD~D~   71 (168)
                      +.++++ .+.+|+||||++..++..++. .          +.+|++++++.
T Consensus        30 G~i~~i-~G~~GsGKTtl~~~l~~~~~~-g~~~~g~~~~~~~~v~~~~~e~   78 (279)
T 1nlf_A           30 GTVGAL-VSPGGAGKSMLALQLAAQIAG-GPDLLEVGELPTGPVIYLPAED   78 (279)
T ss_dssp             TSEEEE-EESTTSSHHHHHHHHHHHHHT-CCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHHhc-CCCcCCCccCCCccEEEEECCC
Confidence            555555 578899999999999997765 3          46788888765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.09  E-value=0.0031  Score=43.75  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=25.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++++-+|+||||++..|+..+    +...+.++.|
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~D   37 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVD   37 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc----CCCeEEeccc
Confidence            55668899999999999988765    3456666665

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.07  E-value=0.0076  Score=42.91  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +++|++ .+..|+||||++..|+..+.. .+..|.++.
T Consensus        10 ~~~I~l-~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~   45 (212)
T 2wwf_A           10 GKFIVF-EGLDRSGKSTQSKLLVEYLKN-NNVEVKHLY   45 (212)
T ss_dssp             SCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEe
Confidence            345555 677899999999999999988 888886554

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.04  E-value=0.0056  Score=50.27  Aligned_cols=39  Identities=8%  Similarity=0.036  Sum_probs=32.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH-hCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~-~~g~rVlliD~D~   71 (168)
                      .+.++.+-.|+||||++..||..|.. ..++.+-++|.|.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            34455778899999999999999974 2568888999997

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.01  E-value=0.0041  Score=47.73  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH-----------hCC----CeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS-----------KCQ----LKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~-----------~~g----~rVlliD~D~~   72 (168)
                      .+.++.+.+|+|||++|.++|...+.           ..|    .+|++||++..
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            35555678999999999999987531           135    79999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.98  E-value=0.007  Score=43.93  Aligned_cols=41  Identities=20%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~   72 (168)
                      +.++++ .+.+|+||||++..++...+..     .+.+|++++.+..
T Consensus        24 G~~~~i-~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~   69 (243)
T 1n0w_A           24 GSITEM-FGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT   69 (243)
T ss_dssp             TSEEEE-ECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             CeEEEE-ECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence            455555 5689999999999999864331     1679999999863

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.92  E-value=0.01  Score=45.88  Aligned_cols=42  Identities=29%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~   73 (168)
                      +.+|++ .+..|+||||++..|+..+... .+.+|.+|..|...
T Consensus        92 p~iigI-~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           92 PYIIGI-AGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            445665 6888999999999999888631 25689999998744

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.91  E-value=0.0057  Score=41.83  Aligned_cols=29  Identities=31%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +.++.+..|+||||++..|    .+ .|..++-+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L----~~-~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL----KE-RGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH----HH-TTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH----HH-CCCcEEEH
Confidence            4556789999999999888    45 67776554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.91  E-value=0.0064  Score=42.43  Aligned_cols=34  Identities=29%  Similarity=0.276  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.|.+ .+..|+||||++..||..+    |.  -++|.|.
T Consensus         5 ~~~i~l-~G~~GsGKst~a~~La~~l----~~--~~i~~d~   38 (185)
T 3trf_A            5 LTNIYL-IGLMGAGKTSVGSQLAKLT----KR--ILYDSDK   38 (185)
T ss_dssp             CCEEEE-ECSTTSSHHHHHHHHHHHH----CC--CEEEHHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHh----CC--CEEEChH
Confidence            455555 5679999999999998766    33  3456654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.86  E-value=0.013  Score=42.47  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+.++.+-.|+||||.+..|+..|.. .|.+|+....
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~~~   42 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQLTRE   42 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEEES
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcccccC
Confidence            34455788999999999999999998 9999987653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.85  E-value=0.009  Score=45.67  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ...+.+ .+..|+||||++..++..+.. .+.+++.++++.
T Consensus        37 ~~~lll-~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~~~~   75 (324)
T 1l8q_A           37 YNPIFI-YGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSADD   75 (324)
T ss_dssp             CSSEEE-ECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred             CCeEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEHHH
Confidence            344555 567899999999999999988 799999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.85  E-value=0.0066  Score=41.94  Aligned_cols=35  Identities=26%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+.++.+.+|+||||++..|+..  . .|  ...|+.|.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~--~-~~--~~~i~~d~   36 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK--N-PG--FYNINRDD   36 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH--S-TT--EEEECHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh--c-CC--cEEecHHH
Confidence            345666889999999999988872  2 33  55666654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.82  E-value=0.0076  Score=42.05  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=19.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|+ +.+..|+||||++..|+..+
T Consensus         6 ~~~I~-l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVF-VLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEE-EEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEE-EECCCCCCHHHHHHHHHHHh
Confidence            34444 46788999999999988765

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.80  E-value=0.006  Score=43.85  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHH-----HhCC-CeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALA-----SKCQ-LKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la-----~~~g-~rVlliD~D   70 (168)
                      ..|.++.+..|+|||+.|..++..++     + .| ++|.+..+|
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~-~g~r~v~~~~~~   48 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDE-NGIRRKVFTNIK   48 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCT-TSCCCCEEECCT
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccc-cCceEEEEecCC
Confidence            34667789999999999988877665     5 67 777667655

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.79  E-value=0.012  Score=40.58  Aligned_cols=39  Identities=31%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D   70 (168)
                      .+.+ ++.+..|+|||+++..++..+...      .+.+++.+++.
T Consensus        43 ~~~~-ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (195)
T 1jbk_A           43 KNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG   87 (195)
T ss_dssp             SCEE-EEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred             CCce-EEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence            3444 446888999999999999988651      26777777753

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.67  E-value=0.013  Score=48.68  Aligned_cols=33  Identities=42%  Similarity=0.496  Sum_probs=29.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +.++.+.+|+||||++..++..+.. .|++|+++
T Consensus       206 ~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~  238 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLC  238 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEe
Confidence            5666889999999999999999999 99999987

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.63  E-value=0.018  Score=41.12  Aligned_cols=33  Identities=36%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++-+--|+||||.+..|+..|.+ .|.+|++...
T Consensus         4 ~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tre   36 (197)
T 3hjn_A            4 TFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE   36 (197)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEC
Confidence            44678899999999999999999 9999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.61  E-value=0.0056  Score=45.37  Aligned_cols=39  Identities=21%  Similarity=0.357  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.+.++.+.+|+||||++..|+..+    +..+.++|.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~r   69 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSFR   69 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecHHHH
Confidence            34556668899999999999988755    3356788998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.58  E-value=0.0085  Score=45.57  Aligned_cols=42  Identities=26%  Similarity=0.162  Sum_probs=30.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC--CeEE-EEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ--LKVG-LLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVl-liD~D~~~   73 (168)
                      .+.+|++ .+..|+||||++..|+..+.. .|  .++. +|..|...
T Consensus        30 ~~~ii~I-~G~sGsGKSTla~~L~~~l~~-~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           30 CPLFIFF-SGPQGSGKSFTSIQIYNHLME-KYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             SCEEEEE-ECCTTSSHHHHHHHHHHHHHH-HHGGGSCEEEEEGGGGB
T ss_pred             CCeEEEE-ECCCCCCHHHHHHHHHHHhhh-cCCCCceEEEecccccc
Confidence            3556666 678899999999999999986 44  4444 44888643

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=95.57  E-value=0.039  Score=43.07  Aligned_cols=38  Identities=16%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..+.|.+++..-.+||||++..|.+.+.+ +|.++-.+-
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~-~G~~a~~~~  188 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKL-RGWRSKFLA  188 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHh-cCCcEEEEe
Confidence            47899999999999999999999999999 999988843

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.57  E-value=0.01  Score=41.45  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.++.+..|+||||++..|+..+
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            455567889999999999998766

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.55  E-value=0.0032  Score=44.98  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=28.6

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .++.+..|+||||++..|+..+.. .|.+|.++..
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~~-~g~~v~~~~~   36 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFRA-AGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHHE-EEEEEEEEES
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEee
Confidence            344678899999999999999988 8888888764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.53  E-value=0.015  Score=43.82  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..++.+..|+|||++|..+|..+.. .+.+++.+|+...
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~~   86 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEY   86 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGGC
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEeecccc
Confidence            3444677899999999999999988 7888999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.51  E-value=0.011  Score=40.57  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=23.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++.+..|+||||++..|+..+.    .  -++|.|.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~----~--~~i~~d~   34 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK----Y--PIIKGSS   34 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC----C--CEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----C--eeecCcc
Confidence            344578899999999999887653    2  3467765

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.49  E-value=0.017  Score=48.66  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++++.+.+|+|||++.+++...+.+ .|++||++-.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~  241 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAP  241 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence            7788899999999999999999999 9999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.46  E-value=0.011  Score=40.71  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=27.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~   69 (168)
                      .+.+ ++.+..|+|||+++..++..+.. .       +.+++.+++
T Consensus        43 ~~~v-ll~G~~G~GKT~la~~~~~~~~~-~~~~~~~~~~~~~~~~~   86 (187)
T 2p65_A           43 KNNP-ILLGDPGVGKTAIVEGLAIKIVQ-GDVPDSLKGRKLVSLDL   86 (187)
T ss_dssp             SCEE-EEESCGGGCHHHHHHHHHHHHHT-TCSCTTTTTCEEEEECH
T ss_pred             CCce-EEECCCCCCHHHHHHHHHHHHHh-cCCcchhcCCeEEEEeH
Confidence            3344 55788899999999999998865 3       566666654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.44  E-value=0.014  Score=45.40  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+.++++..|+||||+|..||..+    +  +.+|++|..
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l----~--~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKF----N--GEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence            3355567889999999999888765    2  688999965

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.40  E-value=0.012  Score=40.38  Aligned_cols=35  Identities=37%  Similarity=0.521  Sum_probs=24.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++|.+ .+..|+||||++..||..|    |.+  ++|+|.
T Consensus         6 ~~~~i~l-~G~~GsGKSTva~~La~~l----g~~--~id~D~   40 (168)
T 1zuh_A            6 HMQHLVL-IGFMGSGKSSLAQELGLAL----KLE--VLDTDM   40 (168)
T ss_dssp             --CEEEE-ESCTTSSHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred             ccceEEE-ECCCCCCHHHHHHHHHHHh----CCC--EEEChH
Confidence            4677777 5678999999999988776    334  456654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.39  E-value=0.014  Score=40.81  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.++.+..|+||||++..|+..+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            344557889999999999988765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.38  E-value=0.01  Score=44.02  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++.+..|+||||++..||..+    +.  .+|+.|.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~----~~--~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET----GW--PVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CC--CEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC----CC--eEEeccH
Confidence            34557889999999999998765    32  4567765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.29  E-value=0.015  Score=41.27  Aligned_cols=25  Identities=32%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.|++ .+..|+||||++..||..+
T Consensus        25 ~~~i~l-~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFL-TGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEE-ECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHc
Confidence            556655 6788999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.27  E-value=0.016  Score=41.07  Aligned_cols=35  Identities=31%  Similarity=0.312  Sum_probs=24.2

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..+++|++ .+..|+||||++..|+..+    |.  ..||+|
T Consensus        13 ~~~~~I~l-~G~~GsGKsT~~~~L~~~~----g~--~~i~~d   47 (203)
T 1ukz_A           13 DQVSVIFV-LGGPGAGKGTQCEKLVKDY----SF--VHLSAG   47 (203)
T ss_dssp             TTCEEEEE-ECSTTSSHHHHHHHHHHHS----SC--EEEEHH
T ss_pred             CCCcEEEE-ECCCCCCHHHHHHHHHHHc----Cc--eEEeHH
Confidence            34555555 6788999999999888654    43  445554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.23  E-value=0.02  Score=39.51  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=25.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|++ .+..|+||||++..|+..+    |  ..++|.|..
T Consensus         8 g~~i~l-~G~~GsGKSTl~~~l~~~~----g--~~~i~~d~~   42 (175)
T 1knq_A            8 HHIYVL-MGVSGSGKSAVASEVAHQL----H--AAFLDGDFL   42 (175)
T ss_dssp             SEEEEE-ECSTTSCHHHHHHHHHHHH----T--CEEEEGGGG
T ss_pred             CcEEEE-EcCCCCCHHHHHHHHHHhh----C--cEEEeCccc
Confidence            555555 6788999999999988765    3  356787754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.20  E-value=0.0078  Score=40.63  Aligned_cols=34  Identities=21%  Similarity=0.018  Sum_probs=27.5

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+..|+|||++|..++....+ .+...+ +++..
T Consensus        28 ll~G~~GtGKt~lA~~i~~~~~~-~~~~~v-~~~~~   61 (145)
T 3n70_A           28 WLYGAPGTGRMTGARYLHQFGRN-AQGEFV-YRELT   61 (145)
T ss_dssp             EEESSTTSSHHHHHHHHHHSSTT-TTSCCE-EEECC
T ss_pred             EEECCCCCCHHHHHHHHHHhCCc-cCCCEE-EECCC
Confidence            34678899999999999887776 677877 88764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.18  E-value=0.016  Score=40.98  Aligned_cols=25  Identities=40%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+.++.+..|+||||++..|+..+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344557889999999999998876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.17  E-value=0.016  Score=44.95  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=29.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhC--------CCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKC--------QLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~--------g~rVlliD~D   70 (168)
                      ..++.+.+|+|||+++..++..+.. .        +..++.+++.
T Consensus        47 ~vll~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFNEIEE-VKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH-HHHHSSSSTTCEEEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH-HhhhhcCCCCceEEEEECc
Confidence            4455788999999999999999877 5        7888888864

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.15  E-value=0.026  Score=45.42  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD~   69 (168)
                      ..++.+.+|+||||++..++..|.. .|. +|+++-.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~a~   82 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALIS-TGETGIILAAP   82 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEecC
Confidence            6667889999999999999999998 776 7877743

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.15  E-value=0.022  Score=42.01  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD   68 (168)
                      ++.|+| .+-.|+||||.+..|+..|.. .|.+ |.+.-
T Consensus        27 ~~~i~~-eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r   63 (236)
T 3lv8_A           27 AKFIVI-EGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR   63 (236)
T ss_dssp             CCEEEE-EESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence            345544 678899999999999999999 9999 65553

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=95.11  E-value=0.028  Score=46.42  Aligned_cols=41  Identities=29%  Similarity=0.398  Sum_probs=37.9

Q ss_pred             CeEEEEe-cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~-s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +|-|.|+ +..+++||+.+++.|++.|.+ +|.||..+-.||+
T Consensus         3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~-~g~~v~~~k~~py   44 (545)
T 1s1m_A            3 TNYIFVTGGVVSSLGKGIAAASLAAILEA-RGLNVTIMKLDPY   44 (545)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECC
T ss_pred             ceEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeeeecccc
Confidence            5789999 999999999999999999999 9999999988753

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.06  E-value=0.037  Score=40.75  Aligned_cols=38  Identities=24%  Similarity=0.153  Sum_probs=32.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +-.|-|+.+.-|+||||.+..++..+.. +|+||+++-.
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp   55 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKY   55 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEee
Confidence            3446676777789999999999999999 9999999873

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.04  E-value=0.015  Score=41.43  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=25.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+....+..|+||||++..|+..+    |  .-+||+|..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l----g--~~vid~D~~   46 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY----G--AHVVNVDRI   46 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc----C--CEEEECcHH
Confidence            3444446788999999998888754    4  456888764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.00  E-value=0.026  Score=41.46  Aligned_cols=41  Identities=32%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh----CCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~----~g~rVlliD~D~~   72 (168)
                      +.+|+++ +..|+||||++..|+..+...    ..+++.+++.|..
T Consensus        25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~   69 (245)
T 2jeo_A           25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF   69 (245)
T ss_dssp             SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred             CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence            6678875 678999999999998877431    1456778888753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.99  E-value=0.021  Score=41.84  Aligned_cols=36  Identities=19%  Similarity=0.126  Sum_probs=26.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC----CCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~----g~rVlliD~   69 (168)
                      .+.++.+-.|+||||.+..|+..|.. .    |.+|++.-.
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~-~~~~~g~~v~~~re   65 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVTRE   65 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHH-HHGGGTCCEEEEES
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh-hccccceeeeeecC
Confidence            34455789999999999999999988 7    999976643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.98  E-value=0.022  Score=44.81  Aligned_cols=35  Identities=29%  Similarity=0.183  Sum_probs=30.1

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+..|+||||++..++..+.. .|.+|+++|-+..
T Consensus        40 i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~   74 (392)
T 4ag6_A           40 ILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPERE   74 (392)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCC
T ss_pred             EEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcC
Confidence            3578899999999999998888 8999999987643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.97  E-value=0.011  Score=41.11  Aligned_cols=31  Identities=55%  Similarity=0.629  Sum_probs=23.0

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++.+..|+||||++..||..+.    ..  ++|.|.
T Consensus         5 I~l~G~~GsGKsT~a~~La~~lg----~~--~id~D~   35 (184)
T 2iyv_A            5 AVLVGLPGSGKSTIGRRLAKALG----VG--LLDTDV   35 (184)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT----CC--EEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC----CC--EEeCch
Confidence            34468899999999999988663    33  567664

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.94  E-value=0.026  Score=39.23  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++.+..|+||||++..||..+
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            34456889999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.94  E-value=0.015  Score=44.93  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=26.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+.++.+..|+||||++..||..+    +  ..+||+|.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l----~--~~iis~Ds   38 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADAL----P--CELISVDS   38 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS----C--EEEEEECT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc----C--CcEEeccc
Confidence            33455567889999999999888754    3  56788775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.91  E-value=0.042  Score=42.16  Aligned_cols=42  Identities=40%  Similarity=0.423  Sum_probs=32.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCC-CeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlliD~D~~   72 (168)
                      .+.+|++ .+..|+||||++..|+..+....| .+|.+|-.|..
T Consensus        89 ~g~ivgI-~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           89 VPFIIGV-AGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCEEEEE-ECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEE-ECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            3667777 578899999999999998875234 57888887764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.90  E-value=0.02  Score=44.19  Aligned_cols=39  Identities=21%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~   71 (168)
                      .+.+ ++.+.+|+||||++..++..+.. .      +..++.+++..
T Consensus        44 ~~~v-ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           44 PSNA-LLYGLTGTGKTAVARLVLRRLEA-RASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             CCCE-EECBCTTSSHHHHHHHHHHHHHH-HHHHHTCCEEEEEEETTT
T ss_pred             CCcE-EEECCCCCCHHHHHHHHHHHHHH-HHhccCCCeEEEEEECCc
Confidence            4444 45788999999999999999876 4      77888888754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.89  E-value=0.19  Score=39.28  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ...|++ .+..|+||||+...++..+....+.+++.++
T Consensus       123 ~g~i~I-~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          123 RGLVLV-TGPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             SEEEEE-ECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            444544 6788999999999999888773366776655

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.86  E-value=0.041  Score=42.59  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~D~~   72 (168)
                      .+.+ .+..|+||||++..++..+.. . +..++.+++...
T Consensus        46 ~~li-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~i~~~~~   84 (389)
T 1fnn_A           46 RATL-LGRPGTGKTVTLRKLWELYKD-KTTARFVYINGFIY   84 (389)
T ss_dssp             EEEE-ECCTTSSHHHHHHHHHHHHTT-SCCCEEEEEETTTC
T ss_pred             eEEE-ECCCCCCHHHHHHHHHHHHhh-hcCeeEEEEeCccC
Confidence            4544 788999999999999998877 6 688999997553

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.85  E-value=0.034  Score=43.23  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=25.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.++.+-.|+||||++..||..+      ..-+||+|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~q   75 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHF------PLEVINSDKMQ   75 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTS------CEEEEECCSST
T ss_pred             eEEEECCCCCCHHHHHHHHHHHC------CCcEEcccccc
Confidence            45557778999999998887644      34789999643

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.82  E-value=0.021  Score=45.83  Aligned_cols=38  Identities=16%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~   71 (168)
                      ..+. +.+.+|+||||++..+|..+.. .  +.+++.+++..
T Consensus       131 ~~ll-l~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~~  170 (440)
T 2z4s_A          131 NPLF-IYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK  170 (440)
T ss_dssp             CCEE-EECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHHH
T ss_pred             CeEE-EECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHH
Confidence            3444 4678899999999999999877 5  88899888653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.80  E-value=0.026  Score=40.11  Aligned_cols=38  Identities=42%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+|+++ +..|+||||++..|+..+..    ++.+++.|...
T Consensus         6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~   43 (211)
T 3asz_A            6 PFVIGIA-GGTASGKTTLAQALARTLGE----RVALLPMDHYY   43 (211)
T ss_dssp             CEEEEEE-ESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCB
T ss_pred             cEEEEEE-CCCCCCHHHHHHHHHHHhCC----CeEEEecCccc
Confidence            6677875 56799999999988886642    58889988744

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.77  E-value=0.02  Score=43.42  Aligned_cols=32  Identities=22%  Similarity=0.158  Sum_probs=24.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ..+..+.+|+|||++|..+|..+    |.+++.+++
T Consensus        38 ~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~   69 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVFRKM----GINPIMMSA   69 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence            44445888999999999998876    567777764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.75  E-value=0.019  Score=44.29  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC---CCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC---QLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~---g~rVlliD~D   70 (168)
                      .+.+. +.+.+|+||||++..++..+.. .   +..++.+++.
T Consensus        45 ~~~vl-i~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~i~~~   85 (386)
T 2qby_A           45 PNNIF-IYGLTGTGKTAVVKFVLSKLHK-KFLGKFKHVYINTR   85 (386)
T ss_dssp             CCCEE-EEECTTSSHHHHHHHHHHHHHH-HTCSSCEEEEEEHH
T ss_pred             CCeEE-EECCCCCCHHHHHHHHHHHHHH-HhcCCceEEEEECC
Confidence            44444 4678899999999999998877 4   7889988864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.75  E-value=0.022  Score=40.13  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=24.1

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++++.+|++ .+..|+||||++..||.     .|  ..++|+|.
T Consensus         5 ~~~~~~I~i-~G~~GsGKST~~~~La~-----~g--~~~id~d~   40 (203)
T 1uf9_A            5 AKHPIIIGI-TGNIGSGKSTVAALLRS-----WG--YPVLDLDA   40 (203)
T ss_dssp             -CCCEEEEE-EECTTSCHHHHHHHHHH-----TT--CCEEEHHH
T ss_pred             ccCceEEEE-ECCCCCCHHHHHHHHHH-----CC--CEEEcccH
Confidence            344666666 56789999999877765     34  34567764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.70  E-value=0.033  Score=45.03  Aligned_cols=39  Identities=15%  Similarity=0.101  Sum_probs=32.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++.+.++.+-.|+||||++..|+..+.. .+.++..++.|
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d   76 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVG   76 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecc
Confidence            4556667889999999999999999987 77777776644

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.69  E-value=0.036  Score=43.32  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             EEEEe--cCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973           33 VIAVA--SGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~--s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~   71 (168)
                      ...++  .+.+|+||||++..++..+.. .      +..++.+++..
T Consensus        51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   96 (412)
T 1w5s_A           51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEGLTVKQAYVNAFN   96 (412)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH-HHHHTTCCEEEEEEEGGG
T ss_pred             CEEEEeCcCcCCCCHHHHHHHHHHHHHH-HHhccCCceeEEEEECCC
Confidence            35555  889999999999999998876 3      67888998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.65  E-value=0.038  Score=40.04  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD   68 (168)
                      ++.|.| -+-.|+||||.+..|+..|.. .|. .|.+.-
T Consensus         3 g~~i~~-eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~r   39 (213)
T 4tmk_A            3 SKYIVI-EGLEGAGKTTARNVVVETLEQ-LGIRDMVFTR   39 (213)
T ss_dssp             CCEEEE-EECTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCcceeee
Confidence            344544 678899999999999999999 897 665543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.61  E-value=0.013  Score=45.46  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+++ ++.+.+|+|||++|.++|..  .  |.+|++|++
T Consensus       123 gsvi-LI~GpPGsGKTtLAlqlA~~--~--G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMV-IVTGKGNSGKTPLVHALGEA--L--GGKDKYATV  156 (331)
T ss_dssp             SEEE-EEECSCSSSHHHHHHHHHHH--H--HTTSCCEEE
T ss_pred             CcEE-EEEcCCCCCHHHHHHHHHHh--C--CCCEEEEEe
Confidence            3444 56899999999999999986  3  678999999

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.61  E-value=0.033  Score=41.99  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC----eEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~----rVlliD~D   70 (168)
                      ...+.+ .+.+|+|||++|..+|..+.. .+.    +++.+++.
T Consensus        67 ~~~vll-~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~  108 (309)
T 3syl_A           67 TLHMSF-TGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD  108 (309)
T ss_dssp             CCEEEE-EECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH
Confidence            344555 567899999999999999987 654    67777653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.61  E-value=0.021  Score=42.26  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=29.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++.+..|+|||++|..++..+.+ .+.+++.|++...
T Consensus        33 ll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~   68 (265)
T 2bjv_A           33 LIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAAL   68 (265)
T ss_dssp             EEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGS
T ss_pred             EEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCC
Confidence            34678899999999999988877 7788999987653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.61  E-value=0.027  Score=43.87  Aligned_cols=41  Identities=27%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH--hC---CCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS--KC---QLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~--~~---g~rVlliD~D~~   72 (168)
                      +.++.+ .+..|+||||++..++..++.  ..   |.+|++||....
T Consensus       131 G~i~~I-~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          131 QAITEV-FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             SEEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            566666 567899999999999987743  01   468999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.60  E-value=0.019  Score=39.38  Aligned_cols=34  Identities=32%  Similarity=0.502  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +++|.+ .+..|+||||++..||..+.    .  -++|.|.
T Consensus         2 ~~~I~l-~G~~GsGKsT~a~~La~~lg----~--~~id~d~   35 (173)
T 1e6c_A            2 TEPIFM-VGARGCGMTTVGRELARALG----Y--EFVDTDI   35 (173)
T ss_dssp             CCCEEE-ESCTTSSHHHHHHHHHHHHT----C--EEEEHHH
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHHhC----C--cEEcccH
Confidence            344555 56889999999999988763    3  3566663

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.57  E-value=0.024  Score=40.01  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=26.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++.|++ .+..|+||||++..|+..+   .|.+++.++..
T Consensus         4 ~~~I~l-~G~~GsGKsT~~~~L~~~l---~g~~~~~~~~~   39 (204)
T 2v54_A            4 GALIVF-EGLDKSGKTTQCMNIMESI---PANTIKYLNFP   39 (204)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHTS---CGGGEEEEESS
T ss_pred             CcEEEE-EcCCCCCHHHHHHHHHHHH---CCCceEEEecC
Confidence            445555 6788999999999988766   36777777643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.57  E-value=0.027  Score=44.81  Aligned_cols=41  Identities=22%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~   72 (168)
                      +.++.+ .+.+|+||||++.+++.....-     .+.+|++||....
T Consensus       178 Gei~~I-~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          178 GSITEL-FGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             TSEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             CcEEEE-EcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            445555 6788999999999988665430     2578999999753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.56  E-value=0.041  Score=40.06  Aligned_cols=26  Identities=35%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++++|.++ +.+|+||+|.|..||..+
T Consensus        28 k~kiI~ll-GpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVL-GGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence            36666664 788999999999998766

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.56  E-value=0.014  Score=41.22  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCe--EEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~r--VlliD~D   70 (168)
                      .++.+.+|+|||+++..++..+.. .+.+  ++.+++.
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~   77 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNAS   77 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccc
Confidence            455788899999999999998876 5544  4445543

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=94.55  E-value=0.14  Score=40.05  Aligned_cols=39  Identities=33%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ..++|.+++..-.+|||+++..|...+.+ .|.+|-.+-.
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~-~G~~v~~v~t  206 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALE-KGIKAGFLAT  206 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHh-cCCeEEEEcc
Confidence            47899999999999999999999999999 9999988554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.52  E-value=0.027  Score=40.39  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~   71 (168)
                      +.++++ .+..|+||||++..++..+...     .+.+++.++.+.
T Consensus        25 G~~~~l-~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           25 QAITEV-FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            566666 5678999999999998765430     256789998865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.50  E-value=0.022  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+..|+||||++..||..+
T Consensus         9 ~~~I~l-~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            9 TNIIFV-VGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             SCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            455555 5788999999999998766

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.48  E-value=0.025  Score=39.19  Aligned_cols=25  Identities=36%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.|. +.+..|+||||++..||..+
T Consensus        11 ~~~i~-i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNIL-LTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEE-EECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEE-EEeCCCCCHHHHHHHHHHHh
Confidence            34454 57889999999999988766

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.45  E-value=0.027  Score=40.44  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +..|.+ .+..|+||||++..||..+
T Consensus         4 ~~~I~l-~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            4 SIRMVL-IGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence            344444 6788999999999998866

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.43  E-value=0.032  Score=39.21  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=18.4

Q ss_pred             EecCCCCCChhhHHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      ++.+..|+||||++..|+..+.
T Consensus         4 ~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            4 AIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEECCCccCHHHHHHHHHHhcC
Confidence            4467889999999999998773

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.36  E-value=0.027  Score=39.46  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+..|+||||++..|+..+
T Consensus        12 ~~~I~l-~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFI-IGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            344555 6788999999999998876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.33  E-value=0.035  Score=37.88  Aligned_cols=22  Identities=32%  Similarity=0.170  Sum_probs=18.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.+..|+||||++..|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3446889999999999998866

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.33  E-value=0.02  Score=39.63  Aligned_cols=25  Identities=40%  Similarity=0.453  Sum_probs=15.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++| ++.+..|+||||++..|+..+
T Consensus         5 ~~~I-~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            5 SPII-WINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CCEE-EEECCC----CHHHHHHHHHS
T ss_pred             CeEE-EEECCCCCCHHHHHHHHHHhc
Confidence            4444 457889999999998887654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.31  E-value=0.043  Score=40.32  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.++.+..|+||||+|..|+..+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            344557889999999999998765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.31  E-value=0.028  Score=38.84  Aligned_cols=34  Identities=41%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.|.+ .+..|+||||++..||..+..      .++|.|.
T Consensus         4 m~~i~i-~G~~GsGKsTla~~La~~l~~------~~~d~d~   37 (175)
T 1via_A            4 AKNIVF-IGFMGSGKSTLARALAKDLDL------VFLDSDF   37 (175)
T ss_dssp             -CCEEE-ECCTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred             CCEEEE-EcCCCCCHHHHHHHHHHHcCC------CEEcccH
Confidence            344555 688999999999999876632      4567664

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.30  E-value=0.064  Score=38.52  Aligned_cols=31  Identities=23%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++=+--|+||||.+..|+..|.  .|.+|+..-
T Consensus         6 ~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~   36 (205)
T 4hlc_A            6 TFEGPEGSGKTTVINEVYHRLV--KDYDVIMTR   36 (205)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHT--TTSCEEEEE
T ss_pred             EEECCCCCcHHHHHHHHHHHHH--CCCCEEEee
Confidence            3467789999999999999995  588888764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.24  E-value=0.021  Score=39.24  Aligned_cols=33  Identities=36%  Similarity=0.453  Sum_probs=23.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++|++ .+..|+||||++..||..+    |.  ..+|.|.
T Consensus         5 ~~i~l-~G~~GsGKSTl~~~La~~l----~~--~~id~d~   37 (173)
T 1kag_A            5 RNIFL-VGPMGAGKSTIGRQLAQQL----NM--EFYDSDQ   37 (173)
T ss_dssp             CCEEE-ECCTTSCHHHHHHHHHHHT----TC--EEEEHHH
T ss_pred             CeEEE-ECCCCCCHHHHHHHHHHHh----CC--CEEeccH
Confidence            34555 6788999999998887754    32  4567663

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.22  E-value=0.053  Score=44.45  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++ .+..|+||||++..++..+.. .|.+++++....
T Consensus       281 G~i~~i-~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee  319 (525)
T 1tf7_A          281 DSIILA-TGATGTGKTLLVSRFVENACA-NKERAILFAYEE  319 (525)
T ss_dssp             SCEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred             CcEEEE-EeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence            455555 678899999999999999988 899998888764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.18  E-value=0.037  Score=42.59  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=25.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+.++++..|+||||++..||..+    +  .-+|.+|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~----~--~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL----P--VELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS----C--EEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC----C--CcEEeccc
Confidence            34455668889999999999988754    2  45777775

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.14  E-value=0.032  Score=40.81  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ++. .++.+-.|+||||++..|+..|....|.+|+++--.|..
T Consensus        21 ~~~-i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           21 SMF-ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             CEE-EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CeE-EEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            444 445788999999999999999964257888874455543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.11  E-value=0.076  Score=38.72  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +..| ++.+-.|+||||++..|+..+..  |.+|+...
T Consensus        26 g~~i-~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~   60 (229)
T 4eaq_A           26 SAFI-TFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR   60 (229)
T ss_dssp             CEEE-EEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred             CeEE-EEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence            4555 44688899999999999998864  66776543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.03  E-value=0.042  Score=39.20  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=17.7

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.+..|+||||+|..|+..+
T Consensus         4 ~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            4 VLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEECSTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            347889999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.97  E-value=0.051  Score=39.46  Aligned_cols=26  Identities=31%  Similarity=0.295  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+..|.+ .+..|+||||++..||..+
T Consensus        15 ~~~~I~l-~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVL-LGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            3445555 6778999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.95  E-value=0.11  Score=38.75  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++++ .+..|+||||+...++..+......+|++.+-+
T Consensus        25 g~~v~i-~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~   63 (261)
T 2eyu_A           25 MGLILV-TGPTGSGKSTTIASMIDYINQTKSYHIITIEDP   63 (261)
T ss_dssp             SEEEEE-ECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEE-ECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence            566666 566799999999999998876225677776644

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.89  E-value=0.065  Score=44.81  Aligned_cols=35  Identities=37%  Similarity=0.454  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEE
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLL   67 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlli   67 (168)
                      .+.++.+.+|+||||++..+...+.+.   .+.+|+++
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~  202 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  202 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence            456668889999999999999888741   45678775

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.85  E-value=0.043  Score=41.31  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+.+|++ .+..|+||||++..|+ .    .|..  +||+|.
T Consensus        73 ~~~~iI~I-~G~~GSGKSTva~~La-~----lg~~--~id~D~  107 (281)
T 2f6r_A           73 SGLYVLGL-TGISGSGKSSVAQRLK-N----LGAY--IIDSDH  107 (281)
T ss_dssp             TTCEEEEE-EECTTSCHHHHHHHHH-H----HTCE--EEEHHH
T ss_pred             CCCEEEEE-ECCCCCCHHHHHHHHH-H----CCCc--EEehhH
Confidence            34556665 6788999999999888 2    3544  467654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.84  E-value=0.041  Score=42.46  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=24.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++..|+||||++..||..+      ..-+|++|.
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds   36 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRL------NGEVISGDS   36 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT------TEEEEECCG
T ss_pred             EEEEECCCcCCHHHHHHHHHHhC------ccceeecCc
Confidence            45567888999999998887654      246788875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=93.84  E-value=0.042  Score=38.31  Aligned_cols=36  Identities=31%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+|++ .+..|+||||++..|+..    .+...+.+|.|.
T Consensus         9 g~~i~l-~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~   44 (191)
T 1zp6_A            9 GNILLL-SGHPGSGKSTIAEALANL----PGVPKVHFHSDD   44 (191)
T ss_dssp             TEEEEE-EECTTSCHHHHHHHHHTC----SSSCEEEECTTH
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHhc----cCCCeEEEcccc
Confidence            555555 678899999998888764    244466777763

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=93.78  E-value=0.11  Score=41.27  Aligned_cols=37  Identities=32%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +....++|+|++.   -||||++.-++..|.. .|++|.++
T Consensus        45 p~~~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~~g~~   81 (422)
T 1w78_A           45 LKPAPFVFTVAGT---NGKGTTCRTLESILMA-AGYKVGVY   81 (422)
T ss_dssp             SSCSSEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             cccCCcEEEEeCC---cChHHHHHHHHHHHHH-CCCCEEEE
Confidence            3445789999765   5899999999999999 99999765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.78  E-value=0.031  Score=46.31  Aligned_cols=40  Identities=38%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+|++ .+..|+||||++..||..+....|.++.++|.|.
T Consensus       369 G~iI~L-iG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          369 GFTVFF-TGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI  408 (552)
T ss_dssp             CEEEEE-EESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred             ceEEEE-ECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence            556666 5678999999999999999872345788899875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.73  E-value=0.048  Score=41.00  Aligned_cols=34  Identities=26%  Similarity=0.185  Sum_probs=24.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.+.++.+.+|+||||++..|+..+   .|  ...||.|
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~---~~--~~~i~~D   35 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN---PG--FYNINRD   35 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS---TT--EEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC---CC--cEEeccc
Confidence            3456668899999999998888732   23  4556665

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.70  E-value=0.052  Score=38.76  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+..|+||||++..|+..+
T Consensus         8 g~~i~l-~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVL-SGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEE-ECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEE-ECcCCCCHHHHHHHHHhhC
Confidence            556655 7888999999999887654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.65  E-value=0.1  Score=40.96  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhC-CCeEEEEeC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA   69 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-g~rVlliD~   69 (168)
                      .+.++++ .+..|+||||+...|+..+.. . ..+|+.++-
T Consensus       135 ~g~~i~i-vG~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~  173 (372)
T 2ewv_A          135 KMGLILV-TGPTGSGKSTTIASMIDYINQ-TKSYHIITIED  173 (372)
T ss_dssp             SSEEEEE-ECSSSSSHHHHHHHHHHHHHH-HSCCEEEEEES
T ss_pred             CCCEEEE-ECCCCCCHHHHHHHHHhhcCc-CCCcEEEEecc
Confidence            3566666 567799999999999998887 4 568878774

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.64  E-value=0.034  Score=39.94  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +..|.+ .+..|+||||++..||..+
T Consensus         5 ~~~I~l-~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLIL-IGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            344555 5788999999999998876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.63  E-value=0.05  Score=38.51  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=26.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +++|++ .+..|+||||++..|+..+    |  ...+|.|..
T Consensus        29 g~~i~l-~G~~GsGKSTl~~~L~~~~----g--~~~i~~d~~   63 (200)
T 4eun_A           29 TRHVVV-MGVSGSGKTTIAHGVADET----G--LEFAEADAF   63 (200)
T ss_dssp             CCEEEE-ECCTTSCHHHHHHHHHHHH----C--CEEEEGGGG
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHhh----C--CeEEccccc
Confidence            455655 5788999999999998766    3  356777753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.60  E-value=0.045  Score=38.58  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=18.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +|++ .+..|+||||++..||..+
T Consensus         4 ~i~i-~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTI-DGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEE-ECSTTSSHHHHHHHHHHHH
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHhc
Confidence            4555 6788999999999998765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.57  E-value=0.056  Score=37.76  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=23.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++.|.+ .+..|+||||++..||..+   .|  ..+||+|
T Consensus        10 ~~~I~l-~G~~GsGKSTv~~~La~~l---~g--~~~id~d   43 (184)
T 1y63_A           10 GINILI-TGTPGTGKTSMAEMIAAEL---DG--FQHLEVG   43 (184)
T ss_dssp             SCEEEE-ECSTTSSHHHHHHHHHHHS---TT--EEEEEHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHhc---CC--CEEeeHH
Confidence            445555 6788999999998887752   14  3456665

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=93.48  E-value=0.086  Score=44.19  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=28.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +.++.+.+|+|||++.+.+...+.+..+.+||++-.
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~  232 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP  232 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            556678899999999999998887635778887643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.43  E-value=0.38  Score=38.31  Aligned_cols=32  Identities=31%  Similarity=0.569  Sum_probs=24.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++..|+||||++..||..+..      -+|.+|.
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~------~iis~Ds   35 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNG------EVINSDS   35 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTE------EEEECCT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCC------eEeecCc
Confidence            4455778899999999999987732      4688885

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=93.41  E-value=0.058  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      ..++|++ .+-||+||||+|..++.
T Consensus       151 ~~~vv~I-~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFL-HGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred             CceEEEE-EcCCCCCHHHHHHHHHH
Confidence            3567766 57899999999998885

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=93.38  E-value=0.048  Score=38.53  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      ++|++ .+..|+||||++..|+.
T Consensus         2 ~~i~i-~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGL-TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEE-EECTTSSHHHHHHHHHH
T ss_pred             eEEEE-ECCCCcCHHHHHHHHHH
Confidence            45666 56789999999887776

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.32  E-value=0.069  Score=37.24  Aligned_cols=21  Identities=48%  Similarity=0.691  Sum_probs=17.2

Q ss_pred             EEEecCCCCCChhhHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~   54 (168)
                      +.++.+..|+||||++..|+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            445568899999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.31  E-value=0.038  Score=39.28  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+..|+||||++..|+..+
T Consensus        12 ~~~i~l-~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVV-CGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEE-ECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHhC
Confidence            344444 6788999999999998766

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.30  E-value=0.049  Score=38.86  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=16.9

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.+..|+||||+|..|+..+
T Consensus         4 ~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            4 VLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEECSTTSSHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            346889999999999887643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.30  E-value=0.067  Score=38.62  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=18.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.+..|+||||++..|+..+
T Consensus         3 I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4557889999999999998866

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=93.30  E-value=0.046  Score=38.65  Aligned_cols=31  Identities=23%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+..|+|||++|..||..     |.+|++|++..
T Consensus         3 lV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~   33 (180)
T 1c9k_A            3 LVTGGARSGKSRHAEALIGD-----APQVLYIATSQ   33 (180)
T ss_dssp             EEEECTTSSHHHHHHHHHCS-----CSSEEEEECCC
T ss_pred             EEECCCCCcHHHHHHHHHhc-----CCCeEEEecCC
Confidence            45678899999998887643     67899999965

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.26  E-value=0.039  Score=39.70  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +..|.+ .+..|+||||++..||..+
T Consensus         5 ~~~I~l-~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            5 PLKVMI-SGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             SCCEEE-EESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            444554 6678999999999999876

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=93.26  E-value=0.12  Score=41.24  Aligned_cols=36  Identities=31%  Similarity=0.345  Sum_probs=30.7

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ...++|+|++.   -||||++.-++..|.. .|++|.++-
T Consensus        37 ~~~~vI~VtGT---nGKtTT~~~l~~iL~~-~G~~vg~~~   72 (428)
T 1jbw_A           37 QQGRYIHVTGT---NGKGSAANAIAHVLEA-SGLTVGLYT   72 (428)
T ss_dssp             GSSCEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             hcCcEEEEECC---CChHHHHHHHHHHHHH-CCCCEEEEe
Confidence            34689999765   5899999999999999 999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.19  E-value=0.043  Score=39.64  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=19.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +..|++ .+..|+||||++..||..+
T Consensus         7 ~~~I~l-~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVI-MGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEE-EECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence            445555 6788999999999888644

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=93.10  E-value=0.15  Score=36.48  Aligned_cols=38  Identities=24%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++ |.|+.+.-|+||||.....+..+.. +|+||+++-..
T Consensus        20 g~-l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~   57 (195)
T 1w4r_A           20 GQ-IQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA   57 (195)
T ss_dssp             CE-EEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred             eE-EEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence            45 6666777789999888888888888 89999999743

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.00  E-value=0.12  Score=38.69  Aligned_cols=36  Identities=28%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.+.+ .+..|+|||++|..+|..+    +.+++.+++..
T Consensus        50 ~~~vll-~G~~GtGKT~la~~la~~l----~~~~~~i~~~~   85 (310)
T 1ofh_A           50 PKNILM-IGPTGVGKTEIARRLAKLA----NAPFIKVEATK   85 (310)
T ss_dssp             CCCEEE-ECCTTSSHHHHHHHHHHHH----TCCEEEEEGGG
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEcchh
Confidence            334544 5788999999999998876    55788888754

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=92.91  E-value=0.15  Score=38.13  Aligned_cols=41  Identities=5%  Similarity=-0.054  Sum_probs=33.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..++.+ ++.+|.||||++.+++..-++ +|.+++++-++...
T Consensus        21 gs~~li-~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~   61 (260)
T 3bs4_A           21 SLILIH-EEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPL   61 (260)
T ss_dssp             CEEEEE-ECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCH
T ss_pred             CcEEEE-EeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCH
Confidence            455555 666677777999999999999 99999999998644

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.88  E-value=0.072  Score=39.18  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=19.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+..+.+..|+||||++..||..+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            344457888999999999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.86  E-value=0.15  Score=37.26  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=25.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +-|. +.+.+|+|||++|..+|..+    +.+++.+++..
T Consensus        40 ~~vl-l~G~~GtGKT~la~~la~~~----~~~~~~~~~~~   74 (262)
T 2qz4_A           40 KGAL-LLGPPGCGKTLLAKAVATEA----QVPFLAMAGAE   74 (262)
T ss_dssp             CEEE-EESCTTSSHHHHHHHHHHHH----TCCEEEEETTT
T ss_pred             ceEE-EECCCCCCHHHHHHHHHHHh----CCCEEEechHH
Confidence            3444 46788999999999998754    45677777654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=92.82  E-value=0.12  Score=44.64  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +.++.+.+|+|||++...++..+.+..+.+|+++-
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a  407 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA  407 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence            56778899999999999999888763577888764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.81  E-value=0.092  Score=37.27  Aligned_cols=25  Identities=40%  Similarity=0.441  Sum_probs=20.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..++.+.+|+||||++..++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4455788899999999999988865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.81  E-value=0.079  Score=37.46  Aligned_cols=32  Identities=34%  Similarity=0.455  Sum_probs=22.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+|++ .+..|+||||++..||.     .|..  ++|+|.
T Consensus         3 ~~i~l-~G~~GsGKST~~~~La~-----lg~~--~id~d~   34 (206)
T 1jjv_A            3 YIVGL-TGGIGSGKTTIANLFTD-----LGVP--LVDADV   34 (206)
T ss_dssp             EEEEE-ECSTTSCHHHHHHHHHT-----TTCC--EEEHHH
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHH-----CCCc--ccchHH
Confidence            45555 57889999999877764     4544  457664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.74  E-value=0.084  Score=38.94  Aligned_cols=26  Identities=42%  Similarity=0.597  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+|++ .+..|+||||++..||..|
T Consensus        26 ~g~~I~I-~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           26 IAPVITV-DGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TSCEEEE-ECCTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEE-ECCCCCCHHHHHHHHHHhc
Confidence            3567777 4678999999999998543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=92.73  E-value=0.089  Score=37.67  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.|+ +++..|+||||++..|+..+
T Consensus        19 g~~iv-l~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLV-LIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEE-EECcCCCCHHHHHHHHHhhC
Confidence            45555 47889999999999888654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=92.70  E-value=0.074  Score=37.99  Aligned_cols=21  Identities=24%  Similarity=0.185  Sum_probs=17.6

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.+..|+||||++..|+..+
T Consensus         4 ~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            4 ILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEESTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHh
Confidence            446788999999999998865

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.68  E-value=0.09  Score=36.96  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+|++ .+..|+||||++..|+..+
T Consensus         7 g~ii~l-~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFII-SAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEE-ECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEE-ECcCCCCHHHHHHHHHhhC
Confidence            456666 5778999999998887653

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=92.67  E-value=0.13  Score=40.80  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      -+..|+|||++...+...+.. .|.+|+++|-.
T Consensus        59 ~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpk   90 (437)
T 1e9r_A           59 NGATGTGKSVLLRELAYTGLL-RGDRMVIVDPN   90 (437)
T ss_dssp             EECTTSSHHHHHHHHHHHHHH-TTCEEEEEEET
T ss_pred             ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            356789999998888888888 89999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=92.65  E-value=0.14  Score=43.63  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=20.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      ..+.|++++ .+|+||||++-+|...
T Consensus         9 ~~~~I~IiG-~~~~GKTTL~~~Ll~~   33 (704)
T 2rdo_7            9 RYRNIGISA-HIDAGKTTTTERILFY   33 (704)
T ss_pred             cccEEEEEC-CCCCCHHHHHHHHHHh
Confidence            366777765 9999999999999654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.64  E-value=0.096  Score=37.47  Aligned_cols=24  Identities=42%  Similarity=0.606  Sum_probs=19.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+|++ .+..|+||||++..|+..+
T Consensus         6 ~~i~i-~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITI-DGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            45666 5678999999999998765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=92.61  E-value=0.088  Score=36.61  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++++++ .+..|+||||++..|+..+
T Consensus         5 g~~i~i-~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVL-LGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence            445555 6788999999999988765

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=92.41  E-value=0.15  Score=40.85  Aligned_cols=35  Identities=23%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..++|+|++.   -||||++.-++..|.. .|++|.++-
T Consensus        51 ~~~vI~VTGT---nGKtTT~~~l~~iL~~-~G~~vg~~~   85 (442)
T 1o5z_A           51 EYKTIHIGGT---NGKGSVANMVSNILVS-QGYRVGSYY   85 (442)
T ss_dssp             SSEEEEEECS---SSHHHHHHHHHHHHHH-HTCCEEEEC
T ss_pred             cCCEEEEECC---cCHHHHHHHHHHHHHH-CCCCEEEEC
Confidence            4689999765   5899999999999999 999998763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=92.41  E-value=0.11  Score=39.94  Aligned_cols=40  Identities=10%  Similarity=0.013  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC------CCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~------g~rVlliD~D~   71 (168)
                      ++.+ ++++.+|+|||+++..++..+.+..      +.+++.|++-.
T Consensus        45 ~~~l-li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~   90 (318)
T 3te6_A           45 NKLF-YITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE   90 (318)
T ss_dssp             CCEE-EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred             CCeE-EEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence            4445 5588999999999999999997621      34677777644

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.39  E-value=0.11  Score=38.03  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+|++ .+..|+||||++..|+..+
T Consensus        27 ~~~i~l-~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVI-LGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            455665 5788999999999999655

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=92.31  E-value=0.12  Score=39.20  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=27.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.+.++++..|+|||+++..+|..+    +.+++.+++..
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~   83 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSD   83 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTT
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccc
Confidence            33456778889999999999887654    56787777643

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.25  E-value=0.14  Score=41.90  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+ ++.+..|+||||+|..+|..+    |..++.+++..
T Consensus        78 ~~l-LL~GppGtGKTtla~~la~~l----~~~~i~in~s~  112 (516)
T 1sxj_A           78 RAA-MLYGPPGIGKTTAAHLVAQEL----GYDILEQNASD  112 (516)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred             cEE-EEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence            444 457788999999999888755    77888888754

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=92.16  E-value=0.062  Score=40.87  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+..|+|||++|..++....+ .+.+.+.|++..
T Consensus        30 i~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~   63 (304)
T 1ojl_A           30 IHGDSGTGKELVARALHACSAR-SDRPLVTLNCAA   63 (304)
T ss_dssp             EESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSS
T ss_pred             EECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCC
Confidence            4678899999999999988777 788899998865

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=92.15  E-value=0.2  Score=42.79  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+ .+..|+|||++|..+|..+.. .+.+++.||+...
T Consensus       523 ~~Ll-~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~  560 (758)
T 3pxi_A          523 SFIF-LGPTGVGKTELARALAESIFG-DEESMIRIDMSEY  560 (758)
T ss_dssp             EEEE-ESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGG
T ss_pred             EEEE-ECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhc
Confidence            4544 577899999999999999987 8899999998653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.11  E-value=0.13  Score=36.77  Aligned_cols=30  Identities=40%  Similarity=0.491  Sum_probs=21.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++.+..|+||||++..|+.     .|.  .++|+|
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~-----lg~--~~id~D   35 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD-----LGI--NVIDAD   35 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-----TTC--EEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-----cCC--EEEEcc
Confidence            444478899999999887764     464  456664

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=91.95  E-value=0.23  Score=40.38  Aligned_cols=35  Identities=20%  Similarity=0.078  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..++|+|++.   .||||++.-++..|.. .|++|-++-
T Consensus       107 ~~~vI~VTGT---nGKTTT~~ml~~iL~~-~g~~~~~~g  141 (498)
T 1e8c_A          107 NLRLVGVTGT---NGKTTTTQLLAQWSQL-LGEISAVMG  141 (498)
T ss_dssp             SSEEEEEESS---SCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             cCeEEEEeCC---cChHHHHHHHHHHHHh-CCCCEEEEC
Confidence            4689999754   5899999999999999 999987663

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=91.94  E-value=0.29  Score=39.15  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ....++|.|++.   -||||++.-|+..|.. .|+||-++-
T Consensus        49 ~~~~~vI~VtGT---NGKgSt~~~l~~iL~~-~G~~vg~~t   85 (437)
T 3nrs_A           49 KPAPKIFTVAGT---NGKGTTCCTLEAILLA-AGLRVGVYS   85 (437)
T ss_dssp             CSSSEEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred             cccCCEEEEECC---cChHHHHHHHHHHHHH-CCCcEEEEC
Confidence            445789999755   5899999999999999 999997653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.93  E-value=0.081  Score=38.34  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.+.+|+||||+|..||..+
T Consensus        61 ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           61 LVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             EEEESCGGGCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4557899999999999999987

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=91.92  E-value=0.13  Score=36.90  Aligned_cols=21  Identities=43%  Similarity=0.420  Sum_probs=17.6

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++-+.+|+||+|.|..||..+
T Consensus         4 il~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            4 VFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEECSTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=91.91  E-value=0.079  Score=42.17  Aligned_cols=36  Identities=28%  Similarity=0.247  Sum_probs=25.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+.++.+-+|+||||++..|+..+    |  ...||.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~----~--~~~i~~D~~  292 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA----G--YVHVNRDTL  292 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG----T--CEECCGGGS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc----C--cEEEccchH
Confidence            44566668899999999998887533    2  355666653

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=91.84  E-value=0.16  Score=43.89  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.++.+.+|+|||++.+.+...+.+..+.+||++-..
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t  413 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS  413 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence            5566788999999999999888765357899887543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.82  E-value=0.11  Score=36.86  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=25.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|+++ +..|+||||++..|+..+     ..+.+|+.|..
T Consensus        21 ~~~i~i~-G~~GsGKSTl~~~L~~~~-----~~~~~i~~D~~   56 (207)
T 2qt1_A           21 TFIIGIS-GVTNSGKTTLAKNLQKHL-----PNCSVISQDDF   56 (207)
T ss_dssp             CEEEEEE-ESTTSSHHHHHHHHHTTS-----TTEEEEEGGGG
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHhc-----CCcEEEeCCcc
Confidence            5667764 677999999987766533     14778888864

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=91.71  E-value=0.14  Score=36.84  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=19.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|+| +++.|+||+|+|-.+...+
T Consensus        11 ~~II~i-tGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           11 RLVLLF-SGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             SEEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEE-ECCCCCChHHHHHHHHHHc
Confidence            455555 7899999999998876655

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=91.58  E-value=0.21  Score=36.90  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=25.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ...-.++.+..|+|||++|..+|..+    +.+++.+++
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~   97 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICS   97 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEEC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeC
Confidence            33344456788999999999998863    556666654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.55  E-value=0.13  Score=39.00  Aligned_cols=34  Identities=26%  Similarity=0.140  Sum_probs=26.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++.+..|+|||+++..++..+.    .+++.+++..
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~~   65 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINELN----LPYIYLDLRK   65 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT----CCEEEEEGGG
T ss_pred             cEEEECCCCCCHHHHHHHHHHhcC----CCEEEEEchh
Confidence            555678889999999999887653    3578888764

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=91.50  E-value=0.28  Score=40.33  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ..++|+|++.   .||||++.-++..|.. .|++|-++-.
T Consensus       145 ~~~vI~VTGT---nGKTTT~~ml~~iL~~-~G~~~g~~gs  180 (535)
T 2wtz_A          145 RLTVIGITGT---SGKTTTTYLVEAGLRA-AGRVAGLIGT  180 (535)
T ss_dssp             SSEEEEEESS---SCHHHHHHHHHHHHHH-TTCCEEEESS
T ss_pred             cceEEEeeCC---CChHHHHHHHHHHHHH-CCCCEEEECC
Confidence            4689999765   5899999999999999 9999887643

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=91.50  E-value=0.26  Score=40.04  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ...++|.|++..   ||||++.-|+..|.. .|+||-++
T Consensus        62 ~~~~vI~VtGTN---GKtST~~~l~~iL~~-~G~~vG~~   96 (487)
T 2vos_A           62 RSYPSIHIAGTN---GKTSVARMVDALVTA-LHRRTGRT   96 (487)
T ss_dssp             GSSCEEEEECSS---SHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             hcCeEEEEeCCC---CcHHHHHHHHHHHHH-cCCCeEEE
Confidence            447899997654   899999999999999 99999654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=91.50  E-value=0.17  Score=37.77  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        26 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~   61 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGR-----ATAELFAK-NGAYVVVADVNE   61 (277)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999998776     57788889 999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.48  E-value=0.12  Score=36.20  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+|++ .+..|+||||++..|+..+
T Consensus         6 g~~i~l-~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVL-SGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEE-ECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHhh
Confidence            455665 5678999999998887765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.39  E-value=0.22  Score=38.14  Aligned_cols=31  Identities=42%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      .++|+|++   --||||++.-++..|.. .|+++-
T Consensus       108 ~~~IaVTG---TnGKTTTt~ll~~iL~~-~g~~~~  138 (326)
T 3eag_A          108 HWVLGVAG---THGKTTTASMLAWVLEY-AGLAPG  138 (326)
T ss_dssp             SEEEEEES---SSCHHHHHHHHHHHHHH-TTCCCE
T ss_pred             CCEEEEEC---CCCHHHHHHHHHHHHHH-cCCCce
Confidence            68999975   46899999999999999 998864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=91.37  E-value=0.19  Score=39.11  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=26.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|.+ .+..|+|||++|..+|..+    +.+++.+++..
T Consensus        73 ~~ill-~Gp~GtGKT~la~~la~~l----~~~~~~~~~~~  107 (376)
T 1um8_A           73 SNILL-IGPTGSGKTLMAQTLAKHL----DIPIAISDATS  107 (376)
T ss_dssp             CCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEGGG
T ss_pred             CCEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEecchh
Confidence            34444 5778999999999988755    56777777654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=91.30  E-value=0.23  Score=43.12  Aligned_cols=39  Identities=28%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -.++.+..|+|||++|..+|..+.. .+.+++.||+....
T Consensus       590 ~vLl~Gp~GtGKT~lA~~la~~~~~-~~~~~i~i~~~~~~  628 (854)
T 1qvr_A          590 SFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEYM  628 (854)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcC-CCCcEEEEechhcc
Confidence            3444678899999999999999988 88899999987543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.28  E-value=0.084  Score=40.53  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=26.0

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++.+..|+||||++..+|..+.. .+.++.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~   84 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNA   84 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcC
Confidence            345778999999999999999866 444444444443

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.22  E-value=0.1  Score=42.23  Aligned_cols=41  Identities=12%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+++++ +..|+||||++..|+-.+....|++++.+|.|+.
T Consensus       138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~  178 (460)
T 2npi_A          138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ  178 (460)
T ss_dssp             CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc
Confidence            6777776 5679999999999998776623426567888764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=91.16  E-value=0.16  Score=41.90  Aligned_cols=41  Identities=17%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH---HHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL---ASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l---a~~~g~rVlliD~D~   71 (168)
                      ..++|+ +.+-||+||||+|..++...   .......|..++.+.
T Consensus       146 ~~~~v~-I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~  189 (591)
T 1z6t_A          146 EPGWVT-IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK  189 (591)
T ss_dssp             SCEEEE-EECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred             CCceEE-EEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence            355555 47889999999999987643   221333577777654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.14  E-value=0.25  Score=37.83  Aligned_cols=36  Identities=22%  Similarity=0.118  Sum_probs=27.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-|.+ .+.+|+|||++|..+|..+   .+..++.+++.
T Consensus        45 ~~~iLL-~GppGtGKT~la~ala~~~---~~~~~~~i~~~   80 (322)
T 1xwi_A           45 WRGILL-FGPPGTGKSYLAKAVATEA---NNSTFFSISSS   80 (322)
T ss_dssp             CSEEEE-ESSSSSCHHHHHHHHHHHT---TSCEEEEEECC
T ss_pred             CceEEE-ECCCCccHHHHHHHHHHHc---CCCcEEEEEhH
Confidence            355665 4788999999999998865   35677777764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.10  E-value=0.2  Score=39.99  Aligned_cols=39  Identities=28%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+|+| .+..|+||||+...++..+.. ...+|+.++-+.
T Consensus       167 ggii~I-~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~i  205 (418)
T 1p9r_A          167 HGIILV-TGPTGSGKSTTLYAGLQELNS-SERNILTVEDPI  205 (418)
T ss_dssp             SEEEEE-ECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSC
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccc
Confidence            455555 678899999999999988876 566788777544

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=91.09  E-value=0.18  Score=37.41  Aligned_cols=41  Identities=24%  Similarity=0.238  Sum_probs=32.9

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .....|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+...
T Consensus        10 ~~~~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~~   50 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGL-----AVVDALVR-YGAKVVSVSLDEKS   50 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCC--
T ss_pred             cCCCCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCchh
Confidence            3455889999999998886     57788999 99999999987644

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=90.98  E-value=0.17  Score=40.91  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDAD   70 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D   70 (168)
                      ++.+.+|+|||+++..+|..+...      .+.+++.+|+.
T Consensus       205 LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  245 (468)
T 3pxg_A          205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG  245 (468)
T ss_dssp             EEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence            446889999999999999998540      24555555554

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=90.88  E-value=0.19  Score=36.60  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=19.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .|..+++..|+||||++..||..|.
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            3445578899999999999997763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=90.71  E-value=0.16  Score=35.86  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      ++.+++ .+..|+||||+...|+..+.
T Consensus         4 g~~i~l-vGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVL-SGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEE-ECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhCc
Confidence            445555 57889999999999987663

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=90.65  E-value=0.14  Score=38.01  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-+.+ .+.+|+|||+++..+|..    .+.+++.+++.
T Consensus        51 ~~~~ll-~G~~GtGKT~la~~la~~----~~~~~~~v~~~   85 (285)
T 3h4m_A           51 PKGILL-YGPPGTGKTLLAKAVATE----TNATFIRVVGS   85 (285)
T ss_dssp             CSEEEE-ESSSSSSHHHHHHHHHHH----TTCEEEEEEGG
T ss_pred             CCeEEE-ECCCCCcHHHHHHHHHHH----hCCCEEEEehH
Confidence            344554 578899999999888764    45677776653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=90.65  E-value=0.22  Score=36.39  Aligned_cols=40  Identities=18%  Similarity=0.167  Sum_probs=31.6

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ....|++.|+++.||.|+     .+|..|++ .|.+|+++|-+...
T Consensus        19 ~~m~k~vlITGas~gIG~-----~la~~l~~-~G~~V~~~~r~~~~   58 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGA-----EVVKFFKS-KSWNTISIDFRENP   58 (251)
T ss_dssp             ---CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCCT
T ss_pred             cccCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCccc
Confidence            344688999999988776     67888999 99999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.60  E-value=0.14  Score=37.24  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++.|++ .+..|+||||++..|+..+
T Consensus         2 ~~~i~~-~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSI-EGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEE-EcCCCCCHHHHHHHHHHHc
Confidence            445555 5678999999999998877

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.56  E-value=0.27  Score=33.85  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.++.+..|+||||+.-.+...+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4555678899999999999887753

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=90.54  E-value=0.23  Score=39.59  Aligned_cols=31  Identities=16%  Similarity=0.066  Sum_probs=25.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQL   62 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~   62 (168)
                      .++.++++++ .|+||||++..+|...++ .+.
T Consensus       173 rGQr~~IvG~-sG~GKTtLl~~Iar~i~~-~~~  203 (422)
T 3ice_A          173 RGQRGLIVAP-PKAGKTMLLQNIAQSIAY-NHP  203 (422)
T ss_dssp             TTCEEEEECC-SSSSHHHHHHHHHHHHHH-HCT
T ss_pred             CCcEEEEecC-CCCChhHHHHHHHHHHhh-cCC
Confidence            3778888765 589999999999999987 543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=90.49  E-value=0.19  Score=35.49  Aligned_cols=22  Identities=41%  Similarity=0.454  Sum_probs=17.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .|+++.+|+||||++..|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999988775543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.49  E-value=0.2  Score=38.29  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++++ ++..|+||||+...|...  . .|+|+.+|.-|...
T Consensus         4 i~v~~i-~G~~GaGKTTll~~l~~~--~-~~~~~aVi~~d~G~   42 (318)
T 1nij_A            4 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGE   42 (318)
T ss_dssp             EEEEEE-EESSSSSCHHHHHHHHHS--C-CCCCEEEECSSCCS
T ss_pred             ccEEEE-EecCCCCHHHHHHHHHhh--c-CCCcEEEEEecCcc
Confidence            556666 567899999999887764  2 68899999877643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=90.42  E-value=0.2  Score=36.67  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=24.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      -+.+ .+..|+||||++..+|..+    +.+++.+++.
T Consensus        47 ~vll-~G~~GtGKT~la~~la~~~----~~~~~~i~~~   79 (257)
T 1lv7_A           47 GVLM-VGPPGTGKTLLAKAIAGEA----KVPFFTISGS   79 (257)
T ss_dssp             EEEE-ECCTTSCHHHHHHHHHHHH----TCCEEEECSC
T ss_pred             eEEE-ECcCCCCHHHHHHHHHHHc----CCCEEEEeHH
Confidence            3444 5788999999999998765    4456666654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=90.41  E-value=0.23  Score=39.85  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=24.7

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +-+.+ .+.+|+|||++|..+|..+..  +...+.+++
T Consensus        64 ~~iLl-~GppGtGKT~la~ala~~l~~--~~~~~~~~~   98 (456)
T 2c9o_A           64 RAVLL-AGPPGTGKTALALAIAQELGS--KVPFCPMVG   98 (456)
T ss_dssp             CEEEE-ECCTTSSHHHHHHHHHHHHCT--TSCEEEEEG
T ss_pred             CeEEE-ECCCcCCHHHHHHHHHHHhCC--CceEEEEeH
Confidence            44555 678999999999999998753  244444443

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=90.14  E-value=0.52  Score=38.73  Aligned_cols=42  Identities=26%  Similarity=0.349  Sum_probs=38.3

Q ss_pred             CeEEEEecCC-CCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~k-gG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +|-|.|+++- +|.||-.+|+.++..|.. +|.||-++-+||.-
T Consensus         3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~-~g~~v~~~k~dpyl   45 (535)
T 3nva_A            3 NKYIVVTGGVLSSVGKGTLVASIGMLLKR-RGYNVTAVKIDPYI   45 (535)
T ss_dssp             CEEEEEECCCSTTTTHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred             ceEEEEeCccccCcchHHHHHHHHHHHHH-CCceEEEEecCcce
Confidence            6788888866 999999999999999999 99999999999954

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=90.09  E-value=0.2  Score=38.40  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ..+++ .+..|+||||++..+|..+
T Consensus        52 ~~~ll-~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLL-AGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEE-ESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEE-ECCCCCcHHHHHHHHHHHh
Confidence            44544 6788999999999999877

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.09  E-value=0.23  Score=36.00  Aligned_cols=25  Identities=36%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+|++ .+..|+||||++..||..+
T Consensus        16 ~~~i~i-~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAI-DGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEE-ECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHc
Confidence            556666 5678999999999888755

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=89.99  E-value=0.096  Score=39.46  Aligned_cols=34  Identities=35%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~   69 (168)
                      .++.+.+|+||||++..++..+.. .+.  .++.+++
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~   84 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNA   84 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEET
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeec
Confidence            455778899999999999998865 332  3555543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=89.92  E-value=0.37  Score=36.25  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.+.+ .+..|+|||++|..++..+    +.++..+++..
T Consensus        39 ~~vll-~G~~GtGKT~la~~i~~~~----~~~~~~~~~~~   73 (324)
T 1hqc_A           39 EHLLL-FGPPGLGKTTLAHVIAHEL----GVNLRVTSGPA   73 (324)
T ss_dssp             CCCEE-ECCTTCCCHHHHHHHHHHH----TCCEEEECTTT
T ss_pred             CcEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEeccc
Confidence            34444 6788999999999998765    45677777654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=89.88  E-value=0.25  Score=36.81  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+...
T Consensus        31 l~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~~   69 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGA-----AIAEGLAG-AGAHVILHGVKPGS   69 (275)
T ss_dssp             CTTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSTTT
T ss_pred             CCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCHHH
Confidence            34789999999888776     47788889 99999999987643

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=89.80  E-value=0.27  Score=38.06  Aligned_cols=35  Identities=34%  Similarity=0.396  Sum_probs=25.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+.|.+ .+.+|+|||++|..+|..+    +.+.+.+++-
T Consensus        51 ~~~vll-~GppGtGKT~la~~ia~~~----~~~~~~~~~~   85 (363)
T 3hws_A           51 KSNILL-IGPTGSGKTLLAETLARLL----DVPFTMADAT   85 (363)
T ss_dssp             CCCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred             CCeEEE-ECCCCCCHHHHHHHHHHHc----CCCEEEechH
Confidence            344555 5778999999999988765    5567777653

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=89.75  E-value=0.32  Score=42.24  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHh------CCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~------~g~rVlliD~D~   71 (168)
                      +..+.+|+|||+++..+|..+...      .+.+++.+|+..
T Consensus       195 lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~  236 (854)
T 1qvr_A          195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS  236 (854)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred             EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence            345788999999999999998651      277888888743

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=89.70  E-value=0.26  Score=35.44  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=17.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      .+.|++ .+..|+||||+|..|+.
T Consensus        34 g~~ilI-~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLI-TGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEE-ECCCTTTTHHHHHHHHT
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHH
Confidence            455555 67889999998877654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=89.62  E-value=0.15  Score=36.24  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=17.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++.+..|+||||++..|+..+
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            34457788999999998887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=89.58  E-value=0.31  Score=34.00  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +++ .+..|+||||+...++..+.
T Consensus         3 i~l-~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            3 III-TGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEE-ECCTTSSHHHHHHHHHHHHG
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHhC
Confidence            444 57889999999999988773

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=89.53  E-value=0.16  Score=36.14  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=19.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      |..+++..|+||||++..||..|.
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            444478889999999999887663

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.52  E-value=0.22  Score=36.85  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=24.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +++|++ .+..|+||||++..||..+..      -++|.|.
T Consensus        48 g~~i~l-~G~~GsGKSTl~~~La~~lg~------~~~d~d~   81 (250)
T 3nwj_A           48 GRSMYL-VGMMGSGKTTVGKIMARSLGY------TFFDCDT   81 (250)
T ss_dssp             TCCEEE-ECSTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHhcCC------cEEeCcH
Confidence            445555 578899999999999987643      4666664

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=89.43  E-value=0.53  Score=37.58  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      .++|+|++.   -||||++.-++..|.. .|++|.+.
T Consensus       104 ~~vI~VTGT---nGKTTT~~ml~~iL~~-~g~~~~~~  136 (439)
T 2x5o_A          104 APIVAITGS---NGKSTVTTLVGEMAKA-AGVNVGVG  136 (439)
T ss_dssp             SCEEEEECS---SSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHh-cCCCEEEe
Confidence            678999754   5899999999999999 99988754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=89.41  E-value=0.36  Score=37.41  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=26.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+.|.+ .+..|+|||++|..+|..    .+..++.+++.
T Consensus       117 ~~~vLl-~GppGtGKT~la~aia~~----~~~~~~~i~~~  151 (357)
T 3d8b_A          117 PKGILL-FGPPGTGKTLIGKCIASQ----SGATFFSISAS  151 (357)
T ss_dssp             CSEEEE-ESSTTSSHHHHHHHHHHH----TTCEEEEEEGG
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHH----cCCeEEEEehH
Confidence            455555 577899999999988764    46677777764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.39  E-value=0.21  Score=38.49  Aligned_cols=26  Identities=31%  Similarity=0.587  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.+.+ .+.+|+|||++|..+|..+..
T Consensus        71 ~~vLl-~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLI-AGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEE-EESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEE-ECCCCCCHHHHHHHHHHHhcc
Confidence            45555 567899999999999998854

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=89.37  E-value=0.25  Score=35.76  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++++ .+..|+||||+...|+..+
T Consensus        16 G~ii~l-~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           16 GTLYIV-SAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCEEEE-ECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHhccC
Confidence            445555 6788999999998887755

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=89.30  E-value=0.21  Score=35.86  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++++++ .+..|+||||+...|+..+
T Consensus        23 G~~~~l-vGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVI-CGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence            566776 4678999999999888755

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=89.29  E-value=0.2  Score=37.36  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+.+.+ .+.+|+||||+|..+|..+    +...+.+++.
T Consensus        54 ~~~vll-~Gp~GtGKT~la~~la~~~----~~~~~~i~~~   88 (297)
T 3b9p_A           54 AKGLLL-FGPPGNGKTLLARAVATEC----SATFLNISAA   88 (297)
T ss_dssp             CSEEEE-ESSSSSCHHHHHHHHHHHT----TCEEEEEEST
T ss_pred             CCeEEE-ECcCCCCHHHHHHHHHHHh----CCCeEEeeHH
Confidence            445555 5788999999999887644    5567767664

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.28  E-value=0.14  Score=38.43  Aligned_cols=35  Identities=34%  Similarity=0.330  Sum_probs=25.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCC--CeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g--~rVlliD~D   70 (168)
                      .++.+.+|+|||+++..++..+.. .+  ..++-+++.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~   81 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNAS   81 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTT
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCc
Confidence            455788899999999999998854 33  235555543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=89.27  E-value=0.18  Score=37.05  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.+..|+|||++|..+|..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            3456889999999999999865

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.26  E-value=0.46  Score=38.07  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=26.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|.+ .+.+|+|||++|.++|..+    |...+.|++.
T Consensus       206 prGiLL-~GPPGtGKT~lakAiA~~~----~~~~~~v~~~  240 (428)
T 4b4t_K          206 PRGVLL-YGPPGTGKTMLVKAVANST----KAAFIRVNGS  240 (428)
T ss_dssp             CCEEEE-ESCTTTTHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHHh----CCCeEEEecc
Confidence            444555 5788999999999998765    5677777764

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=89.19  E-value=0.33  Score=40.42  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCC----CeEEEEeCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQ----LKVGLLDAD   70 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g----~rVlliD~D   70 (168)
                      +.+.+|+|||++..+-+.++.. .+    .++|++-..
T Consensus        27 V~a~aGsGKT~~l~~ri~~l~~-~~~~~~~~iL~ltft   63 (647)
T 3lfu_A           27 VLAGAGSGKTRVLVHRIAWLMS-VENCSPYSIMAVTFT   63 (647)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHH-TSCCCGGGEEEEESS
T ss_pred             EEECCCCCHHHHHHHHHHHHHH-hCCCChhhEEEEecc
Confidence            3466899999999888877776 43    689998764

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=89.19  E-value=0.41  Score=39.24  Aligned_cols=32  Identities=41%  Similarity=0.454  Sum_probs=27.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      ..++|+|++.   -||||++.-++..|.. .|+++.
T Consensus       121 ~~~vIaVTGT---nGKTTTt~li~~iL~~-~G~~~~  152 (524)
T 3hn7_A          121 SRHVIAVAGT---HGKTTTTTMLAWILHY-AGIDAG  152 (524)
T ss_dssp             GSEEEEEECS---SCHHHHHHHHHHHHHH-TTCCCE
T ss_pred             cCcEEEEECC---CCHHHHHHHHHHHHHH-cCCCce
Confidence            3689999765   4899999999999999 998764

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=89.17  E-value=0.58  Score=37.74  Aligned_cols=38  Identities=26%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~D~~   72 (168)
                      .++|+|++.   -||||++.-++..|.. .|++ ++.+..+..
T Consensus       118 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~p~~~igg~~~  156 (475)
T 1p3d_A          118 RHGIAVAGT---HGKTTTTAMISMIYTQ-AKLDPTFVNGGLVK  156 (475)
T ss_dssp             SEEEEEESS---SCHHHHHHHHHHHHHH-TTCCCEEEEEEEET
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHh-CCCCCEEEECCccc
Confidence            578888755   5899999999999999 9986 666766553

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=89.11  E-value=0.29  Score=36.22  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      -|++.|+++.+|.|+.     +|..|++ .|.+|+++|.|.
T Consensus         2 nK~vlVTGas~GIG~a-----ia~~la~-~Ga~V~~~~~~~   36 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQ-----ICLDFLE-AGDKVCFIDIDE   36 (247)
T ss_dssp             CCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEecCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence            3789999999998884     6788999 999999999875

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=89.02  E-value=0.22  Score=35.75  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ||++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus         1 Mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~   35 (230)
T 3guy_A            1 MSLIVITGASSGLGA-----ELAKLYDA-EGKATYLTGRSE   35 (230)
T ss_dssp             --CEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred             CCEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            468999998888776     56778888 999999998775

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=88.97  E-value=0.34  Score=35.22  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ||++.|+++.||.|+.     +|..|++ .|.+|++++-+..
T Consensus         1 mk~vlVTGas~gIG~~-----~a~~l~~-~G~~V~~~~r~~~   36 (257)
T 1fjh_A            1 MSIIVISGCATGIGAA-----TRKVLEA-AGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCch
Confidence            4689999988887775     6778888 9999999987753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=88.97  E-value=0.38  Score=32.94  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++++. +..|+||||+...++..+
T Consensus        33 Ge~v~L~-G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLN-GDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence            6777775 567999999999999988

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=88.96  E-value=0.31  Score=35.27  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         3 ~k~vlVTGas~GIG~-----a~a~~l~~-~G~~V~~~~r~~   37 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGR-----ALTIGLVE-RGHQVSMMGRRY   37 (235)
T ss_dssp             CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            578999999998887     57788899 999999998875

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.93  E-value=0.37  Score=35.19  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=30.9

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..-..|++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus        15 ~~~~~k~vlVTGas~gIG~~-----~a~~l~~-~G~~V~~~~r~~   53 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRA-----VADVLSQ-EGAEVTICARNE   53 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             hccCCCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEcCCH
Confidence            34457899999999988875     6778888 999999998664

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=88.89  E-value=0.27  Score=35.93  Aligned_cols=36  Identities=19%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ||++.|+++.||.|+.     +|..|++ .|.+|+++|-+..
T Consensus         1 Mk~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~~   36 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMG-----SALRLSE-AGHTVACHDESFK   36 (254)
T ss_dssp             -CEEEESSTTSTTHHH-----HHHHHHH-TTCEEEECCGGGG
T ss_pred             CeEEEEeCCCchHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence            4689999999999985     7778888 9999999987653

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=88.84  E-value=0.48  Score=35.15  Aligned_cols=31  Identities=16%  Similarity=0.051  Sum_probs=24.5

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCC-CeEEEE
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQ-LKVGLL   67 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g-~rVlli   67 (168)
                      +....-|+|||.++..++..+.. .+ .+||+|
T Consensus       132 ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil  163 (282)
T 1rif_A          132 ILNLPTSAGRSLIQALLARYYLE-NYEGKILII  163 (282)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEE
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEE
Confidence            34788899999999888887665 44 488888

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=88.83  E-value=0.36  Score=35.60  Aligned_cols=23  Identities=30%  Similarity=0.309  Sum_probs=17.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      .+|+++ ++.|+||||++..|+..
T Consensus         2 ~~i~lt-G~~~sGK~tv~~~l~~~   24 (241)
T 1dek_A            2 KLIFLS-GVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHHHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHh
Confidence            567774 68999999999877653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=88.83  E-value=0.36  Score=36.00  Aligned_cols=36  Identities=28%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        28 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~   63 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGL-----AVARRLAD-EGCHVLCADIDG   63 (277)
T ss_dssp             TTCEEEETTTTSTHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            4689999999999887     57788889 999999999764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=88.71  E-value=0.3  Score=37.21  Aligned_cols=34  Identities=24%  Similarity=0.179  Sum_probs=24.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+-|.+ .+.+|+|||++|..+|..+    +.+++.|++
T Consensus        51 ~~~vLl-~GppGtGKT~la~aia~~~----~~~~~~v~~   84 (322)
T 3eie_A           51 TSGILL-YGPPGTGKSYLAKAVATEA----NSTFFSVSS   84 (322)
T ss_dssp             CCEEEE-ECSSSSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred             CCeEEE-ECCCCCcHHHHHHHHHHHH----CCCEEEEch
Confidence            344555 5778999999999888754    456666654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=88.65  E-value=0.27  Score=35.91  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=17.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++ .+..|+||||++..+|..+
T Consensus        52 ~ll-~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLL-VGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEE-ECCTTSSHHHHHHHHHHHT
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHh
Confidence            444 5788999999999988654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.60  E-value=0.31  Score=37.08  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=24.9

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK--CQLKVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlliD~   69 (168)
                      .++.+..|+||||++..+|..+...  ...++.-+++
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~   97 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA   97 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence            4557888999999999999988631  2345555544

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=88.58  E-value=0.4  Score=35.43  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+..
T Consensus        11 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~   46 (271)
T 3tzq_B           11 NKVAIITGACGGIGL-----ETSRVLAR-AGARVVLADLPET   46 (271)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTTS
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEcCCHH
Confidence            689999999988776     57788889 9999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=88.56  E-value=0.31  Score=35.22  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+..|++ -+..|+||||++..|+..     +.+|.+..-+
T Consensus        19 ~g~~i~i-~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~   53 (230)
T 2vp4_A           19 QPFTVLI-EGNIGSGKTTYLNHFEKY-----KNDICLLTEP   53 (230)
T ss_dssp             CCEEEEE-ECSTTSCHHHHHHTTGGG-----TTTEEEECCT
T ss_pred             CceEEEE-ECCCCCCHHHHHHHHHhc-----cCCeEEEecC
Confidence            3667776 577899999988776653     5567776654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=88.54  E-value=0.25  Score=36.49  Aligned_cols=38  Identities=16%  Similarity=0.028  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      -..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+..
T Consensus        25 l~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~   62 (260)
T 3gem_A           25 LSSAPILITGASQRVGL-----HCALRLLE-HGHRVIISYRTEH   62 (260)
T ss_dssp             --CCCEEESSTTSHHHH-----HHHHHHHH-TTCCEEEEESSCC
T ss_pred             CCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence            34678999998888776     57788899 9999999998764

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=88.52  E-value=0.4  Score=35.37  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|++.|-|..
T Consensus        11 GK~alVTGas~GIG~a-----ia~~la~-~Ga~Vv~~~~~~~   46 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAA-----IAMQFAE-LGAEVVALGLDAD   46 (242)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence            7899999999998875     6788999 9999999998864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=88.50  E-value=0.35  Score=37.11  Aligned_cols=25  Identities=40%  Similarity=0.441  Sum_probs=20.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..++.+..|+||||++..+|..+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455788899999999999988754

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=88.49  E-value=0.52  Score=38.01  Aligned_cols=37  Identities=27%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeE-EEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV-GLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rV-lliD~D~   71 (168)
                      .++|+|++.   -||||++.-++..|.. .|++| +++....
T Consensus       114 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~~~~~~~g~~  151 (469)
T 1j6u_A          114 KEEFAVTGT---DGKTTTTAMVAHVLKH-LRKSPTVFLGGIM  151 (469)
T ss_dssp             CCEEEEECS---SSHHHHHHHHHHHHHH-TTCCCEEECSSCC
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHH-cCCCceEEECCee
Confidence            578999765   5899999999999999 99886 5565554

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=88.48  E-value=0.68  Score=37.51  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~D~~   72 (168)
                      .++|+|++.   -||||++.-++..|.. .|++ ++.+..+..
T Consensus       119 ~~vI~VTGT---nGKTTTt~ml~~iL~~-~G~~p~~~igg~~~  157 (491)
T 2f00_A          119 RHGIAIAGT---HGKTTTTAMVSSIYAE-AGLDPTFVNGGLVK  157 (491)
T ss_dssp             SEEEEEESS---SCHHHHHHHHHHHHHH-TTCCCEEEEEEEET
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHh-CCCCCEEEECCeec
Confidence            578888755   5899999999999999 9986 666666553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=88.48  E-value=0.74  Score=36.88  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      .++|+|++.   -||||++.-++..|.. .|++|.+
T Consensus       112 ~~~IaVTGT---nGKTTTt~ml~~iL~~-~g~~~~~  143 (451)
T 3lk7_A          112 SQLIGITGS---NGKTTTTTMIAEVLNA-GGQRGLL  143 (451)
T ss_dssp             SEEEEEECS---SCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CCEEEEECC---CCHHHHHHHHHHHHHh-cCCCEEE
Confidence            588999765   4799999999999999 9988754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.47  E-value=0.56  Score=37.69  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|.++ +.+|+|||++|.++|..+    |...+.|++.
T Consensus       215 prGvLL~-GPPGtGKTllAkAiA~e~----~~~~~~v~~s  249 (437)
T 4b4t_L          215 PKGVLLY-GPPGTGKTLLAKAVAATI----GANFIFSPAS  249 (437)
T ss_dssp             CCEEEEE-SCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred             CCeEEEE-CCCCCcHHHHHHHHHHHh----CCCEEEEehh
Confidence            4556664 778999999999988765    5577777654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=88.39  E-value=0.4  Score=33.84  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQ   61 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g   61 (168)
                      ++++ -+..|+||||+...++..+.. .|
T Consensus         3 ~i~i-~G~nG~GKTTll~~l~g~~~~-~G   29 (189)
T 2i3b_A            3 HVFL-TGPPGVGKTTLIHKASEVLKS-SG   29 (189)
T ss_dssp             CEEE-ESCCSSCHHHHHHHHHHHHHH-TT
T ss_pred             EEEE-ECCCCChHHHHHHHHHhhccc-CC
Confidence            4555 478899999999999998885 78

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=88.33  E-value=0.27  Score=37.11  Aligned_cols=33  Identities=21%  Similarity=0.185  Sum_probs=22.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .+.|.+ .+..|+|||++|..+|..+    +...+.|+
T Consensus        49 ~~~vLL-~Gp~GtGKT~la~ala~~~----~~~~i~v~   81 (301)
T 3cf0_A           49 SKGVLF-YGPPGCGKTLLAKAIANEC----QANFISIK   81 (301)
T ss_dssp             CSEEEE-ECSSSSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred             CceEEE-ECCCCcCHHHHHHHHHHHh----CCCEEEEE
Confidence            445555 5788999999999888643    34455554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=88.30  E-value=0.54  Score=42.22  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHH--HHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVA--LASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~--la~~~g~rVlliD~D~~   72 (168)
                      .++|+| .+-||+||||+|..++..  ........++.++.+..
T Consensus       150 ~RVV~I-vGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~  192 (1221)
T 1vt4_I          150 AKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC  192 (1221)
T ss_dssp             SCEEEE-CCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred             CeEEEE-EcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence            566666 678999999999999853  23214557888888653

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=88.30  E-value=0.42  Score=34.91  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+..
T Consensus         7 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~   42 (257)
T 3tpc_A            7 SRVFIVTGASSGLGA-----AVTRMLAQ-EGATVLGLDLKPP   42 (257)
T ss_dssp             TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence            679999999988886     47788889 9999999998764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=88.27  E-value=0.41  Score=35.57  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      -..|++.|+++.+|.|+     .+|..|++ .|.+|+++|
T Consensus        29 l~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~   62 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGR-----AIAHGYAR-AGAHVLAWG   62 (273)
T ss_dssp             CTTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEc
Confidence            34789999999998886     57788899 999999998

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=88.22  E-value=0.36  Score=35.68  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        15 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   50 (266)
T 3p19_A           15 MKKLVVITGASSGIGE-----AIARRFSE-EGHPLLLLARRV   50 (266)
T ss_dssp             CCCEEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            3689999999999887     57788899 999999998764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=88.14  E-value=0.48  Score=37.90  Aligned_cols=36  Identities=22%  Similarity=0.118  Sum_probs=26.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-|.+ .+.+|+|||++|..+|..+   .+..++.|++.
T Consensus       167 ~~~vLL-~GppGtGKT~lA~aia~~~---~~~~~~~v~~~  202 (444)
T 2zan_A          167 WRGILL-FGPPGTGKSYLAKAVATEA---NNSTFFSISSS  202 (444)
T ss_dssp             CSEEEE-ECSTTSSHHHHHHHHHHHC---CSSEEEEECCC
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHHc---CCCCEEEEeHH
Confidence            455665 4788999999999998865   35567666654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.13  E-value=0.39  Score=35.58  Aligned_cols=35  Identities=31%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        10 gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~~~~   44 (287)
T 3pxx_A           10 DKVVLVTGGARGQGR-----SHAVKLAE-EGADIILFDICH   44 (287)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred             CCEEEEeCCCChHHH-----HHHHHHHH-CCCeEEEEcccc
Confidence            689999999988776     57888999 999999999774

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=88.01  E-value=0.35  Score=37.47  Aligned_cols=33  Identities=24%  Similarity=0.184  Sum_probs=23.8

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +-|.+ .+..|+|||++|..+|..+    +..++.|++
T Consensus        85 ~~iLL-~GppGtGKT~la~ala~~~----~~~~~~v~~  117 (355)
T 2qp9_X           85 SGILL-YGPPGTGKSYLAKAVATEA----NSTFFSVSS  117 (355)
T ss_dssp             CCEEE-ECSTTSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred             ceEEE-ECCCCCcHHHHHHHHHHHh----CCCEEEeeH
Confidence            34555 4788999999999998765    445665554

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=87.88  E-value=0.4  Score=34.94  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         6 gk~vlVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~   40 (247)
T 3rwb_A            6 GKTALVTGAAQGIGK-----AIAARLAA-DGATVIVSDINA   40 (247)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEECSCH
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999999988776     57788899 999999998765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=87.84  E-value=0.37  Score=34.81  Aligned_cols=36  Identities=31%  Similarity=0.276  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus        13 ~~k~vlITGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   48 (247)
T 3i1j_A           13 KGRVILVTGAARGIGA-----AAARAYAA-HGASVVLLGRTE   48 (247)
T ss_dssp             TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEecCH
Confidence            3678999999888877     46788888 999999998764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=87.73  E-value=0.45  Score=35.03  Aligned_cols=38  Identities=16%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..|++.|+++.||.|+     ++|..|++ .|.+|+++|-+...
T Consensus        27 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGA-----GLVRAYRD-RNYRVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChhh
Confidence            3689999999988886     57788889 99999999987643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=87.71  E-value=0.37  Score=34.86  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ++.|+| .+-.|+||||.+..|+..+..
T Consensus         5 g~~i~~-eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILI-EGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEE-EECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHhcc
Confidence            445555 678899999999999998854

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=87.70  E-value=0.44  Score=34.61  Aligned_cols=36  Identities=31%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         8 ~~k~vlITGas~giG~-----~~a~~l~~-~G~~V~~~~r~~   43 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQ-----AYAEALAR-EGAAVVVADINA   43 (253)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence            3689999999888776     67888999 999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=87.69  E-value=0.33  Score=43.16  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEeCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADV   71 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD~D~   71 (168)
                      ...++|++ .+-||+||||+|..++......   ....|+.++...
T Consensus       145 ~~~~~v~i-~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~  189 (1249)
T 3sfz_A          145 GEPGWVTI-YGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK  189 (1249)
T ss_dssp             TSCEEEEE-ECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred             CCCCEEEE-EeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence            34566666 6799999999999888764221   234677888765

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=87.67  E-value=0.43  Score=35.27  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        12 ~gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   47 (278)
T 3sx2_A           12 TGKVAFITGAARGQGR-----AHAVRLAA-DGADIIAVDLCD   47 (278)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHH-CCCeEEEEeccc
Confidence            3689999999998886     46788889 999999999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=87.66  E-value=0.44  Score=34.77  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        12 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   46 (252)
T 3f1l_A           12 DRIILVTGASDGIGR-----EAAMTYAR-YGATVILLGRNE   46 (252)
T ss_dssp             TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            689999999988876     56788888 999999998765

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=87.65  E-value=0.69  Score=36.12  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=26.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.|.+ .+..|+|||++|..+|..    .+..++.+++..
T Consensus       148 ~~~vLL-~GppGtGKT~la~aia~~----~~~~~~~v~~~~  183 (389)
T 3vfd_A          148 ARGLLL-FGPPGNGKTMLAKAVAAE----SNATFFNISAAS  183 (389)
T ss_dssp             CSEEEE-ESSTTSCHHHHHHHHHHH----TTCEEEEECSCC
T ss_pred             CceEEE-ECCCCCCHHHHHHHHHHh----hcCcEEEeeHHH
Confidence            345555 577899999999888653    577888888754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=87.65  E-value=0.49  Score=31.26  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=15.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      +.|+++ +.+|+||||+...+.
T Consensus         2 ~ki~v~-G~~~~GKSsli~~l~   22 (161)
T 2dyk_A            2 HKVVIV-GRPNVGKSSLFNRLL   22 (161)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHH
T ss_pred             CEEEEE-CCCCCCHHHHHHHHh
Confidence            346665 577999999987765

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=87.64  E-value=0.48  Score=34.26  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+...
T Consensus         7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~~   43 (241)
T 1dhr_A            7 ARRVLVYGGRGALGS-----RCVQAFRA-RNWWVASIDVVENE   43 (241)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHT-TTCEEEEEESSCCT
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHh-CCCEEEEEeCChhh
Confidence            578999998888776     47788889 99999999987643

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=87.63  E-value=0.43  Score=34.54  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .....|+|.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~   48 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGS-----AIARLLHK-LGSKVIISGSNE   48 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence            3445789999999988776     57778888 999999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.62  E-value=0.73  Score=34.46  Aligned_cols=37  Identities=16%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+..
T Consensus        46 ~gk~vlVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGR-----AVSIAFAK-EGANIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCch
Confidence            4689999999888776     57788889 9999999998753

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=87.61  E-value=0.45  Score=34.12  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         2 ~k~vlITGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   36 (235)
T 3l77_A            2 MKVAVITGASRGIGE-----AIARALAR-DGYALALGARSV   36 (235)
T ss_dssp             CCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999998888776     57788888 999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.59  E-value=0.3  Score=34.38  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV   64 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rV   64 (168)
                      ++-|.+ .+.+|+||||+|..|..     +|++.
T Consensus        16 G~gvli-~G~SGaGKStlal~L~~-----rG~~l   43 (181)
T 3tqf_A           16 KMGVLI-TGEANIGKSELSLALID-----RGHQL   43 (181)
T ss_dssp             TEEEEE-EESSSSSHHHHHHHHHH-----TTCEE
T ss_pred             CEEEEE-EcCCCCCHHHHHHHHHH-----cCCeE
Confidence            455555 67889999999877654     56653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.59  E-value=0.43  Score=35.85  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        27 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~~~   62 (299)
T 3t7c_A           27 EGKVAFITGAARGQGR-----SHAITLAR-EGADIIAIDVCK   62 (299)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeccc
Confidence            3689999999998886     57788999 999999999874

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.56  E-value=0.48  Score=34.09  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+...
T Consensus         3 ~k~vlITGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            3 SGKVIVYGGKGALGS-----AILEFFKK-NGYTVLNIDLSAND   39 (236)
T ss_dssp             CEEEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSCCT
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEecCccc
Confidence            578999998888776     57788899 99999999987643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=87.51  E-value=0.66  Score=35.20  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+..|+|||++|..+|..    .+.+.+.+++..
T Consensus        59 ll~G~~GtGKT~la~~ia~~----~~~~~~~~~~~~   90 (338)
T 3pfi_A           59 LFSGPAGLGKTTLANIISYE----MSANIKTTAAPM   90 (338)
T ss_dssp             EEECSTTSSHHHHHHHHHHH----TTCCEEEEEGGG
T ss_pred             EEECcCCCCHHHHHHHHHHH----hCCCeEEecchh
Confidence            44678899999999888654    455677776643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.45  E-value=0.52  Score=35.77  Aligned_cols=38  Identities=21%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|.+...
T Consensus        45 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~Vv~~~~~~~~   82 (317)
T 3oec_A           45 QGKVAFITGAARGQGR-----THAVRLAQ-DGADIVAIDLCRQQ   82 (317)
T ss_dssp             TTCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEECCCCC
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCeEEEEeccccc
Confidence            3689999999998876     57788889 99999999987543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.45  E-value=0.46  Score=34.79  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     ++|..|++ .|.+|+++|-+.
T Consensus         8 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   42 (259)
T 4e6p_A            8 GKSALITGSARGIGR-----AFAEAYVR-EGATVAIADIDI   42 (259)
T ss_dssp             TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999888776     57788889 999999998765

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=87.38  E-value=0.47  Score=34.25  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+..
T Consensus         2 ~k~vlVTGas~giG~-----~~a~~l~~-~G~~V~~~~r~~~   37 (239)
T 2ekp_A            2 ERKALVTGGSRGIGR-----AIAEALVA-RGYRVAIASRNPE   37 (239)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCH
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCHH
Confidence            468999999988877     57788888 9999999987753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=87.36  E-value=0.44  Score=31.47  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=15.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      .|++++ .+|+||||+...+..
T Consensus         5 ~i~v~G-~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            5 KLVVVG-AGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHH
T ss_pred             EEEEEC-CCCCCHHHHHHHHHh
Confidence            355555 599999999877753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=87.34  E-value=0.12  Score=38.13  Aligned_cols=26  Identities=27%  Similarity=0.174  Sum_probs=20.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .++.|+| -+..|+||||++..|+..+
T Consensus        23 ~~~~I~i-eG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISI-EGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEE-ECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEE-ECCCCCCHHHHHHHHHHhc
Confidence            3555555 6788999999999888766

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=87.30  E-value=0.42  Score=40.85  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             EecCCCCCChhhHHHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +..+.+|+|||++|..+|..+..
T Consensus       205 LL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          205 VLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             EEESCTTTTTHHHHHHHHHHHHS
T ss_pred             EEECCCCCCHHHHHHHHHHHHhc
Confidence            34678999999999999998843

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=87.28  E-value=0.69  Score=36.16  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ..|++ .+..|+||||++..||..+..
T Consensus        25 ~~i~l-~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           25 VCVIL-VGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             EEEEE-ECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEE-ECCCCCcHHHHHHHHHHHhCC
Confidence            34554 678999999999999987764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=87.27  E-value=0.41  Score=33.89  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++++ .+..|+||||+...|+-.+
T Consensus        20 Gei~~l-~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           20 GRVVVL-SGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCEEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence            567777 4678999999999888765

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=87.26  E-value=0.4  Score=35.48  Aligned_cols=38  Identities=29%  Similarity=0.447  Sum_probs=31.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+...
T Consensus        27 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGG-----AVVTALRA-AGARVAVADRAVAG   64 (266)
T ss_dssp             TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEECSSCCTT
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCHHH
Confidence            3689999999988776     57788899 99999999877643

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=87.23  E-value=0.8  Score=37.18  Aligned_cols=35  Identities=31%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCe-EEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~r-VlliD~   69 (168)
                      .++|+|++.   -||||++.-++..|.. .|++ +.++-.
T Consensus       122 ~~~IaVTGT---nGKTTTt~ml~~iL~~-~g~~~~~~~gg  157 (494)
T 4hv4_A          122 RHGIAVAGT---HGKTTTTAMLSSIYAE-AGLDPTFVNGG  157 (494)
T ss_dssp             SEEEEEECS---SSHHHHHHHHHHHHHH-TTCCCEEEEEE
T ss_pred             CCEEEEecC---CChHHHHHHHHHHHHh-cCCCCEEEECC
Confidence            578988754   5899999999999999 8875 444443

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=87.20  E-value=0.59  Score=36.80  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=19.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ   61 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g   61 (168)
                      ..++-+--|+||||++..|+..|.. .|
T Consensus        51 fIt~EG~dGsGKTT~~~~Lae~L~~-~g   77 (376)
T 1of1_A           51 RVYIDGPHGMGKTTTTQLLVALGSR-DD   77 (376)
T ss_dssp             EEEECSSTTSSHHHHHHHHHC-----CC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh-CC
Confidence            3444788899999999999999987 66

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=87.13  E-value=0.92  Score=38.67  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+ .+..|+|||++|..+|..+    +.+.+.+|+...
T Consensus       490 ~~ll-~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~  524 (758)
T 1r6b_X          490 SFLF-AGPTGVGKTEVTVQLSKAL----GIELLRFDMSEY  524 (758)
T ss_dssp             EEEE-ECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGC
T ss_pred             EEEE-ECCCCCcHHHHHHHHHHHh----cCCEEEEechhh
Confidence            4444 5778999999999999877    568888887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=87.13  E-value=0.88  Score=31.20  Aligned_cols=22  Identities=41%  Similarity=0.483  Sum_probs=16.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      ...|+++ +..|+||||+...|.
T Consensus        23 ~~~i~v~-G~~~~GKSsli~~l~   44 (195)
T 1svi_A           23 LPEIALA-GRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCEEEEE-EBTTSSHHHHHHHHH
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHh
Confidence            4455554 578999999988775

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=87.10  E-value=0.44  Score=34.87  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=30.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+..
T Consensus         7 ~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~   42 (252)
T 3h7a_A            7 NATVAVIGAGDYIGA-----EIAKKFAA-EGFTVFAGRRNGE   42 (252)
T ss_dssp             SCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESSGG
T ss_pred             CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCHH
Confidence            688999999988776     57788889 9999999998753

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=87.09  E-value=0.34  Score=35.00  Aligned_cols=34  Identities=32%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+-.|+++ +.-|+||||++..|+    + .|..  +||+|.
T Consensus         8 ~~~~iglT-GgigsGKStv~~~l~----~-~g~~--vidaD~   41 (210)
T 4i1u_A            8 HMYAIGLT-GGIGSGKTTVADLFA----A-RGAS--LVDTDL   41 (210)
T ss_dssp             SCCEEEEE-CCTTSCHHHHHHHHH----H-TTCE--EEEHHH
T ss_pred             ceeEEEEE-CCCCCCHHHHHHHHH----H-CCCc--EEECcH
Confidence            35567885 566899999987664    4 5655  567775

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=87.08  E-value=0.59  Score=34.43  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+++.|+++.||.|+.     +|..|++ .|.+|++++-+...
T Consensus         8 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~~~   44 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRA-----IAERFVD-EGSKVIDLSIHDPG   44 (264)
T ss_dssp             TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESSCCC
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEecCccc
Confidence            5789999999988874     6788889 99999999887643

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=87.08  E-value=0.54  Score=34.33  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|+++|-+..
T Consensus         6 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~   41 (256)
T 2d1y_A            6 GKGVLVTGGARGIGR-----AIAQAFAR-EGALVALCDLRPE   41 (256)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChh
Confidence            578999999888887     47788888 9999999987754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=87.07  E-value=0.5  Score=34.61  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         8 gk~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~   42 (255)
T 4eso_A            8 GKKAIVIGGTHGMGL-----ATVRRLVE-GGAEVLLTGRNE   42 (255)
T ss_dssp             TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999999998886     57788899 999999998764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=87.01  E-value=0.36  Score=36.05  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +++ .+.+|+||||++..+|..+    +...+.++..
T Consensus        47 vlL-~Gp~GtGKTtLakala~~~----~~~~i~i~g~   78 (274)
T 2x8a_A           47 VLL-AGPPGCGKTLLAKAVANES----GLNFISVKGP   78 (274)
T ss_dssp             EEE-ESSTTSCHHHHHHHHHHHT----TCEEEEEETT
T ss_pred             EEE-ECCCCCcHHHHHHHHHHHc----CCCEEEEEcH
Confidence            444 5788999999999888743    4456666653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.00  E-value=0.37  Score=36.81  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .++.+..|+||||++..+|..+-.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~   62 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFG   62 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            445778899999999999997643

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=87.00  E-value=0.47  Score=35.82  Aligned_cols=32  Identities=22%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++.+..|+||||++..++..    .+  ++.+++..
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~----~~--~~~~~~~~   64 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE----RP--GILIDCRE   64 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH----SS--EEEEEHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH----cC--cEEEEeec
Confidence            4555788999999999887654    33  88888753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=86.94  E-value=0.38  Score=35.66  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=17.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ++ +.+..|+||||++..++..+
T Consensus        76 vl-l~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VL-LVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EE-EECCTTSSHHHHHHHHHHHT
T ss_pred             EE-EECCCcChHHHHHHHHHHHc
Confidence            44 46788999999999988754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=86.94  E-value=0.51  Score=35.02  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     ++|..|++ .|.+|+++|-+.
T Consensus        10 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   45 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGK-----GVAAGLVA-AGASVMIVGRNP   45 (281)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999988876     57788889 999999998765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.87  E-value=1.3  Score=43.88  Aligned_cols=46  Identities=17%  Similarity=0.047  Sum_probs=37.7

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccC
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID   83 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~   83 (168)
                      -+..|+||||+-.-|+.++.+..|.++.....||-+-+...++|.-
T Consensus       912 VGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~  957 (3245)
T 3vkg_A          912 VGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSL  957 (3245)
T ss_dssp             ECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceee
Confidence            4677899999999999999884477888888888887777787743

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=86.85  E-value=0.46  Score=33.99  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .++..|++ .|.+|++++-+.
T Consensus         5 ~k~vlVtGasggiG~-----~~a~~l~~-~G~~V~~~~r~~   39 (234)
T 2ehd_A            5 KGAVLITGASRGIGE-----ATARLLHA-KGYRVGLMARDE   39 (234)
T ss_dssp             CCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            578999998888775     57778888 999999998764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=86.72  E-value=0.43  Score=35.51  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus        11 ~~k~vlITGas~GIG~-----~~a~~L~~-~G~~V~~~~r~~   46 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGF-----EICKQLSS-NGIMVVLTCRDV   46 (311)
T ss_dssp             -CCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCcEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999998877     57788888 999999998765

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=86.71  E-value=0.56  Score=34.09  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|+++|-+.
T Consensus         7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   41 (249)
T 2ew8_A            7 DKLAVITGGANGIGR-----AIAERFAV-EGADIAIADLVP   41 (249)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEcCCc
Confidence            578999999888877     46778888 999999998875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=86.71  E-value=0.34  Score=34.87  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=14.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH-HHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA-VAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA-~~l   56 (168)
                      +++|++ .+..|+||||++..|+ ..+
T Consensus        27 G~ii~l-~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVL-SSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEE-ECSCC----CHHHHHHC---
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhcCC
Confidence            567776 5678999999999888 554

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=86.70  E-value=0.5  Score=36.52  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=19.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQ   61 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g   61 (168)
                      ..++-+--|+||||++..|+..|.. .|
T Consensus         6 fI~~EG~dGsGKTT~~~~La~~L~~-~g   32 (331)
T 1e2k_A            6 RVYIDGPHGMGKTTTTQLLVALGSR-DD   32 (331)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC-----CC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh-CC
Confidence            4445778899999999999999987 66

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=86.67  E-value=0.36  Score=33.20  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=15.9

Q ss_pred             CeEEEEecCCCCCChhhHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVN   51 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~   51 (168)
                      +.++++ -+..|+||||++..
T Consensus         9 gei~~l-~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            9 LSLVVL-IGSSGSGKSTFAKK   28 (171)
T ss_dssp             SEEEEE-ECCTTSCHHHHHHH
T ss_pred             CEEEEE-ECCCCCCHHHHHHH
Confidence            666766 56789999999885

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.66  E-value=0.46  Score=37.78  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|.+ .+.+|+|||++|.++|..+    |...+.|++.
T Consensus       182 prGvLL-~GPPGTGKTllAkAiA~e~----~~~f~~v~~s  216 (405)
T 4b4t_J          182 PKGVIL-YGPPGTGKTLLARAVAHHT----DCKFIRVSGA  216 (405)
T ss_dssp             CCCEEE-ESCSSSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred             CCceEE-eCCCCCCHHHHHHHHHHhh----CCCceEEEhH
Confidence            344555 5778999999999888755    5577777654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=86.64  E-value=0.47  Score=35.43  Aligned_cols=35  Identities=31%  Similarity=0.342  Sum_probs=25.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~D   70 (168)
                      .++.+..|+|||+++..++..+.. .+.  .++.+++.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~   77 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNAS   77 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETT
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCc
Confidence            455678899999999999998854 332  35555554

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.62  E-value=0.43  Score=34.84  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus         6 ~~k~~lVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~   41 (250)
T 3nyw_A            6 QKGLAIITGASQGIGA-----VIAAGLAT-DGYRVVLIARSK   41 (250)
T ss_dssp             CCCEEEEESTTSHHHH-----HHHHHHHH-HTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            3689999999998886     57788888 899999998765

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=86.60  E-value=0.63  Score=33.86  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+++.|+++.||.|+.     +|..|++ .|.+|++++-+..
T Consensus         7 ~k~vlVTGas~giG~~-----ia~~l~~-~G~~V~~~~r~~~   42 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYA-----TALAFVE-AGAKVTGFDQAFT   42 (250)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCCC
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEeCchh
Confidence            5789999999988874     6788899 9999999987754

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.60  E-value=0.53  Score=34.94  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        11 ~k~~lVTGas~gIG~-----aia~~la~-~G~~V~~~~~~~   45 (286)
T 3uve_A           11 GKVAFVTGAARGQGR-----SHAVRLAQ-EGADIIAVDICK   45 (286)
T ss_dssp             TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred             CCEEEEeCCCchHHH-----HHHHHHHH-CCCeEEEEeccc
Confidence            689999999888776     57788999 999999999873

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=86.54  E-value=1.6  Score=33.61  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=28.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV   76 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l   76 (168)
                      ||+|+++++    |  .....+++.+.+ .|.+|+++|.|+..+..
T Consensus         1 MK~I~ilGg----g--~~g~~~~~~Ak~-~G~~vv~vd~~~~~~~~   39 (363)
T 4ffl_A            1 MKTICLVGG----K--LQGFEAAYLSKK-AGMKVVLVDKNPQALIR   39 (363)
T ss_dssp             CCEEEEECC----S--HHHHHHHHHHHH-TTCEEEEEESCTTCTTT
T ss_pred             CCEEEEECC----C--HHHHHHHHHHHH-CCCEEEEEeCCCCChhH
Confidence            577888753    2  345567777777 99999999999877553

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=86.49  E-value=0.45  Score=35.29  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++.+.
T Consensus        30 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~~~   65 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGA-----AIAKRLAL-EGAAVALTYVNA   65 (271)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCC
Confidence            4689999999988776     57888999 999999997654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.48  E-value=0.48  Score=38.02  Aligned_cols=35  Identities=23%  Similarity=0.118  Sum_probs=25.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|.+ .+.+|+|||++|.++|..+    |...+.|++.
T Consensus       215 prGvLL-yGPPGTGKTllAkAiA~e~----~~~f~~v~~s  249 (434)
T 4b4t_M          215 PKGALM-YGPPGTGKTLLARACAAQT----NATFLKLAAP  249 (434)
T ss_dssp             CCEEEE-ESCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred             CCeeEE-ECcCCCCHHHHHHHHHHHh----CCCEEEEehh
Confidence            455666 4778999999999888755    5567777653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.47  E-value=0.78  Score=33.68  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        11 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   45 (264)
T 3ucx_A           11 DKVVVISGVGPALGT-----TLARRCAE-QGADLVLAARTV   45 (264)
T ss_dssp             TCEEEEESCCTTHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CcEEEEECCCcHHHH-----HHHHHHHH-CcCEEEEEeCCH
Confidence            689999999999876     56788888 999999998764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=86.45  E-value=0.76  Score=33.46  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus         1 k~vlVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~   34 (248)
T 3asu_A            1 MIVLVTGATAGFGEC-----ITRRFIQ-QGHKVIATGRRQ   34 (248)
T ss_dssp             CEEEETTTTSTTHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CEEEEECCCChHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence            468899999999974     6788888 999999998764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=86.43  E-value=0.55  Score=33.80  Aligned_cols=36  Identities=28%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |++|.|+++.||.|+.     ++..|++ .|.+|.+++-+..
T Consensus         1 Mk~vlVtGasg~iG~~-----l~~~L~~-~g~~V~~~~r~~~   36 (255)
T 2dkn_A            1 MSVIAITGSASGIGAA-----LKELLAR-AGHTVIGIDRGQA   36 (255)
T ss_dssp             -CEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSS
T ss_pred             CcEEEEeCCCcHHHHH-----HHHHHHh-CCCEEEEEeCChh
Confidence            4678999888887764     6677888 8999999987753

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=86.41  E-value=0.6  Score=34.53  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        29 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGE-----ATVRRLHA-DGLGVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCh
Confidence            3689999999988776     47788888 999999998765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=86.40  E-value=0.8  Score=33.42  Aligned_cols=38  Identities=8%  Similarity=-0.157  Sum_probs=30.8

Q ss_pred             cCCCCeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           27 IDGVKDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        27 ~~~~~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .....|++.|+++.  +|.|+     .+|..|++ .|.+|++++-+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~-----~ia~~l~~-~G~~V~~~~r~   49 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAY-----GIAKACKR-EGAELAFTYVG   49 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHH-----HHHHHHHH-TTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCCCCcHHH-----HHHHHHHH-cCCCEEEEecc
Confidence            34457899999877  78776     57788899 99999999876

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=86.40  E-value=3.8  Score=33.63  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      .+.|+++ +..|+||||++-.|...
T Consensus        13 ~~~I~Ii-G~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           13 RRTFAII-SHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             EEEEEEE-ECTTSSHHHHHHHHHHS
T ss_pred             CCEEEEE-CCCCChHHHHHHHHHhh
Confidence            4556664 57899999999988753

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=86.35  E-value=0.55  Score=34.80  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         7 gKvalVTGas~GIG~a-----iA~~la~-~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRA-----IAKKFAL-NDSIVVAVELLE   41 (254)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence            7899999999998876     6778888 999999999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.34  E-value=0.57  Score=33.87  Aligned_cols=35  Identities=29%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus         5 ~k~vlITGas~gIG~-----~~a~~l~~-~G~~v~~~~r~~   39 (247)
T 3lyl_A            5 EKVALVTGASRGIGF-----EVAHALAS-KGATVVGTATSQ   39 (247)
T ss_dssp             TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999998888776     57888899 999999998765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=86.33  E-value=0.57  Score=34.85  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|.
T Consensus        28 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~~   61 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGL-----GIARALAA-SGFDIAITGI   61 (280)
T ss_dssp             CCCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEES
T ss_pred             CCCEEEEecCCCHHHH-----HHHHHHHH-CCCeEEEEeC
Confidence            3689999999988776     46778888 9999999986

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=86.24  E-value=0.79  Score=33.87  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+..
T Consensus         5 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGL-----AIALRAAR-DGANVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCCS
T ss_pred             CCcEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeccch
Confidence            3689999999988876     56788899 9999999998764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.23  E-value=0.75  Score=33.94  Aligned_cols=35  Identities=3%  Similarity=-0.094  Sum_probs=29.4

Q ss_pred             CeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.  ||.|+     .+|..|++ .|.+|++++-+.
T Consensus         6 ~k~vlVTGas~~~gIG~-----~~a~~l~~-~G~~V~~~~r~~   42 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAY-----GIAQSCFN-QGATLAFTYLNE   42 (275)
T ss_dssp             TCEEEEECCCSTTSHHH-----HHHHHHHT-TTCEEEEEESST
T ss_pred             CCEEEEECCCCCCcHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            5789999887  88776     57788999 999999998775

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=86.19  E-value=0.51  Score=34.94  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus         4 ~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~   38 (264)
T 3tfo_A            4 DKVILITGASGGIGE-----GIARELGV-AGAKILLGARRQ   38 (264)
T ss_dssp             TCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEeCCccHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            578999999988886     46788888 999999998764

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=86.13  E-value=0.6  Score=33.74  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus        11 ~k~vlITGasggiG~-----~la~~l~~-~G~~V~~~~r~~   45 (254)
T 2wsb_A           11 GACAAVTGAGSGIGL-----EICRAFAA-SGARLILIDREA   45 (254)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999998888776     57788888 999999998764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=86.13  E-value=0.6  Score=34.14  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         9 ~k~vlVTGas~giG~-----~ia~~l~~-~G~~V~~~~r~~   43 (260)
T 2ae2_A            9 GCTALVTGGSRGIGY-----GIVEELAS-LGASVYTCSRNQ   43 (260)
T ss_dssp             TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999988887     56778888 899999998764

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=86.10  E-value=0.52  Score=36.15  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=26.6

Q ss_pred             CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .+||+|=+ .-||+|||-++..|+..|.   ++++.+|.
T Consensus        36 vPVI~VGNitvGGTGKTP~vi~L~~~L~---~~~~~ils   71 (315)
T 4ehx_A           36 VPVISVGNLSVGGSGKTSFVMYLADLLK---DKRVCILS   71 (315)
T ss_dssp             SCEEEEEESBSSCCSHHHHHHHHHHHTT---TSCEEEEE
T ss_pred             CCEEEECCEEeCCCChHHHHHHHHHHHh---hcCceEEe
Confidence            67888744 3699999999999999884   34555553

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=86.04  E-value=0.94  Score=38.61  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=25.3

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhC-------CCeEEEEeC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKC-------QLKVGLLDA   69 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~-------g~rVlliD~   69 (168)
                      ++.+..|+|||+++..+|..+.. .       +.+++.+|+
T Consensus       211 lL~G~~GtGKT~la~~la~~l~~-~~v~~~~~~~~~~~~~~  250 (758)
T 1r6b_X          211 LLVGESGVGKTAIAEGLAWRIVQ-GDVPEVMADCTIYSLDI  250 (758)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHHH-TCSCGGGTTCEEEECCC
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHh-CCCChhhcCCEEEEEcH
Confidence            45788999999999999998865 3       455555554

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=86.03  E-value=1.6  Score=32.75  Aligned_cols=42  Identities=33%  Similarity=0.496  Sum_probs=37.6

Q ss_pred             CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +|-|.|+++ -+|.||-.+|+.+|..|.. +|.||-++-+||.-
T Consensus        23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~-~G~~Vt~~K~DPYl   65 (295)
T 2vo1_A           23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI   65 (295)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred             ceEEEEcCCcccccccHHHHHHHHHHHHH-CCCcceeeecccce
Confidence            788888764 6899999999999999999 99999999999954

>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}

Probab=86.03  E-value=3  Score=29.45  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CeEEEEecCCCCCChhhH-HHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC---CCCccc----cCceeecccCCe
Q 030973           31 KDVIAVASGKGGVGKSTT-AVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ---KPEVTK----DMKMVPIENYGV  102 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~-a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~~  102 (168)
                      .+.+.++++-||++|++. ...|+....+ .|++|.++--|...   ...++-..   ...+..    .... +.....+
T Consensus        50 ~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-~Gr~V~vLAp~~~s---~~~l~~~~~l~~~t~t~~~ll~~~~-~~tp~s~  124 (189)
T 2l8b_A           50 RPSLAIVSGQGGAAGQRERVAELVMMARE-QGREVQIIAADRRS---QMNMKQDERLSGELITGRRQLLEGM-AFTPGST  124 (189)
T ss_dssp             SCCEECCBCSSCSHHHHHHHHHHHHHHHH-TTCCEEEECSTTHH---HHHHSCTTTCSSCSSSTTTTTTTSC-CCCCCCE
T ss_pred             CCceEEEecccchHHHHHHHHHHHHHHHh-cCeEEEEEcCchHH---HHHHHhhcCcCcceeehhhhhcCCC-CCCCCCE
Confidence            556888899999999977 6667776667 99999999877532   11111110   000000    0000 0011222


Q ss_pred             eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCC-HHHHHHHhhccc
Q 030973          103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-DAQLTTTQTLQL  164 (168)
Q Consensus       103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~-~~~~~~~~~~~~  164 (168)
                      .++..            .+......+..+++..+..+--+|++|.....+ -..+.+++.-++
T Consensus       125 lIVD~------------AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~GnAl~vl~~agv  175 (189)
T 2l8b_A          125 VIVDQ------------GEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGV  175 (189)
T ss_dssp             EEEEE------------SSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCSHHHHHHHHHTTC
T ss_pred             EEEec------------hhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccCCCHHHHHHhCCC
Confidence            23321            234566777888887776778999999997432 345555555443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=86.01  E-value=0.69  Score=33.67  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+..
T Consensus        12 ~k~vlVTGasggiG~-----~~a~~l~~-~G~~V~~~~r~~~   47 (265)
T 2o23_A           12 GLVAVITGGASGLGL-----ATAERLVG-QGASAVLLDLPNS   47 (265)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTTS
T ss_pred             CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCcH
Confidence            578999998888776     57788888 9999999998763

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=85.92  E-value=0.63  Score=33.56  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=28.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         2 ~k~vlItGasggiG~-----~~a~~l~~-~G~~V~~~~r~~   36 (250)
T 2cfc_A            2 SRVAIVTGASSGNGL-----AIATRFLA-RGDRVAALDLSA   36 (250)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            468899998888776     56778888 999999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.87  E-value=0.73  Score=33.72  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             CCeEEEEecCCC-CCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKG-GVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kg-G~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.| |.|+     .+|..|++ .|.+|+++|-+.
T Consensus        21 ~~k~vlITGasg~GIG~-----~~a~~l~~-~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGS-----TTARRALL-EGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHH-----HHHHHHHH-CCCEEEEecCCH
Confidence            367899988765 7776     67788899 999999998765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=85.87  E-value=0.88  Score=33.72  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=29.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus        22 k~vlVTGas~gIG~a-----ia~~La~-~G~~V~~~~r~~   55 (272)
T 2nwq_A           22 STLFITGATSGFGEA-----CARRFAE-AGWSLVLTGRRE   55 (272)
T ss_dssp             CEEEESSTTTSSHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             cEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            789999999999985     6778888 999999998764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=85.86  E-value=0.63  Score=34.10  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   41 (262)
T 1zem_A            7 GKVCLVTGAGGNIGL-----ATALRLAE-EGTAIALLDMNR   41 (262)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999998887     47788889 999999998764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=85.86  E-value=0.63  Score=34.68  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+..
T Consensus         8 ~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGL-----AIAKRVAA-DGANVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHH-----HHHHHHHT-TTCEEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECChh
Confidence            3689999999988776     57888999 9999999998864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=85.85  E-value=0.54  Score=34.23  Aligned_cols=35  Identities=29%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         9 gk~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~   43 (248)
T 3op4_A            9 GKVALVTGASRGIGK-----AIAELLAE-RGAKVIGTATSE   43 (248)
T ss_dssp             TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            689999998888776     57788899 999999998764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=85.85  E-value=0.5  Score=35.55  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+..
T Consensus        40 ~~k~vlVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~   76 (293)
T 3rih_A           40 SARSVLVTGGTKGIGR-----GIATVFAR-AGANVAVAARSPR   76 (293)
T ss_dssp             TTCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSGG
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEECCHH
Confidence            4689999999888777     46788889 9999999997753

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=85.79  E-value=0.64  Score=34.02  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|+++|-+.
T Consensus        12 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   46 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGA-----AIARALDK-AGATVAIADLDV   46 (263)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999988877     46778888 999999998764

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=85.76  E-value=0.51  Score=34.89  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=29.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus         5 ~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~   39 (281)
T 3m1a_A            5 AKVWLVTGASSGFGR-----AIAEAAVA-AGDTVIGTARRT   39 (281)
T ss_dssp             CCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred             CcEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999998888777     57788888 999999998765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=85.74  E-value=0.7  Score=35.24  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+++++ +..|+||||++..|+..+
T Consensus       126 Ge~vaIv-GpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          126 KNCLAFI-GPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CSEEEEE-CSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHhhhc
Confidence            6778875 566999999999999887

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.69  E-value=0.43  Score=35.37  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        25 ~gk~~lVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~   60 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGR-----AMAEGLAV-AGARILINGTDP   60 (271)
T ss_dssp             TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEECCSCH
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999988876     57788899 999999988764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=85.66  E-value=0.84  Score=34.67  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         8 ~k~vlVTGas~gIG~-----~la~~l~~-~G~~Vv~~~r~~   42 (319)
T 3ioy_A            8 GRTAFVTGGANGVGI-----GLVRQLLN-QGCKVAIADIRQ   42 (319)
T ss_dssp             TCEEEEETTTSTHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEcCCchHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            678999999998776     57788888 999999998765

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=85.65  E-value=0.57  Score=34.25  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         5 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   39 (260)
T 2qq5_A            5 GQVCVVTGASRGIGR-----GIALQLCK-AGATVYITGRHL   39 (260)
T ss_dssp             TCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999998888877     56788888 999999998764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=85.63  E-value=0.65  Score=34.23  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        20 ~~k~~lVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   55 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGF-----GIAQGLAE-AGCSVVVASRNL   55 (267)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            4689999999988776     56778888 999999998764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=85.63  E-value=0.56  Score=34.23  Aligned_cols=39  Identities=15%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCC---CeEEEEeCCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQ---LKVGLLDADVY   72 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g---~rVlliD~D~~   72 (168)
                      .-.++++.|+++.||.|+     .+|..|++ .|   .+|++++-+..
T Consensus        18 ~~~~k~vlITGasggIG~-----~la~~L~~-~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGL-----GLVKALLN-LPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             --CCSEEEESCCSSHHHH-----HHHHHHHT-SSSCCSEEEEEESCTT
T ss_pred             CCCCCEEEEECCCCcHHH-----HHHHHHHh-cCCCCcEEEEEecChh
Confidence            344778999998888775     67788888 89   99999998764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=85.60  E-value=0.77  Score=33.62  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.||.|+.     +|..|++ .|.+|++++-+..
T Consensus        20 ~~k~vlVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLA-----IARAFAD-AGDKVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCChH
Confidence            36789999999988874     6778888 9999999987754

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*

Probab=85.50  E-value=1.5  Score=33.92  Aligned_cols=37  Identities=11%  Similarity=0.123  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |..|.|++. +|-|=-+-+..||..|.+ +|++|.++-.
T Consensus        20 m~rIl~~~~-~~~GHv~p~l~La~~L~~-~Gh~V~v~~~   56 (415)
T 3rsc_A           20 MAHLLIVNV-ASHGLILPTLTVVTELVR-RGHRVSYVTA   56 (415)
T ss_dssp             CCEEEEECC-SCHHHHGGGHHHHHHHHH-TTCEEEEEEC
T ss_pred             CCEEEEEeC-CCccccccHHHHHHHHHH-CCCEEEEEeC
Confidence            334555443 677888888999999999 9999999874

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=85.50  E-value=0.67  Score=34.02  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        13 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   47 (267)
T 1iy8_A           13 DRVVLITGGGSGLGR-----ATAVRLAA-EGAKLSLVDVSS   47 (267)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999999988887     46788888 999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=85.49  E-value=0.51  Score=34.48  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=20.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.+++++ +..|+||||+...++-.+.
T Consensus        31 Ge~~~i~-G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           31 GALVAVV-GQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTCSE
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCC
Confidence            6778875 5669999999888776553

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=85.46  E-value=0.56  Score=34.92  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+
T Consensus        25 ~k~~lVTGas~GIG~-----~ia~~la~-~G~~V~~~~r~   58 (281)
T 3v2h_A           25 TKTAVITGSTSGIGL-----AIARTLAK-AGANIVLNGFG   58 (281)
T ss_dssp             TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEECCC
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence            689999999988776     57788889 99999999873

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=85.45  E-value=0.58  Score=34.25  Aligned_cols=34  Identities=29%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      +.+++++ +..|+||||+...++-.+.- ..-+|.+
T Consensus        28 Ge~~~i~-G~nGsGKSTLl~~l~Gl~~p-~~G~i~~   61 (243)
T 1mv5_A           28 NSIIAFA-GPSGGGKSTIFSLLERFYQP-TAGEITI   61 (243)
T ss_dssp             TEEEEEE-CCTTSSHHHHHHHHTTSSCC-SBSCEEE
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence            7778775 67799999999888876544 3345554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.44  E-value=0.56  Score=34.47  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         9 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   44 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGR-----GIATVFAR-AGANVAVAGRST   44 (262)
T ss_dssp             TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999998888777     46778888 999999998765

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=85.38  E-value=0.68  Score=33.94  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..+++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus        15 ~~k~vlITGasggiG~-----~~a~~l~~-~G~~V~~~~r~~   50 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGE-----TTAKLFVR-YGAKVVIADIAD   50 (278)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             cCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCh
Confidence            3678999999988777     57778888 999999997654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=85.36  E-value=0.68  Score=33.69  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus         7 ~k~vlITGasggiG~-----~la~~l~~-~G~~V~~~~r~~   41 (264)
T 2pd6_A            7 SALALVTGAGSGIGR-----AVSVRLAG-EGATVAACDLDR   41 (264)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCh
Confidence            578999999888776     57788888 999999998764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=85.32  E-value=0.69  Score=34.16  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|+++|-+.
T Consensus         9 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   43 (270)
T 1yde_A            9 GKVVVVTGGGRGIGA-----GIVRAFVN-SGARVVICDKDE   43 (270)
T ss_dssp             TCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999888876     56778888 999999998764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=85.29  E-value=0.56  Score=34.74  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus        27 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~   62 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGR-----AIALELAR-RGAMVIGTATTE   62 (270)
T ss_dssp             TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999988876     57788899 999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=85.28  E-value=0.53  Score=34.34  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=23.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      +.+++++ +..|+||||+...++-.+.- ..-+|.+
T Consensus        31 Ge~~~ii-G~nGsGKSTLl~~l~Gl~~p-~~G~I~~   64 (235)
T 3tif_A           31 GEFVSIM-GPSGSGKSTMLNIIGCLDKP-TEGEVYI   64 (235)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHhcCCCC-CceEEEE
Confidence            6778885 57799999998887765543 2234444

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=85.27  E-value=0.6  Score=34.12  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus         6 ~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~v~~~~~~~   41 (264)
T 3i4f_A            6 FVRHALITAGTKGLGK-----QVTEKLLA-KGYSVTVTYHSD   41 (264)
T ss_dssp             CCCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred             ccCEEEEeCCCchhHH-----HHHHHHHH-CCCEEEEEcCCC
Confidence            4689999998888776     57788889 999999997654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=85.27  E-value=0.54  Score=34.77  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++..
T Consensus        26 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~Vv~~~~~   60 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGA-----AIAARLAS-DGFTVVINYAG   60 (267)
T ss_dssp             -CCEEEEESCSSHHHH-----HHHHHHHH-HTCEEEEEESS
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEcCC
Confidence            3689999999998887     57778888 89999988654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=85.23  E-value=0.83  Score=30.74  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.++.+..|+||||+.-++.+.|..
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5566778999999999999887743

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=85.23  E-value=0.69  Score=33.76  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         5 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   39 (254)
T 1hdc_A            5 GKTVIITGGARGLGA-----EAARQAVA-AGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999888877     46778888 999999998764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.22  E-value=0.61  Score=37.76  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++-|.+ .+.+|+|||++|.++|..+    |...+.|++.
T Consensus       243 prGILL-yGPPGTGKTlLAkAiA~e~----~~~fi~vs~s  277 (467)
T 4b4t_H          243 PKGILL-YGPPGTGKTLCARAVANRT----DATFIRVIGS  277 (467)
T ss_dssp             CSEEEE-CSCTTSSHHHHHHHHHHHH----TCEEEEEEGG
T ss_pred             CCceEe-eCCCCCcHHHHHHHHHhcc----CCCeEEEEhH
Confidence            455666 5778999999999888755    4566666653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=85.21  E-value=0.71  Score=33.48  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|+++|-+.
T Consensus        13 ~k~vlItGasggiG~-----~la~~l~~-~G~~V~~~~r~~   47 (260)
T 3awd_A           13 NRVAIVTGGAQNIGL-----ACVTALAE-AGARVIIADLDE   47 (260)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999998888775     57788888 899999998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=85.20  E-value=0.49  Score=38.02  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=18.6

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+.+ .+..|+||||+|..+|..+
T Consensus        51 ~~vLL-~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           51 HSMIL-WGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             CEEEE-ECSTTSSHHHHHHHHHHHT
T ss_pred             cEEEE-ECCCCCcHHHHHHHHHHHh
Confidence            34544 5788999999999988764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=85.16  E-value=0.66  Score=33.82  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+..
T Consensus         4 ~k~vlVTGas~giG~-----~ia~~l~~-~G~~V~~~~r~~~   39 (255)
T 2q2v_A            4 GKTALVTGSTSGIGL-----GIAQVLAR-AGANIVLNGFGDP   39 (255)
T ss_dssp             TCEEEESSCSSHHHH-----HHHHHHHH-TTCEEEEECSSCC
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCch
Confidence            578999998888777     57788888 9999999987653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=85.11  E-value=0.57  Score=33.50  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+++.|+++.||.|+     .++..|++ .|.+|++++-+..
T Consensus         2 ~k~vlVtGasggiG~-----~la~~l~~-~G~~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGR-----AAALALKA-RGYRVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHH-HTCEEEEEESSCC
T ss_pred             CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEccCcc
Confidence            468899998888775     56778888 8999999998764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.09  E-value=0.61  Score=34.50  Aligned_cols=35  Identities=20%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus        11 ~k~~lVTGas~GIG~a-----~a~~la~-~G~~V~~~~r~~   45 (277)
T 3tsc_A           11 GRVAFITGAARGQGRA-----HAVRMAA-EGADIIAVDIAG   45 (277)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEECCS
T ss_pred             CCEEEEECCccHHHHH-----HHHHHHH-cCCEEEEEeccc
Confidence            6899999999988864     6788889 999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=85.08  E-value=0.72  Score=31.57  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=16.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      .|+++ +.+|+||||+...|..
T Consensus        23 ki~vv-G~~~~GKSsli~~l~~   43 (190)
T 3con_A           23 KLVVV-GAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEE-CSTTSSHHHHHHHHHH
T ss_pred             EEEEE-CcCCCCHHHHHHHHHc
Confidence            34554 5699999999988864

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=85.06  E-value=0.46  Score=33.30  Aligned_cols=33  Identities=30%  Similarity=0.211  Sum_probs=23.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEE
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLL   67 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlli   67 (168)
                      +++...-|+|||.++...+..+...     .+.+++++
T Consensus        51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil   88 (216)
T 3b6e_A           51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL   88 (216)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence            3446788999999998888766441     15677776

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=85.06  E-value=0.69  Score=33.71  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         2 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   36 (256)
T 1geg_A            2 KKVALVTGAGQGIGK-----AIALRLVK-DGFAVAIADYND   36 (256)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            468999999888886     47788888 999999998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=85.05  E-value=0.7  Score=34.29  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++-+.
T Consensus        31 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~   66 (276)
T 3r1i_A           31 SGKRALITGASTGIGK-----KVALAYAE-AGAQVAVAARHS   66 (276)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999999998886     57788899 999999998865

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=85.04  E-value=0.58  Score=34.21  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=29.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         4 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   38 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGL-----GIATALAA-QGADIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEECCSC
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-cCCEEEEEeCCc
Confidence            578999988888776     57788889 999999998765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=85.03  E-value=0.73  Score=33.70  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   41 (263)
T 3ai3_A            7 GKVAVITGSSSGIGL-----AIAEGFAK-EGAHIVLVARQV   41 (263)
T ss_dssp             TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence            578999999888876     57778888 999999998764

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=85.03  E-value=1  Score=33.69  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=18.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      .|.+ .+.+|+|||++|..||..
T Consensus       106 ~~~l-~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A          106 TIWL-FGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             EEEE-ECSTTSSHHHHHHHHHHH
T ss_pred             EEEE-ECCCCCCHHHHHHHHHhh
Confidence            4555 568999999999999985

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=85.03  E-value=0.73  Score=33.67  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus         7 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~   41 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGF-----ASALELAR-NGARLLLFSRNR   41 (260)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999999988886     57778888 999999998764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=85.01  E-value=0.73  Score=34.13  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus        22 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~   56 (277)
T 2rhc_B           22 SEVALVTGATSGIGLE-----IARRLGK-EGLRVFVCARGE   56 (277)
T ss_dssp             SCEEEEETCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence            5789999999988874     6778888 899999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=84.99  E-value=0.68  Score=35.44  Aligned_cols=27  Identities=15%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.+.| .+..|+|||++|..+|..+..
T Consensus        24 ~~a~L~-~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           24 HHALLI-QALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CSEEEE-ECCTTSCHHHHHHHHHHHHTC
T ss_pred             ceeEEE-ECCCCchHHHHHHHHHHHHhC
Confidence            444555 677899999999999998864

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.99  E-value=0.72  Score=34.13  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        10 ~k~~lVTGas~gIG~-----a~a~~l~~-~G~~V~~~~r~~   44 (281)
T 3s55_A           10 GKTALITGGARGMGR-----SHAVALAE-AGADIAICDRCE   44 (281)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECCS
T ss_pred             CCEEEEeCCCchHHH-----HHHHHHHH-CCCeEEEEeCCc
Confidence            689999998888776     57788889 999999999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=84.96  E-value=0.73  Score=34.00  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        21 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   55 (273)
T 1ae1_A           21 GTTALVTGGSKGIGY-----AIVEELAG-LGARVYTCSRNE   55 (273)
T ss_dssp             TCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCcchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999999988887     47778888 999999998765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=84.91  E-value=0.67  Score=36.43  Aligned_cols=33  Identities=24%  Similarity=0.097  Sum_probs=23.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++.+++ .+..|+||||++..|+..+   .| +++.++
T Consensus       169 ~~~i~l-~G~~GsGKSTl~~~l~~~~---~g-~~~~~~  201 (377)
T 1svm_A          169 KRYWLF-KGPIDSGKTTLAAALLELC---GG-KALNVN  201 (377)
T ss_dssp             CCEEEE-ECSTTSSHHHHHHHHHHHH---CC-EEECCS
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHhhc---CC-cEEEEe
Confidence            455555 6788999999999999753   33 555433

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=84.88  E-value=0.65  Score=33.89  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus        14 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~   48 (260)
T 2zat_A           14 NKVALVTASTDGIGLA-----IARRLAQ-DGAHVVVSSRKQ   48 (260)
T ss_dssp             TCEEEESSCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence            5789999988888774     7788888 999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=84.80  E-value=0.91  Score=30.48  Aligned_cols=19  Identities=47%  Similarity=0.522  Sum_probs=14.8

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |++ -+.+|+||||+...|.
T Consensus         6 v~l-vG~~gvGKStL~~~l~   24 (165)
T 2wji_A            6 IAL-IGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEE-ECSTTSSHHHHHHHHH
T ss_pred             EEE-ECCCCCCHHHHHHHHh
Confidence            444 5788999999988775

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=84.79  E-value=0.75  Score=33.95  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        32 ~k~vlVTGasggIG~-----~la~~l~~-~G~~V~~~~r~~   66 (279)
T 1xg5_A           32 DRLALVTGASGGIGA-----AVARALVQ-QGLKVVGCARTV   66 (279)
T ss_dssp             TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEECCh
Confidence            578999998888776     56778888 899999998764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=84.73  E-value=0.97  Score=33.08  Aligned_cols=35  Identities=11%  Similarity=0.022  Sum_probs=29.0

Q ss_pred             CeEEEEecCC--CCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGK--GGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~k--gG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.  ||.|+     .+|..|++ .|.+|++++-+.
T Consensus         9 ~k~vlVTGas~~~gIG~-----~ia~~l~~-~G~~V~~~~r~~   45 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAY-----GIAQAMHR-EGAELAFTYQND   45 (265)
T ss_dssp             TCEEEECCCCSTTSHHH-----HHHHHHHH-TTCEEEEEESST
T ss_pred             CCEEEEECCCCCCCHHH-----HHHHHHHH-CCCEEEEEcCcH
Confidence            4688998887  78776     57788899 999999998775

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=84.72  E-value=0.77  Score=33.66  Aligned_cols=35  Identities=29%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus         7 ~k~vlVTGas~gIG~~-----ia~~l~~-~G~~V~~~~r~~   41 (260)
T 1nff_A            7 GKVALVSGGARGMGAS-----HVRAMVA-EGAKVVFGDILD   41 (260)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCH
Confidence            5789999999988874     6788888 999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=84.72  E-value=0.63  Score=34.22  Aligned_cols=24  Identities=42%  Similarity=0.437  Sum_probs=19.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      +.+++++ +..|+||||+...++-.
T Consensus        29 Ge~~~l~-G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALM-GPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHhCC
Confidence            6788886 46699999998887764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=84.68  E-value=0.65  Score=36.27  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=17.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~   54 (168)
                      +..|.+. +.||+||||++..+..
T Consensus        33 ~~killl-G~~~SGKST~~kq~~i   55 (362)
T 1zcb_A           33 LVKILLL-GAGESGKSTFLKQMRI   55 (362)
T ss_dssp             CEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred             ccEEEEE-CCCCCcHHHHHHHHHH
Confidence            4555554 6799999999999853

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=84.67  E-value=0.75  Score=34.56  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        31 gk~vlVTGas~gIG~-----~la~~l~~-~G~~V~~~~r~~   65 (301)
T 3tjr_A           31 GRAAVVTGGASGIGL-----ATATEFAR-RGARLVLSDVDQ   65 (301)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            678999998888776     57778888 999999998765

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=84.66  E-value=0.81  Score=33.24  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=29.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus        14 ~k~vlITGasggiG~-----~~a~~l~~-~G~~V~~~~r~~   48 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGL-----AFTRAVAA-AGANVAVIYRSA   48 (265)
T ss_dssp             TEEEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSC
T ss_pred             CCEEEEECCCchHHH-----HHHHHHHH-CCCeEEEEeCcc
Confidence            678999998888775     67788888 999999998754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=84.62  E-value=0.85  Score=32.32  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.++.+..|+||||+.-++.+.|..
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            5566788999999999999888864

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=84.59  E-value=0.68  Score=33.57  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|++++.+.
T Consensus         4 ~k~~lVTGas~gIG~-----~ia~~l~~-~G~~V~~~~~~~   38 (246)
T 3osu_A            4 TKSALVTGASRGIGR-----SIALQLAE-EGYNVAVNYAGS   38 (246)
T ss_dssp             SCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred             CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCC
Confidence            578999998888776     57788899 999999988753

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=84.58  E-value=0.77  Score=34.26  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+     ++|..|++ .|.+|++++-+.
T Consensus        18 ~k~vlVTGasggIG~-----~la~~l~~-~G~~V~~~~r~~   52 (303)
T 1yxm_A           18 GQVAIVTGGATGIGK-----AIVKELLE-LGSNVVIASRKL   52 (303)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            578999998888776     57788888 999999998764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=84.55  E-value=0.69  Score=34.15  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        26 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~   61 (266)
T 3grp_A           26 TGRKALVTGATGGIGE-----AIARCFHA-QGAIVGLHGTRE   61 (266)
T ss_dssp             TTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            4689999999888776     57788899 999999998764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=84.52  E-value=0.81  Score=34.05  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.||.|+     .+|..|++ .|.+|++++-+.
T Consensus        15 ~gk~vlVTGas~gIG~-----~~a~~L~~-~G~~V~~~~r~~   50 (291)
T 3rd5_A           15 AQRTVVITGANSGLGA-----VTARELAR-RGATVIMAVRDT   50 (291)
T ss_dssp             TTCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            3689999999888775     56788888 999999998765

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=84.52  E-value=0.76  Score=33.76  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus         7 ~~k~~lVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~   42 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGL-----ATVELLLE-AGAAVAFCARDG   42 (265)
T ss_dssp             TTCEEEEETCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            3689999998888776     46788888 999999998775

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=84.46  E-value=0.77  Score=33.33  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+++.|+++.||.|+.     +|..|++ .|.+|++++-+.
T Consensus         7 ~k~~lVTGas~gIG~a-----ia~~l~~-~G~~V~~~~r~~   41 (247)
T 2jah_A            7 GKVALITGASSGIGEA-----TARALAA-EGAAVAIAARRV   41 (247)
T ss_dssp             TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            5789999998888874     6778888 999999998764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=84.42  E-value=0.64  Score=34.19  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|+++|-+.
T Consensus        10 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~   44 (267)
T 3t4x_A           10 GKTALVTGSTAGIGK-----AIATSLVA-EGANVLINGRRE   44 (267)
T ss_dssp             TCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence            678999998888776     57788889 999999998765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=84.39  E-value=0.37  Score=36.67  Aligned_cols=23  Identities=39%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             EEecCCCCCChhhHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .++.+..|+|||++|..++..+.
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            34467889999999999988653

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=84.38  E-value=0.75  Score=33.86  Aligned_cols=37  Identities=24%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+++.|+++.||.|+.     +|..|++ .|.+|++++-+..
T Consensus        33 ~~k~vlITGasggIG~~-----la~~L~~-~G~~V~~~~r~~~   69 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWA-----VAEAYAQ-AGADVAIWYNSHP   69 (279)
T ss_dssp             TTCEEEETTTTSSHHHH-----HHHHHHH-HTCEEEEEESSSC
T ss_pred             CCCEEEEECCCcHHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence            46789999999998874     6778888 8999999987753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=84.38  E-value=0.59  Score=34.56  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..|++.|+++.+|.|+     .+|..|++ .|.+|++++..
T Consensus        27 ~~k~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~~~   61 (269)
T 4dmm_A           27 TDRIALVTGASRGIGR-----AIALELAA-AGAKVAVNYAS   61 (269)
T ss_dssp             TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCC
Confidence            4689999998888776     57788899 99999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	2e-25
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	7e-23
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	7e-23
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	3e-21
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	3e-19
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	6e-16
d1byia_	224	c.37.1.10 (A:) Dethiobiotin synthetase {Escherichi	1e-12
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	1e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	5e-04

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 96.2 bits (238), Expect = 2e-25
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%)

Query: 26  KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD-------VYGPSVPM 78
            I   +  + +  GKGGVGK+T A  +AV LA      V L  +D           S+  
Sbjct: 14  DIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLTTSDPAAHLSMTLNGSLNN 72

Query: 79  MMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG 138
           +      P    +     +     K +           +       ++  +  SR +   
Sbjct: 73  LQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREA 132

Query: 139 NLDILVIDMPPGTGDAQL 156
               +V+D  P      L
Sbjct: 133 GKRFVVMDTAPTGHTLLL 150

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 89.0 bits (219), Expect = 7e-23
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
           +I++ SGKGG GK+T   NL+VAL  + + KV  +D D+   ++ +++ +D       D+
Sbjct: 4   IISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVDGDLTMANLSLVLGVDDPDVTLHDV 62

Query: 93  KM--VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149
                 +E+           V   +                  +      D ++ID P 
Sbjct: 63  LAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPA 121

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 89.2 bits (220), Expect = 7e-23
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 12/140 (8%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
            +A+  GKGG+GKSTT  NL   L +     + ++  D    S  +++    +  V   +
Sbjct: 3   QVAI-YGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCDPKADSTRLLLGGLAQKSVLDTL 60

Query: 93  KMVPIENYGVKCMSMGFLVPSSSP---------VVWRGPMVMSALRKMSREVDWGNLDIL 143
           +    +      +  G+                   RG +    + +        +LD +
Sbjct: 61  REEGEDVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAY-TDDLDYV 119

Query: 144 VIDMPPGTGDAQLTTTQTLQ 163
             D+                
Sbjct: 120 FYDVLGDVVCGGFAMPIREG 139

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 85.3 bits (210), Expect = 3e-21
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 12/140 (8%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV--TK 90
             A+  GKGG+GKSTT  NL  ALA     KV ++  D    S  +++    +  +    
Sbjct: 4   QCAI-YGKGGIGKSTTTQNLVAALAEM-GKKVMIVGCDPKADSTRLILHSKAQNTIMEMA 61

Query: 91  DMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD--------WGNLDI 142
                  +      +  G+            P V  A R +   ++          +LD 
Sbjct: 62  AEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDF 121

Query: 143 LVIDMPPGTGDAQLTTTQTL 162
           +  D+               
Sbjct: 122 VFYDVLGDVVCGGFAMPIRE 141

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM 92
            I VASGKGG GK+T   NL VALA      V ++DAD+   ++ +++ ++  P   +++
Sbjct: 3   TITVASGKGGTGKTTITANLGVALAQLGH-DVTIVDADITMANLELILGMEGLPVTLQNV 61

Query: 93  KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMS 126
                       +  G +    + V   G    +
Sbjct: 62  LAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKAN 95

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 71.2 bits (173), Expect = 6e-16
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 22/144 (15%)

Query: 34  IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD-------VYGPSVP--------- 77
               +GKGGVGK++ +   A+ LA +   +V L+  D       V+  ++          
Sbjct: 10  YLFFTGKGGVGKTSISCATAIRLAEQ-GKRVLLVSTDPASNVGQVFSQTIGNTIQAIASV 68

Query: 78  -----MMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMS 132
                + +      +  +   + PI+      +        S                ++
Sbjct: 69  PGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLT 128

Query: 133 REVDWGNLDILVIDMPPGTGDAQL 156
                   D ++ D  P     +L
Sbjct: 129 DASLLTRFDHIIFDTAPTGHTIRL 152

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (148), Expect = 1e-12
 Identities = 12/120 (10%), Positives = 33/120 (27%), Gaps = 6/120 (5%)

Query: 42  GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP----- 96
            VGK+  +  L  A  +    +         G         +      +    +      
Sbjct: 12  EVGKTVASCALLQAAKAA-GYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYAT 70

Query: 97  IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156
           +  Y     +   ++ +         ++ + LR + ++ DW  ++       P +     
Sbjct: 71  VNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTF 130

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 23  KDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI 82
             L +   +++  +  G  G GK+TTA  LA+    K + +  L+ AD   P+    +++
Sbjct: 2   ARLPVLKDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGR-RPLLVAADTQRPAAREQLRL 59

Query: 83  DQK------PEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD 136
             +       EV        I     +   +            R  +    + +++R  +
Sbjct: 60  LGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 119

Query: 137 WGNLDILVIDMPPGTGDAQLTTTQT 161
               D +++ +   TG   L+  + 
Sbjct: 120 VLGPDEVLLVLDAMTGQEALSVARA 144

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 11/118 (9%), Positives = 21/118 (17%), Gaps = 4/118 (3%)

Query: 33  VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV---PMMMKIDQKPEVT 89
            + V  G    GK+  +  L   L     +     +   Y   +       +        
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 90  KDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDM 147
                       +  +            V+         R M       N        
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	99.92
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.89
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.89
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	99.89
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	99.8
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.77
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.4
d1okkd2	207	GTPase domain of the signal recognition particle r	99.13
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.12
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.07
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.03
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.64
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.36
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.95
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.89
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.71
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.62
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.62
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.56
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.53
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.52
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	97.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.47
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.4
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.4
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.28
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.23
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.19
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.12
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.1
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.05
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.0
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.96
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.9
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.82
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.82
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.78
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	96.73
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.71
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.59
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.45
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.42
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.41
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.39
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.35
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.31
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.26
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.26
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.21
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.17
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.98
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.95
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.93
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	95.9
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.88
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.85
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.76
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.63
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.62
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.61
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.59
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.45
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.29
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.24
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.07
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.07
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.93
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.89
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.8
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.75
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	94.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.65
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.61
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.6
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.09
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.99
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.97
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.9
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.86
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.73
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.7
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.7
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.7
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.67
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	93.66
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.64
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.62
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	93.46
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.44
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.42
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.37
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.35
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.35
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.3
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	93.23
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	93.21
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.21
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.12
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.09
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.07
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.86
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.75
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.57
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.49
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.38
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.23
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.12
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.06
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	91.87
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.85
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.84
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.81
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.77
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.48
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.37
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.25
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	90.97
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.93
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.8
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.78
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.72
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.39
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.36
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.28
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.09
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	90.06
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.02
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	89.98
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.8
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.74
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.73
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.68
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.64
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	89.57
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.54
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.5
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.32
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.26
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.19
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	89.13
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.1
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	89.09
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.04
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.01
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.95
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	88.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.75
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	88.73
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	88.59
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.34
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	88.3
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.2
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.17
d1nkta3	288	Translocation ATPase SecA, nucleotide-binding doma	88.14
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.14
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.06
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	87.94
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.91
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	87.85
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	87.77
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.72
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	87.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	87.63
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.57
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.56
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	87.5
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.5
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.48
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	87.41
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	87.33
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	87.31
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.3
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	87.16
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.11
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.08
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.95
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	86.81
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.78
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.74
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	86.69
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	86.67
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.66
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.65
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	86.6
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	86.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.59
d1xpua3	289	Transcription termination factor Rho, ATPase domai	86.59
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.58
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.35
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	86.23
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.06
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	85.75
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.69
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	85.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	85.64
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	85.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.39
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.16
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.06
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	84.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	84.88
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	84.68
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	84.49
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	84.47
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.19
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	83.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	83.87
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.77
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.73
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.67
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	83.64
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	82.8
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	82.4
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	82.3
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	82.19
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.13
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.13
d1g2912	240	Maltose transport protein MalK, N-terminal domain	82.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	81.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	81.84
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	81.8
d2awna2	232	Maltose transport protein MalK, N-terminal domain	81.77
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.68
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	81.5
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	81.32
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	81.26
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	81.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	81.14
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	81.0
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	80.82
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	80.61
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	80.59
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	80.53
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.5
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	80.41
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	80.4
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	80.34
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.22
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	80.08

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.7e-25  Score=164.41  Aligned_cols=123  Identities=27%  Similarity=0.369  Sum_probs=95.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccc--------cCceeecccCCe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK--------DMKMVPIENYGV  102 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~  102 (168)
                      ||+|+|+|+|||+||||+|+|||+.|++ .|+||++||+|++.++++.+++.+.......        ..........++
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~-~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGV   79 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHhCCCcCcchhhhhhccccccccccccCCccc
Confidence            6899999999999999999999999999 9999999999999999999999876543221        122333444677


Q ss_pred             eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      ++++.+...      ..........+.++++.++ +.||+||||+||+++.....++..
T Consensus        80 ~~l~~~~~~------~~~~~~~~~~l~~~l~~l~-~~~D~viiD~~~~~~~~~~~~l~~  131 (232)
T d1hyqa_          80 KVVPAGVSL------EGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIAIAA  131 (232)
T ss_dssp             EEEECCSCH------HHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHHHHH
T ss_pred             eeEeeeccc------ccccccchhhHHHHHHHHh-hccceeeecccccccchhHHHhhh
Confidence            777765221      1112234567888999888 899999999999998887765553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.89  E-value=1.9e-24  Score=164.25  Aligned_cols=120  Identities=25%  Similarity=0.304  Sum_probs=81.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc------------Cceeecc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIE   98 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~   98 (168)
                      ||+|+| |+|||+||||+|+|||.+||+ .|+|||+||+|+|++++..+++.....++.+.            ..+....
T Consensus         2 Mr~Iai-sgKGGVGKTT~a~NLA~~LA~-~G~rVLlID~DpQ~~st~~~l~~~~~~~~~~~~~~~~~~~d~~~~~v~~~~   79 (289)
T d2afhe1           2 MRQCAI-YGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAG   79 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEEC
T ss_pred             ccEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCCEEEEecCCCCCcchhhcCCCCCCchhhhhhccCcccccccceeEecc
Confidence            788998 679999999999999999999 99999999999999888877776665443321            1223334


Q ss_pred             cCCeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHH
Q 030973           99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA  154 (168)
Q Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~  154 (168)
                      ..++..++.+........ ...+......+...+..+. +.||||+|||||+++..
T Consensus        80 ~~~i~~i~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~-~~~D~iiiD~pp~~~~~  133 (289)
T d2afhe1          80 YGGVKCVESGGPEPGVGC-AGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVVCG  133 (289)
T ss_dssp             GGGCEEEECCCCCTTTCC-HHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSCCT
T ss_pred             cccceeeccCCchhhhhh-hhcchHHHHHHHHHHHHhh-ccCCeEeeccCCccCHH
Confidence            456666665422111111 1111112234555555566 89999999999987443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.89  E-value=6.3e-24  Score=159.69  Aligned_cols=119  Identities=20%  Similarity=0.229  Sum_probs=85.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcccc----------CceeecccC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD----------MKMVPIENY  100 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~  100 (168)
                      ||+|+|++ |||+||||+|+|||+.||+ .|+|||+||+|++++++..+++.....+..+.          +.+......
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~q~~~t~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   78 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYG   78 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGG
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHh-CCCcEEEEecCCCCCchhhhhCCCcccchhhhhhhcccccccceEEEecCC
Confidence            68999975 9999999999999999999 99999999999999898888887776655431          223334445


Q ss_pred             CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCH
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD  153 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~  153 (168)
                      .++.++.+........ ..........+.+.+..+. +.||||+|||||+++.
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~  129 (269)
T d1cp2a_          79 GIRCVESGGPEPGVGC-AGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVC  129 (269)
T ss_dssp             GCEEEECCCCCTTSSC-HHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCS
T ss_pred             ceEEeccCcchhhhhh-cccchHHHHHHHHHHHHhh-ccCCEEEeccCCccch
Confidence            6667776543322221 1112223334555566666 8999999999998754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=2.3e-23  Score=153.12  Aligned_cols=124  Identities=21%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCcc-c--------cCceeecccC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT-K--------DMKMVPIENY  100 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~-~--------~~~~~~~~~~  100 (168)
                      ++|+|+|+|+|||+||||+|+|||.+|++ .|+||++||+|+++++++..++........ +        ..........
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   79 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFD   79 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSST
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeCCCCCCChhHHhCCCCcccchhhhccCCCcHHHhhhccccc
Confidence            36899999999999999999999999999 999999999999999999999865543111 1        1112222223


Q ss_pred             CeeeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCCCHHHHHHHhh
Q 030973          101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT  161 (168)
Q Consensus       101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~~~~~~~~~~~  161 (168)
                      +....+.+      .............+.++++.++ ++||+||||+||+++.....++..
T Consensus        80 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~-~~~d~IiiD~~~~~~~~~~~~l~~  133 (237)
T d1g3qa_          80 NVYVLPGA------VDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSAMLS  133 (237)
T ss_dssp             TEEEECCC------CSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHHHTT
T ss_pred             cccccccc------cchhhhhhhhhHHHHHHHHHHH-hcCCEEEEcccccccccchhhhhh
Confidence            33333222      1111111122346778888888 899999999999999888776554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.6e-21  Score=146.46  Aligned_cols=53  Identities=26%  Similarity=0.295  Sum_probs=46.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK   85 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~   85 (168)
                      ++.|.|+|+|||+||||+|+|||..||+ .|+|||+||+|++ ++++..||.+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~-~G~rVLlvD~Dp~-~~l~~~lg~~~~   59 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDPA-SNVGQVFSQTIG   59 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT-CCHHHHTTSCCC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHH-CCCCEEEEeCCCC-CCHHHHhCCCCc
Confidence            3445577999999999999999999999 9999999999996 489999987643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.6e-20  Score=141.24  Aligned_cols=58  Identities=31%  Similarity=0.390  Sum_probs=41.9

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP   86 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~   86 (168)
                      +....+.|.++|+|||+||||+|+|||+.||+ .|+|||+||+|+++ +++.+|+.....
T Consensus        15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~-~G~rVllvD~Dp~~-~l~~~lg~~~~~   72 (279)
T d1ihua2          15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPAA-HLSMTLNGSLNN   72 (279)
T ss_dssp             HHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC------------CC
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCCC-ChHHHhCCcccc
Confidence            34557778899999999999999999999999 99999999999975 788888866544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.8e-14  Score=101.34  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      |.+.|++...||||||+++|||+.|++ +|+||++||.|+++ +....++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~-~G~rVl~id~d~~g-~~~~~~~   49 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYKPVASG-SEKTPEG   49 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEECSEEES-CBCCTTS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEECccccC-CCCCCCC
Confidence            456665544599999999999999999 99999999999876 4344443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.13  E-value=4.7e-11  Score=85.56  Aligned_cols=50  Identities=26%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      .++++|+++ +-.|+||||+++.||+++.+ .|+||.+|-+|.++.+....+
T Consensus         4 ~~~~vi~lv-GptGvGKTTTiaKLA~~~~~-~g~kV~lit~Dt~R~gA~eQL   53 (207)
T d1okkd2           4 PKGRVVLVV-GVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQL   53 (207)
T ss_dssp             CSSSEEEEE-CSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTHHHHH
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeccccccchhhH
Confidence            447788886 67799999999999999998 999999999999887655444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=4.6e-11  Score=85.78  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCCCCCccccCceeecccCCeeeeecCcc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL  110 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  110 (168)
                      +.+|++ -+-.|+||||+++.||+.+.+ .|++|.+|-+|.++......+....+.             -++.+....  
T Consensus         9 p~vi~l-vGptGvGKTTTiAKLA~~~~~-~g~kV~lit~Dt~R~gA~eQL~~~a~~-------------l~v~~~~~~--   71 (211)
T d2qy9a2           9 PFVILM-VGVNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVWGQR-------------NNIPVIAQH--   71 (211)
T ss_dssp             TEEEEE-ECCTTSCHHHHHHHHHHHHHT-TTCCEEEECCCTTCHHHHHHHHHHHHH-------------TTCCEECCS--
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEecccccccchhhhhhhhhh-------------cCCcccccc--
Confidence            455555 567799999999999999998 999999999999886543333211110             122222111  


Q ss_pred             CCCCCCcccCchhHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q 030973          111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT  151 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD~IiiD~p~~~  151 (168)
                         ..      ......+.+..+..+.++||+|||||+...
T Consensus        72 ---~~------~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~  103 (211)
T d2qy9a2          72 ---TG------ADSASVIFDAIQAAKARNIDVLIADTAGRL  103 (211)
T ss_dssp             ---TT------CCHHHHHHHHHHHHHHTTCSEEEECCCCCG
T ss_pred             ---cC------CCHHHHHHHHHHHHHHcCCCEEEeccCCCc
Confidence               11      112344555554433378999999998753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.07  E-value=1.1e-10  Score=83.69  Aligned_cols=48  Identities=27%  Similarity=0.322  Sum_probs=40.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMM   80 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~   80 (168)
                      .++|++ .+..|+||||+++.||.++.+ .|+||.+|.+|..++.....+
T Consensus        10 ~~vi~l-vGp~GvGKTTTiaKLA~~~~~-~g~kV~lit~Dt~R~gA~eQL   57 (207)
T d1ls1a2          10 RNLWFL-VGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQL   57 (207)
T ss_dssp             SEEEEE-ECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHH
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEecccccchHHHHH
Confidence            566655 688999999999999999999 999999999999886654444

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.03  E-value=1.9e-10  Score=82.60  Aligned_cols=48  Identities=44%  Similarity=0.562  Sum_probs=35.5

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP   77 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~   77 (168)
                      .+.+.+|++ -+-.|+||||+++.||+++.+ .|+||.+|-+|.++..-.
T Consensus         9 ~k~p~vi~l-vGptGvGKTTTiAKLA~~~~~-~g~kV~lit~Dt~R~ga~   56 (211)
T d1j8yf2           9 DKIPYVIML-VGVQGTGKATTAGKLAYFYKK-KGFKVGLVGADVYRPAAL   56 (211)
T ss_dssp             SSSSEEEEE-ECSCCC----HHHHHHHHHHH-TTCCEEEEECCCSSHHHH
T ss_pred             CCCCEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCceEEEEeeccccchh
Confidence            344566666 577899999999999999998 999999999999885433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=4e-10  Score=80.97  Aligned_cols=47  Identities=30%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM   79 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~   79 (168)
                      +.+|++ -+-.|+||||+++.||.++.. .|+||.+|-+|.++......
T Consensus        11 p~vi~l-vGptGvGKTTTiAKLAa~~~~-~~~kV~lit~Dt~R~gA~eQ   57 (213)
T d1vmaa2          11 PFVIMV-VGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQ   57 (213)
T ss_dssp             CEEEEE-ECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHH
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCceEEEeecccccchhHH
Confidence            556666 567799999999999999988 99999999999988554333

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.64  E-value=1.3e-07  Score=64.51  Aligned_cols=41  Identities=22%  Similarity=0.177  Sum_probs=35.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ||+|+|++ ..|+||||++..|+..|.. +|++|.+|..|...
T Consensus         1 Mkii~I~G-~~gSGKTTli~~l~~~L~~-~g~~v~vik~d~~~   41 (165)
T d1xjca_           1 MNVWQVVG-YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHG   41 (165)
T ss_dssp             CCEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred             CcEEEEEe-CCCCCHHHHHHHHHHHHHh-CCCeEEEEEeccCc
Confidence            67888866 5599999999999999999 99999999998765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.1e-06  Score=59.31  Aligned_cols=42  Identities=26%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      .++|+|+ +..|+||||++.+|+..|.+ +|+||.+++.|....
T Consensus         2 ~Pvi~it-G~~GSGKTTL~~~L~~~l~~-~g~~v~v~~~d~~~~   43 (170)
T d1np6a_           2 IPLLAFA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDM   43 (170)
T ss_dssp             CCEEEEE-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC--
T ss_pred             CCEEEEE-cCCCCCHHHHHHHHHHHHHH-CCCeEEEeccccccc
Confidence            4577775 66799999999999999999 999999999998653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=3.6e-06  Score=58.74  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=37.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ++|.+..+.+|+||||+|..||..+.. .|.++-+++.|..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~-~~~~~~~~~~D~~r   42 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYR   42 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh-cCCCCeEEccccee
Confidence            567788899999999999999999999 99999999999643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.95  E-value=3.4e-05  Score=58.05  Aligned_cols=44  Identities=34%  Similarity=0.400  Sum_probs=39.1

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP   74 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~   74 (168)
                      ++..+|++ ++.+|+||||+.-.|+.++.. .|+||-+|-.||..+
T Consensus        49 ~~~~~igi-tG~pGaGKSTli~~l~~~~~~-~g~~vaViavDpss~   92 (323)
T d2qm8a1          49 GRAIRVGI-TGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSST   92 (323)
T ss_dssp             CCSEEEEE-ECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGGG
T ss_pred             CCceEEee-eCCCCCCHHHHHHHHHHHHhh-cCCceeeeecccccH
Confidence            45788998 568899999999999999998 999999999998664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.9e-05  Score=57.77  Aligned_cols=46  Identities=30%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS   75 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~   75 (168)
                      .++..+|+|+ +.+|+||||+.-.|+.++.. .|+||.++-.||..+-
T Consensus        51 ~~~~~~Igit-G~pGaGKSTLi~~l~~~~~~-~g~~vavlavDpss~~   96 (327)
T d2p67a1          51 CGNTLRLGVT-GTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSPV   96 (327)
T ss_dssp             CSCSEEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC---
T ss_pred             cCCceEEEee-CCCCCCHHHHHHHHHHHHHh-cCCceeeecCCCceee
Confidence            3458899995 57899999999999999999 9999999999997643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00017  Score=52.51  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .|..+.+.+|+||||+|.+++....+ .|.+|++||+....
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~-~g~~~vyidtE~~~   94 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL   94 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEEcccccc
Confidence            45666789999999999999999999 99999999998643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.70  E-value=9.5e-05  Score=54.08  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|.-+.+.+|+|||++|..++..+.+ .|.+|++||+...
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk-~g~~v~yiDtE~~   96 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHA   96 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHh-CCCEEEEEECCcc
Confidence            35566788999999999999999988 9999999999853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.70  E-value=2.3e-05  Score=55.78  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..+.++.+.+|+|||++|.++|..+++ .|.+|++++++..
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~~~-~~~~~~~is~e~~   65 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEES   65 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHH-hccccceeeccCC
Confidence            345566789999999999999999999 9999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.2e-05  Score=53.01  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .|.+ .+.+|+||||++..++..+.. .|.+|.++.+++..
T Consensus         3 ~v~I-tG~~GtGKTtl~~~i~~~l~~-~~~~v~~~~~~~~~   41 (189)
T d2i3ba1           3 HVFL-TGPPGVGKTTLIHKASEVLKS-SGVPVDGFYTEEVR   41 (189)
T ss_dssp             CEEE-ESCCSSCHHHHHHHHHHHHHH-TTCCCEEEECCEEE
T ss_pred             EEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEecccc
Confidence            3444 689999999999999999999 99999999988754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.62  E-value=9.9e-06  Score=57.63  Aligned_cols=38  Identities=29%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |.++.+-.|+||||+.-+|..++.  .++++.+|..|+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~--~~~~~~ivn~d~~~   39 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh--hCCeEEEEecCccc
Confidence            566688899999999999998764  58899999999865

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.62  E-value=3.9e-05  Score=53.95  Aligned_cols=41  Identities=12%  Similarity=0.082  Sum_probs=32.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+|||++|.++|...+...+.+|++++++...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~   67 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP   67 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCH
Confidence            35555789999999999999887665367899999998644

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.56  E-value=4.5e-05  Score=51.83  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ||+|.| .+-.|+||||++..||..|.. .|.++..+..
T Consensus         1 mkiivi-~G~~GsGKTT~~~~La~~L~~-~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIV-TGIPGVGKSTVLAKVKEILDN-QGINNKIINY   37 (194)
T ss_dssp             CEEEEE-EECTTSCHHHHHHHHHHHHHT-TTCCEEEEEH
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEC
Confidence            455555 567799999999999999999 9999988864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=6e-05  Score=51.52  Aligned_cols=42  Identities=21%  Similarity=0.179  Sum_probs=35.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++|.-+++..|+||||+|..|+..+.. .+..+..++.|...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~-~~~~~~~~~~~~~~   62 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLRE-QGISVCVFHMDDHI   62 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGGC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcc-ccccceeccccccc
Confidence            4555555888999999999999999999 99999999877643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.52  E-value=3.1e-05  Score=54.61  Aligned_cols=51  Identities=24%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccc
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK   81 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~   81 (168)
                      ...|.++++.+|+||||+|..|+..+.+..+..+.++|.|..+..+..-++
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~   73 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLG   73 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCC
Confidence            334556688999999999999999886536889999999987655543333

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.47  E-value=0.00024  Score=47.66  Aligned_cols=37  Identities=27%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      |-|+. ..|=||||.|..+|...+- .|+||++|=+=-.
T Consensus         5 i~vyt-G~GKGKTTAAlG~alRA~G-~G~rV~ivQFlKg   41 (157)
T d1g5ta_           5 IIVFT-GNGKGKTTAAFGTAARAVG-HGKNVGVVQFIKG   41 (157)
T ss_dssp             EEEEE-SSSSCHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred             EEEEe-CCCCCcHHHHHHHHHHHhc-CCCEEEEEEEecC
Confidence            34443 3466999999999999999 9999999988553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00053  Score=49.99  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=35.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ...|..+.+..|+||||+|..++....+ .|.+|++||+.-.-
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g~~~vyIDtE~~~  100 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHAL  100 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCC
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhc-CCCEEEEEECCccC
Confidence            3455666788999999999999999888 99999999998743

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.40  E-value=9.5e-05  Score=49.54  Aligned_cols=41  Identities=29%  Similarity=0.247  Sum_probs=31.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+|.+ ++-+|+||||+|..||..|.......+..+|.|..
T Consensus         6 g~~I~l-~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~   46 (183)
T d1m8pa3           6 GFTIFL-TGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV   46 (183)
T ss_dssp             CEEEEE-ECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             CeEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHh
Confidence            455555 68999999999999999997724456777777653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.40  E-value=0.00012  Score=53.09  Aligned_cols=41  Identities=24%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      -+.++.+.+|+|||+++.++|..++...|.+|+++.++...
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~   76 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV   76 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccch
Confidence            35567899999999999999998875379999999998643

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.28  E-value=9.7e-05  Score=54.52  Aligned_cols=41  Identities=22%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++|+| ++.+|+||||++..|+..+.+ .|.++++|..|-..
T Consensus         4 ~pIIgI-aG~SGSGKTTva~~l~~i~~~-~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           4 HPIISV-TGSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDAFH   44 (288)
T ss_dssp             SCEEEE-ESCC---CCTHHHHHHHHHHH-HTCCEEEEEGGGGB
T ss_pred             CCEEEE-ECCCCCcHHHHHHHHHHHHhh-cCCCeEEEeCCCCC
Confidence            558888 677899999999999999998 89999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=0.0001  Score=49.72  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      |+|+| .+-.|+||||++..|+..|.. .+.++.++..
T Consensus         2 kiI~i-~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~   37 (190)
T d1khta_           2 KVVVV-TGVPGVGSTTSSQLAMDNLRK-EGVNYKMVSF   37 (190)
T ss_dssp             CEEEE-ECCTTSCHHHHHHHHHHHHHT-TTCCCEEEEH
T ss_pred             CEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCeEEEec
Confidence            34555 778899999999999999998 8989888754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00019  Score=51.77  Aligned_cols=40  Identities=30%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH---------hCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS---------KCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~---------~~g~rVlliD~D~~~   73 (168)
                      +.++.+.+|+||||++.++|..+|.         ..+.+|++++++...
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~~   79 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP   79 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccchH
Confidence            6667899999999999999999885         023489999998644

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.12  E-value=0.00015  Score=48.27  Aligned_cols=36  Identities=33%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |+.+.++.+.+|+||||+|..||..+    +. ..+++.|.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~----~~-~~~~~~d~   36 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQL----DN-SAYIEGDI   36 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHS----SS-EEEEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEehHH
Confidence            34455667999999999999888755    32 34455554

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=49.87  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.+| +.++.+|+||||+|..||..+.. .+..+-.++.|...
T Consensus        19 g~vI-~L~G~pGSGKTTiAk~La~~l~~-~~~~~~~~~~d~~~   59 (195)
T d1x6va3          19 GCTV-WLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR   59 (195)
T ss_dssp             CEEE-EEESSCHHHHHHHHHHHHHHHHH-TTCCEEEECHHHHT
T ss_pred             CeEE-EEECCCCCCHHHHHHHHHHHHHh-cCCCccchhHHhhh
Confidence            4454 56789999999999999999999 88888888776543

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00028  Score=52.54  Aligned_cols=42  Identities=33%  Similarity=0.370  Sum_probs=34.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~~~   73 (168)
                      +-+|+| ++..|+||||+|..|+..|++. .+.+|.+|.+|-..
T Consensus        80 P~iIGI-aG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          80 PYIISI-AGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CEEEEE-eCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            445555 7888999999999999999851 36899999999754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.00  E-value=0.00018  Score=47.98  Aligned_cols=36  Identities=22%  Similarity=0.207  Sum_probs=27.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .++| +.++..|+||||+|..|+..+    +.+++.+|.|.
T Consensus         3 ~kiI-~l~G~~GsGKsTva~~L~~~l----~~~~~~~~~d~   38 (178)
T d1qhxa_           3 TRMI-ILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDS   38 (178)
T ss_dssp             CCEE-EEECCTTSSHHHHHHHHHHHS----SSCEEEEEHHH
T ss_pred             CeEE-EEECCCCCCHHHHHHHHHHHc----CCCeEEeecch
Confidence            3444 457899999999999988765    55677777665

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.96  E-value=0.00029  Score=47.01  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +++|. +++..|+||||+|..|+.    ..|.+.+.+|.|.
T Consensus         4 g~iI~-l~G~~GsGKSTia~~La~----~lg~~~~~~~~d~   39 (176)
T d1zp6a1           4 GNILL-LSGHPGSGKSTIAEALAN----LPGVPKVHFHSDD   39 (176)
T ss_dssp             TEEEE-EEECTTSCHHHHHHHHHT----CSSSCEEEECTTH
T ss_pred             CeEEE-EECCCCCCHHHHHHHHHH----HhCCCEEEecHHH
Confidence            45554 578899999999876654    2578899998874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00024  Score=46.58  Aligned_cols=33  Identities=36%  Similarity=0.465  Sum_probs=24.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.|.++ +..|+||||+|..||..|    |.++  +|.|.
T Consensus         3 k~I~l~-G~~GsGKSTvak~La~~L----~~~~--id~~~   35 (169)
T d1kaga_           3 RNIFLV-GPMGAGKSTIGRQLAQQL----NMEF--YDSDQ   35 (169)
T ss_dssp             CCEEEE-CCTTSCHHHHHHHHHHHT----TCEE--EEHHH
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHh----CCCe--Eeech
Confidence            456665 899999999999999865    4454  45443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00078  Score=47.06  Aligned_cols=37  Identities=30%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      ++.|+| .+-.|+||||.+..|+..|.. .|.+|.+++.
T Consensus         3 G~lI~i-eG~dGsGKsT~~~~L~~~L~~-~g~~v~~~~~   39 (209)
T d1nn5a_           3 GALIVL-EGVDRAGKSTQSRKLVEALCA-AGHRAELLRF   39 (209)
T ss_dssp             CCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred             eeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence            556666 577789999999999999999 9999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00085  Score=46.20  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .++.+--|+||||++..|+..|.. .|.+|.++..-
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~-~g~~v~~~~~P   37 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRA-AGRSVATLAFP   37 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEecC
Confidence            445789999999999999999999 99999998654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.78  E-value=0.00051  Score=44.83  Aligned_cols=36  Identities=25%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ||.+.++.+.+|+||||+|..|+.   +  ......++.|-
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~---~--~~~~~~~~~d~   36 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIA---K--NPGFYNINRDD   36 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH---H--STTEEEECHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---h--CCCCEEechHH
Confidence            344556789999999999876633   2  33455666553

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.73  E-value=0.00076  Score=53.14  Aligned_cols=75  Identities=24%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             eecCceeeccccCCccc-ccCCCCeEEEEecC---CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCCCcccccccCC
Q 030973            9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ   84 (168)
Q Consensus         9 e~~~~~r~~~~~~~~~~-~~~~~~~vI~v~s~---kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~~l~~~~~~~~   84 (168)
                      |-|...+..+.+...+. +....+|.|.|++-   .-|+||||++..|+..|++ .|+++.+-   .+.||+.=.||+..
T Consensus        28 ~~yG~~kaKv~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~aL~~-lgk~~~~~---lRePSlGP~fGiKG  103 (549)
T d1eg7a_          28 ELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALAR-LGKRVMVC---LREPSLGPSFGIKG  103 (549)
T ss_dssp             EESSSSCEEECTHHHHHHTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCSTHHHHTTC
T ss_pred             hhcCCcceEecHHHHHhhccCCCceEEEEEeCCCCCCCCCcceeHHhHHHHHHH-hCCceEEE---EecCCCCCcccccc
Confidence            44555555554433222 12345888888764   5699999999999999999 99999875   46678888898887


Q ss_pred             CCC
Q 030973           85 KPE   87 (168)
Q Consensus        85 ~~~   87 (168)
                      ...
T Consensus       104 GAa  106 (549)
T d1eg7a_         104 GAA  106 (549)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00071  Score=44.92  Aligned_cols=27  Identities=37%  Similarity=0.403  Sum_probs=21.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .+.|.++.+.+|+||||+|..||..+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            334455578999999999999998773

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00045  Score=46.18  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+|.|+| .|..|+||||+|..||..+
T Consensus         6 ~~K~I~i-~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAI-LGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEE-ECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            3677888 5666999999999998865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0007  Score=47.03  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC-----CCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~-----g~rVlliD~D~~   72 (168)
                      +-+|++ ++..|+||||+|..|+..|.. .     +.+|.+|.+|-.
T Consensus         2 P~iIgI-~G~~gSGKSTla~~L~~~l~~-~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           2 PFLIGV-SGGTASGKSSVCAKIVQLLGQ-NEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CEEEEE-ECSTTSSHHHHHHHHHHHTTG-GGSCGGGCSEEEEEGGGG
T ss_pred             CEEEEE-ECCCCCCHHHHHHHHHHHhch-hccccCCCceEEEecccc
Confidence            345666 678899999999999998865 3     457899998854

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0016  Score=47.82  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D~~~   73 (168)
                      .+.|.=+++..|+||||+|..|...|.+..  +.+|.+|..|-..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            444444488889999999999998887622  4579999888743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.42  E-value=0.0012  Score=45.02  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=19.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|++ .+.+|+||||+|..||..+
T Consensus         6 p~iI~i-~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFV-LGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEE-EESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEE-ECCCCCCHHHHHHHHHHHH
Confidence            455544 6788999999999998765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.41  E-value=0.00097  Score=46.63  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCC----------------CeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQ----------------LKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g----------------~rVlliD~D~~   72 (168)
                      .+.++.+-+|+|||+++.++|..++. .+                .+++.|+++..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~e~~   89 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQN-PEFLFYDEEAVSKGEVAQPKAVYIDTEGT   89 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTC-GGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHh-cCCCceEEeecccchhcCceEEEEEecCC
Confidence            46666789999999999999999886 44                35677777643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0065  Score=42.59  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .++..+ ++--|+||||+..++...  . .|+|+.+|--|...
T Consensus         3 iPv~ii-tGFLGaGKTTll~~lL~~--~-~~~riaVI~Ne~g~   41 (222)
T d1nija1           3 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGE   41 (222)
T ss_dssp             EEEEEE-EESSSSSCHHHHHHHHHS--C-CCCCEEEECSSCCS
T ss_pred             CCEEEE-eeCCCCCHHHHHHHHHhc--C-CCCcEEEEEecccc
Confidence            345445 555699999998777653  4 68999999888644

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=43.73  Aligned_cols=27  Identities=41%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      |++ .+.+|+||||+|..||..+    |.+++
T Consensus         7 I~i-~G~pGsGKTTia~~La~~l----~~~~i   33 (173)
T d1rkba_           7 ILL-TGTPGVGKTTLGKELASKS----GLKYI   33 (173)
T ss_dssp             EEE-ECSTTSSHHHHHHHHHHHH----CCEEE
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHH----CCcEE
Confidence            444 5888999999999998765    55654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.31  E-value=0.001  Score=44.11  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=18.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .|++ .+.+|+||||+|..||..+
T Consensus         7 ~I~i-~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILI-TGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEE-ECSTTSSHHHHHHHHHHHS
T ss_pred             EEEE-EeCCCCCHHHHHHHHHHHh
Confidence            3444 4899999999999998765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.26  E-value=0.0014  Score=43.84  Aligned_cols=33  Identities=33%  Similarity=0.532  Sum_probs=24.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|.++ +-+|+||||++..||..|    |.+  ++|+|.
T Consensus         3 ~~Iil~-G~~GsGKSTia~~LA~~L----g~~--~id~D~   35 (170)
T d1e6ca_           3 EPIFMV-GARGCGMTTVGRELARAL----GYE--FVDTDI   35 (170)
T ss_dssp             CCEEEE-SCTTSSHHHHHHHHHHHH----TCE--EEEHHH
T ss_pred             CCEEEE-CCCCCCHHHHHHHHHHHh----CCC--EEehhh
Confidence            456665 779999999999999877    444  567764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.26  E-value=0.0021  Score=43.62  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+++| + -+.+|+||||+|..||..+
T Consensus         3 ~~rii-l-~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAV-L-LGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEE-E-ECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEE-E-ECCCCCCHHHHHHHHHHHh
Confidence            35666 4 3899999999999999766

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.25  E-value=0.0023  Score=45.02  Aligned_cols=42  Identities=26%  Similarity=0.182  Sum_probs=33.4

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh-----CCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~-----~g~rVlliD~D~~~   73 (168)
                      ..+.++++.+|+||||++.++|...+..     .+.+++.+++....
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF   82 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchh
Confidence            3456668899999999999999988741     36789999997654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.21  E-value=0.001  Score=44.34  Aligned_cols=31  Identities=45%  Similarity=0.446  Sum_probs=23.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.++ +-+|+||||++..||..|..      -++|+|.
T Consensus         3 I~li-G~~GsGKsTi~k~La~~l~~------~~~d~d~   33 (161)
T d1viaa_           3 IVFI-GFMGSGKSTLARALAKDLDL------VFLDSDF   33 (161)
T ss_dssp             EEEE-CCTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHhCC------CEEecCc
Confidence            5555 77999999999999998844      3567763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0012  Score=46.10  Aligned_cols=40  Identities=25%  Similarity=0.088  Sum_probs=31.6

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYG   73 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~~   73 (168)
                      +..+.+.+|+||||++.++|...+.     ..|.+++++|+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchH
Confidence            5555788999999999999876532     047899999998765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.002  Score=44.01  Aligned_cols=26  Identities=35%  Similarity=0.378  Sum_probs=21.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ..++|.++ +.+|+||||+|..||..+
T Consensus         7 ~~~iI~i~-GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVL-GGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            36777775 778999999999998765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.002  Score=42.81  Aligned_cols=31  Identities=48%  Similarity=0.574  Sum_probs=23.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |.++ +-.|+||||++..||..|..    .  .+|+|.
T Consensus         4 Ivli-G~~G~GKSTig~~La~~l~~----~--fiD~D~   34 (165)
T d2iyva1           4 AVLV-GLPGSGKSTIGRRLAKALGV----G--LLDTDV   34 (165)
T ss_dssp             EEEE-CSTTSSHHHHHHHHHHHHTC----C--EEEHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHhCC----C--eEeecc
Confidence            4455 78999999999999987743    4  468774

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.95  E-value=0.004  Score=43.48  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.7

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+..+..|+|||.++.+++..+.+ .+++|+.+++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~-~~~~~~~~~~~~   74 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSADD   74 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc-CccceEEechHH
Confidence            356788999999999999999999 999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.93  E-value=0.0022  Score=45.58  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++. .+..+.+|+||||+|..||..+    +...+.|++|..
T Consensus        32 P~~-ilL~GpPGtGKT~la~~la~~~----~~~~~~i~~d~~   68 (273)
T d1gvnb_          32 PTA-FLLGGQPGSGKTSLRSAIFEET----QGNVIVIDNDTF   68 (273)
T ss_dssp             CEE-EEEECCTTSCTHHHHHHHHHHT----TTCCEEECTHHH
T ss_pred             CEE-EEEECCCCCCHHHHHHHHHHHh----hcceEEEecHHH
Confidence            444 4456889999999988877654    556888888654

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0061  Score=42.32  Aligned_cols=36  Identities=19%  Similarity=0.077  Sum_probs=31.0

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ++.++|+|++   -.||||++..++..|.. .|++|.++-
T Consensus         3 ~~~~vI~ITG---T~GKTTt~~~l~~iL~~-~g~~~~~~g   38 (234)
T d1e8ca3           3 DNLRLVGVTG---TNGKTTTTQLLAQWSQL-LGEISAVMG   38 (234)
T ss_dssp             GSSEEEEEES---SSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             cCCeEEEEEC---CCcHHHHHHHHHHHHHH-CCCCeEEEC
Confidence            3478999984   45999999999999999 999998763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.88  E-value=0.0026  Score=44.01  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      ++..+.+.+|+||||.|..||..|.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3444689999999999999998775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0033  Score=43.27  Aligned_cols=26  Identities=38%  Similarity=0.552  Sum_probs=21.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      .++|++ ++.+|+||||.|..||..+.
T Consensus         3 ~piI~I-~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITI-DGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEE-ECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence            456655 78999999999999998885

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.85  E-value=0.0068  Score=42.65  Aligned_cols=41  Identities=20%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ...+. +.+.+|+|||+++..++..+....+.+++.+.+...
T Consensus        43 ~~~ll-l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~   83 (276)
T d1fnna2          43 YPRAT-LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY   83 (276)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred             CCceE-EECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence            44444 578899999999999999997645778888877654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0038  Score=43.04  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++-|+| -+-.|+||||.+..|+..|.. .|.++.++-..|.
T Consensus         2 gkfIvi-EG~dGsGKsT~~~~L~~~L~~-~g~~~~~~~~ep~   41 (210)
T d4tmka_           2 SKYIVI-EGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPG   41 (210)
T ss_dssp             CCEEEE-EECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSC
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCCeEEEecCCC
Confidence            455666 578899999999999999999 9988776655553

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.63  E-value=0.0039  Score=42.45  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|.+. +.+|+||||+|..||..+
T Consensus         8 ~~iI~l~-G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVV-GGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEE-ECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            6677775 569999999999887744

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0047  Score=41.86  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=18.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+|++ .+.+|+||||.|..||..+
T Consensus         2 ~iI~i-~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFV-LGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            34555 5669999999999999866

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.004  Score=41.89  Aligned_cols=23  Identities=35%  Similarity=0.326  Sum_probs=18.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      .+.+.++.+.+|+||||+|..++
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45567778999999999988764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.59  E-value=0.0045  Score=42.19  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             CCCCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           28 DGVKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        28 ~~~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+++|.+  +.+|+||||+|..||..+
T Consensus         4 ~r~mrIili--G~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           4 ARLLRAAIM--GAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             SCCCEEEEE--CCTTSSHHHHHHHHHHHB
T ss_pred             CcceeEEEE--CCCCCCHHHHHHHHHHHH
Confidence            344665544  899999999999988754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.0064  Score=40.84  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=19.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|.+  +.+|+||||+|..||..+
T Consensus         3 mrIvl~--G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLI--GPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEE--CCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEE--CCCCCCHHHHHHHHHHHh
Confidence            555544  899999999999998866

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.011  Score=37.39  Aligned_cols=40  Identities=8%  Similarity=-0.012  Sum_probs=32.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHh-CCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~-~g~rVlliD~D~   71 (168)
                      +-+|. +.+-.|+||+|+|..|-..|-+. .|++|-++|.|-
T Consensus         6 gf~i~-~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~n   46 (122)
T d1g8fa3           6 GFSIV-LGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN   46 (122)
T ss_dssp             CEEEE-ECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ceEEE-EeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCC
Confidence            44454 46788999999999999999872 379999999983

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0038  Score=42.31  Aligned_cols=39  Identities=23%  Similarity=0.106  Sum_probs=28.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCC------CeEEEEeCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQ------LKVGLLDADVY   72 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g------~rVlliD~D~~   72 (168)
                      .+..+++.+|+|||++|.++|...+. .+      ..+..++....
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~~-~~~~~~~~~~~~~~~~~~~   68 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEGT   68 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSSC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHH-hhccccccceehhhhhhhh
Confidence            35555889999999999999998876 43      24555555543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.07  E-value=0.0069  Score=42.33  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=22.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      -+.| .+.+|+||||+|..+|..+.    .....+..
T Consensus        37 ~~L~-~GPpGtGKT~lA~~la~~~~----~~~~~~~~   68 (238)
T d1in4a2          37 HVLL-AGPPGLGKTTLAHIIASELQ----TNIHVTSG   68 (238)
T ss_dssp             CEEE-ESSTTSSHHHHHHHHHHHHT----CCEEEEET
T ss_pred             eEEE-ECCCCCcHHHHHHHHHhccC----CCcccccC
Confidence            3555 56799999999998887653    34454443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.07  E-value=0.0042  Score=42.06  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=17.6

Q ss_pred             ecCCCCCChhhHHHHHHHHHH
Q 030973           37 ASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.+.+|+||||+|..||..+.
T Consensus         8 i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           8 ISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             EEESTTSSHHHHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHHHHC
Confidence            457889999999999988773

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.97  E-value=0.011  Score=42.79  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=20.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      ..++|++ .+-||+||||+|.++....
T Consensus        43 ~~~~v~I-~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFL-HGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEE-ECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEE-ECCCCCCHHHHHHHHHHhh
Confidence            3566666 5699999999999987764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.93  E-value=0.0095  Score=39.92  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=17.8

Q ss_pred             ecCCCCCChhhHHHHHHHHH
Q 030973           37 ASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+.+|+||||+|..||..+
T Consensus         5 i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           5 LMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            35899999999999999877

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.89  E-value=0.0089  Score=39.79  Aligned_cols=20  Identities=35%  Similarity=0.441  Sum_probs=17.6

Q ss_pred             ecCCCCCChhhHHHHHHHHH
Q 030973           37 ASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.+.+|+||||+|..||..+
T Consensus         5 i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           5 LMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            46889999999999998876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.0099  Score=39.74  Aligned_cols=19  Identities=53%  Similarity=0.639  Sum_probs=17.2

Q ss_pred             cCCCCCChhhHHHHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+|+||||+|..||..+
T Consensus         6 ~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            4899999999999999877

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.75  E-value=0.011  Score=41.47  Aligned_cols=31  Identities=19%  Similarity=0.081  Sum_probs=22.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      |++|+++++ -|+||||+|..|+..    .|  ..++|
T Consensus         1 M~iIgiTG~-igSGKsTva~~l~e~----~g--~~~i~   31 (241)
T d1deka_           1 MKLIFLSGV-KRSGKDTTADFIMSN----YS--AVKYQ   31 (241)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHHH----SC--EEECC
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHHh----CC--CeEEc
Confidence            678999754 699999988776442    34  45676

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.014  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=28.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      .|+|+|++.   -||||++.-++..|.. .|++|.+.
T Consensus         2 ~kvI~VTGT---nGKTTt~~mi~~iL~~-~g~~~~~~   34 (214)
T d1gg4a4           2 ARVVALTGS---SGKTSVKEMTAAILSQ-CGNTLYTA   34 (214)
T ss_dssp             CEEEEEECS---SCHHHHHHHHHHHHTT-TSCEEECC
T ss_pred             CCEEEEeCC---CcHHHHHHHHHHHHHh-CCCCEEEe
Confidence            579999754   5899999999999999 99888764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.0094  Score=41.86  Aligned_cols=37  Identities=22%  Similarity=0.127  Sum_probs=27.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+.+. ..+.+|+||||++..+|..    .+..+..+++...
T Consensus        52 ~~~ll-l~GPpG~GKTt~a~~la~~----~~~~~~~~~~~~~   88 (253)
T d1sxja2          52 FRAAM-LYGPPGIGKTTAAHLVAQE----LGYDILEQNASDV   88 (253)
T ss_dssp             CSEEE-EECSTTSSHHHHHHHHHHH----TTCEEEEECTTSC
T ss_pred             CceEE-EECCCCCCHHHHHHHHHHH----HHhhhhccccccc
Confidence            34444 4577999999999988874    4678888877653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.62  E-value=0.015  Score=40.98  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ...+.++.+.+|+|||+++..++..+.+
T Consensus        45 ~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          45 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4446667899999999999999998864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.61  E-value=0.011  Score=41.28  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +++.+|+||||+|..+|..+    +.....++.
T Consensus        40 l~GPpG~GKTtla~~la~~~----~~~~~~~~~   68 (239)
T d1ixsb2          40 LFGPPGLGKTTLAHVIAHEL----GVNLRVTSG   68 (239)
T ss_dssp             EECCTTSCHHHHHHHHHHHH----TCCEEEEET
T ss_pred             EECCCCCCHHHHHHHHHHHh----CCCeEeccC
Confidence            47889999999999988765    334444443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.018  Score=43.67  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.| -+..|+|||++..++...+.. .|..++++|..
T Consensus        53 ~~I-~G~tGsGKT~~l~~li~~~~~-~g~~~iiiD~k   87 (433)
T d1e9ra_          53 LLV-NGATGTGKSVLLRELAYTGLL-RGDRMVIVDPN   87 (433)
T ss_dssp             EEE-EECTTSSHHHHHHHHHHHHHH-TTCEEEEEEET
T ss_pred             EEE-EeCCCCcHHHHHHHHHHHHHh-CCCCEEEEeCC
Confidence            444 468899999999999988888 99999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.018  Score=40.00  Aligned_cols=41  Identities=22%  Similarity=0.110  Sum_probs=30.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHH-----hCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~-----~~g~rVlliD~D~~~   73 (168)
                      .+.++.+.+|+|||++|.++|...+.     ..+..|+.+|.....
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF   83 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHH
Confidence            45555789999999999999986543     034578888887644

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.038  Score=37.85  Aligned_cols=33  Identities=30%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             cCCCCCChhhHHHHHHHHHHH------hCCCeEEEEeCC
Q 030973           38 SGKGGVGKSTTAVNLAVALAS------KCQLKVGLLDAD   70 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~------~~g~rVlliD~D   70 (168)
                      -+.+|+|||+++..||..+..      ..+++++.+|..
T Consensus        49 vG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~   87 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG   87 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred             EecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHH
Confidence            488999999999999999985      246777777754

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.99  E-value=0.026  Score=39.42  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ...-|+|||+++...+..++. .|+||++|-
T Consensus        64 ~apTGsGKT~~~~~~~~~~~~-~~~rvliv~   93 (237)
T d1gkub1          64 TAPTGVGKTSFGLAMSLFLAL-KGKRCYVIF   93 (237)
T ss_dssp             CCCBTSCSHHHHHHHHHHHHT-TSCCEEEEE
T ss_pred             EecCCChHHHHHHHHHHHHHH-hcCeEEEEe
Confidence            467899999988888888888 899999886

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.97  E-value=0.017  Score=41.50  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=25.2

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCC---CeEEEEeCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQ---LKVGLLDAD   70 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g---~rVlliD~D   70 (168)
                      +.+.+|+||||++++.+..+.+..+   .+||++-..
T Consensus        19 I~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          19 VLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             EEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            4577999999998887666654123   589999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.90  E-value=0.025  Score=40.98  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCC----CeEEEEeCCC
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQ----LKVGLLDADV   71 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g----~rVlliD~D~   71 (168)
                      +.+.+|+||||++++-+..+.. .+    .+++++-...
T Consensus        29 V~g~aGSGKTt~l~~ri~~ll~-~~~~~p~~il~lt~t~   66 (318)
T d1pjra1          29 IMAGAGSGKTRVLTHRIAYLMA-EKHVAPWNILAITFTN   66 (318)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHH-TTCCCGGGEEEEESSH
T ss_pred             EEecCCccHHHHHHHHHHHHHH-cCCCCHHHeEeEeccH
Confidence            4567899999999886666655 33    4788887654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.017  Score=38.50  Aligned_cols=19  Identities=26%  Similarity=0.171  Sum_probs=16.7

Q ss_pred             cCCCCCChhhHHHHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+|+||||.|..||..+
T Consensus         6 ~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EESTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4788999999999998776

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.73  E-value=0.045  Score=34.11  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=25.5

Q ss_pred             CeEEEEecCCCCCChhhHHH-HHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAV-NLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~-~LA~~la~~~g~rVlliD~   69 (168)
                      .+.+.+ +.-.|+|||..+. .+...+.+ .+++++++--
T Consensus         7 ~~~~il-~~~tGsGKT~~~~~~~~~~~~~-~~~~vli~~p   44 (140)
T d1yksa1           7 GMTTVL-DFHPGAGKTRRFLPQILAECAR-RRLRTLVLAP   44 (140)
T ss_dssp             TCEEEE-CCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEES
T ss_pred             CCcEEE-EcCCCCChhHHHHHHHHHHhhh-cCceeeeeec
Confidence            444444 5559999998875 44556666 8888888764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.70  E-value=0.01  Score=40.16  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=19.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      .+.+.++-|--|+||||++..|+..+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34455557899999999988877644

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.014  Score=40.46  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=22.7

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +++.|+| .+--|+||||.+..|+..|..
T Consensus         2 kGk~I~i-EG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILI-EGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEE-EESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEE-ECCCCCcHHHHHHHHHHHHHh
Confidence            3667776 677799999999999988855

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.013  Score=41.05  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHH
Q 030973           35 AVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .++.+.+|+||||++..+|..+..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~~   59 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIFG   59 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHhhcC
Confidence            346789999999999999998854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.022  Score=39.29  Aligned_cols=34  Identities=35%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDAD   70 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~D   70 (168)
                      +..+..|+||||+|..+|..+.. .  +..++.+++.
T Consensus        40 ll~Gp~G~GKTt~a~~la~~l~~-~~~~~~~~~~n~~   75 (224)
T d1sxjb2          40 IISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNAS   75 (224)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTT
T ss_pred             EEECCCCCCchhhHHHHHHHHhc-ccccccccccccc
Confidence            34677999999999999998875 3  2345555544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.66  E-value=0.048  Score=36.66  Aligned_cols=32  Identities=28%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +...-|+|||.++..++.......++++++|=
T Consensus        28 v~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          28 IVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             EEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            34678999999888888766553678887764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.64  E-value=0.022  Score=40.08  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ||||.|+++.+|.|+.     +|..|++ .|.+|+++|.+.
T Consensus         1 mkVvlITGas~GIG~a-----iA~~la~-~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAA-----TRKVLEA-AGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCh
Confidence            6899999999988875     6888999 999999999864

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.62  E-value=0.036  Score=37.86  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=28.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .++|+|++   -.||||++.-++..|.+ .|+++..+-
T Consensus        12 ~~~I~ITG---TnGKTTt~~~l~~iL~~-~~~~~~~~~   45 (215)
T d1p3da3          12 RHGIAVAG---THGKTTTTAMISMIYTQ-AKLDPTFVN   45 (215)
T ss_dssp             SEEEEEES---SSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred             CCEEEEEC---CCCHHHHHHHHHHHHHh-CCCCceEee
Confidence            57899874   56999999999999999 998887654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.44  E-value=0.037  Score=39.23  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +-|. ..+.+|+|||+++..+|.   + .|.+++.|++.
T Consensus        43 ~giL-l~GppGtGKT~la~aia~---~-~~~~~~~i~~~   76 (247)
T d1ixza_          43 KGVL-LVGPPGVGKTHLARAVAG---E-ARVPFITASGS   76 (247)
T ss_dssp             SEEE-EECCTTSSHHHHHHHHHH---H-TTCCEEEEEHH
T ss_pred             ceEE-EecCCCCChhHHHHHHHH---H-cCCCEEEEEhH
Confidence            3444 467889999999999986   3 57788888763

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.42  E-value=0.028  Score=36.93  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=21.5

Q ss_pred             cCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           38 SGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      .+..|+||||++..++..+.. ....+..
T Consensus         6 ~G~~G~GKSTLl~~i~~~l~~-~~g~~~~   33 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVERLGK-RAIGFWT   33 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHHGG-GEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHhcCCC-CcceEEE
Confidence            578899999999999998876 4334443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.37  E-value=0.027  Score=38.99  Aligned_cols=34  Identities=35%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhC--CCeEEEEeC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDA   69 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~--g~rVlliD~   69 (168)
                      .+.+|..|+||||++..+|..+.. .  +..++-+++
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~~-~~~~~~~~e~n~   83 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNA   83 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHh-cccCCCeeEEec
Confidence            345888999999999999998764 2  234554543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.35  E-value=0.048  Score=40.02  Aligned_cols=52  Identities=23%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCCC--CcccccccC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP--SVPMMMKID   83 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~~--~l~~~~~~~   83 (168)
                      +..+.++.+..|+|||.+|..||..+.. .+.+++-+|+-....  ....++|..
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~-~~~~~~~~~~~~~~~~~~~~~L~g~~  105 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEYMEKHAVSRLIGAP  105 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHS-SGGGEEEECTTTCCSSGGGGGC----
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcC-CCcceEEEeccccccchhhhhhcCCC
Confidence            3434456788899999999999999977 677888898866542  334455543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.35  E-value=0.017  Score=42.92  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .++-+--|+||||++..|+..+.. .|.+|+++.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~-~g~~v~~~~   40 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI-TPNRILLIG   40 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT-SGGGEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh-cCCceEEEe
Confidence            555778899999999999999988 889999886

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.067  Score=36.08  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=27.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      .++|+|++   -.||||++.-|+..|.. .|+++-+.
T Consensus        11 ~~vI~VTG---T~GKTTt~~~l~~iL~~-~g~~~~~~   43 (204)
T d2jfga3          11 APIVAITG---SNGKSTVTTLVGEMAKA-AGVNVGVG   43 (204)
T ss_dssp             SCEEEEEC---SSSHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             CCEEEEEC---CCCHHHHHHHHHHHHHh-cCCCcccC
Confidence            67999975   45899999999999999 99888654

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.23  E-value=0.064  Score=38.77  Aligned_cols=39  Identities=33%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      +.++.++|.|+   |--||||++.-++..|.+ .|+||-++-.
T Consensus        35 P~~~lkvI~VT---GTNGKtST~~~i~~IL~~-~G~kvG~~tS   73 (296)
T d2gc6a2          35 PQQQGRYIHVT---GTNGKGSAANAIAHVLEA-SGLTVGLYTA   73 (296)
T ss_dssp             GGGSSCEEEEE---CSSSHHHHHHHHHHHHHH-TTCCEEEECS
T ss_pred             chhhCCEEEEe---ccCcHHHHHHHHHHHHHh-cCCceeeeec
Confidence            44568999998   455899999999999999 9999987643

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.21  E-value=0.42  Score=30.57  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|-++.+.=.+||||-....+..+.. .|++|++|--..
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~~~~~-~g~~vl~i~~~~   45 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIRRAKI-AKQKIQVFKPEI   45 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC-
T ss_pred             eEEEEEeccccHHHHHHHHHHHHhhh-cCCcEEEEEecc
Confidence            44555566689999999999999988 999999986433

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.052  Score=40.61  Aligned_cols=37  Identities=35%  Similarity=0.425  Sum_probs=26.9

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHh---CCCeEEEEe
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLD   68 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~---~g~rVlliD   68 (168)
                      +-++++.+.+|+||||+...+...+.+.   .+.+|++.-
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            3477888999999999988876666541   455676654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.0091  Score=41.52  Aligned_cols=27  Identities=26%  Similarity=0.198  Sum_probs=22.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +|.|+| -|--|+||||++..|+..|..
T Consensus         2 ~k~I~i-eG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISI-EGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEE-ECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHhc
Confidence            677877 567799999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.09  E-value=0.031  Score=38.56  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=28.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHh--CCCeEEEEeCCCCC
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASK--CQLKVGLLDADVYG   73 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~--~g~rVlliD~D~~~   73 (168)
                      .++++..|+||||++..+|..+...  .....+-++.....
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~   76 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER   76 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred             EEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccc
Confidence            3457899999999999999987541  24566666665433

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.07  E-value=0.085  Score=33.18  Aligned_cols=34  Identities=32%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..-+++....-|+|||+++..   .+.+ .|++|+++=
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~---~~~~-~~~~vli~~   40 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPA---AYAA-QGYKVLVLN   40 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHH---HHHT-TTCCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHH---HHHH-cCCcEEEEc
Confidence            334566677889999987643   3456 788888774

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.86  E-value=0.044  Score=36.67  Aligned_cols=29  Identities=38%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      +-+|++ .+..|+||||+|-.    |.+ .|.+|+
T Consensus         3 p~IIgi-tG~~gSGKstva~~----l~~-~g~~~~   31 (191)
T d1uf9a_           3 PIIIGI-TGNIGSGKSTVAAL----LRS-WGYPVL   31 (191)
T ss_dssp             CEEEEE-EECTTSCHHHHHHH----HHH-TTCCEE
T ss_pred             CEEEEE-ECCCCCCHHHHHHH----HHH-CCCeEE
Confidence            456666 56789999998754    456 787764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.073  Score=37.83  Aligned_cols=36  Identities=17%  Similarity=0.144  Sum_probs=27.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ++.+. ..+.+|+|||+++..+|..+    |..++.|++.-
T Consensus        45 ~~~iL-L~GppGtGKT~la~~iA~~~----~~~~~~i~~~~   80 (256)
T d1lv7a_          45 PKGVL-MVGPPGTGKTLLAKAIAGEA----KVPFFTISGSD   80 (256)
T ss_dssp             CCEEE-EECCTTSCHHHHHHHHHHHH----TCCEEEECSCS
T ss_pred             CCeEE-eeCCCCCCccHHHHHHHHHc----CCCEEEEEhHH
Confidence            34454 46788999999999998755    66788887743

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.57  E-value=0.055  Score=40.55  Aligned_cols=33  Identities=21%  Similarity=0.017  Sum_probs=24.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ..++.+.+|+|||++|..||..+    |.+++-|++-
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~~~----~~~~i~in~s  188 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLELC----GGKALNVNLP  188 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc----CCCEEEEECc
Confidence            44557788999999999998866    4567766543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.044  Score=36.71  Aligned_cols=24  Identities=25%  Similarity=0.279  Sum_probs=18.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVA   55 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~   55 (168)
                      +.+.|+++..|+||||+...|...
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh
Confidence            334555888999999998776653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.044  Score=37.68  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=24.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.+ .+..|+||||++..+|..+.. .......++.+
T Consensus        38 lLl-~Gp~G~GKttl~~~la~~l~~-~~~~~~~~e~~   72 (227)
T d1sxjc2          38 LLF-YGPPGTGKTSTIVALAREIYG-KNYSNMVLELN   72 (227)
T ss_dssp             EEE-ECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEEC
T ss_pred             EEE-ECCCCCChhHHHHHHHHHhhc-CCCcceeEEec
Confidence            444 678999999999999998865 44333333333

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.23  E-value=0.047  Score=38.56  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=25.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+.|.++ +.+|+|||++|..+|..+    |..++-+++
T Consensus        40 ~~~vLL~-GppGtGKT~la~alA~~~----~~~~~~i~~   73 (246)
T d1d2na_          40 LVSVLLE-GPPHSGKTALAAKIAEES----NFPFIKICS   73 (246)
T ss_dssp             EEEEEEE-CSTTSSHHHHHHHHHHHH----TCSEEEEEC
T ss_pred             CeEEEEE-CcCCCCHHHHHHHHhhcc----ccccccccc
Confidence            4567665 667999999999988654    667776664

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.20  E-value=0.051  Score=39.65  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ++.|.++ +.+|+|||.+|-.||..+    +.....+|+-..
T Consensus        49 ~~~iLl~-GPpG~GKT~lAkalA~~~----~~~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMI-GPTGVGKTEIARRLAKLA----NAPFIKVEATKF   85 (309)
T ss_dssp             CCCEEEE-CCTTSSHHHHHHHHHHHH----TCCEEEEEGGGG
T ss_pred             CceEEEE-CCCCCCHHHHHHHHhhcc----ccchhccccccc
Confidence            4556664 888999999999998865    446777776543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.085  Score=38.60  Aligned_cols=47  Identities=26%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC--CCcccccccC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG--PSVPMMMKID   83 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~--~~l~~~~~~~   83 (168)
                      .+++| .+..|+|||.+|..||..+    +.+.+.+|+-...  +....++|..
T Consensus        53 ~~~lf-~Gp~GvGKT~lak~la~~l----~~~~i~~d~s~~~~~~~~~~l~g~~  101 (315)
T d1r6bx3          53 GSFLF-AGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMERHTVSRLIGAP  101 (315)
T ss_dssp             EEEEE-ECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred             eEEEE-ECCCcchhHHHHHHHHhhc----cCCeeEeccccccchhhhhhhcccC
Confidence            35554 5888999999999999876    4578888876533  2344455543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.11  Score=37.16  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=26.0

Q ss_pred             cCCCCCChhhHHHHHHHHHHH------hCCCeEEEEeCCC
Q 030973           38 SGKGGVGKSTTAVNLAVALAS------KCQLKVGLLDADV   71 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~~la~------~~g~rVlliD~D~   71 (168)
                      -+.+|+|||+++..||..+..      ..+++|.-+|+..
T Consensus        45 VG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~   84 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS   84 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred             ECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech
Confidence            478999999999999999887      1346666666543

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.96  E-value=0.099  Score=35.38  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      .++|+|++   -.||||++.-|+..|.. .|+++-.
T Consensus        14 ~~~iAITG---TnGKTTt~~~l~~iL~~-~g~~~~~   45 (207)
T d1j6ua3          14 KEEFAVTG---TDGKTTTTAMVAHVLKH-LRKSPTV   45 (207)
T ss_dssp             CCEEEEEC---SSSHHHHHHHHHHHHHH-TTCCCEE
T ss_pred             CCEEEEEC---CCCHHHHHHHHHHHHHh-CCCCCeE
Confidence            68999965   56999999999999999 8887443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.036  Score=39.27  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      +..|+++ +..|+||||+...|+..+.- ..-+|.+
T Consensus        29 Ge~vaIv-G~sGsGKSTLl~ll~gl~~p-~~G~I~i   62 (241)
T d2pmka1          29 GEVIGIV-GRSGSGKSTLTKLIQRFYIP-ENGQVLI   62 (241)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHhcCCC-CCCEEEE
Confidence            7788886 56799999999888876643 2234444

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.065  Score=37.49  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+..
T Consensus         5 GKvalITGas~GIG~a-----ia~~la~-~G~~V~~~~r~~~   40 (248)
T d2o23a1           5 GLVAVITGGASGLGLA-----TAERLVG-QGASAVLLDLPNS   40 (248)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEECTTS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCChH
Confidence            8899999999988876     6788999 9999999998763

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.84  E-value=0.059  Score=37.53  Aligned_cols=36  Identities=22%  Similarity=0.064  Sum_probs=25.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+.|.+ .+.+|+|||+++..++..    .+.....+++..
T Consensus        29 ~~~i~i-~G~~G~GKTsLl~~~~~~----~~~~~~~i~~~~   64 (283)
T d2fnaa2          29 APITLV-LGLRRTGKSSIIKIGINE----LNLPYIYLDLRK   64 (283)
T ss_dssp             SSEEEE-EESTTSSHHHHHHHHHHH----HTCCEEEEEGGG
T ss_pred             CCEEEE-EcCCCCcHHHHHHHHHHH----CCCCeEEEEecc
Confidence            445554 678899999999877654    455777777654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.81  E-value=0.072  Score=40.37  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .+=+.++++.-|+||||+.+.+-..+.. .+++++-|+ ||
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~-~~~~i~tiE-dP  195 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVE-DP  195 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEEE-SS
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcC-CCceEEEec-cC
Confidence            4456666888899999999999888876 677888777 44

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.77  E-value=0.063  Score=35.70  Aligned_cols=25  Identities=36%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +++|. .++.+|+||||++..|...+
T Consensus         2 G~iiv-l~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVV-LSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEE-EECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEE-EECCCCCCHHHHHHHHHhhC
Confidence            34455 57889999999988776554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.2  Score=29.49  Aligned_cols=36  Identities=8%  Similarity=0.138  Sum_probs=26.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .|.|+|+    |-|+|-.+  .|..|++ .|.+|.+.|.....
T Consensus         5 ~K~v~Vi----GlG~sG~s--~a~~L~~-~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVII----GLGLTGLS--CVDFFLA-RGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEE----CCSHHHHH--HHHHHHH-TTCCCEEEESSSSC
T ss_pred             CCEEEEE----eECHHHHH--HHHHHHH-CCCEEEEeeCCcCc
Confidence            3445665    67887665  4788999 99999999987654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.051  Score=37.67  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +|.|+| -|--|+||||++..|+..|..
T Consensus         2 pk~Ivi-EG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSI-EGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEE-ECCCCCcHHHHHHHHHHHHhh
Confidence            455665 678899999999999988765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.072  Score=37.59  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=31.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         3 GKvalITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   37 (254)
T d2gdza1           3 GKVALVTGAAQGIGRA-----FAEALLL-KGAKVALVDWNL   37 (254)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998886     6788899 999999999875

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=90.97  E-value=0.12  Score=37.08  Aligned_cols=31  Identities=23%  Similarity=0.126  Sum_probs=27.1

Q ss_pred             CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           40 KGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        40 kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +-|+|||.+++..|...|. .|+.|.+|-.+.
T Consensus       101 ~TGEGKTL~a~l~a~l~al-~g~~vhvvTvNd  131 (273)
T d1tf5a3         101 KTGEGKTLTSTLPVYLNAL-TGKGVHVVTVNE  131 (273)
T ss_dssp             CTTSCHHHHHHHHHHHHHT-TSSCEEEEESSH
T ss_pred             cCCCcchhHHHHHHHHHHh-cCCCceEEecCc
Confidence            6799999888888888888 999999998775

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.93  E-value=0.098  Score=36.39  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +|+|.|+++.+|.|+.     +|..|++ .|.+|.++|.+...
T Consensus         2 gK~vlITGas~GIG~a-----~a~~l~~-~G~~V~~~~~~~~~   38 (236)
T d1dhra_           2 ARRVLVYGGRGALGSR-----CVQAFRA-RNWWVASIDVVENE   38 (236)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHT-TTCEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEEeCCccc
Confidence            7899999999998875     6788999 99999999987643

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.80  E-value=0.088  Score=35.38  Aligned_cols=23  Identities=43%  Similarity=0.439  Sum_probs=19.0

Q ss_pred             EecCCCCCChhhHHHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      |+++..|+||||++..|+..+..
T Consensus         4 vl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           4 VLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHhCCC
Confidence            45788999999999888887754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.78  E-value=0.099  Score=37.00  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=25.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      .+-|.+ .+.+|+|||+++..+|..    .+..++.+++.
T Consensus        38 ~~giLL-~GppGtGKT~l~~ala~~----~~~~~~~i~~~   72 (258)
T d1e32a2          38 PRGILL-YGPPGTGKTLIARAVANE----TGAFFFLINGP   72 (258)
T ss_dssp             CCEEEE-ECCTTSSHHHHHHHHHHH----TTCEEEEECHH
T ss_pred             CceeEE-ecCCCCCchHHHHHHHHH----hCCeEEEEEch
Confidence            344555 588899999998887774    46678877753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.72  E-value=0.13  Score=38.86  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=25.3

Q ss_pred             CCCCCChhhHHHHHHHHHHH------hCCCeEEEEeCCC
Q 030973           39 GKGGVGKSTTAVNLAVALAS------KCQLKVGLLDADV   71 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~------~~g~rVlliD~D~   71 (168)
                      +.+|||||+++-.||..+..      ..+++++-+|+..
T Consensus        50 G~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~   88 (387)
T d1qvra2          50 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS   88 (387)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh
Confidence            67899999999999999887      1246777777754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.39  E-value=0.11  Score=36.65  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|.+..
T Consensus         5 GK~alITGas~GIG~a-----ia~~la~-~G~~V~~~~~~~~   40 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRA-----IAQAFAR-EGALVALCDLRPE   40 (248)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCHH
Confidence            7899999999998876     6788999 9999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.14  Score=34.89  Aligned_cols=33  Identities=39%  Similarity=0.584  Sum_probs=23.3

Q ss_pred             Ce-EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KD-VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~-vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |+ +|+++ +.-|+||||+|-    .|.+ .|.+  ++|+|.
T Consensus         2 mk~iIgit-G~igSGKStv~~----~l~~-~G~~--vidaD~   35 (208)
T d1vhta_           2 LRYIVALT-GGIGSGKSTVAN----AFAD-LGIN--VIDADI   35 (208)
T ss_dssp             CCEEEEEE-CCTTSCHHHHHH----HHHH-TTCE--EEEHHH
T ss_pred             CCEEEEEE-CCCcCCHHHHHH----HHHH-CCCc--EEEchH
Confidence            56 67774 566999999875    4566 7865  557765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.28  E-value=0.098  Score=37.49  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus        24 ~gK~alITGas~GIG~a-----iA~~la~-~Ga~Vii~~r~~   59 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKG-----MTTLLSS-LGAQCVIASRKM   59 (294)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence            36999999999998876     6778899 999999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.09  E-value=0.11  Score=36.67  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gK~~lITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   39 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFG-----IAQGLAE-AGCSVVVASRNL   39 (251)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999988875     6788999 999999999875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.06  E-value=0.062  Score=38.23  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=25.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +..+++++ ..|+||||++..|+-.+.- ..-+|.+=+.|
T Consensus        41 Ge~iaivG-~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~   78 (253)
T d3b60a1          41 GKTVALVG-RSGSGKSTIASLITRFYDI-DEGHILMDGHD   78 (253)
T ss_dssp             TCEEEEEE-CTTSSHHHHHHHHTTTTCC-SEEEEEETTEE
T ss_pred             CCEEEEEC-CCCChHHHHHHHHhcccCC-CccEEEECCcc
Confidence            77888865 7799999999888765543 33345443333

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.11  Score=36.52  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         7 Gkv~lITGas~GIG~~-----ia~~la~-~G~~V~l~~r~~   41 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRL-----TAYEFAK-LKSKLVLWDINK   41 (244)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6788999 999999999876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=89.98  E-value=0.21  Score=33.42  Aligned_cols=29  Identities=31%  Similarity=0.396  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      .+-|.| .+++|+||||+|..    |.+ +|++.+
T Consensus        14 g~gvl~-~G~sG~GKStlal~----l~~-~g~~lv   42 (176)
T d1kkma_          14 GLGVLI-TGDSGVGKSETALE----LVQ-RGHRLI   42 (176)
T ss_dssp             TEEEEE-ECCTTSCHHHHHHH----HHH-TTCEEE
T ss_pred             CEEEEE-EeCCCCCHHHHHHH----HHH-cCCeEE
Confidence            455555 58999999998865    445 677644

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.80  E-value=0.1  Score=35.25  Aligned_cols=30  Identities=20%  Similarity=-0.082  Sum_probs=20.8

Q ss_pred             ecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        37 ~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ....-|+|||+++......... .+.||++|
T Consensus        45 l~apTGsGKT~~a~l~i~~~~~-~~~~vl~l   74 (202)
T d2p6ra3          45 LAMPTAAGKTLLAEMAMVREAI-KGGKSLYV   74 (202)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             EEcCCCCchhHHHHHHHHHHhh-ccCcceee
Confidence            4567789999887554444445 67788877

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.74  E-value=0.093  Score=36.18  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      |++.|+++.+|.|+.     +|..|++ .|.+|++.|-+...
T Consensus         2 K~alITGas~GIG~a-----iA~~la~-~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRA-----AALALKA-RGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHH-----HHHHHHH-HTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCccc
Confidence            578899999998875     7888999 99999999988754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.73  E-value=0.12  Score=35.27  Aligned_cols=27  Identities=15%  Similarity=0.242  Sum_probs=21.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.+.+ .+..|+||||+|..+|..+-.
T Consensus        24 ~h~lLl-~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLI-QALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEE-ECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEE-ECCCCCcHHHHHHHHHHhccc
Confidence            445555 667899999999999998853

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.13  Score=36.40  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+     .+|..|++ .|.+|++.|-|.
T Consensus        10 ~Kv~lITGas~GIG~-----aiA~~la~-~G~~Vv~~~r~~   44 (257)
T d1xg5a_          10 DRLALVTGASGGIGA-----AVARALVQ-QGLKVVGCARTV   44 (257)
T ss_dssp             TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence            689999999998887     47788999 999999999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.12  Score=36.16  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         7 GK~~lITGas~GIG~a-----ia~~la~-~G~~V~~~~r~~   41 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRG-----TVQALHA-TGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence            7899999999998875     7788999 999999999764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.57  E-value=0.12  Score=34.49  Aligned_cols=23  Identities=39%  Similarity=0.458  Sum_probs=18.4

Q ss_pred             EecCCCCCChhhHHHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ++++..|+||||++..|+..+..
T Consensus         5 vl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           5 VISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEECCCCCCHHHHHHHHHHhCCc
Confidence            45789999999999888776543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.54  E-value=0.13  Score=36.29  Aligned_cols=35  Identities=29%  Similarity=0.263  Sum_probs=24.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +..++++ +..|+||||+...|+..+.- ..-+|++=
T Consensus        28 Ge~vaiv-G~sGsGKSTLl~ll~gl~~p-~~G~I~i~   62 (242)
T d1mv5a_          28 NSIIAFA-GPSGGGKSTIFSLLERFYQP-TAGEITID   62 (242)
T ss_dssp             TEEEEEE-CCTTSSHHHHHHHHTTSSCC-SBSCEEET
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHhhCC-CCCEEEEC
Confidence            7788885 57799999998888766643 33355553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.50  E-value=0.22  Score=35.73  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCC-eEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~-rVlliD~D~   71 (168)
                      +++.++++++. |+|||+++..++...++ .+. -++++=.+.
T Consensus        67 kGQr~~If~~~-g~GKt~l~~~i~~~~~~-~~~~v~V~~~iGe  107 (276)
T d2jdid3          67 KGGKIGLFGGA-GVGKTVLIMELINNVAK-AHGGYSVFAGVGE  107 (276)
T ss_dssp             TTCEEEEEECT-TSSHHHHHHHHHHHHTT-TCSSEEEEEEESC
T ss_pred             CCCEEEeeCCC-CCCHHHHHHHHHHHHHh-hCCCeEEEEEecc
Confidence            36678887765 89999999999988765 332 233444443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.32  E-value=0.14  Score=36.17  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+..
T Consensus         9 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLA-----FTRAVAA-AGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHH-----HHHHHHH-TTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCHH
Confidence            7899999999998876     6788999 9999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.11  Score=36.96  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=24.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA   69 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~   69 (168)
                      .+.|.+ .+..|+|||+++.++|..+    |...+.+++
T Consensus        41 ~~giLL-~Gp~GtGKT~l~~ala~~~----~~~~~~~~~   74 (265)
T d1r7ra3          41 SKGVLF-YGPPGCGKTLLAKAIANEC----QANFISIKG   74 (265)
T ss_dssp             CCEEEE-BCCTTSSHHHHHHHHHHHT----TCEEEEECH
T ss_pred             CCeEEE-ECCCCCcchhHHHHHHHHh----CCcEEEEEH
Confidence            344554 6788999999999987755    556666654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.26  E-value=0.14  Score=36.17  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         5 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   39 (260)
T d1zema1           5 GKVCLVTGAGGNIGLA-----TALRLAE-EGTAIALLDMNR   39 (260)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998874     6788999 999999999875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.19  E-value=0.14  Score=37.65  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ++-+.++.+.+|+|||.+|..||..+..
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcC
Confidence            4556666789999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.15  Score=34.87  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=18.0

Q ss_pred             EEEecCCCCCChhhHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +.++++.+|+||||+.-.|....
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            44458899999999998776654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.14  Score=35.60  Aligned_cols=27  Identities=37%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .+.+ ++++..|+||||+|..++..+-.
T Consensus        34 ~~~~-Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAY-LFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeE-EEECCCCCcHHHHHHHHHHHhcC
Confidence            3444 45778999999999999988865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.09  E-value=0.096  Score=37.25  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +..++++ +..|+||||+...|+..+.- ..-+|.+=+.|
T Consensus        44 Ge~vaiv-G~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~   81 (255)
T d2hyda1          44 GETVAFV-GMSGGGKSTLINLIPRFYDV-TSGQILIDGHN   81 (255)
T ss_dssp             TCEEEEE-CSTTSSHHHHHTTTTTSSCC-SEEEEEETTEE
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHhcCCc-cccccccCCEE
Confidence            6778885 57799999998766654433 22345443333

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.04  E-value=0.064  Score=39.51  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      ++++..|+||||+...|...+-  .+.|++.|+-.
T Consensus       170 li~G~tgSGKTT~l~al~~~i~--~~~rivtiEd~  202 (323)
T d1g6oa_         170 IVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDT  202 (323)
T ss_dssp             EEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESS
T ss_pred             EEEeeccccchHHHHHHhhhcc--cccceeeccch
Confidence            4588889999999988887664  46788888543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.01  E-value=0.15  Score=35.74  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+..
T Consensus         5 gKvalVTGas~GIG~a-----ia~~la~-~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRA-----IAERFAV-EGADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCch
Confidence            6899999999998876     6788999 9999999998753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.95  E-value=0.15  Score=35.98  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         8 GK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   42 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYG-----IVEELAS-LGASVYTCSRNQ   42 (259)
T ss_dssp             TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998884     6888999 999999999764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.94  E-value=0.14  Score=36.14  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gK~alVTGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   39 (256)
T d1k2wa_           5 GKTALITGSARGIGRA-----FAEAYVR-EGARVAIADINL   39 (256)
T ss_dssp             TEEEEEETCSSHHHHH-----HHHHHHH-TTEEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999999974     7788999 999999999765

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.75  E-value=0.15  Score=36.09  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         6 gKvalITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   40 (268)
T d2bgka1           6 DKVAIITGGAGGIGET-----TAKLFVR-YGAKVVIADIAD   40 (268)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6788999 999999999875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.73  E-value=0.13  Score=36.57  Aligned_cols=35  Identities=14%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gK~alVTGas~GIG~a-----ia~~la~-~Ga~V~l~~r~~   39 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRT-----TAILFAQ-EGANVTITGRSS   39 (272)
T ss_dssp             TCEEEETTCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCcCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998885     7788999 999999999775

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=88.59  E-value=0.17  Score=31.96  Aligned_cols=17  Identities=29%  Similarity=0.419  Sum_probs=14.2

Q ss_pred             cCCCCCChhhHHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLAV   54 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA~   54 (168)
                      -+.+|+||||+...+..
T Consensus         6 vG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            48899999999987753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.34  E-value=0.17  Score=35.73  Aligned_cols=35  Identities=31%  Similarity=0.534  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         4 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   38 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRA-----TAVRLAA-EGAKLSLVDVSS   38 (258)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998886     6788899 999999999875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=88.30  E-value=0.34  Score=31.75  Aligned_cols=111  Identities=16%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC--eEEEEeCCCCCCCcccccccCCC------CCccccCceeecccCCe
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDADVYGPSVPMMMKIDQK------PEVTKDMKMVPIENYGV  102 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~--rVlliD~D~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~  102 (168)
                      .+.|++++. |.+|.|     +|..++. .|.  .++++|.+... .-...+++...      ................+
T Consensus        20 ~~KV~IIGa-G~VG~~-----~A~~l~~-~~l~~ElvLiD~~~~~-a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adi   91 (160)
T d1i0za1          20 NNKITVVGV-GQVGMA-----CAISILG-KSLADELALVDVLEDK-LKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKI   91 (160)
T ss_dssp             SSEEEEECC-SHHHHH-----HHHHHHH-TTCCSEEEEECSCHHH-HHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSE
T ss_pred             CCeEEEECC-CHHHHH-----HHHHHHh-cCCCcEEEEEEeccch-hHHHHHHHhccccccCCCeEEeccchhhcccccE
Confidence            456788764 777776     4555565 554  89999987532 11122222111      11111111222333455


Q ss_pred             eeeecCccCCCCCCcccCchhHHHHHHHHHHhhcCCCCc-EEEEeCCC
Q 030973          103 KCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLD-ILVIDMPP  149 (168)
Q Consensus       103 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~yD-~IiiD~p~  149 (168)
                      -++..|....+.+.....-......++++...++...+| ++|+=+.|
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            566666433322222211122344666666666633566 44444444

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.20  E-value=0.18  Score=33.78  Aligned_cols=37  Identities=27%  Similarity=0.203  Sum_probs=31.9

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      ..|++.|+++.||.|+.     +|..|++ .|.+|.+++-+..
T Consensus        22 ~gK~vlItGasgGIG~~-----ia~~la~-~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMR-----SAALLAG-EGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHH-----HHHHHHh-hccchhhcccchH
Confidence            47899999999998875     6788999 9999999998863

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=0.15  Score=36.07  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|++++-+.
T Consensus        14 GK~alITGassGIG~a-----iA~~la~-~G~~Vil~~r~~   48 (269)
T d1xu9a_          14 GKKVIVTGASKGIGRE-----MAYHLAK-MGAHVVVTARSK   48 (269)
T ss_dssp             TCEEEESSCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998875     7789999 999999999765

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.14  E-value=0.14  Score=37.83  Aligned_cols=33  Identities=30%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      +..++-+--|+||||++..|+..+.. .+ .++++
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~-~~-~v~~~   39 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG-GS-PTLYF   39 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC-SS-CEEEE
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc-CC-CeEEE
Confidence            34455788899999999999999876 44 66665

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.06  E-value=0.13  Score=34.23  Aligned_cols=28  Identities=29%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV   64 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rV   64 (168)
                      .+-|.| .+.+|+||||+|..|    .+ +|++.
T Consensus        15 g~gvli-~G~sg~GKS~la~~l----~~-~g~~l   42 (169)
T d1ko7a2          15 GVGVLI-TGDSGIGKSETALEL----IK-RGHRL   42 (169)
T ss_dssp             TEEEEE-EESTTSSHHHHHHHH----HH-TTCEE
T ss_pred             CEEEEE-EeCCCCCHHHHHHHH----HH-cCCeE
Confidence            444555 678899999987554    44 66653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.97  E-value=0.16  Score=35.54  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         4 gK~alITGas~GIG~a-----~a~~l~~-~G~~Vv~~~r~~   38 (243)
T d1q7ba_           4 GKIALVTGASRGIGRA-----IAETLAA-RGAKVIGTATSE   38 (243)
T ss_dssp             TCEEEESSCSSHHHHH-----HHHHHHH-TTCEEEEEESSH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEeCCH
Confidence            7899999999998886     6788999 999999999765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=0.19  Score=35.37  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         6 GK~alITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   40 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAG-----IVRAFVN-SGARVVICDKDE   40 (250)
T ss_dssp             TCEEEEETCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     7788999 999999998764

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.91  E-value=0.24  Score=35.10  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=22.8

Q ss_pred             EEEecCCCCCChhhHH-HHHHHHHHHhCCCeEEEE
Q 030973           34 IAVASGKGGVGKSTTA-VNLAVALASKCQLKVGLL   67 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a-~~LA~~la~~~g~rVlli   67 (168)
                      ..+....-|+|||+.. ..+...+.. .|.+|+++
T Consensus        11 ~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi   44 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLIL   44 (305)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEE
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEE
Confidence            4555778899999643 344444555 68899988

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.85  E-value=0.18  Score=36.56  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|.+..
T Consensus         7 gKvalITGas~GIG~a-----iA~~la~-~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRA-----YALAFAE-RGALVVVNDLGGD   42 (302)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEECCCBC
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEeCCch
Confidence            7899999999998886     6788999 9999999998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.77  E-value=0.12  Score=33.52  Aligned_cols=20  Identities=25%  Similarity=0.292  Sum_probs=13.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNL   52 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~L   52 (168)
                      .| |+++ +.+|+||||+...|
T Consensus        14 ~k-I~lv-G~~~vGKTsLl~~l   33 (186)
T d1f6ba_          14 GK-LVFL-GLDNAGKTTLLHML   33 (186)
T ss_dssp             EE-EEEE-EETTSSHHHHHHHH
T ss_pred             CE-EEEE-CCCCCCHHHHHHHH
Confidence            44 4443 67789999996554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=87.72  E-value=0.21  Score=31.79  Aligned_cols=16  Identities=38%  Similarity=0.505  Sum_probs=12.9

Q ss_pred             cCCCCCChhhHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLA   53 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA   53 (168)
                      -+.+|+||||+...+.
T Consensus        11 vG~~~vGKSSLi~~~~   26 (169)
T d1upta_          11 LGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            3689999999987653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.67  E-value=0.23  Score=33.54  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=23.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +-+|++ .+.-|+||||+|-    .|.+ .|..|  +|+|.
T Consensus         2 ~~iIgI-TG~igSGKStv~~----~l~~-~G~~v--idaD~   34 (205)
T d1jjva_           2 TYIVGL-TGGIGSGKTTIAN----LFTD-LGVPL--VDADV   34 (205)
T ss_dssp             CEEEEE-ECSTTSCHHHHHH----HHHT-TTCCE--EEHHH
T ss_pred             cEEEEE-ECCCCCCHHHHHH----HHHH-CCCeE--EEchH
Confidence            346667 5677999999864    4566 78766  57764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.63  E-value=0.2  Score=34.95  Aligned_cols=35  Identities=11%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gK~~lITGas~GIG~a-----ia~~l~~-~G~~V~~~~r~~   39 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRA-----TLELFAK-EGARLVACDIEE   39 (242)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998886     6788999 999999999775

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.57  E-value=0.21  Score=35.08  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .||..|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         2 gKValITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLE-----IARRLGK-EGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998874     7788999 999999999774

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.56  E-value=0.13  Score=34.49  Aligned_cols=29  Identities=24%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG   65 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVl   65 (168)
                      .+-|.| .+.+|+||||+|..|    .+ +|++.+
T Consensus        15 g~gvli-~G~sG~GKS~lal~l----~~-~G~~lv   43 (177)
T d1knxa2          15 GVGVLL-TGRSGIGKSECALDL----IN-KNHLFV   43 (177)
T ss_dssp             TEEEEE-EESSSSSHHHHHHHH----HT-TTCEEE
T ss_pred             CEEEEE-EcCCCCCHHHHHHHH----HH-cCCcee
Confidence            444555 578899999998665    35 677644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=87.50  E-value=0.17  Score=33.67  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHH
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      ...+.|+++ +.+|+||||+.-.|.
T Consensus        21 ~~~~~I~lv-G~~n~GKSTLin~L~   44 (195)
T d1svia_          21 GGLPEIALA-GRSNVGKSSFINSLI   44 (195)
T ss_dssp             SCCCEEEEE-EBTTSSHHHHHHHHH
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHhc
Confidence            335567775 789999999988774

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.50  E-value=0.17  Score=35.53  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus        10 nKvalITGas~GIG~a-----~a~~la~-~Ga~V~~~~r~~   44 (251)
T d2c07a1          10 NKVALVTGAGRGIGRE-----IAKMLAK-SVSHVICISRTQ   44 (251)
T ss_dssp             SCEEEEESTTSHHHHH-----HHHHHTT-TSSEEEEEESSH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence            6899999999998875     5778888 999999999764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.48  E-value=0.27  Score=32.23  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      ...|.+..+.=|+||||++..++..|.-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            4445555777799999999999998865

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=87.41  E-value=0.2  Score=35.28  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gK~alVTGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   39 (254)
T d1hdca_           5 GKTVIITGGARGLGAE-----AARQAVA-AGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998876     6788999 999999999765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.33  E-value=0.22  Score=34.80  Aligned_cols=35  Identities=20%  Similarity=0.154  Sum_probs=30.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         5 GK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRD-----TVKALHA-SGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999988875     6788899 999999999764

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.53  Score=33.40  Aligned_cols=42  Identities=31%  Similarity=0.418  Sum_probs=35.5

Q ss_pred             CeEEEEec-CCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s-~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      ||-|.|++ .-+|.||=.+|+.+|..|.. +|.||-++-+||.-
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~-~g~~V~~~K~DPYl   43 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI   43 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHh-CCceeEEEecccce
Confidence            34555554 46899999999999999999 99999999999954

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.30  E-value=0.15  Score=36.02  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         4 gK~alITGas~GIG~a-----iA~~la~-~Ga~V~~~~r~~   38 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLG-----IATALAA-QGADIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHH-----HHHHHHH-TTCEEEEECCSC
T ss_pred             cCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCc
Confidence            6899999999998876     6788999 999999999754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.16  E-value=0.22  Score=34.84  Aligned_cols=35  Identities=29%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         6 gK~alITGas~GIG~a-----ia~~la~-~G~~V~~~~r~~   40 (244)
T d1nffa_           6 GKVALVSGGARGMGAS-----HVRAMVA-EGAKVVFGDILD   40 (244)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998876     6678999 999999999875

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.11  E-value=0.23  Score=34.41  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         4 gK~~lVTGas~GIG~a-----ia~~l~~-~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRA-----VADVLSQ-EGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998876     6788999 999999999764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.08  E-value=0.39  Score=33.46  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=28.4

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        35 ~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      -+.-+--|+|||-++...+..... .|+.|+++=
T Consensus        79 ~LL~GdvGsGKT~V~~~a~~~~~~-~g~qv~~l~  111 (233)
T d2eyqa3          79 RLVCGDVGFGKTEVAMRAAFLAVD-NHKQVAVLV  111 (233)
T ss_dssp             EEEECCCCTTTHHHHHHHHHHHHT-TTCEEEEEC
T ss_pred             eEEEcCCCCCcHHHHHHHHHHHHH-cCCceEEEc
Confidence            334488899999999999999998 999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.95  E-value=0.18  Score=33.09  Aligned_cols=21  Identities=29%  Similarity=0.484  Sum_probs=16.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      .|+|.+  +-+|||||++...+-
T Consensus         3 ~Kivll--G~~~vGKTsl~~r~~   23 (195)
T d1svsa1           3 VKLLLL--GAGESGKSTIVKQMK   23 (195)
T ss_dssp             EEEEEE--CSTTSSHHHHHHHHH
T ss_pred             eEEEEE--CCCCCCHHHHHHHHh
Confidence            455554  899999999987764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.81  E-value=0.19  Score=35.71  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         4 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   38 (274)
T d1xhla_           4 GKSVIITGSSNGIGRS-----AAVIFAK-EGAQVTITGRNE   38 (274)
T ss_dssp             TCEEEETTCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6788999 999999999765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.78  E-value=0.23  Score=34.89  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ||+.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         2 KValITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKA-----IALRLVK-DGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            677889998888876     6788999 999999999875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=0.23  Score=35.77  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus        12 gKvalITGas~GIG~a-----ia~~la~-~Ga~Vvi~~r~~   46 (297)
T d1yxma1          12 GQVAIVTGGATGIGKA-----IVKELLE-LGSNVVIASRKL   46 (297)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6778899 999999999875

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.69  E-value=0.49  Score=33.72  Aligned_cols=30  Identities=17%  Similarity=0.050  Sum_probs=23.2

Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           39 GKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        39 ~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      ..-|.|||.+++.++..+....+.|+|+|=
T Consensus       135 ~pTGsGKT~i~~~i~~~~~~~~~~k~Liiv  164 (282)
T d1rifa_         135 LPTSAGRSLIQALLARYYLENYEGKILIIV  164 (282)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred             EEcccCccHHHHHHHHHhhhcccceEEEEE
Confidence            455899999999888777553677888875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=86.67  E-value=0.2  Score=32.43  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=15.1

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      .| |+++ +.+|+||||+...|.
T Consensus        16 ~k-I~vv-G~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          16 HK-VIIV-GLDNAGKTTILYQFS   36 (177)
T ss_dssp             EE-EEEE-ESTTSSHHHHHHHHH
T ss_pred             EE-EEEE-CCCCCCHHHHHHHHh
Confidence            44 4443 788999999987653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.66  E-value=0.24  Score=35.21  Aligned_cols=35  Identities=23%  Similarity=0.472  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         5 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~i~~r~~   39 (276)
T d1bdba_           5 GEAVLITGGASGLGRA-----LVDRFVA-EGAKVAVLDKSA   39 (276)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998876     6788999 999999999764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.22  Score=34.85  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         6 gK~alITGas~GIG~a-----ia~~la~-~G~~Vi~~~r~~   40 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQA-----AALAFAR-EGAKVIATDINE   40 (245)
T ss_dssp             TCEEEESSTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEeCCH
Confidence            6899999999988875     6788999 999999999875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=86.60  E-value=0.15  Score=33.19  Aligned_cols=15  Identities=33%  Similarity=0.386  Sum_probs=12.4

Q ss_pred             cCCCCCChhhHHHHH
Q 030973           38 SGKGGVGKSTTAVNL   52 (168)
Q Consensus        38 s~kgG~GKTt~a~~L   52 (168)
                      -+.+|+||||+...+
T Consensus        22 vG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EESTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            478999999998655

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.59  E-value=0.61  Score=33.09  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=36.2

Q ss_pred             CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +|-|.|+++ -+|.||=.+|+.+|..|.. +|.+|-++-+||.-
T Consensus         2 ~kyifvtGGV~S~lGKGi~~asig~ll~~-~g~~v~~~K~DpYl   44 (272)
T d1vcoa2           2 RKYVFITGGVVSSLGKGILTSSLGALLRA-RGYRVTAIKIDPYV   44 (272)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECSS
T ss_pred             ceEEEEeCCcccccccHHHHHHHHHHHHh-CCCceeEEeeccce
Confidence            455666654 5889999999999999999 99999999999965

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.59  E-value=0.19  Score=35.32  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=30.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         6 gK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~~~~   40 (253)
T d1hxha_           6 GKVALVTGGASGVGLE-----VVKLLLG-EGAKVAFSDINE   40 (253)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEECSCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            6899999999998875     6678899 999999999765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.59  Score=33.64  Aligned_cols=37  Identities=19%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             CCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        29 ~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      .+++.++++++. |+|||+++..++.........-|++
T Consensus        41 grGQr~~I~g~~-g~GKT~l~~~i~~~~~~~~~~~v~~   77 (289)
T d1xpua3          41 GRGQRGLIVAPP-KAGKTMLLQNIAQSIAYNHPDCVLM   77 (289)
T ss_dssp             BTTCEEEEEECS-SSSHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             cCCCeeeEeCCC-CCCHHHHHHHHHHHHhhcCCCeEEE
Confidence            347778887765 6899999999999887623333443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.58  E-value=0.21  Score=35.22  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         8 gK~alVTGas~GIG~a-----iA~~la~-~Ga~V~~~~r~~   42 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHA-----IVEEFAG-FGAVIHTCARNE   42 (259)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998885     6788999 999999999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.36  E-value=0.21  Score=35.39  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=31.1

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|++.|+++.+|.|+.     +|..|++ .|.+|++.|.+.
T Consensus        17 ~gK~~lITGas~GIG~a-----ia~~la~-~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGRE-----MAMELGR-RGCKVIVNYANS   52 (272)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEeCCc
Confidence            36899999999998876     5688999 999999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.35  E-value=0.53  Score=29.27  Aligned_cols=25  Identities=24%  Similarity=0.219  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           47 TTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        47 t~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .+...+|..|.+ .|+.|++||.|+.
T Consensus        10 ~~G~~la~~L~~-~g~~v~vid~d~~   34 (132)
T d1lssa_          10 RVGYTLAKSLSE-KGHDIVLIDIDKD   34 (132)
T ss_dssp             HHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             HHHHHHHHHHHH-CCCCcceecCChh
Confidence            456678899999 9999999999984

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=0.68  Score=32.73  Aligned_cols=42  Identities=31%  Similarity=0.431  Sum_probs=36.1

Q ss_pred             CeEEEEecC-CCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        31 ~~vI~v~s~-kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +|-|.|+++ -+|.||-.+|+.++..|.. +|.||-++-+||.-
T Consensus         3 tkyifvtGGV~S~lGKGi~~aSig~llk~-~g~~V~~~K~DPYl   45 (266)
T d1s1ma2           3 TNYIFVTGGVVSSLGKGIAAASLAAILEA-RGLNVTIMKLDPYI   45 (266)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECCS
T ss_pred             ceEEEEeCCcccccchHHHHHHHHHHHHh-CCceeEEEecccce
Confidence            455666654 5899999999999999999 99999999999964

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.2  Score=35.21  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus        10 ~gK~alITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   45 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKE-----IAITFAT-AGASVVVSDINA   45 (255)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHT-TTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            37899999999998876     5778899 999999999765

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.90  E-value=0.28  Score=33.79  Aligned_cols=35  Identities=20%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      .|.|+++.+|.|+     .+|..|++ .|.+|+++|.+...
T Consensus         4 kVlITGas~GIG~-----aia~~l~~-~G~~V~~~~~~~~~   38 (235)
T d1ooea_           4 KVIVYGGKGALGS-----AILEFFKK-NGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEETTTSHHHH-----HHHHHHHH-TTEEEEEEESSCCT
T ss_pred             EEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCchh
Confidence            3578998888887     57888999 99999999988643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.75  E-value=0.29  Score=30.75  Aligned_cols=16  Identities=31%  Similarity=0.287  Sum_probs=12.9

Q ss_pred             cCCCCCChhhHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLA   53 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA   53 (168)
                      -+.+|+||||+...|.
T Consensus         6 iG~~nvGKSSLln~l~   21 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLK   21 (166)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            4789999999987543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.69  E-value=0.24  Score=34.92  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         5 gKvalVTGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   39 (264)
T d1spxa_           5 EKVAIITGSSNGIGRA-----TAVLFAR-EGAKVTITGRHA   39 (264)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998886     6778899 999999999765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.22  Score=32.48  Aligned_cols=19  Identities=42%  Similarity=0.796  Sum_probs=14.0

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |+++ +.+|+||||+...+.
T Consensus         9 v~lv-G~~~vGKTsLi~r~~   27 (173)
T d2fn4a1           9 LVVV-GGGGVGKSALTIQFI   27 (173)
T ss_dssp             EEEE-ECTTSSHHHHHHHHH
T ss_pred             EEEE-CCCCcCHHHHHHHHH
Confidence            4444 589999999886654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.64  E-value=0.2  Score=32.66  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      |+|+++.|+     +-..||..|++ .|++|.+.+-|+
T Consensus         3 i~vigGaG~-----iG~alA~~la~-~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGN-----LGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSH-----HHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EEEEeCCcH-----HHHHHHHHHHH-CCCEEEEEECCH
Confidence            566644444     66679999999 999999999876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.64  E-value=3  Score=29.43  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      .|-|+++ +.+|+||||++-.|......
T Consensus         6 iRni~i~-gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           6 LRNIGIA-AHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEE-ECTTSCHHHHHHHHHHHHTS
T ss_pred             ceEEEEE-eCCCCCHHHHHHHHHHhcCc
Confidence            5567774 67899999999999766544

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.39  E-value=0.25  Score=34.92  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.+-+.
T Consensus         7 gK~alITGas~GIG~a-----ia~~la~-~G~~Vv~~~r~~   41 (261)
T d1geea_           7 GKVVVITGSSTGLGKS-----MAIRFAT-EKAKVVVNYRSK   41 (261)
T ss_dssp             TCEEEETTCSSHHHHH-----HHHHHHH-TTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEeCCc
Confidence            7899999999988875     5788899 999999999765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.16  E-value=0.32  Score=34.20  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=30.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+.
T Consensus         6 gK~alITGas~GIG~a-----ia~~la~-~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYA-----IVEELAG-LGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6788999 999999999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.06  E-value=0.27  Score=34.45  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|++.|-+.
T Consensus         6 gK~alVTGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~   40 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLA-----IATKFVE-EGAKVMITGRHS   40 (251)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999999998875     6788999 999999999765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.26  Score=34.74  Aligned_cols=26  Identities=38%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +..++++ +..|+||||+...+...+.
T Consensus        40 Ge~vaiv-G~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          40 GEVTALV-GPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHhcccC
Confidence            7788885 5779999999988876553

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=84.68  E-value=0.33  Score=31.08  Aligned_cols=15  Identities=27%  Similarity=0.359  Sum_probs=12.2

Q ss_pred             cCCCCCChhhHHHHH
Q 030973           38 SGKGGVGKSTTAVNL   52 (168)
Q Consensus        38 s~kgG~GKTt~a~~L   52 (168)
                      -+.+|+||||+...|
T Consensus         8 vG~~~~GKTsLi~~l   22 (165)
T d1ksha_           8 LGLDNAGKTTILKKF   22 (165)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            377889999998765

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.49  E-value=0.45  Score=32.07  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=18.2

Q ss_pred             CCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           40 KGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        40 kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      .-|.|||.++..++   .+ .++++|+|=
T Consensus        93 ~tG~GKT~~a~~~~---~~-~~~~~Liv~  117 (206)
T d2fz4a1          93 PTGSGKTHVAMAAI---NE-LSTPTLIVV  117 (206)
T ss_dssp             SSSTTHHHHHHHHH---HH-SCSCEEEEE
T ss_pred             CCCCCceehHHhHH---HH-hcCceeEEE
Confidence            46999998876554   34 677888774

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.47  E-value=0.44  Score=33.03  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG   73 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~~   73 (168)
                      +.|++.|+++.+|.|+.     +|..|++ .|.+|+++|-+...
T Consensus         6 ~gK~~lITGas~GIG~a-----ia~~la~-~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLA-----IAQRLAA-DGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESSSCC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCcch
Confidence            37899999999998875     6788999 99999999987644

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.19  E-value=0.48  Score=33.63  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEEe
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLD   68 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD   68 (168)
                      +.-+.=|+|||-++...+..... .|+.|+++=
T Consensus       108 LL~GdvGSGKT~Va~~a~~~~~~-~g~q~~~m~  139 (264)
T d1gm5a3         108 LLQGDVGSGKTVVAQLAILDNYE-AGFQTAFMV  139 (264)
T ss_dssp             EEECCSSSSHHHHHHHHHHHHHH-HTSCEEEEC
T ss_pred             eeeccccccccHHHHHHHHHHHh-cccceeEEe
Confidence            44578899999999999998888 899998873

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=83.98  E-value=0.25  Score=34.66  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=24.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +.+++++ +..|+||||+...++-.+.- ..-+|.+-+-|
T Consensus        31 Ge~~~ii-G~sGsGKSTLl~~i~Gl~~p-~sG~I~~~g~~   68 (240)
T d3dhwc1          31 GQIYGVI-GASGAGKSTLIRCVNLLERP-TEGSVLVDGQE   68 (240)
T ss_dssp             SCEEEEE-ESTTSSHHHHHHHHTTSSCC-SEEEEEETTEE
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHcCCccc-cCCceEEcCeE
Confidence            6788885 57799999998877765433 23345543333

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.87  E-value=0.33  Score=33.73  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=15.7

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      ..++.+.+||||||+.-.|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            34456899999999987774

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.77  E-value=0.43  Score=33.44  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        30 ~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      ..|++.|+++.+|.|+.     +|..|++ .|.+|++++-+.
T Consensus         4 ~gK~vlITGgs~GIG~~-----~A~~la~-~G~~vii~~r~~   39 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLD-----TSRELVK-RNLKNFVILDRV   39 (254)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHH-TCCSEEEEEESS
T ss_pred             CCCEEEEecCCCHHHHH-----HHHHHHH-CCCEEEEEECCc
Confidence            37899999999998875     7789999 999999987554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.73  E-value=0.66  Score=29.77  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=26.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      .|.|.+++ .|.+|++     +|..|++ .|++|.++|-+..
T Consensus         2 ~K~IliiG-aG~~G~~-----~a~~L~~-~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRP-----TLDVLTD-SGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEEC-CSTTHHH-----HHHHHHT-TTCEEEEEESCHH
T ss_pred             CCEEEEEC-CCHHHHH-----HHHHHHh-CCCEEEEEECChH
Confidence            35666764 4777766     4678888 9999999997763

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.67  E-value=0.41  Score=33.21  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|+.     +|..|++ .|.+|.+.+-+.
T Consensus         5 gK~alItGas~GIG~a-----ia~~l~~-~G~~V~~~~r~~   39 (241)
T d2a4ka1           5 GKTILVTGAASGIGRA-----ALDLFAR-EGASLVAVDREE   39 (241)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence            7899999988887764     6788999 999999998765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.64  E-value=0.28  Score=31.96  Aligned_cols=19  Identities=21%  Similarity=0.485  Sum_probs=13.7

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |+++ +.+|+|||++...+.
T Consensus         5 ivvv-G~~~vGKTsLi~~~~   23 (177)
T d1kmqa_           5 LVIV-GDGACGKTCLLIVNS   23 (177)
T ss_dssp             EEEE-ESTTSSHHHHHHHHH
T ss_pred             EEEE-CCCCcCHHHHHHHHH
Confidence            3443 699999999976543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.80  E-value=0.28  Score=33.32  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALAS   58 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~   58 (168)
                      +.+++++ +..|+||||+.-.++-.+.-
T Consensus        27 Gei~~l~-G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          27 GNVVNFH-GPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             TCCEEEE-CCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhccccc
Confidence            6777775 67899999999888766654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.40  E-value=0.45  Score=31.29  Aligned_cols=15  Identities=40%  Similarity=0.485  Sum_probs=13.7

Q ss_pred             cCCCCCChhhHHHHH
Q 030973           38 SGKGGVGKSTTAVNL   52 (168)
Q Consensus        38 s~kgG~GKTt~a~~L   52 (168)
                      -|.+|+||||+...+
T Consensus         8 lG~~~vGKTsll~r~   22 (200)
T d1zcba2           8 LGAGESGKSTFLKQM   22 (200)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            489999999999988

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=82.30  E-value=0.24  Score=36.06  Aligned_cols=21  Identities=43%  Similarity=0.540  Sum_probs=17.6

Q ss_pred             EecCCCCCChhhHHHHHHHHH
Q 030973           36 VASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +..+.+|+||||+|-.++..|
T Consensus        32 Ll~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          32 LVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEECCGGGCTTHHHHHHHHHS
T ss_pred             EEECCCCccHHHHHHHHHHhC
Confidence            335889999999999998766

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=82.19  E-value=0.44  Score=30.35  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             cCCCCeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        27 ~~~~~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +...++.|+|+++-|..|.+     +|..|.+ .|+.|.+.|-+..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~-----la~~L~~-~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGL-----FARYLRA-SGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHH-----HHHHHHT-TTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHH-----HHHHHHH-cCCCcEecccccc
Confidence            34457889998877776655     7888888 9999999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=1.3  Score=30.36  Aligned_cols=37  Identities=14%  Similarity=0.063  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.+|.|   +...+|..|++ .|.+|++.+-+.
T Consensus         5 gK~~lITGass~~G---IG~aiA~~l~~-~G~~V~i~~~~~   41 (258)
T d1qsga_           5 GKRILVTGVASKLS---IAYGIAQAMHR-EGAELAFTYQND   41 (258)
T ss_dssp             TCEEEECCCCSTTS---HHHHHHHHHHH-TTCEEEEEESST
T ss_pred             CCEEEEECCCCchh---HHHHHHHHHHH-cCCEEEEEeCCH
Confidence            68899987766333   44567889999 999999999874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.13  E-value=1.2  Score=31.00  Aligned_cols=37  Identities=5%  Similarity=-0.065  Sum_probs=27.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      .|++.|+++.|   .+=+-.++|..|++ .|.+|++.|-+.
T Consensus         5 gK~alITGaag---~~GIG~AiA~~la~-~Ga~V~i~~r~~   41 (274)
T d2pd4a1           5 GKKGLIVGVAN---NKSIAYGIAQSCFN-QGATLAFTYLNE   41 (274)
T ss_dssp             TCEEEEECCCS---TTSHHHHHHHHHHT-TTCEEEEEESST
T ss_pred             CCEEEEECCCC---CcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            67888886544   22244568889999 999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=82.08  E-value=0.45  Score=33.32  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEE
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL   66 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVll   66 (168)
                      +.+++++ +..|+||||+...++-.+.- ..-+|.+
T Consensus        29 Ge~~~li-G~sGaGKSTll~~i~gl~~p-~sG~I~~   62 (240)
T d1g2912          29 GEFMILL-GPSGCGKTTTLRMIAGLEEP-SRGQIYI   62 (240)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhcCCCC-CCCEEEE
Confidence            6788885 57799999999888765543 2234443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.96  E-value=1.3  Score=29.64  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=27.8

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCC---eEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL---KVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~---rVlliD~D   70 (168)
                      ++.+.++ +..|+|||++|..|+..+.. ...   .++.|..+
T Consensus        15 ~~~~l~~-G~~g~gk~~~a~~l~~~i~~-~~~~h~D~~~i~~~   55 (198)
T d2gnoa2          15 GISILIN-GEDLSYPREVSLELPEYVEK-FPPKASDVLEIDPE   55 (198)
T ss_dssp             SEEEEEE-CSSSSHHHHHHHHHHHHHHT-SCCCTTTEEEECCS
T ss_pred             CceEEEE-CCCCCCHHHHHHHHHHHHhc-cccCCCCEEEEeCC
Confidence            6777775 47899999999999988765 322   36666543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.84  E-value=0.41  Score=34.29  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.+++++ +..|+||||+...++-.+.
T Consensus        62 Ge~vaiv-G~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          62 GEMLAIT-GSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TCEEEEE-ESTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhCCCc
Confidence            7788886 5779999999887765543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.80  E-value=0.44  Score=33.12  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=26.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY   72 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~~   72 (168)
                      +.+++++ +..|+||||+...++-.+.- ..-.|++-+-|..
T Consensus        31 Ge~~~ii-G~sGsGKSTLl~~i~gl~~p-~sG~I~~~g~~i~   70 (230)
T d1l2ta_          31 GEFVSIM-GPSGSGKSTMLNIIGCLDKP-TEGEVYIDNIKTN   70 (230)
T ss_dssp             TCEEEEE-CSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECT
T ss_pred             CCEEEEE-CCCCCCcchhhHhccCCCCC-CcceeEECCEEcC
Confidence            6788885 57799999998777665543 2335665545543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=0.54  Score=32.69  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=26.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++. +..|+||||+...++-.+.- ..-.|.+-+-|.
T Consensus        26 Gei~~li-GpsGsGKSTLl~~i~Gl~~p-~sG~I~i~g~~i   64 (232)
T d2awna2          26 GEFVVFV-GPSGCGKSTLLRMIAGLETI-TSGDLFIGEKRM   64 (232)
T ss_dssp             TCEEEEE-CCTTSSHHHHHHHHHTSSCC-SEEEEEESSSCC
T ss_pred             CCEEEEE-CCCCChHHHHHHHHhcCCCC-CCCEEEECCEEC
Confidence            7788886 56789999998877765544 344665554444

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.68  E-value=0.42  Score=33.29  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +|+.|+++.+|.|+.     +|..|++ .|.+|++.|.+.
T Consensus         2 pV~lITGas~GIG~a-----~a~~la~-~Ga~V~i~~~~~   35 (244)
T d1edoa_           2 PVVVVTGASRGIGKA-----IALSLGK-AGCKVLVNYARS   35 (244)
T ss_dssp             CEEEETTCSSHHHHH-----HHHHHHH-TTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHH-----HHHHHHH-CCCEEEEEeCCC
Confidence            589999999988865     6788999 999999988753

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.50  E-value=0.48  Score=35.83  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=25.6

Q ss_pred             CeEEEEecC------CCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           31 KDVIAVASG------KGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        31 ~~vI~v~s~------kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      ||++.|++.      -||.|  +++.+||.+|++ +|++|-+|
T Consensus         1 M~i~~v~~e~~P~~~~GGl~--~vv~~La~~L~~-~Gh~V~Vi   40 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLA--DVVGALPIALEA-HGVRTRTL   40 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHH--HHHHHHHHHHHT-TTCEEEEE
T ss_pred             CEEEEEEEeeecccccCcHH--HHHHHHHHHHHH-cCCeEEEE
Confidence            455555432      36666  488899999999 99999998

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=81.32  E-value=0.47  Score=33.10  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV   71 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D~   71 (168)
                      +.++++.++ .|+||||+.-.++-.+.- ..-++.+-+-|.
T Consensus        28 Gei~glvG~-nGaGKSTLl~~l~G~~~p-~~G~i~i~G~~i   66 (238)
T d1vpla_          28 GEIFGLIGP-NGAGKTTTLRIISTLIKP-SSGIVTVFGKNV   66 (238)
T ss_dssp             TCEEEEECC-TTSSHHHHHHHHTTSSCC-SEEEEEETTEET
T ss_pred             CCEEEEECC-CCCCHHHHHHHHhcCCCC-CCCEEEECcEec
Confidence            789999765 799999998877765544 344566655444

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=81.26  E-value=0.62  Score=30.30  Aligned_cols=20  Identities=35%  Similarity=0.476  Sum_probs=15.4

Q ss_pred             EEEEecCCCCCChhhHHHHHH
Q 030973           33 VIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        33 vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      .|+++ +..|+||||+.-.|.
T Consensus        10 kV~ii-G~~~~GKSTLin~l~   29 (186)
T d1mkya2          10 KVAIV-GRPNVGKSTLFNAIL   29 (186)
T ss_dssp             EEEEE-CSTTSSHHHHHHHHH
T ss_pred             EEEEE-CCCCCCHHHHHHHHH
Confidence            45664 899999999986653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=0.44  Score=30.76  Aligned_cols=19  Identities=42%  Similarity=0.796  Sum_probs=14.3

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |+++ +.+|+||||+...+.
T Consensus         8 i~lv-G~~~vGKTsLi~r~~   26 (171)
T d2erya1           8 LVVV-GGGGVGKSALTIQFI   26 (171)
T ss_dssp             EEEE-ECTTSSHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHH
Confidence            4443 588999999987764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=81.14  E-value=0.56  Score=30.20  Aligned_cols=19  Identities=37%  Similarity=0.511  Sum_probs=14.9

Q ss_pred             EEEecCCCCCChhhHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA   53 (168)
                      |++ -+..|+||||+.-.|.
T Consensus         3 V~l-iG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           3 VLI-VGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEE-ECCTTSSHHHHHHHHH
T ss_pred             EEE-ECCCCCCHHHHHHHHh
Confidence            445 5789999999987764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=80.82  E-value=0.57  Score=34.33  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=19.8

Q ss_pred             EecCCCCCChhhHHHHHHHHHHHhCCCeEEEE
Q 030973           36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLL   67 (168)
Q Consensus        36 v~s~kgG~GKTt~a~~LA~~la~~~g~rVlli   67 (168)
                      .+-+--|+||||++..|+..+..   +.|+++
T Consensus         8 ~IEG~iGsGKTTl~~~La~~l~~---~~v~~~   36 (329)
T d1e2ka_           8 YIDGPHGMGKTTTTQLLVALGSR---DDIVYV   36 (329)
T ss_dssp             EECSCTTSSHHHHHHHHTC-------CCEEEE
T ss_pred             EEECCcCCCHHHHHHHHHHHhCC---CCeEEe
Confidence            34677899999999999987744   456665

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=80.59  E-value=0.16  Score=33.28  Aligned_cols=24  Identities=42%  Similarity=0.571  Sum_probs=20.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNLAVALA   57 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~LA~~la   57 (168)
                      +.++.+..|+||||+.-++.+.|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            566789999999999999998874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.53  E-value=0.36  Score=31.50  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=14.3

Q ss_pred             EEEecCCCCCChhhHHHHH
Q 030973           34 IAVASGKGGVGKSTTAVNL   52 (168)
Q Consensus        34 I~v~s~kgG~GKTt~a~~L   52 (168)
                      |+++ +.+|+||||+.-.|
T Consensus         4 Vaiv-G~~nvGKSTLin~L   21 (180)
T d1udxa2           4 VGLV-GYPNAGKSSLLAAM   21 (180)
T ss_dssp             EEEE-CCGGGCHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHH
Confidence            6665 78999999997555

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.50  E-value=0.46  Score=33.24  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             CeEEEEecCCCCCChhhHHHHHHHHHHHhCCCeEEEEeCC
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD   70 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA~~la~~~g~rVlliD~D   70 (168)
                      +|++.|+++.+|.|+-     +|..|++ .|.+|++.+-.
T Consensus         6 GK~alITGas~GIG~a-----ia~~la~-~G~~Vvi~~~~   39 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRG-----IAIELGR-RGASVVVNYGS   39 (259)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEcCC
Confidence            7899999999998874     6788999 99999987654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=80.40  E-value=0.68  Score=32.77  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=19.5

Q ss_pred             eEEEEecCCCCCChhhHHHHHHHHH
Q 030973           32 DVIAVASGKGGVGKSTTAVNLAVAL   56 (168)
Q Consensus        32 ~vI~v~s~kgG~GKTt~a~~LA~~l   56 (168)
                      +...++-+.|+.|||+++-.++..+
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4455556899999999998888755

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.34  E-value=0.4  Score=31.40  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=15.7

Q ss_pred             CeEEEEecCCCCCChhhHHHHHH
Q 030973           31 KDVIAVASGKGGVGKSTTAVNLA   53 (168)
Q Consensus        31 ~~vI~v~s~kgG~GKTt~a~~LA   53 (168)
                      .|+|.+  |-+|||||++...+.
T Consensus         3 ~Kiv~l--G~~~vGKTsll~r~~   23 (200)
T d2bcjq2           3 LKLLLL--GTGESGKSTFIKQMR   23 (200)
T ss_dssp             EEEEEE--ESTTSSHHHHHHHHH
T ss_pred             eEEEEE--CCCCCCHHHHHHHHh
Confidence            344444  789999999998773

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.22  E-value=0.99  Score=32.75  Aligned_cols=18  Identities=11%  Similarity=0.331  Sum_probs=12.0

Q ss_pred             HHhhcCCCCcEEEEeCCCC
Q 030973          132 SREVDWGNLDILVIDMPPG  150 (168)
Q Consensus       132 ~~~l~~~~yD~IiiD~p~~  150 (168)
                      +..-. ++||+||+|.+..
T Consensus       173 l~~~~-~~yDvII~D~~dp  190 (312)
T d2b2ca1         173 LKNHK-NEFDVIITDSSDP  190 (312)
T ss_dssp             HHHCT-TCEEEEEECCC--
T ss_pred             HHhCC-CCCCEEEEcCCCC
Confidence            33444 7899999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.08  E-value=0.59  Score=30.09  Aligned_cols=16  Identities=31%  Similarity=0.459  Sum_probs=13.0

Q ss_pred             cCCCCCChhhHHHHHH
Q 030973           38 SGKGGVGKSTTAVNLA   53 (168)
Q Consensus        38 s~kgG~GKTt~a~~LA   53 (168)
                      -+.+|+||||+...+.
T Consensus        11 vG~~~vGKTsLi~~l~   26 (169)
T d3raba_          11 IGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHH
Confidence            3679999999987664