Citrus Sinensis ID: 030983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHccEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNStlqtkfsqepepidweyyrkGIGSRLVDMYKQAYEsievpkyvdkvtpeYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Flexible Loop (DISEMBL)
msgagkkiadvafkagrtidwEGMAKMLVSDEARKEFATLRRAfdevnstlqtkfsqepepidweyyRKGIGSRLVDMYKQAYESievpkyvdkvTPEYKSKFDALLVELKEaegkslkeserleKEIAEVRELKEKISTMtaeeyfekhpelkkkfddeirndywgy
Low Complexity Region (SEG)
MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAegkslkeserlekeIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Disordered region (IsUnstruct)
*******IADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTL********EPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVEL**********************************************************
Disordered Region (DISOPRED)
*************KAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEG**LK**ERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYW**
Disordered Region (DISEMBL)
MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Disordered Region (DISPRO)
****GKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEYFEKHPELKKKFDDEIRNDYWGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9FT52	168	ATP synthase subunit d, m	yes	no	1.0	1.0	0.839	2e-79
O75947	161	ATP synthase subunit d, m	yes	no	0.869	0.906	0.289	1e-05
P31399	161	ATP synthase subunit d, m	no	no	0.505	0.527	0.297	7e-05
Q24251	178	ATP synthase subunit d, m	yes	no	0.880	0.831	0.25	8e-05
P13620	161	ATP synthase subunit d, m	yes	no	0.910	0.950	0.246	8e-05
Q9DCX2	161	ATP synthase subunit d, m	yes	no	0.863	0.900	0.247	0.0005

>sp|Q9FT52|ATP5H_ARATH ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3

 Score =  294 bits (753), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 159/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Arabidopsis thaliana (taxid: 3702)

>sp|O75947|ATP5H_HUMAN ATP synthase subunit d, mitochondrial OS=Homo sapiens GN=ATP5H PE=1 SV=3

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 27/173 (15%)

Query: 4   AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
           AG+K+A       +TIDW   A+++  ++  K  A+  ++++E  ++      + P  ID
Sbjct: 2   AGRKLA------LKTIDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAID 53

Query: 64  WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKE-----AEGKS 117
           W YY+  +  + LVD +++ + +++VP   DK    Y ++ DA   E KE     AE  S
Sbjct: 54  WAYYKANVAKAGLVDDFEKKFNALKVPVPEDK----YTAQVDA---EEKEDVKSCAEWVS 106

Query: 118 LKESERLEKEIAEVRELKEKIS--TMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           L ++  +E E  E+ ++K  I    MT E+  E  PE K    D+ +  YW +
Sbjct: 107 LSKARIVEYE-KEMEKMKNLIPFDQMTIEDLNEAFPETKL---DKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|P31399|ATP5H_RAT ATP synthase subunit d, mitochondrial OS=Rattus norvegicus GN=Atp5h PE=1 SV=3

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 4  AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
          AG+K+A       +TIDW    +++  ++  K      ++++E   T     S++P  ID
Sbjct: 2  AGRKLA------LKTIDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAID 53

Query: 64 WEYYRKGIGSR-LVDMYKQAYESIEVPKYVDKVT 96
          W YYR  +    LVD +K  Y ++++P   DK T
Sbjct: 54 WAYYRANVDKPGLVDDFKNKYNALKIPVPEDKYT 87

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rattus norvegicus (taxid: 10116)

>sp|Q24251|ATP5H_DROME ATP synthase subunit d, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-d PE=2 SV=2

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 15  AGRTIDWEGMAKMLVSDEARKEFATLRRAFD-EVNSTLQTKFSQEPEPIDWEYYRKGIG- 72
           A  +I+W  +A+ + +++ +  F   +   D  V + L     + P  IDW  Y+K +  
Sbjct: 7   AQSSINWSALAERVPANQ-KSSFGAFKTKSDIYVRAVLAN--PECPPQIDWANYKKLVPV 63

Query: 73  SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVR 132
           + LVD +++ YE+++VP   DKV+ +  ++  A   E+   +  S +  +  +KEIA ++
Sbjct: 64  AGLVDSFQKQYEALKVPYPQDKVSSQVDAEIKASQSEIDAYKKASEQRIQNYQKEIAHLK 123

Query: 133 ELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
            L      MT E+Y +  P+     D   +  +W +
Sbjct: 124 SLL-PYDQMTMEDYRDAFPD--SALDPLNKPTFWPH 156

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Drosophila melanogaster (taxid: 7227)

>sp|P13620|ATP5H_BOVIN ATP synthase subunit d, mitochondrial OS=Bos taurus GN=ATP5H PE=1 SV=2

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 4   AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
           AG+K+A       +TIDW    +++  ++  K  A   ++++E  ++      ++P  ID
Sbjct: 2   AGRKLA------LKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAID 53

Query: 64  WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESE 122
           W YY+  +  + LVD +++ + +++VP   DK T +  ++    +    E   +S    +
Sbjct: 54  WAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQ 113

Query: 123 RLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
             EKE+ ++R +      MT E+  E  PE K    D+ +  YW +
Sbjct: 114 EYEKELEKMRNII-PFDQMTIEDLNEVFPETKL---DKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

>sp|Q9DCX2|ATP5H_MOUSE ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1 SV=3

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 29/174 (16%)

Query: 4   AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
           AG+K+A       +TIDW    +++  ++  K      ++++E         S++P  ID
Sbjct: 2   AGRKLA------LKTIDWVSFVEVMPQNQ--KAIGNALKSWNETFHARLASLSEKPPAID 53

Query: 64  WEYYRKGIGSR-LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE-- 120
           W YYR  +    LVD +++ Y ++++P       PE   K+ AL+ + ++ + KS  E  
Sbjct: 54  WAYYRANVAKPGLVDDFEKKYNALKIP------VPE--DKYTALVDQEEKEDVKSCAEFV 105

Query: 121 ------SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
                  +  EK++ ++R +      MT ++  E  PE K    D+ +  YW +
Sbjct: 106 SGSQLRIQEYEKQLEKMRNII-PFDQMTIDDLNEIFPETKL---DKKKYPYWPH 155

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
225449132	168	PREDICTED: ATP synthase subunit d, mitoc	1.0	1.0	0.892	4e-82
224100839	168	predicted protein [Populus trichocarpa]	1.0	1.0	0.880	6e-81
255577651	168	ATP synthase D chain, mitochondrial, put	1.0	1.0	0.863	8e-80
48209968	168	ATP synthase D chain, mitochondrial, put	1.0	1.0	0.857	2e-79
307136395	168	ATP synthase d chain [Cucumis melo subsp	1.0	1.0	0.845	4e-79
449449330	168	PREDICTED: ATP synthase subunit d, mitoc	1.0	1.0	0.833	6e-78
15231176	168	ATP synthase subunit d [Arabidopsis thal	1.0	1.0	0.839	8e-78
297816502	168	hypothetical protein ARALYDRAFT_485596 [	1.0	1.0	0.833	1e-77
388495286	168	unknown [Lotus japonicus]	1.0	1.0	0.833	1e-77
351734514	168	uncharacterized protein LOC100306184 [Gl	1.0	1.0	0.827	1e-77

>gi|225449132|ref|XP_002277452.1| PREDICTED: ATP synthase subunit d, mitochondrial [Vitis vinifera] gi|147818815|emb|CAN60726.1| hypothetical protein VITISV_029118 [Vitis vinifera]

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/168 (89%), Positives = 160/168 (95%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG GKKI DVAFKA RTIDW+GMAK++V++EARKEFATLRRAFDEVNSTLQTKFSQEPE
Sbjct: 1   MSGTGKKIVDVAFKASRTIDWDGMAKLIVTEEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDWEYYR+GIGSRLVDMYK+AYESI VPKYVD VTP+YK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRRGIGSRLVDMYKEAYESISVPKYVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIAEV+ELK+KISTMTA EYFEKHPELKKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKKKISTMTANEYFEKHPELKKKFDDEIRNDYWGY 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100839|ref|XP_002312034.1| predicted protein [Populus trichocarpa] gi|118488985|gb|ABK96300.1| unknown [Populus trichocarpa x Populus deltoides] gi|222851854|gb|EEE89401.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKA RTIDW+GMAK+LVSDEARKEFATLRRAF+EVNS L+TKFSQEPE
Sbjct: 1   MSGPSKKVVDVAFKASRTIDWDGMAKLLVSDEARKEFATLRRAFNEVNSQLETKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDWEYYR+GIGSRLVDMYKQAYESIE+PK+ DKVTPEYK KFD LLVELKEAE +SLKE
Sbjct: 61  PIDWEYYRRGIGSRLVDMYKQAYESIEIPKFQDKVTPEYKPKFDQLLVELKEAEQQSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIAEV+ELK KISTMTAEEYFEKHPELKKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQELKTKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577651|ref|XP_002529702.1| ATP synthase D chain, mitochondrial, putative [Ricinus communis] gi|223530804|gb|EEF32668.1| ATP synthase D chain, mitochondrial, putative [Ricinus communis]

 Score =  301 bits (770), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 145/168 (86%), Positives = 158/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKA + IDWEGMAK+LVSDEARKEFATLRR FDEVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKKIDWEGMAKLLVSDEARKEFATLRRTFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDWEYYRKGIGSRLVDMYK+AY+S+E+PK+VD VTP+YK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSVEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIA+V+ELK+K+STMTAEEYF KHPELKKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48209968|gb|AAT40531.1| ATP synthase D chain, mitochondrial, putative [Solanum demissum]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/168 (85%), Positives = 158/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KKIADV FKAGRTIDWEGMAK+LV+DEARKEF+ LRRAFD+VNS LQTKFSQEPE
Sbjct: 1   MSGTVKKIADVTFKAGRTIDWEGMAKLLVTDEARKEFSNLRRAFDDVNSQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PI+WEYYRKGIGSRLVDMYK+AYESIE+PK+ D VTP+YK KFDALLVELKEAE +SLKE
Sbjct: 61  PINWEYYRKGIGSRLVDMYKEAYESIEIPKFEDTVTPQYKPKFDALLVELKEAEKQSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKE+AEV+ELK+K+STMTAEEYF KHPELKKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVAEVQELKKKLSTMTAEEYFAKHPELKKKFDDEIRNDYWGY 168

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136395|gb|ADN34205.1| ATP synthase d chain [Cucumis melo subsp. melo]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/168 (84%), Positives = 158/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKA + IDW+GMAK+LVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDWEYYRKGIGSRLVDMYK+AY+SIE+PK+VD VTP+YK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIAEVRE+K+KI TMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449330|ref|XP_004142418.1| PREDICTED: ATP synthase subunit d, mitochondrial-like [Cucumis sativus] gi|449487159|ref|XP_004157514.1| PREDICTED: ATP synthase subunit d, mitochondrial-like [Cucumis sativus]

 Score =  295 bits (754), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 157/168 (93%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKA + IDW+GMAK+LVSDEARKEF++LRRAF+EVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDWEYYRKGIGSRLVDMYK+AY+ IE+PK+VD VTP+YK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIAEV+E+K+KI TMTA+EYFEKHPEL+KKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231176|ref|NP_190798.1| ATP synthase subunit d [Arabidopsis thaliana] gi|25089786|sp|Q9FT52.3|ATP5H_ARATH RecName: Full=ATP synthase subunit d, mitochondrial; Short=ATPase subunit d gi|10045563|emb|CAC07921.1| putative protein [Arabidopsis thaliana] gi|15215604|gb|AAK91347.1| AT3g52300/T25B15_70 [Arabidopsis thaliana] gi|20334872|gb|AAM16192.1| AT3g52300/T25B15_70 [Arabidopsis thaliana] gi|21555349|gb|AAM63838.1| mitochondrial F0 ATP synthase D chain [Arabidopsis thaliana] gi|332645407|gb|AEE78928.1| ATP synthase subunit d [Arabidopsis thaliana]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 159/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEAE KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816502|ref|XP_002876134.1| hypothetical protein ARALYDRAFT_485596 [Arabidopsis lyrata subsp. lyrata] gi|297321972|gb|EFH52393.1| hypothetical protein ARALYDRAFT_485596 [Arabidopsis lyrata subsp. lyrata]

 Score =  294 bits (752), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 159/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEAE KSL+E
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEAKSLQE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495286|gb|AFK35709.1| unknown [Lotus japonicus]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 158/168 (94%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSGAGKK+ DVAFKAG+ IDWEGMAK+LVSDEAR+EF+ LRRAFD+VNS LQTKFSQEPE
Sbjct: 1   MSGAGKKVVDVAFKAGKNIDWEGMAKLLVSDEARREFSNLRRAFDDVNSQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDW+YYRKGIGSRLVDMYK+ YESIEVPK+VD VTP+YK+KFD+LL+ELKEAE KS KE
Sbjct: 61  PIDWDYYRKGIGSRLVDMYKEHYESIEVPKFVDTVTPKYKTKFDSLLIELKEAEEKSWKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIA+V+ELK+K+STMTA+EYF KHPELKKKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQELKKKLSTMTADEYFAKHPELKKKFDDEIRNDNWGY 168

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734514|ref|NP_001235072.1| uncharacterized protein LOC100306184 [Glycine max] gi|255627799|gb|ACU14244.1| unknown [Glycine max]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 157/168 (93%)

Query: 1   MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
           MSG  KK++DVAFK GR IDW+GMAK+LVSDEAR+EF+ LRRAFDEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVSDVAFKVGRNIDWDGMAKLLVSDEARREFSNLRRAFDEVNSQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKE 120
           PIDW+YYRKGIG+RLVDMYK+ YESIE+PK+VD VTP+YK KFDALL+ELKEAE KSLKE
Sbjct: 61  PIDWDYYRKGIGTRLVDMYKEHYESIEIPKFVDTVTPQYKPKFDALLIELKEAEEKSLKE 120

Query: 121 SERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
           SERLEKEIAEV+ELK+K+STMTA+EYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIAEVQELKKKLSTMTADEYFEKHPELRKKFDDEIRNDNWGY 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2100509	168	ATPQ ""ATP synthase D chain, m	1.0	1.0	0.761	1.5e-67
RGD|1559626	161	Atp5hl1 "ATP synthase, H+ tran	0.833	0.869	0.264	4.7e-09
RGD|620083	161	Atp5h "ATP synthase, H+ transp	0.821	0.857	0.267	2e-08
UNIPROTKB|P31399	161	Atp5h "ATP synthase subunit d,	0.821	0.857	0.267	2e-08
UNIPROTKB|J9P114	161	LOC100684996 "Uncharacterized	0.857	0.894	0.232	3.3e-08
UNIPROTKB|O75947	161	ATP5H "ATP synthase subunit d,	0.839	0.875	0.253	3.3e-08
UNIPROTKB|E1C658	161	ATP5H "Uncharacterized protein	0.833	0.869	0.257	4.2e-08
ZFIN|ZDB-GENE-040426-1658	161	atp5h "ATP synthase, H+ transp	0.845	0.881	0.260	1.4e-07
UNIPROTKB|E2RHH8	161	LOC478252 "Uncharacterized pro	0.845	0.881	0.228	1.8e-07
UNIPROTKB|J9NUR6	161	J9NUR6 "Uncharacterized protei	0.845	0.881	0.228	1.8e-07

TAIR|locus:2100509 ATPQ ""ATP synthase D chain, mitochondrial"" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 128/168 (76%), Positives = 146/168 (86%)

Query:     1 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60
             MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPE
Sbjct:     1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query:    61 PIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXX 120
             PIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA       
Sbjct:    61 PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query:   121 XXXXXXXIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
                    IA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:   121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

RGD|1559626 Atp5hl1 "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 42/159 (26%), Positives = 70/159 (44%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K      +++++   T     S++P  IDW YYR  +G   L
Sbjct:     9 KTIDWVSFVEIMPQNQ--KAIGNALKSWNKTFHTRLASMSEKPPAIDWAYYRTNVGKAGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +++ Y  +++P   DK    Y +  DA   E KE               + E  +  
Sbjct:    67 VDDFEKKYNVLKIPVPEDK----YTALVDA---EEKEEVKTCAQFVSGSQARVQEYEKQL 119

Query:   136 EKISTM------TAEEYFEKHPELKKKFDDEIRNDYWGY 168
             EKI +M      T ++  E  PE K    DE +  YW +
Sbjct:   120 EKIKSMIPFDQMTIDDLNEIFPETKL---DEKKYPYWSH 155

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

RGD|620083 Atp5h "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 42/157 (26%), Positives = 67/157 (42%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K      ++++E   T     S++P  IDW YYR  +    L
Sbjct:     9 KTIDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +K  Y ++++P   DK    Y +  DA   E KE               + E  +  
Sbjct:    67 VDDFKNKYNALKIPVPEDK----YTALVDA---EEKEDVKNCAQFVTGSQARVREYEKQL 119

Query:   136 EKISTM------TAEEYFEKHPELKKKFDDEIRNDYW 166
             EKI  M      T ++  E  PE K    D+ +  YW
Sbjct:   120 EKIKNMIPFDQMTIDDLNEVFPETKL---DKRKYPYW 153

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISO;TAS

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA;TAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|P31399 Atp5h "ATP synthase subunit d, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 42/157 (26%), Positives = 67/157 (42%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K      ++++E   T     S++P  IDW YYR  +    L
Sbjct:     9 KTIDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +K  Y ++++P   DK    Y +  DA   E KE               + E  +  
Sbjct:    67 VDDFKNKYNALKIPVPEDK----YTALVDA---EEKEDVKNCAQFVTGSQARVREYEKQL 119

Query:   136 EKISTM------TAEEYFEKHPELKKKFDDEIRNDYW 166
             EKI  M      T ++  E  PE K    D+ +  YW
Sbjct:   120 EKIKNMIPFDQMTIDDLNEVFPETKL---DKRKYPYW 153

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|J9P114 LOC100684996 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 36/155 (23%), Positives = 71/155 (45%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K FA    +++E+ ++      ++P  IDW YY+  +    L
Sbjct:     9 KTIDWVAFGEIIPQNQ--KAFANSLESWNEMLTSRLATLPEKPPAIDWAYYKANVAKAGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +++ + +++VP   DK T +  ++      ++K                  E+ ++K
Sbjct:    67 VDDFEKKFNALKVPVPEDKYTVQVDAEEKE---DVKSCAEFLSLSKTRIEEYEKELEKMK 123

Query:   136 EKI--STMTAEEYFEKHPELKKKFDDEIRNDYWGY 168
               I    MT E+  E  PE K    D+ +  YW +
Sbjct:   124 NIIPFDQMTIEDLNEVFPETKL---DKKKYPYWAH 155

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|O75947 ATP5H "ATP synthase subunit d, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 39/154 (25%), Positives = 71/154 (46%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW   A+++  ++  K  A+  ++++E  ++      + P  IDW YY+  +    L
Sbjct:     9 KTIDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVE-LKEAXXXXXXXXXXXXXXIAEVREL 134
             VD +++ + +++VP   DK    Y ++ DA   E +K                  E+ ++
Sbjct:    67 VDDFEKKFNALKVPVPEDK----YTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKM 122

Query:   135 KEKI--STMTAEEYFEKHPELKKKFDDEIRNDYW 166
             K  I    MT E+  E  PE K    D+ +  YW
Sbjct:   123 KNLIPFDQMTIEDLNEAFPETKL---DKKKYPYW 153

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|E1C658 ATP5H "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 41/159 (25%), Positives = 75/159 (47%)

Query:    15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR 74
             A + IDW   A+ + +++ R  F  L+   D +++ L     ++P  IDW YY+  +   
Sbjct:     7 AVKAIDWAAFAERVPANQ-RAMFNALKTRSDALSARLAA-LPEKPPAIDWTYYKTAVAKA 64

Query:    75 -LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRE 133
              +VD +++ + +++VP+ VD  T    +K DA   + +EA              IAE  +
Sbjct:    65 GMVDEFQKKFSALKVPEPVDTQT----AKIDA---QEQEAAKGIVEYVKASKARIAEYEQ 117

Query:   134 LKEKISTM------TAEEYFEKHPELKKKFDDEIRNDYW 166
               +K+ +M      T E+  E  PE +   D E +  +W
Sbjct:   118 QLQKLRSMIPFEQMTFEDLHEAFPETR--LDRE-KYPFW 153

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1658 atp5h "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 42/161 (26%), Positives = 72/161 (44%)

Query:    15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR 74
             A + IDW   A+ +  ++ R  F +L+   D +++ L +   ++P  I+W +YR  +   
Sbjct:     7 AVKAIDWLAFAERVPPNQ-RAMFNSLKTRSDAISAKLAS-LPEKPSTINWSHYRAVVAKA 64

Query:    75 -LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRE 133
              +VD +++ +  + VP+ VD  T    +K DA   + +EA              IAE  +
Sbjct:    65 GMVDEFEKKFAGLTVPEPVDTQT----AKIDA---QEQEANKSAAAYLEASKARIAEYEK 117

Query:   134 LKEKISTM------TAEEYFEKHPELKKKFDDEIRNDYWGY 168
               EK   M      T E+     PE K    D+ +  YW Y
Sbjct:   118 ELEKFRNMIPFDQMTIEDLNNTFPETKL---DKQKYPYWPY 155

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|E2RHH8 LOC478252 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 35/153 (22%), Positives = 70/153 (45%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K  A   ++++E+ ++      ++P  IDW YY+  +    L
Sbjct:     9 KTIDWVAFGEIIPRNQ--KAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKANVAKAGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +++ + +++VP   DK T +  ++      ++K                  E+ ++K
Sbjct:    67 VDDFEKKFNALKVPVPEDKYTVQVDAEEKE---DVKSCAEFLSLSKARIEEYEKELEKMK 123

Query:   136 EKI--STMTAEEYFEKHPELKKKFDDEIRNDYW 166
               I    MT E+  E  PE K    D+ +  YW
Sbjct:   124 NIIPFDQMTIEDLNEVFPETKL---DKKKYPYW 153

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|J9NUR6 J9NUR6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 35/153 (22%), Positives = 70/153 (45%)

Query:    17 RTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR-L 75
             +TIDW    +++  ++  K  A   ++++E+ ++      ++P  IDW YY+  +    L
Sbjct:     9 KTIDWVAFGEIIPRNQ--KAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKANVAKAGL 66

Query:    76 VDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELK 135
             VD +++ + +++VP   DK T +  ++      ++K                  E+ ++K
Sbjct:    67 VDDFEKKFNALKVPVPEDKYTVQVDAEEKE---DVKSCAVFLSLSKARIEEYEKELEKMK 123

Query:   136 EKI--STMTAEEYFEKHPELKKKFDDEIRNDYW 166
               I    MT E+  E  PE K    D+ +  YW
Sbjct:   124 NIIPFDQMTIEDLNEVFPETKL---DKKKYPYW 153

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FT52	ATP5H_ARATH	No assigned EC number	0.8392	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018240001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shotgun sequence); (168 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)				•		•			0.908
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)						•			0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)						•			0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)						•			0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00019017001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (206 aa)				•	•	•			0.495

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam05873	160	pfam05873, Mt_ATP-synt_D, ATP synthase D chain, mi	2e-10

>gnl|CDD|114591 pfam05873, Mt_ATP-synt_D, ATP synthase D chain, mitochondrial (ATP5H)

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 16/155 (10%)

Query: 4   AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE--- 60
           A +++A        +I+W  +A+ +  ++  +       AF   + T Q++ +Q PE   
Sbjct: 1   AARRVAL------SSINWSALAERVPPNQKAE-----FNAFKSKSETYQSRVAQLPEKPP 49

Query: 61  PIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLK 119
            IDW YY+K +  + LVD +++ YE+++VP   DK T +  ++    +  + E + KS  
Sbjct: 50  AIDWAYYKKNVPKAGLVDSFEKKYEALKVPYPEDKYTAQVDAEEKEDVKRIAEYKTKSAD 109

Query: 120 ESERLEKEIAEVRELKEKISTMTAEEYFEKHPELK 154
             +  EKE+ + + +      MT E++ E  PE  
Sbjct: 110 RIQEYEKELEKWKNMI-PYDQMTMEDFNEAFPETA 143

This family consists of several ATP synthase D chain, mitochondrial (ATP5H) proteins. Subunit d has no extensive hydrophobic sequences, and is not apparently related to any subunit described in the simpler ATP synthases in bacteria and chloroplasts. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG3366	172	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
PF05873	161	Mt_ATP-synt_D: ATP synthase D chain, mitochondrial	100.0
PRK04778	569	septation ring formation regulator EzrA; Provision	80.32

>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]

Probab=100.00  E-value=5.5e-50  Score=316.69  Aligned_cols=151  Identities=36%  Similarity=0.585  Sum_probs=146.5

Q ss_pred             HhhhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccc-ccc
Q 030983           13 FKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIE-VPK   90 (168)
Q Consensus        13 ~~a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~k-vp~   90 (168)
                      +.|.++|||++++++ ||++|+++|.+||++|+++.++|+. ||++||+|||+|||++|+ .|+||.||++|++|+ +|+
T Consensus         6 ~aa~~~IdWa~lae~-v~~~~~~~~s~fk~~~~~~~~~l~~-lpe~~p~IDwa~Yrk~va~a~~VD~~ek~y~slk~v~~   83 (172)
T KOG3366|consen    6 SAASSSIDWAKLAER-VPPNQAAEFSSFKSRNDEAVSRLLT-LPEQPPTIDWAYYRKVVANAGLVDKYEKKYDSLKPVPV   83 (172)
T ss_pred             HHHhccccHHHHHHH-cCHHHHHHHHHHHHhhHHHHHHHHh-cccCCCccCHHHHHHHhhhhHHHHHHHHHHHhccccCC
Confidence            334667999999999 9999999999999999999999998 699999999999999999 999999999999999 999


Q ss_pred             ccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCCCC
Q 030983           91 YVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWG  167 (168)
Q Consensus        91 ~~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~Wg  167 (168)
                      |.|+|+++|+++++.+++.|+++++.|.+||++|+++|++|+++| ||+|||||||+++|| |...|++|+++|.|+
T Consensus        84 ~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~~~~-P~demT~ed~~ea~P-~~~k~d~~~k~g~W~  158 (172)
T KOG3366|consen   84 DEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVKSAR-PFDEMTMEDLNEAFP-IEKKVDDMVKPGKWP  158 (172)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccccHHHHHHhCc-hhhcccccccCCCCC
Confidence            999999999999999999999999999999999999999999999 999999999999999 999999999999993

>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=3.5e-50  Score=318.24  Aligned_cols=142  Identities=30%  Similarity=0.540  Sum_probs=93.1

Q ss_pred             hhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC--hHHHHHHHHHhhcccccccc
Q 030983           15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG--SRLVDMYKQAYESIEVPKYV   92 (168)
Q Consensus        15 a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~--~~lVD~feK~y~s~kvp~~~   92 (168)
                      |+++|||++|+++ ||++|+++|++||+|||+++++|.. ||++||+|||+|||++|+  ++|||+|||+|++|+||||+
T Consensus         6 a~~aidWa~l~~~-vp~~~~~~~~afk~r~d~~~~~v~~-~pe~pp~IDwa~Yk~~l~~~~~lVD~feK~y~s~kip~p~   83 (161)
T PF05873_consen    6 AASAIDWAKLAER-VPPEQKAQFQAFKKRSDEYKRRVSK-LPEQPPKIDWAHYKSVLKENPGLVDEFEKQYESFKIPYPV   83 (161)
T ss_dssp             ------HHHHHTT-S-GGGHHHHHHHHHHHHHHHHHHHH-S-SS-----HHHHHHC-S-STTHHHHHHHHHCC-------
T ss_pred             HHHHccHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHh-CcCCCCCCCHHHHHHHhhhhHHHHHHHHHHHhccCCCCCh
Confidence            3789999999999 8999999999999999999999997 799999999999999999  99999999999999999999


Q ss_pred             CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHH
Q 030983           93 DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDD  159 (168)
Q Consensus        93 d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~  159 (168)
                      |++++.|+++++++++++++++++|+.||++|+++|++|++++ ||+|||||||+++||+++.+++.
T Consensus        84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~-P~e~mT~dd~~~a~Pe~~~d~~k  149 (161)
T PF05873_consen   84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESAR-PFEQMTVDDYAAAFPEIALDINK  149 (161)
T ss_dssp             -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHhCCHHHHHHhCcccccccCC
Confidence            9999999999999999999999999999999999999999999 99999999999999999998653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=80.32  E-value=8.4  Score=36.07  Aligned_cols=122  Identities=14%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccccccccCccch--hhhhHHHH
Q 030983           29 VSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTP--EYKSKFDA  105 (168)
Q Consensus        29 vp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~~d~~~~--~i~a~e~~  105 (168)
                      .-..++..+..+|.+|.+++..++..        .|.|--+.=. ..-.+.+|..|..|.---..+.+..  .+-..-.+
T Consensus       134 ~e~~nr~~v~~l~~~y~~~rk~ll~~--------~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~  205 (569)
T PRK04778        134 SEEKNREEVEQLKDLYRELRKSLLAN--------RFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEE  205 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--------CccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            34678899999999999999999876        3433333333 5667777777777763333333322  12222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccccCCHHHhHHhCCcchHHHH
Q 030983          106 LLVELKEAEGKSLKESERLEKEI-AEVRELKEKISTMTAEEYFEKHPELKKKFD  158 (168)
Q Consensus       106 ~~~~a~~~~~~s~~rI~~l~~eL-~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~  158 (168)
                      ...........+=.-+.+++.++ ..|..+..-+.+|+.+.|.-.+=++..+|.
T Consensus       206 ~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~  259 (569)
T PRK04778        206 ELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQ  259 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHH
Confidence            33444444444445556666666 666666666777776666433333444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2wss_U	118	The Structure Of The Membrane Extrinsic Region Of B		2e-04
2cly_B	160	Subcomplex Of The Stator Of Bovine Mitochondrial At		2e-04
4b2q_U	120	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		3e-04

>pdb|2WSS|U Chain U, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 118

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 4  AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
          AG+K+A       +TIDW    +++  ++  K  A   ++++E  ++      ++P  ID
Sbjct: 1  AGRKLA------LKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAID 52
Query: 64 WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVTPE 98
          W YY+  +  + LVD +++ + +++VP   DK T +
Sbjct: 53 WAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYTAQ 88

>pdb|2CLY|B Chain B, Subcomplex Of The Stator Of Bovine Mitochondrial Atp Synthase Length = 160

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 4  AGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPID 63
          AG+K+A       +TIDW    +++  ++  K  A   ++++E  ++      ++P  ID
Sbjct: 1  AGRKLA------LKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAID 52
Query: 64 WEYYRKGIG-SRLVDMYKQAYESIEVPKYVDKVT 96
          W YY+  +  + LVD +++ + +++VP   DK T
Sbjct: 53 WAYYKANVAKAGLVDDFEKKFNALKVPIPEDKYT 86

>pdb|4B2Q|U Chain U, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 120

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 15 AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-S 73
          A +TIDW    +++  ++  K  A   ++++E  ++      ++P  IDW YY+  +  +
Sbjct: 3  ALKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKA 60
Query: 74 RLVDMYKQAYESIEVPKYVDKVT 96
           LVD +++ + +++VP   DK T
Sbjct: 61 GLVDDFEKKFNALKVPIPEDKYT 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2cly_B	160	ATP synthase D chain, mitochondrial; mitochondrion	1e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U* Length = 160

 Score =  108 bits (270), Expect = 1e-30
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 7/153 (4%)

Query: 15  AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSR 74
           A +TIDW    + ++    +    +L+   + + S L     ++P  IDW YY+  +   
Sbjct: 6   ALKTIDWVAFGE-IIPRNQKAVANSLKSWNETLTSRLA-TLPEKPPAIDWAYYKANVAKA 63

Query: 75  -LVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRE 133
            LVD +++ + +++VP   DK T +  ++    +    E   +S    +  EKE+ ++R 
Sbjct: 64  GLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN 123

Query: 134 LKEKISTMTAEEYFEKHPELKKKFDDEIRNDYW 166
           +      MT E+  E  PE K    D+ +  YW
Sbjct: 124 II-PFDQMTIEDLNEVFPETKL---DKKKYPYW 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 40/200 (20%)

Query: 1   MSGAGKKI--ADVAFKAGRT------IDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQ 52
           + G+GK     DV             I W  +      +   +    L    D   ++  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 53  TKFSQEPEPIDWEYYRKGIGSRLVD--MYKQAY------ESIEVPKYVD---K--VTPEY 99
              S     I           RL+    Y+         ++ +     +   K  +T  +
Sbjct: 218 DHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 100 KSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTA----EEYFEKHP---- 151
           K   D L              S  L  +  EV+ L  K           E    +P    
Sbjct: 275 KQVTDFLSAA-TTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 152 ---ELKKKFDDEIRNDYWGY 168
              E  +  D     D W +
Sbjct: 332 IIAESIR--DGLATWDNWKH 349

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 54/211 (25%)

Query: 6   KKIADVAFKAGRT-IDWEGMAKMLVSDEARKEFA--------TLRRAFDEVNSTLQTKF- 55
           K++ D    A  T I  +  +  L  DE +             L R     N    +   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 56  -SQEPEPIDWEYYRKGIGSRLVDM------------YKQAYESIEV-PKYVDKVTPE--- 98
            S       W+ ++     +L  +            Y++ ++ + V P     +      
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLS 393

Query: 99  ---YKSKFDALLVELKEAEGKSL--KESERLEKEIAEV-RELKEKISTMTA------EEY 146
              +      ++V + +    SL  K+ +     I  +  ELK K+    A      + Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 147 FEKHPELKKKFDDE----IRND-YW----GY 168
                 + K FD +       D Y+    G+
Sbjct: 454 -----NIPKTFDSDDLIPPYLDQYFYSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
2cly_B	160	ATP synthase D chain, mitochondrial; mitochondrion	100.0

>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*

Probab=100.00  E-value=3.5e-53  Score=333.95  Aligned_cols=148  Identities=26%  Similarity=0.478  Sum_probs=115.8

Q ss_pred             hhhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhcccccccc
Q 030983           14 KAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKYV   92 (168)
Q Consensus        14 ~a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~~   92 (168)
                      +|+++|||++|+++ ||++|+++|++||++|++++++|.. ||++||+|||+|||++|+ ++|||+|||+|++|+||||+
T Consensus         5 ~a~~~idW~~l~~~-v~~~~~a~~~afK~~~d~~~~~v~~-lpe~pp~IDwa~Yk~~l~~~~lVD~fek~y~s~kvp~~~   82 (160)
T 2cly_B            5 LALKTIDWVAFGEI-IPRNQKAVANSLKSWNETLTSRLAT-LPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIPE   82 (160)
T ss_dssp             CCCCCCCHHHHHTT-SCGGGHHHHHHHHHHHHHHHHHHHH-SCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCCCC
T ss_pred             HHHhhccHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHh-cccCCCCCCHHHHHHhCCchHHHHHHHHHHhccCCCCCc
Confidence            45789999999999 9999999999999999999999998 799999999999999999 99999999999999999999


Q ss_pred             CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHhHHhCCcchHHHHHHhhhCCCC
Q 030983           93 DKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWG  167 (168)
Q Consensus        93 d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~~~~P~e~mT~dd~~~a~Pe~~~~v~~~I~~g~Wg  167 (168)
                      |++++.|++++++++++|++++++|++||++|+++|++|+++| ||+|||||||+++||+++  +| .|+++.||
T Consensus        83 d~~~~~i~a~e~~~~~~a~~~~~~s~~ri~~lekeL~~i~~~~-P~~~mT~dd~~~a~Pe~~--~D-~i~~p~Wp  153 (160)
T 2cly_B           83 DKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNII-PFDQMTIEDLNEVFPETK--LD-KKKYPYWP  153 (160)
T ss_dssp             CCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHhCCHHHHHHhCchhc--cC-cccCCCCC
Confidence            9999999999999999999999999999999999999999999 999999999999999999  44 89999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2clyb1	120	f.53.1.1 (B:4-123) ATP synthase subunit d, mitocho	3e-18

>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Membrane and cell surface proteins and peptides
fold: ATP synthase D chain-like
superfamily: ATP synthase D chain-like
family: ATP synthase D chain-like
domain: ATP synthase subunit d, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.7 bits (181), Expect = 3e-18
 Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 15  AGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-S 73
           A +TIDW    +++  ++  K  A   ++++E  ++      ++P  IDW YY+  +  +
Sbjct: 3   ALKTIDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKA 60

Query: 74  RLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVR 132
            LVD +++ + +++VP   DK T +  ++    +    E   +S    +  EKE+ ++R
Sbjct: 61  GLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMR 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2clyb1	120	ATP synthase subunit d, mitochondrial {Cow (Bos ta	100.0

>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: ATP synthase D chain-like
superfamily: ATP synthase D chain-like
family: ATP synthase D chain-like
domain: ATP synthase subunit d, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-44  Score=269.11  Aligned_cols=119  Identities=24%  Similarity=0.437  Sum_probs=115.8

Q ss_pred             HhhhhhccHHHHHhhcCCHHHHHHHHHHHhhHHHHHHHHhhhcCCCCCcCCHHHHhcccC-hHHHHHHHHHhhccccccc
Q 030983           13 FKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIG-SRLVDMYKQAYESIEVPKY   91 (168)
Q Consensus        13 ~~a~~~idWa~~~~~lvp~~~~~~l~afK~r~~~~~~~l~~~~pe~pp~IDwa~Yk~~l~-~~lVD~feK~y~s~kvp~~   91 (168)
                      |+|.++|||++|+++ ||++|+++|++||+|||++.++|.. ||++||+|||+|||++|+ +||||+|||+|++|+||||
T Consensus         1 r~A~~~idWa~~~~r-vp~~q~a~~~afK~~~d~~~~~v~~-lpe~pp~IDwa~Yk~~v~~~~~VD~fek~y~alkvp~p   78 (120)
T d2clyb1           1 KLALKTIDWVAFGEI-IPRNQKAVANSLKSWNETLTSRLAT-LPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPIP   78 (120)
T ss_dssp             CCCCCCCCHHHHHTT-SCGGGHHHHHHHHHHHHHHHHHHHH-SCSSCCCCCHHHHHHTCSSTTHHHHHHHHHTTCCCCCC
T ss_pred             CchHHHccHHHHHHH-cCHhHHHHHHHHHHhhHHHHHHHHh-CcCCCCCcCHHHHHHhcccHHHHHHHHHHHhcccCCCC
Confidence            457899999999999 9999999999999999999999997 799999999999999999 9999999999999999999


Q ss_pred             cCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030983           92 VDKVTPEYKSKFDALLVELKEAEGKSLKESERLEKEIAEVRE  133 (168)
Q Consensus        92 ~d~~~~~i~a~e~~~~~~a~~~~~~s~~rI~~l~~eL~~i~~  133 (168)
                      +|++++.|++++++++++|++|+++|++||++|+++|++|+|
T Consensus        79 ~d~~t~~ida~e~e~~~~~~~~~~~s~~rI~~lekeLe~iks  120 (120)
T d2clyb1          79 EDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRN  120 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999975