Citrus Sinensis ID: 030987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Secondary Structure (PSIPRED)
ccccccccHHcHHHHHHcccEEEEEccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHccHHHHHcccEEEEEcccHHHHHHHHHHcccccccccccEEEcccHHHHHHcccccEEEHHHHHHHHHEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHcHHcHHHHHHHHcHEEEccccccccEEEEEEEcccccccccHHHHHHHHHHHHcHHcccccEEEEEEEcccccccccccHHHHHHHHHHHcHHHHHHHcEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHEEEEHHHHHHHHHHHEEEEcc
Coil and Loop (DISEMBL)
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLServyprlgkkAFTVLYVHtgvqrsenfAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFfngvggyvsllpffnfyycFNLLYWTFVTFCLIKSWIIICQ
Flexible Loop (DISEMBL)
mcsqvvseseqeELIDRLEIfkihgrdkqgrKILRIIGkffparllsVEVLKRYLservyprlgkKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Low Complexity Region (SEG)
MCsqvvseseqeeLIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSllpffnfyycfnllyWTFVTFCLIKSWIIICQ
Disordered region (IsUnstruct)
*************LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIIC*
Disordered Region (DISOPRED)
******S****EELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Disordered Region (DISEMBL)
************ELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Disordered Region (DISPRO)
*CSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLYWTFVTFCLIKSWIIICQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q292F9	542	Protein GDAP2 homolog OS=	yes	no	0.708	0.219	0.289	5e-09
Q7JUR6	540	Protein GDAP2 homolog OS=	yes	no	0.708	0.220	0.289	5e-09
Q54TH9	721	Rho GTPase-activating pro	yes	no	0.684	0.159	0.273	2e-06
Q5FWK3	439	Rho GTPase-activating pro	yes	no	0.654	0.250	0.318	8e-06
Q07960	439	Rho GTPase-activating pro	yes	no	0.654	0.250	0.318	9e-06
Q9DBL2	498	Ganglioside-induced diffe	no	no	0.684	0.230	0.278	1e-05
Q2KIX2	497	Ganglioside-induced diffe	yes	no	0.684	0.231	0.278	1e-05
Q5CZL1	496	Ganglioside-induced diffe	yes	no	0.690	0.233	0.276	1e-05
Q9NXN4	497	Ganglioside-induced diffe	no	no	0.684	0.231	0.278	1e-05
Q5XGM5	496	Ganglioside-induced diffe	N/A	no	0.690	0.233	0.284	1e-05

>sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 25  GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
           G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 447

Query: 85  GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFY 144
            +  LR +Y  +P   K+NL+A Y VHP    ++    F       +   V  LP     
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHL 507

Query: 145 Y 145
           Y
Sbjct: 508 Y 508

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 25  GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
           G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 445

Query: 85  GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFY 144
            +  LR +Y  +P   K+NL+A Y VHP    ++    F       +   V  LP     
Sbjct: 446 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHL 505

Query: 145 Y 145
           Y
Sbjct: 506 Y 506

Drosophila melanogaster (taxid: 7227)

>sp|Q54TH9|GACY_DICDI Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 7   SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
           S+S++   I+ L      G+D  GR I+ II    P R + +E +  Y    + P + ++
Sbjct: 362 SKSQRFPEIEALNFIYPAGKDNLGRTIIVIIASHLPVREMDMERVLLYTISIMDPVV-EE 420

Query: 67  AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
            + ++YVHT +  S N   ++ ++ +Y       K+NL+ +Y VHP    +  L  F
Sbjct: 421 EYVLVYVHTNMNNS-NKPSMAWMKKVYTIFNRKYKKNLKGLYIVHPTTWIKFTLGIF 476

Rho GTPase-activating protein involved in the signal transduction pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5FWK3|RHG01_MOUSE Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 15  IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
           I R +I ++ G DK GRKI+     +  P+  L    L  YL +    +  +  +T+LY+
Sbjct: 67  IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYL 125

Query: 74  HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
           H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F  L
Sbjct: 126 HHGL-TSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPL 177

GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.

Mus musculus (taxid: 10090)

>sp|Q07960|RHG01_HUMAN Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 15  IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
           I R +I ++ G DK GRKI+     +  P+  L    L  YL +    +  +  +T+LY+
Sbjct: 67  IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYL 125

Query: 74  HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
           H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F  L
Sbjct: 126 HHGL-TSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPL 177

GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.

Homo sapiens (taxid: 9606)

>sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 8   ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
           ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +  
Sbjct: 326 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 384

Query: 66  KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
           K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  T
Sbjct: 385 KEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTT 443

Query: 123 FG 124
           F 
Sbjct: 444 FS 445

Mus musculus (taxid: 10090)

>sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 8   ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
           ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +  
Sbjct: 325 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 383

Query: 66  KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
           K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  T
Sbjct: 384 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT 442

Query: 123 FG 124
           F 
Sbjct: 443 FS 444

Bos taurus (taxid: 9913)

>sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           +S +  E+L D   L+     G D  GR ++ ++G+  P  L+ +E    Y    +   +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+++YD +    K+NL+A+YFVHP  ++++   F 
Sbjct: 381 AAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFF 439

Query: 121 ATF 123
            TF
Sbjct: 440 TTF 442

Xenopus tropicalis (taxid: 8364)

>sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 8   ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
           ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +  
Sbjct: 325 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 383

Query: 66  KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
           K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  T
Sbjct: 384 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT 442

Query: 123 FG 124
           F 
Sbjct: 443 FS 444

Homo sapiens (taxid: 9606)

>sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           +S +  E+L D   L+     G D  GR ++ ++G+  P  L+ +E    Y    +   +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+++YD I    K+NL+A+YFVHP  ++++   F 
Sbjct: 381 TAKDYVLVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFF 439

Query: 121 ATF 123
            TF
Sbjct: 440 TTF 442

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
21553817	202	unknown [Arabidopsis thaliana]	0.767	0.638	0.761	7e-52
297798348	202	hypothetical protein ARALYDRAFT_491071 [	0.767	0.638	0.761	8e-52
15237117	202	SEC14 cytosolic factor family protein /	0.767	0.638	0.761	8e-52
217073614	203	unknown [Medicago truncatula]	0.660	0.546	0.828	3e-49
225431364	202	PREDICTED: ganglioside-induced different	0.726	0.603	0.756	7e-49
357483981	130	Ganglioside-induced differentiation-asso	0.660	0.853	0.819	9e-49
357483979	203	Ganglioside-induced differentiation-asso	0.660	0.546	0.819	1e-48
255579787	202	conserved hypothetical protein [Ricinus	0.767	0.638	0.713	6e-48
319993060	199	Sec14 like protein [Nicotiana benthamian	0.738	0.623	0.725	3e-47
319993062	199	Sec14 like protein [Nicotiana tabacum]	0.738	0.623	0.725	3e-47

>gi|21553817|gb|AAM62910.1| unknown [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798348|ref|XP_002867058.1| hypothetical protein ARALYDRAFT_491071 [Arabidopsis lyrata subsp. lyrata] gi|297312894|gb|EFH43317.1| hypothetical protein ARALYDRAFT_491071 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237117|ref|NP_195300.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] gi|3367593|emb|CAA20045.1| putative protein [Arabidopsis thaliana] gi|7270527|emb|CAB81484.1| putative protein [Arabidopsis thaliana] gi|17473778|gb|AAL38324.1| putative protein [Arabidopsis thaliana] gi|30725562|gb|AAP37803.1| At4g35750 [Arabidopsis thaliana] gi|332661158|gb|AEE86558.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073614|gb|ACJ85167.1| unknown [Medicago truncatula]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 104/111 (93%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR FFN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFFFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431364|ref|XP_002278653.1| PREDICTED: ganglioside-induced differentiation-associated protein 2 [Vitis vinifera] gi|297742206|emb|CBI34355.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 113/123 (91%), Gaps = 1/123 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           MC+Q  S SEQE+L+++LEIFKI GRDK+GRKILRIIGK+FPAR LSV+V+K+YL ++++
Sbjct: 1   MCAQA-SPSEQEQLVEKLEIFKIRGRDKRGRKILRIIGKYFPARTLSVDVVKKYLEDKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           P+LGKK F+VLYVHT V+RSENF GISALRSIY+AIP NVKENL+AVYFVHPGLQ+RLFL
Sbjct: 60  PKLGKKQFSVLYVHTDVERSENFPGISALRSIYEAIPVNVKENLEAVYFVHPGLQSRLFL 119

Query: 121 ATF 123
           ATF
Sbjct: 120 ATF 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483981|ref|XP_003612277.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|355513612|gb|AES95235.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/111 (81%), Positives = 103/111 (92%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR  FN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFLFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483979|ref|XP_003612276.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|355513611|gb|AES95234.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|388500088|gb|AFK38110.1| unknown [Medicago truncatula]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/111 (81%), Positives = 103/111 (92%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR  FN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFLFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579787|ref|XP_002530731.1| conserved hypothetical protein [Ricinus communis] gi|223529695|gb|EEF31637.1| conserved hypothetical protein [Ricinus communis]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 109/129 (84%)

Query: 2   CSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYP 61
            S  +S +EQ +LI++LEIFKI GRDK G  ILRIIGKFFPAR+++V+ LK YL E++YP
Sbjct: 1   MSTHISYAEQHQLIEKLEIFKILGRDKHGHNILRIIGKFFPARIITVDALKSYLEEKIYP 60

Query: 62  RLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLA 121
           RL  K F+VLYVHTGVQRSENF GISALRS+YD+IP  VKENLQA+YF+HPGLQARLFLA
Sbjct: 61  RLETKPFSVLYVHTGVQRSENFPGISALRSVYDSIPIKVKENLQALYFLHPGLQARLFLA 120

Query: 122 TFGRLFFNG 130
           TFGR  F+G
Sbjct: 121 TFGRFLFSG 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319993060|dbj|BAJ61955.1| Sec14 like protein [Nicotiana benthamiana]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 109/124 (87%)

Query: 7   SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
           SE EQE+LI++LEIFKI GRDK+GRK LRIIGKFFPAR LSVEV+K+YL+E+++P L K+
Sbjct: 3   SEVEQEQLIEKLEIFKIQGRDKRGRKTLRIIGKFFPARNLSVEVVKKYLAEKIFPELEKR 62

Query: 67  AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
            F V+YVHT V++SENF G+SALRS YDAIP  V+ENL+AVYF+HPGLQARLFLATFGR 
Sbjct: 63  PFAVVYVHTDVEKSENFPGVSALRSFYDAIPVKVRENLEAVYFLHPGLQARLFLATFGRF 122

Query: 127 FFNG 130
            F+G
Sbjct: 123 IFSG 126

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319993062|dbj|BAJ61956.1| Sec14 like protein [Nicotiana tabacum]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 109/124 (87%)

Query: 7   SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
           SE EQE+LI++LEIFKI GRDK+GRK LRIIGKFFPAR LSVEV+K+YL+E+++P L K+
Sbjct: 3   SEVEQEQLIEKLEIFKIQGRDKRGRKTLRIIGKFFPARNLSVEVVKKYLAEKIFPELEKR 62

Query: 67  AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
            F V+YVHT V++SENF G+SALRS YDAIP  V+ENL+AVYF+HPGLQARLFLATFGR 
Sbjct: 63  PFAVVYVHTDVEKSENFPGVSALRSFYDAIPVKVRENLEAVYFLHPGLQARLFLATFGRF 122

Query: 127 FFNG 130
            F+G
Sbjct: 123 IFSG 126

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2128018	202	AT4G35750 "AT4G35750" [Arabido	0.696	0.579	0.777	8.8e-47
TAIR|locus:2076234	237	AT3G10210 "AT3G10210" [Arabido	0.690	0.489	0.439	1.9e-26
FB|FBgn0042135	540	CG18812 [Drosophila melanogast	0.511	0.159	0.340	5.4e-09
UNIPROTKB|Q292F9	542	GA15091 "Protein GDAP2 homolog	0.511	0.158	0.340	5.4e-09
UNIPROTKB|E1C8K9	496	GDAP2 "Uncharacterized protein	0.607	0.205	0.289	7.7e-09
UNIPROTKB|E9PNR6	192	ARHGAP1 "Rho GTPase-activating	0.636	0.557	0.318	2e-08
UNIPROTKB|Q2KIX2	497	GDAP2 "Ganglioside-induced dif	0.577	0.195	0.294	3.4e-08
UNIPROTKB|E2RCF0	497	GDAP2 "Uncharacterized protein	0.577	0.195	0.294	3.4e-08
UNIPROTKB|Q9NXN4	497	GDAP2 "Ganglioside-induced dif	0.577	0.195	0.294	3.4e-08
UNIPROTKB|F1SAY8	497	GDAP2 "Uncharacterized protein	0.577	0.195	0.294	3.4e-08

TAIR|locus:2128018 AT4G35750 "AT4G35750" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 91/117 (77%), Positives = 107/117 (91%)

Query:    14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
             LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++PRLG+K F VLYV
Sbjct:    13 LIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYV 72

Query:    74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
             HTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFLAT GR  F+G
Sbjct:    73 HTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSG 129

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076234 AT3G10210 "AT3G10210" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 51/116 (43%), Positives = 85/116 (73%)

Query:    15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVH 74
             +D L+ F + G D+ G +I RI+GK+FPAR++S E LK+Y+S+++  +  +    ++Y+H
Sbjct:    49 LDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMH 108

Query:    75 TGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
             + VQ+ +N  GI+ LR IY+ +P+++K+ LQ VYF+HPGL++RL +AT GRL  +G
Sbjct:   109 STVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSG 164

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0042135 CG18812 [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 30/88 (34%), Positives = 50/88 (56%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct:   388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 445

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHP 112
              +  LR +Y  +P   K+NL+A Y VHP
Sbjct:   446 SLHWLREVYSVLPYKYKKNLKAFYIVHP 473

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q292F9 GA15091 "Protein GDAP2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 143 (55.4 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 30/88 (34%), Positives = 50/88 (56%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct:   390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 447

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHP 112
              +  LR +Y  +P   K+NL+A Y VHP
Sbjct:   448 SLHWLREVYSVLPYKYKKNLKAFYIVHP 475

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C8K9 GDAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 31/107 (28%), Positives = 56/107 (52%)

Query:    20 IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
             +++  G D  GR ++ ++G+  P  L+ +E    Y    V   +  K + ++Y HT +  
Sbjct:   338 LYQTVGVDNCGRTVMVVVGRNIPVTLIDMEKALLYFIH-VMDHIAVKEYVLVYFHT-LTN 395

Query:    80 SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
               N    + L+ +YD + A  K NL+A+YFVHP  ++++   F  TF
Sbjct:   396 DYNQLDSNFLKKLYDVVDAKYKRNLKALYFVHPTFRSKVSTWFFTTF 442

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|E9PNR6 ARHGAP1 "Rho GTPase-activating protein 1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:    15 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
             I R +I ++ G DK GRKI+     +  P+  L    L  YL   +  +  +  +T+LY+
Sbjct:    67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTL-DQYVESDYTLLYL 125

Query:    74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
             H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F
Sbjct:   126 HHGLT-SDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILF 174

GO:0001726 "ruffle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q2KIX2 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|E2RCF0 GDAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|Q9NXN4 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|F1SAY8 GDAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G35750	Rho-GTPase-activating protein-related; Rho-GTPase-activating protein-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cellular retinaldehyde-binding/triple function, C-terminal (InterPro-IPR001251); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G10210.1); Has 313 Blast hits to 313 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 0; Plants - 68; Viruses - 0; Oth [...] (202 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G20700	senescence-associated protein-related; senescence-associated protein-related; INVOLVED IN- biol [...] (248 aa)							•		0.921
	AT1G68440	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (306 aa)				•			•		0.803
	AT4G19860	lecithin-cholesterol acyltransferase family protein / LACT family protein; lecithin-cholesterol [...] (535 aa)				•					0.688
	AT1G31690	amine oxidase/ copper ion binding / quinone binding; amine oxidase/ copper ion binding / quinon [...] (677 aa)							•		0.675
	AT3G51730	saposin B domain-containing protein; saposin B domain-containing protein; FUNCTIONS IN- molecul [...] (213 aa)				•					0.665
	AT1G56220	dormancy/auxin associated family protein; dormancy/auxin associated family protein; FUNCTIONS I [...] (140 aa)				•					0.649
	HGO	HGO (HOMOGENTISATE 1,2-DIOXYGENASE); homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygena [...] (461 aa)				•					0.647
	GAMMA-VPE	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase; Encodes a vacuolar p [...] (494 aa)				•					0.645
	KING1	KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1); SNF1-RELATED PROTEIN KINASE REG [...] (424 aa)				•					0.641
	ATG8F	ATG8F (autophagy 8f); microtubule binding; autophagy 8f (ATG8F); FUNCTIONS IN- microtubule bind [...] (121 aa)				•					0.637

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	6e-26
smart00516	158	smart00516, SEC14, Domain in homologues of a S	6e-10
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	1e-06

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score = 96.3 bits (240), Expect = 6e-26
 Identities = 44/119 (36%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPAR-LLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQ 78
            F   GRDK+GR +L    K  PA  L  ++ L  YL   +   L  K F V+  HTGV 
Sbjct: 2   AFLSGGRDKEGRPVLVFDAKRLPASDLDDLDRLLFYLLSILSEELKPKGFVVVIDHTGVT 61

Query: 79  RSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSL 137
           R  N    S L+ +Y  +P    +NL+AVY VHP    + FL T GRLF +       +
Sbjct: 62  R--NKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFSSKKLFKKKV 118

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 15  IDRLEIFKIHGR--DKQGRKILRIIGKFFPARLLSVEVLKRYL---SERVYPRLGKKAFT 69
           ++ L+ +   GR  DK GR +L      F  + +++E L RYL    E++     +K   
Sbjct: 2   LELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQE--EKKTG 59

Query: 70  VLYVHTGVQRSENF----AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
            +   T +   +        +S LR I   +  +  E L  VY ++P    R+     
Sbjct: 60  GIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKII 117

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 12  EELIDRLEIFKIHG-RDKQGRKILRII-GKFFPARLLSVEVLKRYLSERVYPRLGKKAFT 69
            E +  L      G RDK+GR +L I  G    ++ L  E L RYL   +   L +    
Sbjct: 1   LEELKELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQ 60

Query: 70  VLYVH-----TGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPG 113
           V          G+  S      S L+ I   +  N  E L+AVY ++P 
Sbjct: 61  VEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPP 109

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.97
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.95
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.77
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.72
KOG1470	324	consensus Phosphatidylinositol transfer protein PD	99.53
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.47
KOG1471	317	consensus Phosphatidylinositol transfer protein SE	98.75
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	81.81

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.97  E-value=6.3e-32  Score=238.38  Aligned_cols=137  Identities=27%  Similarity=0.413  Sum_probs=128.7

Q ss_pred             ChhhhHhHHHhc--CCEEEecc--CCCCCeEEEEEeecCCC-CCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCccccc
Q 030987            7 SESEQEELIDRL--EIFKIHGR--DKQGRKILRIIGKFFPA-RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSE   81 (168)
Q Consensus         7 s~~e~~~di~~~--~ily~~G~--D~~GrPVvV~~a~~lP~-~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~   81 (168)
                      +.+++|.|+.+|  +++...|.  |++||+|+|+.+|++|+ +++|.-+++.|.+ +++|++++++|++||||.|+ .+.
T Consensus        66 p~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v-~~id~~Ve~DYt~vYfh~gl-~s~  143 (467)
T KOG4406|consen   66 PKEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLV-YTIDKYVENDYTLVYFHHGL-PSD  143 (467)
T ss_pred             cccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHH-HHHHHHHhccceeeehhcCC-ccc
Confidence            678899999999  99988877  99999999999999999 6788889999999 66999999999999999999 799


Q ss_pred             CcccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCceeeeeeehhhH
Q 030987           82 NFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFYYCFNLLY  151 (168)
Q Consensus        82 n~P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~~~~~~~~~~~~  151 (168)
                      |+|.++|+.++|..+||+++||+||+|+|||||++|++|.+++||||.||.+|++      |+.|+.+|.
T Consensus       144 nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~------Y~n~lseL~  207 (467)
T KOG4406|consen  144 NKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKII------YFNSLSELF  207 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeE------EeehHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999      777777764

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.95  E-value=7.3e-28  Score=184.42  Aligned_cols=121  Identities=26%  Similarity=0.406  Sum_probs=93.7

Q ss_pred             CCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCcccccCcccHHHHHHHHHhcCh
Q 030987           19 EIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA   98 (168)
Q Consensus        19 ~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~n~P~~~wL~~~y~~L~~   98 (168)
                      .+++.+|+|++||||+++.++++| +..|+|+++.|+++++.+.+.+++|++|+++++. +..|.|+++|++++|+.+|+
T Consensus         2 ~~~~~gG~d~~g~pV~~~~~~~~~-~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~-~~~~~~~~~~l~~~~~~l~~   79 (149)
T PF13716_consen    2 IFFYPGGRDREGRPVVVFIASRLP-SSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGF-SRSSEPSLSWLKQLYKLLPR   79 (149)
T ss_dssp             SE-EEEEEBTTS-EEEEEEGGG-C--TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT---GGG---HHHHHHTTTSS-H
T ss_pred             eEEEecccCCCcCEEEEEECCcCc-chhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCC-ccccCCchHHHHHHHHHHHH
Confidence            466889999999999999999994 4459999999999653388899999999999999 67899999999999999999


Q ss_pred             hhhhccceEEEEcCChHHHHHH-HHhchhhcccc-cccceecCce
Q 030987           99 NVKENLQAVYFVHPGLQARLFL-ATFGRLFFNGV-GGYVSLLPFF  141 (168)
Q Consensus        99 ~ykKNLkalYIVHPt~~~K~~l-~~~~pFissk~-~~kv~~l~~~  141 (168)
                      ++++||+++|+|||++++|.++ .+.+++.++++ .+||+.++.+
T Consensus        80 ~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl  124 (149)
T PF13716_consen   80 KYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSL  124 (149)
T ss_dssp             HHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESST
T ss_pred             HHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCH
Confidence            9999999999999999999999 66677789999 8997755544

>smart00516 SEC14 Domain in homologues of a S

Probab=99.77  E-value=1.5e-18  Score=131.94  Aligned_cols=113  Identities=25%  Similarity=0.391  Sum_probs=99.8

Q ss_pred             ccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcC--------CCCCeEEEEEcCCcccccCcccHHHHHHHHHhc
Q 030987           25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL--------GKKAFTVLYVHTGVQRSENFAGISALRSIYDAI   96 (168)
Q Consensus        25 G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~--------~~~~yvlVy~htg~~~~~n~P~~~wL~~~y~~L   96 (168)
                      |.|++||||+++.+++++.+..+.+++++|++ .++|..        ..+.+++|++.++. +..+ ++.+|++++++.+
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~i~D~~~~-~~~~-~~~~~lk~~~~~~   90 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLV-YVLEKILQREKKTGGIEGFTVIFDLKGL-SMSN-PDLSVLRKILKIL   90 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHH-HHHHHHHHHHhcCCCeeeEEEEEECCCC-Cccc-ccHHHHHHHHHHH
Confidence            79999999999999999887789999999888 445533        23578999999998 4444 7899999999999


Q ss_pred             ChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987           97 PANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF  140 (168)
Q Consensus        97 ~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~  140 (168)
                      +..|++||+++|||||++++++++++++||+++++.+||+.+..
T Consensus        91 ~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  134 (158)
T smart00516       91 QDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGN  134 (158)
T ss_pred             HHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCC
Confidence            99999999999999999999999999999999999999996654

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.72  E-value=1.8e-17  Score=123.54  Aligned_cols=120  Identities=24%  Similarity=0.321  Sum_probs=98.6

Q ss_pred             CCEEEeccCCCCCeEEEEEeec-CCCCCCCHHHHHHHHHHhhcCcCCC------CCeEEEEEcCCcccccCcc-cHHHHH
Q 030987           19 EIFKIHGRDKQGRKILRIIGKF-FPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENFA-GISALR   90 (168)
Q Consensus        19 ~ily~~G~D~~GrPVvV~~a~~-lP~~~~d~e~ll~Yvv~~~Ld~~~~------~~yvlVy~htg~~~~~n~P-~~~wL~   90 (168)
                      ++.+.+|.|++||||+++..+. -+.+..+.++++++.+ .++|....      +.+++|++.+|. +..+.. +.++++
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~i~D~~~~-~~~~~~~~~~~~k   86 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLV-YTLEKLLQEDDEQVEGFVVIIDLKGL-SLSHLLPDPSLLK   86 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHH-HHHHHHHhhhhhcccceEEEEECCCC-ChhccchhHHHHH
Confidence            5665566799999999999984 3334456688888877 34554322      479999999998 455553 778999


Q ss_pred             HHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987           91 SIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF  140 (168)
Q Consensus        91 ~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~  140 (168)
                      ++++.++..|++||+++|+|||++++++++++++||+++++.+||+.+..
T Consensus        87 ~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  136 (157)
T cd00170          87 KILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS  136 (157)
T ss_pred             HHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC
Confidence            99999999999999999999999999999999999999999999996554

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]

Probab=99.53  E-value=3.8e-14  Score=123.10  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=103.1

Q ss_pred             CChhhhHhHHHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCc------CCCCCeEEEEEcCCccc
Q 030987            6 VSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPR------LGKKAFTVLYVHTGVQR   79 (168)
Q Consensus         6 is~~e~~~di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~------~~~~~yvlVy~htg~~~   79 (168)
                      +...|.-.+++ .|-.|.+|.|+.||||+++.++.-+.+..+.+.+.++++ .+|+.      -+++.++++++.+|. +
T Consensus        86 ~~~~Ev~~e~~-tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~V-y~mE~Ai~~lp~~qe~~~~L~D~~~f-s  162 (324)
T KOG1470|consen   86 IEADEVAAELE-TGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLV-YTLENAILFLPPGQEQFVWLFDLTGF-S  162 (324)
T ss_pred             cCHHHHHHHhh-cCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHH-HHHHHHHHhCCCCcceEEEEEecccC-c
Confidence            44445444444 466668899999999999999855445456555555554 34442      367889999999999 5


Q ss_pred             ccCcccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceec
Q 030987           80 SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLL  138 (168)
Q Consensus        80 ~~n~P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l  138 (168)
                      .+| |+++.++.+...|+..|+++|...+++||+|.+..+|.+.+||+.++...||...
T Consensus       163 ~sN-~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~  220 (324)
T KOG1470|consen  163 MSN-PDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFV  220 (324)
T ss_pred             ccC-CCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEe
Confidence            555 6899999999999999999999999999999999999999999999999999833

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.47  E-value=5e-14  Score=107.10  Aligned_cols=126  Identities=23%  Similarity=0.289  Sum_probs=91.5

Q ss_pred             HHHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHH---HhhcCc----CCCCCeEEEEEcCCcccccCccc-
Q 030987           14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLS---ERVYPR----LGKKAFTVLYVHTGVQRSENFAG-   85 (168)
Q Consensus        14 di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv---~~~Ld~----~~~~~yvlVy~htg~~~~~n~P~-   85 (168)
                      ++.+.+..+..|.|++||||+++-.+++..+....+.+.++++   ...+..    -..+..++|++.+|. +..+.+. 
T Consensus         2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~-~~~~~~~~   80 (159)
T PF00650_consen    2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGF-SLSNFDWW   80 (159)
T ss_dssp             HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT---HHHHHCH
T ss_pred             HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCc-eEeccccc
Confidence            5778899999999999999999999877554444444444444   332211    223678999999999 5555543 


Q ss_pred             -HHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987           86 -ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF  140 (168)
Q Consensus        86 -~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~  140 (168)
                       .+-++.+.+.++..|+++++++|+++++++++++|++++||++++..+||+-+.+
T Consensus        81 ~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~  136 (159)
T PF00650_consen   81 PISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSG  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECT
T ss_pred             hhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECC
Confidence             7788999999999999999999999999999999999999999999999997644

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]

Probab=98.75  E-value=4e-08  Score=83.64  Aligned_cols=124  Identities=12%  Similarity=0.105  Sum_probs=90.9

Q ss_pred             HhHHHhcCCEEEeccCCCCCeEEEEEeecCCCCC----CC-----------HHHHHHHHHHhhcCc--CCCCCeEEEEEc
Q 030987           12 EELIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LS-----------VEVLKRYLSERVYPR--LGKKAFTVLYVH   74 (168)
Q Consensus        12 ~~di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~----~d-----------~e~ll~Yvv~~~Ld~--~~~~~yvlVy~h   74 (168)
                      ..++.+..-....|.|++|+|+.+-.....-.+.    ..           .++.+..+.....+.  -..+..+.|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl  167 (317)
T KOG1471|consen   88 DDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDL  167 (317)
T ss_pred             chhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEC
Confidence            3444443434467999999999988775442211    12           233333222111111  245678999999


Q ss_pred             CCcccccC--cccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccce
Q 030987           75 TGVQRSEN--FAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVS  136 (168)
Q Consensus        75 tg~~~~~n--~P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~  136 (168)
                      .|.+ -.+  .+...-++++...++..|++++++++|||.++++.++|++++||++++..+|||
T Consensus       168 ~G~~-~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~  230 (317)
T KOG1471|consen  168 KGVS-LSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIH  230 (317)
T ss_pred             CCCc-chhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhhe
Confidence            9984 343  478889999999999999999999999999999999999999999999999999

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=81.81  E-value=0.48  Score=38.04  Aligned_cols=113  Identities=10%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             HHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHH--h---hc---CcCCCCCeEEEEEcCCcccccCcccH
Q 030987           15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSE--R---VY---PRLGKKAFTVLYVHTGVQRSENFAGI   86 (168)
Q Consensus        15 i~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~--~---~L---d~~~~~~yvlVy~htg~~~~~n~P~~   86 (168)
                      +++.|.- +.|.|.+-+.|=-+.....|-.+..++.++.-.+.  .   +.   +.+.+.|+++|..-|.. ..++.|++
T Consensus        19 lA~~G~~-V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~-~~~~~~Dl   96 (185)
T PF03721_consen   19 LAEKGHQ-VIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPS-DEDGSPDL   96 (185)
T ss_dssp             HHHTTSE-EEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EB-ETTTSBET
T ss_pred             HHhCCCE-EEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCc-cccCCccH
Confidence            4555533 56888877666566666677777778888775541  1   01   11456799999999988 67889999


Q ss_pred             HHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccc
Q 030987           87 SALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (168)
Q Consensus        87 ~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~  131 (168)
                      +++.++-+.+.+..++  .+++++-.|...-+.=..+.|.+...-
T Consensus        97 s~v~~a~~~i~~~l~~--~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   97 SYVESAIESIAPVLRP--GDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HHHHHHHHHHHHHHCS--CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh--cceEEEccEEEEeeehHhhhhhhhhhc
Confidence            9999999999988777  789999998888887778888886543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	6e-22
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	2e-20

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256

 Score = 83.9 bits (207), Expect = 2e-20
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 10  EQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFT 69
           E+ + +  L IF   G  K G  I   + + F    ++ ++L  ++          K + 
Sbjct: 2   EEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHV-LLTLKPYYAKPYE 60

Query: 70  VLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFN 129
           ++   T    S  F     L   +   P    +N+ AVY  +     R +     RL   
Sbjct: 61  IVVDLTHTGPSNRF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	100.0
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.96
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.59
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	99.56
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.46
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.43
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.38

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=100.00  E-value=5.5e-35  Score=244.41  Aligned_cols=131  Identities=16%  Similarity=0.122  Sum_probs=121.5

Q ss_pred             hhhHhHHHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCcccccCcccHHH
Q 030987            9 SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISA   88 (168)
Q Consensus         9 ~e~~~di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~n~P~~~w   88 (168)
                      .|||+||++++++|++|.|++||||+|++||++|++.+|+|.|+.|++ ++++++.+++|++||+||++ +.+|.|+.+|
T Consensus         1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl-~tl~~~~~~~y~lV~d~T~~-~~~n~p~~~w   78 (256)
T 3pg7_A            1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVL-LTLKPYYAKPYEIVVDLTHT-GPSNRFKTDF   78 (256)
T ss_dssp             CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHH-HHHTTTTTSCEEEEEECTTC-CGGGCCCHHH
T ss_pred             CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHH-HHHHHhcCCCeEEEEECCCC-CcccCCcHHH
Confidence            389999999999999999999999999999999998899999999999 57999999999999999999 6899999999


Q ss_pred             HHHHHHhcChhhhhccceEEEEcCChHHHHHHHH-hchhhcccccccceecCce
Q 030987           89 LRSIYDAIPANVKENLQAVYFVHPGLQARLFLAT-FGRLFFNGVGGYVSLLPFF  141 (168)
Q Consensus        89 L~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~-~~pFissk~~~kv~~l~~~  141 (168)
                      |+++|+.+|++++|||+++|+||||+|+|.+++. .++|.++++++|++.+..+
T Consensus        79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl  132 (256)
T 3pg7_A           79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP  132 (256)
T ss_dssp             HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST
T ss_pred             HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH
Confidence            9999999999999999999999999999987766 4666777999999966554

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.59  E-value=3.6e-15  Score=121.52  Aligned_cols=124  Identities=7%  Similarity=0.080  Sum_probs=101.2

Q ss_pred             HHHhcCCE-EEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCC------CCeEEEEEcCCcccccCc--c
Q 030987           14 LIDRLEIF-KIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--A   84 (168)
Q Consensus        14 di~~~~il-y~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~------~~yvlVy~htg~~~~~n~--P   84 (168)
                      ++-+.|.. +..|+|++||||+++-...+.++..+.+.++++.+ .++|....      +.+++|++.+|. +..+.  +
T Consensus        78 ~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~-~~~E~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~  155 (262)
T 1r5l_A           78 GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSL-ITSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQI  155 (262)
T ss_dssp             HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHH-HHHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHC
T ss_pred             HHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHH-HHHHHHHhChhhcccceEEEEECCCC-CHHHHhcc
Confidence            33456654 45699999999999999877666567777777766 34554332      358999999999 45553  4


Q ss_pred             cHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987           85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP  139 (168)
Q Consensus        85 ~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~  139 (168)
                      +.+.++++.+.++..|+++|+++|||||+++++++|++++||++++..+||+.+.
T Consensus       156 ~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~  210 (262)
T 1r5l_A          156 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG  210 (262)
T ss_dssp             CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred             CHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC
Confidence            6789999999999999999999999999999999999999999999999999764

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=99.56  E-value=1e-14  Score=123.85  Aligned_cols=126  Identities=13%  Similarity=0.125  Sum_probs=102.9

Q ss_pred             hHhHHHhcCC-EEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCC------CCeEEEEEcCCcccccCc
Q 030987           11 QEELIDRLEI-FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF   83 (168)
Q Consensus        11 ~~~di~~~~i-ly~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~------~~yvlVy~htg~~~~~n~   83 (168)
                      +..++-+.|. .+..|.|++||||+++-..++..+..+.++++++++ .++|....      +.+++|++.+|. +..+.
T Consensus       134 ~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~-~~lE~~l~~~~~~v~g~v~IiD~~g~-sl~~~  211 (316)
T 3hx3_A          134 AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYC-FILEKLLENEETQINGFCIIENFKGF-TMQQA  211 (316)
T ss_dssp             HHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHH-HHHHHHTTSHHHHHHCEEEEEECTTC-CHHHH
T ss_pred             HHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHH-HHHHHHHhcccCCcceEEEEEECCCC-CHHHh
Confidence            4444445666 455699999999999998777666677888888887 45664433      479999999999 44443


Q ss_pred             --ccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceec
Q 030987           84 --AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLL  138 (168)
Q Consensus        84 --P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l  138 (168)
                        .+.+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+-.
T Consensus       212 ~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~  268 (316)
T 3hx3_A          212 ASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVH  268 (316)
T ss_dssp             HHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEE
T ss_pred             ccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEe
Confidence              3567899999999999999999999999999999999999999999999999854

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.46  E-value=5.6e-14  Score=117.17  Aligned_cols=125  Identities=14%  Similarity=0.073  Sum_probs=97.7

Q ss_pred             HHHhcCCEEEeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC--------------CCCCeEEEEEcC
Q 030987           14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL--------------GKKAFTVLYVHT   75 (168)
Q Consensus        14 di~~~~ily~~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~--------------~~~~yvlVy~ht   75 (168)
                      .+.+....+..|.|++||||+++-..++..+    ..+.++++++++ ..++.+              ..+..++|++.+
T Consensus        99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~-~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~  177 (296)
T 1aua_A           99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV-WEYESVVQYRLPACSRAAGHLVETSCTIMDLK  177 (296)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence            3444333456799999999999987766432    246777777665 223321              245699999999


Q ss_pred             CcccccCccc-HHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987           76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF  140 (168)
Q Consensus        76 g~~~~~n~P~-~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~  140 (168)
                      |. +..+.+. .+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+..
T Consensus       178 g~-s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~  242 (296)
T 1aua_A          178 GI-SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS  242 (296)
T ss_dssp             TC-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc
Confidence            99 5566654 5788999999999999999999999999999999999999999999999996643

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.43  E-value=1.4e-13  Score=119.55  Aligned_cols=115  Identities=17%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             EeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC-------------CCCCeEEEEEcCCcccccCc--
Q 030987           23 IHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF--   83 (168)
Q Consensus        23 ~~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~-------------~~~~yvlVy~htg~~~~~n~--   83 (168)
                      ..|.|++||||+++....+..+    ..+.++++++++ .++|..             ..+.+++|++.+|. +..+.  
T Consensus        88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~-~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~-sl~~~~~  165 (403)
T 1olm_A           88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM-RECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWK  165 (403)
T ss_dssp             EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCH
T ss_pred             eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHH-HHHHHHHHHHHhhHHhhCCcccceEEEEECCCC-CHHHHhh
Confidence            4699999999999998776443    356778888776 345432             13679999999998 44454  


Q ss_pred             ccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987           84 AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP  139 (168)
Q Consensus        84 P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~  139 (168)
                      |..+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+.
T Consensus       166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~  221 (403)
T 1olm_A          166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG  221 (403)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred             HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEC
Confidence            57889999999999999999999999999999999999999999999999999764

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.38  E-value=3.5e-13  Score=114.94  Aligned_cols=124  Identities=13%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             HHHhcCCEEEeccCCCCCeEEEEEeecCCCCC----CCHHHHHHHHHHhhcCc--------------CCCCCeEEEEEcC
Q 030987           14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPR--------------LGKKAFTVLYVHT   75 (168)
Q Consensus        14 di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~----~d~e~ll~Yvv~~~Ld~--------------~~~~~yvlVy~ht   75 (168)
                      .+.+....+..|+|++||||+++-...+..+.    .+.++++++++ ..+|.              ...+..++|++.+
T Consensus       114 ~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv-~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~  192 (320)
T 3q8g_A          114 KLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLV-KEYELFATYRVPACSRRAGYLIETSCTVLDLK  192 (320)
T ss_dssp             HHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHH-HHHHHHHHHhhhHHHHhcCCCcceeEEEEECC
Confidence            45566667778999999999999987664332    25566666554 22222              1235678999999


Q ss_pred             CcccccCccc-HHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987           76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP  139 (168)
Q Consensus        76 g~~~~~n~P~-~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~  139 (168)
                      |. +-.+.+. .+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+.
T Consensus       193 g~-sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~  256 (320)
T 3q8g_A          193 GI-SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILG  256 (320)
T ss_dssp             TC-CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECC
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeC
Confidence            98 5556543 678899999999999999999999999999999999999999999999998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.48
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.45
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.43

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.4e-14  Score=107.77  Aligned_cols=121  Identities=7%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             HhcCCEEE-eccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcC------CCCCeEEEEEcCCcccccC--cccH
Q 030987           16 DRLEIFKI-HGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL------GKKAFTVLYVHTGVQRSEN--FAGI   86 (168)
Q Consensus        16 ~~~~ily~-~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~------~~~~yvlVy~htg~~~~~n--~P~~   86 (168)
                      =+.|.+.. -|+|++||||+++-++++-++..+.+.++++.. .++|..      ..+.+++|.+.+|. +.++  .++.
T Consensus         6 l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~-~~~e~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~~~   83 (185)
T d1r5la2           6 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSL-ITSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQITP   83 (185)
T ss_dssp             HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHH-HHHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHCCH
T ss_pred             HHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHH-HHHHHHHhccccCCceEEEEEECCCC-CHHHhhhccH
Confidence            34555543 399999999999999887555466665555444 223322      12458999999998 4444  3788


Q ss_pred             HHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceec
Q 030987           87 SALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLL  138 (168)
Q Consensus        87 ~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l  138 (168)
                      +.++++.+.++..|+.+|+++++|||+++++++|++++||++++..+||+-.
T Consensus        84 ~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~  135 (185)
T d1r5la2          84 SVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH  135 (185)
T ss_dssp             HHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEEC
T ss_pred             HHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEe
Confidence            9999999999999999999999999999999999999999999999999854

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=110.84  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             eccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC-------------CCCCeEEEEEcCCcccccCc--c
Q 030987           24 HGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF--A   84 (168)
Q Consensus        24 ~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~-------------~~~~yvlVy~htg~~~~~n~--P   84 (168)
                      .|.|++||||+++-..++..+    ..+.++++++.+ ..+|..             .-+..++|++.+|. +-.+.  +
T Consensus        14 ~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~-~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~-s~~~~~~~   91 (199)
T d1olma3          14 CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM-RECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWKP   91 (199)
T ss_dssp             EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCHH
T ss_pred             ccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCccceEEEEEECCCC-chhhhccc
Confidence            499999999999988766432    245666776655 223321             12568999999997 44443  4


Q ss_pred             cHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987           85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP  139 (168)
Q Consensus        85 ~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~  139 (168)
                      ..+.++++.+.++..|+++|+++||||++++++++|++++||++++..+||+-+.
T Consensus        92 ~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~  146 (199)
T d1olma3          92 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG  146 (199)
T ss_dssp             HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred             cHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeC
Confidence            5789999999999999999999999999999999999999999999999999664

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=4.9e-14  Score=109.72  Aligned_cols=117  Identities=14%  Similarity=0.064  Sum_probs=91.8

Q ss_pred             EEeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC--------------CCCCeEEEEEcCCcccccCc
Q 030987           22 KIHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL--------------GKKAFTVLYVHTGVQRSENF   83 (168)
Q Consensus        22 y~~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~--------------~~~~yvlVy~htg~~~~~n~   83 (168)
                      +..|+|++||||+++-..++..+    ..+.++++++.+ ..++..              ..+.+++|.+.+|. +..+.
T Consensus        14 ~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~-~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~-s~~~~   91 (203)
T d1auaa2          14 YYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV-WEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI-SISSA   91 (203)
T ss_dssp             EEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC-CHHHH
T ss_pred             cCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHH-HHHHHHHHHHHHHhhhhccCccceEEEEEECCCC-ChHHh
Confidence            44699999999999988766542    235666666555 223321              12568999999998 34444


Q ss_pred             -ccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987           84 -AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF  140 (168)
Q Consensus        84 -P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~  140 (168)
                       +....++++.+.++..|+++|+++||||++++++++|++++||++++..+||+.+.+
T Consensus        92 ~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~  149 (203)
T d1auaa2          92 YSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS  149 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred             hhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCC
Confidence             235678999999999999999999999999999999999999999999999997643