Citrus Sinensis ID: 030988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH
Secondary Structure (PSIPRED)
ccccccccccccccEEccccccccccEEcHHHHcccccccccccHHHHHHHccccccccccccHHHHHHccccHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHcccccEEEcccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHcccEEEEEEEcccccEEEEEEEcHHHccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHccccccccEc
Coil and Loop (DISEMBL)
MLQLLASCSFLTCnlvtnkdgnvfRVYGLASVgryllpnedgvslaPIFLLSqenvnvdpwyhlkdcllegtlpfmkahnaknpfEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVskypqirginfdlphvikdapsyqgih
Flexible Loop (DISEMBL)
MLQLLASCSFLTCNlvtnkdgnVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH
Low Complexity Region (SEG)
MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH
Disordered region (IsUnstruct)
***LLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK*********
Disordered Region (DISOPRED)
MLQLLASCSFLTCNLVT***GNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA*******
Disordered Region (DISEMBL)
MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH
Disordered Region (DISPRO)
MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.457	0.535	1e-47
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.988	0.457	0.538	1e-47
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.457	0.541	1e-47
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.457	0.535	4e-47
Q43047	364	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.458	0.541	5e-47
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.462	0.517	6e-47
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.457	0.535	1e-46
Q41086	364	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.458	0.541	1e-46
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.462	0.517	2e-46
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.994	0.451	0.523	2e-46

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLA    LTC++ T +DG V R+YGLA+V +YL+ NEDGVS++ + L++Q+ V ++ 
Sbjct: 80  MLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA I+ +VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVE 246

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Medicago sativa (taxid: 3879)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 121/167 (72%), Gaps = 1/167 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S L C L    DG + R+Y LA V ++L  NEDGVS+A + L++Q+ V ++ 
Sbjct: 80  ILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDGVSMAALLLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF KA+     FEY  K  R   +FNQ M NH+ ++MKKILEIY+GF
Sbjct: 140 WYHLKDAVLEGGIPFNKAY-GMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILEIYQGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           + +  +VDV GG GA ++++VSKYP I+GINFDLPHVI+DAPSY G+
Sbjct: 199 QGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGV 245

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S LTC+L    DG V R+YGLA V ++L  NEDGVS++P+ L++Q+ V ++ 
Sbjct: 80  ILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +LEG +PF KA+     FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 140 WYYLKDAILEGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA ++ +VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVE 246

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  187 bits (474), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S LTC+L    DG V R+YGLA V ++L  NEDGVS++P+ L++Q+ V ++ 
Sbjct: 80  ILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 140 WYYLKDAILDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA ++ +VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVE 246

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1

 Score =  186 bits (472), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 120/168 (71%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S L C+L    DG V R+YGLASV ++L  NEDGVS++P+ L++Q+ V ++ 
Sbjct: 79  ILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNEDGVSVSPLCLMNQDKVLMES 138

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF KA+     FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 139 WYHLKDAILEGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESYKGF 197

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA +S +VSKYP I+GINFDLPHVI DAP++ G+ 
Sbjct: 198 EGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVE 245

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  186 bits (472), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 119/168 (70%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LL S + L C L T  DG V R+YGLA V ++L  NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 78  ILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNEDGVSMAPLALMNQDKVLMES 137

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FNQ M NH+ + MKKILE Y GF
Sbjct: 138 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGF 196

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           + +  +VDV GG GA +++++SKYP I+GINFDLPHV++DAPSY G+ 
Sbjct: 197 DGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVE 244

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 120/168 (71%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS S LT +L T  DG V R+YGL  V ++L  NE+GVS+AP+ L++Q+ V ++ 
Sbjct: 80  MLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF KA+     FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 140 WYHLKDAVLEGGIPFNKAYGM-TAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  +VDV GG GA ++++VSKYP I+GINFDLPHVI+DAP Y G+ 
Sbjct: 199 EGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVE 246

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 119/168 (70%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S L C+L    DG V R+YGLASV ++L  NEDGVS++P+ L++Q+ V ++ 
Sbjct: 79  ILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTRNEDGVSVSPLCLMNQDKVLMES 138

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF KA+     FEY     R   +FN+ M  H+ + MKKILE YKGF
Sbjct: 139 WYHLKDAILEGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSVHSKMAMKKILETYKGF 197

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA +S +VSKYP I+GINFDLPHVI DAP++ G+ 
Sbjct: 198 EGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVE 245

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LL S + L C L T  DG V R+YGLA V ++L  NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 78  ILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDKVLMES 137

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHL D +++G +PF KA+     FEY     R   +FNQ M NH+ + MKKILE Y GF
Sbjct: 138 WYHLSDAVVDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGF 196

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           + +  +VDV GG GA ++++VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 197 DGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVE 244

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S +TC+L    DG V R+YGLA V ++L  NEDGVSLAP+ L++Q+ V ++ 
Sbjct: 85  VLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMES 144

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKKI E+Y GF
Sbjct: 145 WYYLKDAILDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGF 203

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +N +VDV GG GA +S++V+KYP I+GINFDLPHVI+DAP Y G+ 
Sbjct: 204 EALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVE 251

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
154091348	365	caffeic acid O-methyl transferase [Leuca	0.994	0.457	0.547	4e-47
449438857	359	PREDICTED: caffeic acid 3-O-methyltransf	0.988	0.462	0.550	6e-47
449483224	359	PREDICTED: caffeic acid 3-O-methyltransf	0.988	0.462	0.550	6e-47
388504612	365	unknown [Lotus japonicus]	0.994	0.457	0.541	1e-46
4808524	362	catechol O-methyltransferase [Thalictrum	0.994	0.461	0.529	1e-46
4808530	362	O-methyltransferase [Thalictrum tuberosu	0.994	0.461	0.523	2e-46
261889456	365	S-adenosyl-L-methionine: caffeic acid 3-	0.994	0.457	0.535	3e-46
345651709	364	caffeic acid O-methyltransferase [Salvia	0.994	0.458	0.535	3e-46
345651711	364	caffeic acid O-methyltransferase [Salvia	0.994	0.458	0.535	3e-46
4808522	364	catechol O-methyltransferase [Thalictrum	0.994	0.458	0.523	4e-46

>gi|154091348|gb|ABS57468.1| caffeic acid O-methyl transferase [Leucaena leucocephala] gi|155966780|gb|ABU41320.1| caffeic acid o-methyl transferase [Leucaena leucocephala]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 123/168 (73%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           M++LLA  + L+C++ T  DG + R+YGLA V +YL+ NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 80  MMRLLACYNVLSCSVRTLPDGKIERLYGLAPVAKYLVKNEDGVSIAPLNLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +LEG +PF KAH   + FEY  K  R   +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYYLKDAVLEGGIPFNKAHGMTS-FEYHGKDLRFNKVFNKGMADHSTITMKKILETYTGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA IS++VSKYP I GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLTSLVDVGGGTGAVISMIVSKYPSINGINFDLPHVIEDAPSYPGVE 246

Source: Leucaena leucocephala

Species: Leucaena leucocephala

Genus: Leucaena

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438857|ref|XP_004137204.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS S LTC+L    DG+V R+YGLA V ++L+ N DGVS+AP+ L++Q+ V ++ 
Sbjct: 74  MLRLLASYSILTCSLDPLPDGSVQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMES 133

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF +A+   + FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 134 WYHLKDAVLEGGIPFNRAYGM-SAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGF 192

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E +N +VDV GG GA ++++VSKYP IRGINFDLPHVI+DAP Y G+
Sbjct: 193 EGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPPYPGV 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483224|ref|XP_004156527.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS S LTC+L    DG+V R+YGLA V ++L+ N DGVS+AP+ L++Q+ V ++ 
Sbjct: 74  MLRLLASYSILTCSLDPLPDGSVQRLYGLAPVSKFLIKNHDGVSIAPLCLMNQDKVLMES 133

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF +A+   + FEY     R   +FN+ M +H+ + MKKILE YKGF
Sbjct: 134 WYHLKDAVLEGGIPFNRAYGM-SAFEYHGTDPRFNKVFNKRMSDHSTITMKKILETYKGF 192

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E +N +VDV GG GA ++++VSKYP IRGINFDLPHVI+DAP Y G+
Sbjct: 193 EGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPPYPGV 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504612|gb|AFK40372.1| unknown [Lotus japonicus]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLA  + LTC++ T +DG V R+YGLA V +YL+ NEDGVS++ + L++Q+ V ++ 
Sbjct: 80  MLRLLACYNILTCSVRTEQDGKVQRLYGLAPVAKYLVKNEDGVSISALNLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +LEG +PF KA+     FEY     R   +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYHLKDAVLEGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA I+++VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLKSLVDVGGGTGAVINMIVSKYPTIKGINFDLPHVIEDAPSYPGVE 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808524|gb|AAD29842.1|AF064694_1 catechol O-methyltransferase [Thalictrum tuberosum]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 124/168 (73%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS   LTCNL T +DG V R+YGLA V ++L+ NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 79  ILRLLASYKVLTCNLRTLEDGGVERLYGLAPVCKFLVKNEDGVSIAPLVLMNQDKVLMES 138

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKK+LE+YKGF
Sbjct: 139 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNRGMADHSTITMKKLLELYKGF 197

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  +VDV GG GA I+++V+K+P I+GINFDLPHVI DAP+Y G+ 
Sbjct: 198 EGLKSVVDVGGGTGATINMIVTKHPTIKGINFDLPHVIDDAPAYPGVE 245

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808530|gb|AAD29845.1|AF064697_1 O-methyltransferase [Thalictrum tuberosum]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 125/168 (74%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS   LTCNL T +DG V R+YGLA V ++L+ NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 79  ILRLLASYKVLTCNLRTLEDGGVERLYGLAPVCKFLVKNEDGVSMAPLVLMNQDKVLMES 138

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKK+LE+YKGF
Sbjct: 139 WYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKLLELYKGF 197

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  +VDV GG GA ++++V+K+P I+GINFDLPHVI+DAP+Y G+ 
Sbjct: 198 EGLKSVVDVGGGTGATVNMIVTKHPTIKGINFDLPHVIEDAPAYPGVE 245

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261889456|gb|ACY06328.1| S-adenosyl-L-methionine: caffeic acid 3-0-methyltransferase [Medicago sativa]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLA  + LTC++ T +DG V R+YGLA+V +YL+ NEDGVS++ + L++Q+ V ++ 
Sbjct: 80  MLRLLACYNILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMES 139

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA I+ +VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVE 246

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345651709|gb|AEO14870.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS + L C L T  DG V R+YGLA V ++L  N+DGVS+AP+ L++Q+ V ++ 
Sbjct: 81  ILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNDDGVSVAPLALMNQDKVLMES 140

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+   + FEY     R   +FNQ M  H+ + MKKILE YKGF
Sbjct: 141 WYHLKDAVLDGEIPFNKAYGM-SAFEYHGTDPRFNKVFNQGMSGHSTITMKKILETYKGF 199

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           + +N +VDV GG+GA + ++VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 200 DGLNSVVDVGGGIGATLHMIVSKYPSIKGINFDLPHVIEDAPSYPGVE 247

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345651711|gb|AEO14871.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 122/168 (72%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS + L C L T  DG V R+YGLA V ++L  N+DGVS+AP+ L++Q+ V ++ 
Sbjct: 81  ILRLLASYAILECRLKTLPDGGVQRLYGLAPVCKFLTKNDDGVSVAPLALMNQDKVLMES 140

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+   + FEY     R   +FNQ M  H+ + MKKILE YKGF
Sbjct: 141 WYHLKDAVLDGEIPFNKAYGM-SAFEYHGTDPRFNKVFNQGMSGHSTITMKKILETYKGF 199

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           + +N +VDV GG+GA + ++VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 200 DGLNSVVDVGGGIGATLHMIVSKYPSIKGINFDLPHVIEDAPSYPGVE 247

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808522|gb|AAD29841.1|AF064693_1 catechol O-methyltransferase [Thalictrum tuberosum]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 123/168 (73%), Gaps = 1/168 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS   LTCNL   +DG V R+YGLA V ++L+ NEDGVS+AP+ L++Q+ V ++ 
Sbjct: 81  MLRLLASYKVLTCNLRNLEDGGVERLYGLAPVCKFLVKNEDGVSMAPLVLMNQDKVLMES 140

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKK+LE+YKGF
Sbjct: 141 WYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNRGMADHSTITMKKLLELYKGF 199

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  +VDV GG GA ++++V+K+P I+GINFDLPHVI DAP+Y G+ 
Sbjct: 200 EGLKSVVDVGGGTGATVNMIVTKHPTIKGINFDLPHVIDDAPAYPGVE 247

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.982	0.454	0.535	3.5e-43
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.988	0.461	0.461	2.3e-39
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.988	0.451	0.455	4.8e-39
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.994	0.460	0.431	1.1e-34
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.988	0.435	0.424	1.3e-31
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.988	0.435	0.418	5.4e-31
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.982	0.443	0.443	2.3e-30
TAIR|locus:2015223	381	AT1G63140 [Arabidopsis thalian	0.988	0.435	0.436	2.7e-29
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.994	0.441	0.416	4.4e-29
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.982	0.468	0.414	3.5e-27

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 90/168 (53%), Positives = 119/168 (70%)

Query:     1 MLQLLASCSFLTC-NLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVD 59
             +L+LL S S LTC N   + DG V R+YGL  V +YL  NEDGVS+A + L++Q+ V ++
Sbjct:    78 ILRLLTSYSVLTCSNRKLSGDG-VERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLME 136

Query:    60 PWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG 119
              WYHLKD +L+G +PF KA+   + FEY     R   +FN  M NH+ + MKKILE YKG
Sbjct:   137 SWYHLKDAILDGGIPFNKAYGM-SAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG 195

Query:   120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             FE +  LVDV GG+GA + ++VSKYP ++GINFDLPHVI+DAPS+ GI
Sbjct:   196 FEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGI 243

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/167 (46%), Positives = 115/167 (68%)

Query:     1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
             ML+LLAS + ++C +   KDG + R Y  A V ++L PNEDGVS+A + L++Q+ V ++ 
Sbjct:    77 MLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 136

Query:    61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
             WY+LKD +L+G +PF KA+   + FEY     R   +FN+ M NH+ ++ KK+LE+YKGF
Sbjct:   137 WYYLKDAVLDGGIPFNKAYGM-SAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGF 195

Query:   121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             E +  +VDV GG+GA +  + + YP I+GINFDLPHVI +A  + G+
Sbjct:   196 EGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGV 242

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 76/167 (45%), Positives = 116/167 (69%)

Query:     1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
             ML+LLAS + + C +    DG + R Y  A V ++L PNEDGVS+A + L++Q+ V ++ 
Sbjct:    84 MLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALALMNQDKVLMES 143

Query:    61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
             WY+LKD +L+G +PF KA+     FEY    AR   +FN+ M NH+ ++ KK+L++Y GF
Sbjct:   144 WYYLKDAVLDGGIPFNKAYGM-TAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDLYTGF 202

Query:   121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             +  + +VDV GG+GA ++ +VS++P IRGIN+DLPHVI +AP + G+
Sbjct:   203 DAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGV 249

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/167 (43%), Positives = 103/167 (61%)

Query:     1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
             +L+ L + S  TC LV +++G   R YGL  VG+ L+ +EDG S+AP  L          
Sbjct:    77 LLRFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGV 136

Query:    61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
             W +L + + EG     +  N    FEY  K    + +FN+SM NH ++VMKKILE Y GF
Sbjct:   137 WSYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIGF 196

Query:   121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             E ++  VDV G LG+N++ ++SKYP I+GINFDLPH++K+AP   G+
Sbjct:   197 EGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGV 243

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 73/172 (42%), Positives = 100/172 (58%)

Query:     1 MLQLLASCSFLTCNLV----TNKDGNVFRVYGLASVGRYLLPNEDGV-SLAPIFLLSQEN 55
             ML LL S S L C ++      + G + RVY    V +Y L + DG  SL P+F+L    
Sbjct:    92 MLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQ 151

Query:    56 VNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILE 115
             V    W +LKD +LEG   F  AH  K  FEY         LFN++M   + ++MKK+L+
Sbjct:   152 VFFKTWTNLKDVILEGRDAFNSAHGMKI-FEYINSDQPFAELFNRAMSEPSTMIMKKVLD 210

Query:   116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             +Y+GFE++N LVDV GG G  + L+ SKYP I+G+NFDL  V+  AP Y G+
Sbjct:   211 VYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGV 262

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 72/172 (41%), Positives = 105/172 (61%)

Query:     1 MLQLLASCSFLTCNLVTNKD----GNVFRVYGLASVGRYLLPNEDGV-SLAPIFLLSQEN 55
             ML+LL S S L C +V +++    G + RVY    + +Y L + DG  SL+ + LL    
Sbjct:    92 MLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQ 151

Query:    56 VNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILE 115
             V +  W +LKD +LEG   F  AH+ +  FEY     +   LF+++M   + +VMKK+LE
Sbjct:   152 VILKTWTNLKDVILEGKDAFSSAHDMRL-FEYISSDDQFSKLFHRAMSESSTMVMKKVLE 210

Query:   116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
              Y+GFE++N LVDV GG+G  + L+ SKYP I+G+NFDL  V+  AP Y G+
Sbjct:   211 EYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGV 262

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 75/169 (44%), Positives = 104/169 (61%)

Query:     1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPI--FLLSQENVNV 58
             ML+LLAS S LT    T +DG   RVYGL+ VG+YL+P+E    LA    FL     + V
Sbjct:    88 MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQV 147

Query:    59 DPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYK 118
               W + K+ +++  +   K  +    +E+  K  +   +FN+SM +  A  MK++LEIY 
Sbjct:   148 --WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT 205

Query:   119 GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             GFE I+ LVDV GG G N+ L++SKYP I+GINFDLP VI++AP   GI
Sbjct:   206 GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI 254

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 75/172 (43%), Positives = 99/172 (57%)

Query:     1 MLQLLASCSFLTCNLVTNKDG----NVFRVYGLASVGRYLLPNEDGV-SLAPIFLLSQEN 55
             ML LLAS S L    V   D        RVY    V  + L   DG+ SLA +F++ Q  
Sbjct:    92 MLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLATLFMVLQGE 151

Query:    56 VNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILE 115
             V + PW HLKD +LEG   F  AH  +  FE      +   +FN++M   + L+MKK+LE
Sbjct:   152 VCMKPWEHLKDMILEGKDAFTSAHGMRF-FELIGSNEQFAEMFNRAMSEASTLIMKKVLE 210

Query:   116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
             +YKGFE++N LVDV GG+G  I  + SKYP I+GINFDL  V+  AP  +G+
Sbjct:   211 VYKGFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKGV 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 72/173 (41%), Positives = 101/173 (58%)

Query:     1 MLQLLASCSFLTCNLVTNKDGN---VFRVYGLASVGRYLLPNEDGVS--LAPIFLLSQEN 55
             ML+ L S S L C  V  ++G    V RVY    V +YLL   D VS   A +F+L   +
Sbjct:    89 MLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVSGSFASLFMLDLSD 148

Query:    56 VNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILE 115
             V +  W HL+D +LEG   F  AH  K  FEY     R   +FN++M   + +V +K+L+
Sbjct:   149 VFIKTWTHLEDVILEGRDAFSSAHGMKL-FEYIQADERFGKVFNRAMLESSTMVTEKVLK 207

Query:   116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
              Y+GF+++  LVDV GGLG  + L+ SKYP + GINFDL  V+ +A SY G++
Sbjct:   208 FYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVN 260

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 70/169 (41%), Positives = 101/169 (59%)

Query:     1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGV-SLAPIFLLSQENVNVD 59
             +L+ LAS S LTC+ V+ + G  F +YGLA V +Y   N++G  SLAP+  L Q+ V  D
Sbjct:    66 ILRFLASYSILTCS-VSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTD 124

Query:    60 PWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG 119
              WY+LKD +LEG LPF   H + +  E     +R R +F  SM     + +++ L+ Y G
Sbjct:   125 MWYNLKDSVLEGGLPFNNTHGS-SAVELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNG 183

Query:   120 FEEINQLVDVAGGLGANISLLVSKYPQI-RGINFDLPHVIKDAPSYQGI 167
             F+ +  LVDV GG G+ +S ++SK+  I + INFDLP VI  +    GI
Sbjct:   184 FDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGI 232

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	COMT1	SubName- Full=Caffeic acid 3-O-methyltransferase; (365 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)						•	•		0.967
	SAD	SubName- Full=Cinnamyl alcohol dehydrogenase; (362 aa)						•	•		0.965
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)						•	•		0.947
	Ptr4CL4	SubName- Full=Putative uncharacterized protein; (570 aa)						•	•		0.947
	Ptr4CL3	SubName- Full=4-coumarate-CoA ligase; (541 aa)						•	•		0.947
	cad	SubName- Full=Cinnamyl alcohol dehydrogenase; EC=1.1.1.195; (358 aa)						•	•		0.927
	Ptr4CL8	4-coumarate-coa ligase (544 aa)						•	•		0.902
	ACLL12	4-coumarate-coa ligase (544 aa)						•	•		0.902
	gw1.XII.71.1	hypothetical protein (321 aa)						•			0.899
	gw1.X.450.1	hypothetical protein (323 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	7e-49

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  157 bits (399), Expect = 7e-49
 Identities = 62/143 (43%), Positives = 81/143 (56%), Gaps = 1/143 (0%)

Query: 25  RVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNP 84
             YGL    + L+  ED  SLAP+ L+  +   ++ W HLKD + EG  PF +A      
Sbjct: 5   EDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAF-GMPF 63

Query: 85  FEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY 144
           FEY         +FN++M  H+ LVMKKILE    F  ++ LVDV GG GA  + +V  Y
Sbjct: 64  FEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAY 123

Query: 145 PQIRGINFDLPHVIKDAPSYQGI 167
           P I+GI FDLPHVI DAPS   +
Sbjct: 124 PHIKGIVFDLPHVIADAPSADRV 146

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.96
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.89
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.79
PRK06922	677	hypothetical protein; Provisional	98.44
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.18
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.12
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.11
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.91
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.9
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.85
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.79
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.75
PRK04457	262	spermidine synthase; Provisional	97.75
PRK07402	196	precorrin-6B methylase; Provisional	97.72
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.7
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.69
PRK06202	232	hypothetical protein; Provisional	97.61
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.59
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.58
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.58
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.58
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.57
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.53
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.51
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.47
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.46
PRK11207	197	tellurite resistance protein TehB; Provisional	97.44
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.44
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.43
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.41
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.35
COG2890	280	HemK Methylase of polypeptide chain release factor	97.33
PRK08317	241	hypothetical protein; Provisional	97.32
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.32
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.32
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.31
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.3
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.29
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.27
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.25
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.24
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.19
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.19
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.16
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.16
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.15
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.14
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.13
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.13
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.13
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.13
PLN02244	340	tocopherol O-methyltransferase	97.12
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.1
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.1
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.06
PLN02366	308	spermidine synthase	97.03
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.02
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.02
PRK05785	226	hypothetical protein; Provisional	97.02
PRK01581	374	speE spermidine synthase; Validated	97.01
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.0
PRK00811	283	spermidine synthase; Provisional	96.95
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.94
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.93
PLN02490	340	MPBQ/MSBQ methyltransferase	96.92
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.92
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.92
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.91
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.9
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.9
PLN02336	475	phosphoethanolamine N-methyltransferase	96.83
TIGR00438	188	rrmJ cell division protein FtsJ.	96.83
PRK04266	226	fibrillarin; Provisional	96.8
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.76
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.75
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.73
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.73
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.73
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.72
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.72
PRK12335	287	tellurite resistance protein TehB; Provisional	96.71
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.69
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	96.66
COG4123	248	Predicted O-methyltransferase [General function pr	96.65
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	96.64
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.6
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.6
TIGR03438	301	probable methyltransferase. This model represents	96.6
PF13679	141	Methyltransf_32: Methyltransferase domain	96.6
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.56
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.56
PHA03411	279	putative methyltransferase; Provisional	96.54
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	96.51
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.48
PRK14968	188	putative methyltransferase; Provisional	96.46
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.4
PLN02672	1082	methionine S-methyltransferase	96.33
PLN03075	296	nicotianamine synthase; Provisional	96.31
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.27
PRK03612	521	spermidine synthase; Provisional	96.23
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.22
PLN02336	475	phosphoethanolamine N-methyltransferase	96.19
PRK00536	262	speE spermidine synthase; Provisional	96.18
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.16
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.15
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.14
PRK14967	223	putative methyltransferase; Provisional	96.14
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.13
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.11
KOG2904	328	consensus Predicted methyltransferase [General fun	96.03
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.02
PHA03412	241	putative methyltransferase; Provisional	96.01
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.95
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.89
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	95.89
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	95.87
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.86
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.77
PLN02823	336	spermine synthase	95.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	95.71
PRK04148	134	hypothetical protein; Provisional	95.65
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	95.64
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.6
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.59
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.58
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	95.51
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.29
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.25
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	95.21
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	95.21
KOG2899	288	consensus Predicted methyltransferase [General fun	95.17
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.1
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.02
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.02
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.95
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.83
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	94.79
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.74
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	94.73
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.7
KOG1271	227	consensus Methyltransferases [General function pre	94.64
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	94.59
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.57
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.56
PTZ00146	293	fibrillarin; Provisional	94.54
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	94.49
COG4262	508	Predicted spermidine synthase with an N-terminal m	94.32
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.25
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	94.13
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	94.1
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	93.95
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	93.89
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	93.85
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	93.77
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	93.73
KOG3115	249	consensus Methyltransferase-like protein [General	93.59
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	93.53
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	93.51
KOG2361	264	consensus Predicted methyltransferase [General fun	93.2
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	93.14
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	93.07
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	92.41
PRK14903	431	16S rRNA methyltransferase B; Provisional	92.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	91.84
KOG3010	261	consensus Methyltransferase [General function pred	91.83
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	91.75
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	91.66
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	91.37
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	91.21
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	90.75
PRK14904	445	16S rRNA methyltransferase B; Provisional	90.48
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	90.16
PRK14901	434	16S rRNA methyltransferase B; Provisional	89.94
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	89.85
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.56
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.54
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	89.53
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	89.49
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	89.16
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	88.94
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	88.84
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	88.71
PLN02668	386	indole-3-acetate carboxyl methyltransferase	88.23
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	88.07
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	87.59
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	87.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.17
PRK13256	226	thiopurine S-methyltransferase; Reviewed	86.14
PLN02476	278	O-methyltransferase	86.08
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	86.07
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	85.87
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	85.8
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	85.8
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	85.52
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	84.63
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	83.7
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	83.36
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	83.34
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	83.01
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	82.73
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	81.57
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	81.31
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	80.94
cd00006	122	PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose s	80.16

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.96  E-value=6e-30  Score=195.35  Aligned_cols=138  Identities=29%  Similarity=0.476  Sum_probs=121.7

Q ss_pred             ccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcCCCchhHHhHhcHHHHHHHHHHHH
Q 030988           24 FRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMH  103 (168)
Q Consensus        24 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~  103 (168)
                      +++|+||++|+.|+.+++..++..++.+...+..++.|.+|++++++|+++|+..+| .++|+++.++|+..+.|+++|.
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g-~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFG-TPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHS-S-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcC-CcHHHhhhhChHHHHHHHHHHH
Confidence            899999999999887765346888887755788899999999999999999999999 7899999999999999999999


Q ss_pred             HhhHHHH-HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCC
Q 030988          104 NHAALVM-KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPS  163 (168)
Q Consensus       104 ~~~~~~~-~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~  163 (168)
                      ..+...+ +.+.+.++ |+..++|||||||+|.++++++++||++++++||+|+|++.++.
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~  141 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE  141 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc
Confidence            9999887 78899999 99999999999999999999999999999999999999987653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.89  E-value=2.1e-23  Score=163.15  Aligned_cols=161  Identities=45%  Similarity=0.723  Sum_probs=144.6

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||.|+++++++...+..     . .|++++.++.++.++...|+++++....++..++.|.++.++++.+..+|..++|
T Consensus        63 ~lr~L~s~~i~k~~~~~~-----~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G  136 (342)
T KOG3178|consen   63 ILRLLVSYSILKCRLVGG-----E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHG  136 (342)
T ss_pred             HHHHHHHhhhceeeeecc-----e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccc
Confidence            589999999999974221     3 8999999999775544468999998877888999999999999999999999999


Q ss_pred             CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                       ...|+|...+....+.|+++|...+....+.+.+.|.+|+....+||||||.|..+..++..||+++++.||+|.|++.
T Consensus       137 -~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~  215 (342)
T KOG3178|consen  137 -MMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAA  215 (342)
T ss_pred             -hhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhh
Confidence             8899999998888899999999999988888999998899999999999999999999999999999999999999999


Q ss_pred             CCCC-CCCC
Q 030988          161 APSY-QGIH  168 (168)
Q Consensus       161 a~~~-~~~~  168 (168)
                      ++.+ |||+
T Consensus       216 a~~~~~gV~  224 (342)
T KOG3178|consen  216 APYLAPGVE  224 (342)
T ss_pred             hhhhcCCcc
Confidence            9988 7875

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.79  E-value=9.2e-20  Score=143.75  Aligned_cols=143  Identities=17%  Similarity=0.344  Sum_probs=100.2

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCC---ChHHHHHhhcCccccccCCcchHHHhcCCchhHh
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGV---SLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMK   77 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~   77 (168)
                      +||+|+++|+|++.         +++|+||+.++.++.++++.   ++.++..+. .......|.+|.+++| ++++|..
T Consensus        43 lL~~L~~lgll~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r-~~~~~~~  111 (306)
T TIGR02716        43 LLETLRQMRVINLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKNFKG  111 (306)
T ss_pred             HHHHHHhCCCeEec---------CCcEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhc-CCccccc
Confidence            58999999999984         78999999999877654421   112333322 1122357899999998 4444433


Q ss_pred             hcCCCchhHHhHhcHHHHHHHHHHHH-HhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988           78 AHNAKNPFEYAMKAARRRNLFNQSMH-NHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus        78 ~~g~~~~~e~~~~~p~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      ..+      +....++.. .|...|. .......+.+++.++ +++..+|||||||+|.+++.+++++|+++++++|+|+
T Consensus       112 ~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~  183 (306)
T TIGR02716       112 QVP------YPPVTREDN-LYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPG  183 (306)
T ss_pred             ccC------CCCCCHHHH-HhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHH
Confidence            222      111223322 3444443 333445566888888 9888999999999999999999999999999999999


Q ss_pred             HHhhCC
Q 030988          157 VIKDAP  162 (168)
Q Consensus       157 vi~~a~  162 (168)
                      +++.++
T Consensus       184 ~~~~a~  189 (306)
T TIGR02716       184 AIDLVN  189 (306)
T ss_pred             HHHHHH
Confidence            998765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06922 hypothetical protein; Provisional

Probab=98.44  E-value=7.2e-07  Score=76.30  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             CchhHHhHhcHHHHHHHHHHHHHhhHHH--HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH-HH
Q 030988           82 KNPFEYAMKAARRRNLFNQSMHNHAALV--MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH-VI  158 (168)
Q Consensus        82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~-vi  158 (168)
                      ..+|+++..+++..++|.+.|.....+.  .......++ +....+|||||||+|.++..+++.+|+.+++.+|+.+ .+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            5789999999998999988876644331  122234556 6677899999999999999999999999999999965 46


Q ss_pred             hhCC
Q 030988          159 KDAP  162 (168)
Q Consensus       159 ~~a~  162 (168)
                      +.++
T Consensus       456 e~Ar  459 (677)
T PRK06922        456 DTLK  459 (677)
T ss_pred             HHHH
Confidence            5544

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.18  E-value=1.6e-06  Score=57.98  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=35.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~   42 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIAR   42 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            5899999999999999999999999999998 77777654

...

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.12  E-value=1e-05  Score=62.22  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ..+++.++ .....+|||||||+|.++..+++++|+.+++.+|. |..++.++.
T Consensus        19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE   71 (255)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence            46777777 66778999999999999999999999999999999 777776653

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.11  E-value=5.5e-06  Score=60.78  Aligned_cols=49  Identities=16%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++..++ .....+|||||||+|.+++.+++++|+.+++.+|. |..++.++
T Consensus        23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~   72 (187)
T PRK08287         23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK   72 (187)
T ss_pred             HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            345555 66678999999999999999999999999999999 77666654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.91  E-value=4.4e-05  Score=51.58  Aligned_cols=49  Identities=16%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.+. .....+++|+|||+|.++..+++++|+.+++.+|. |..++.+
T Consensus        10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a   59 (124)
T TIGR02469        10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLI   59 (124)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHH
Confidence            3555565 55567999999999999999999999999999998 4555443

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.90  E-value=5.4e-05  Score=58.21  Aligned_cols=52  Identities=27%  Similarity=0.466  Sum_probs=44.0

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +..+++.++ .....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~   72 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR   72 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            346777777 77778999999999999999999999999999998 66666554

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.85  E-value=3e-05  Score=57.95  Aligned_cols=52  Identities=23%  Similarity=0.418  Sum_probs=45.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +-.++...+ ......|+|+|||+|....-++++||....+.+|- |..++.|+
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa   71 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA   71 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH
Confidence            346777788 88889999999999999999999999999999996 77777665

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.79  E-value=0.00012  Score=54.97  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             chhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988           83 NPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG-FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus        83 ~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ..|+....++.....+...|..........+++.... .....+++|||||+|.++..+++.  +.+++.+|. |..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~   92 (219)
T TIGR02021        15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM   92 (219)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence            4566666655556666666644333333445544431 334689999999999999999886  457889997 666665


Q ss_pred             CC
Q 030988          161 AP  162 (168)
Q Consensus       161 a~  162 (168)
                      ++
T Consensus        93 a~   94 (219)
T TIGR02021        93 AR   94 (219)
T ss_pred             HH
Confidence            54

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.75  E-value=4.5e-05  Score=62.01  Aligned_cols=49  Identities=18%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a~  162 (168)
                      +++.++ .....+|||+|||+|.+++.+++++|+.+++.+|.. ..++.++
T Consensus       220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~  269 (378)
T PRK15001        220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR  269 (378)
T ss_pred             HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            455555 333368999999999999999999999999999984 5565554

>PRK04457 spermidine synthase; Provisional

Probab=97.75  E-value=3e-05  Score=60.08  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      +..++|+|||+|.|.++..+++.+|+.+++++|+ |+|++.++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~  109 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNH  109 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence            4557899999999999999999999999999999 9999988743

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.72  E-value=7.3e-05  Score=55.26  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.++ .....+|+|+|||+|.++..+++..|..+++.+|. |..++.++
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~   81 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR   81 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            455566 66668999999999999999999999999999998 77776554

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.70  E-value=0.00014  Score=53.60  Aligned_cols=41  Identities=20%  Similarity=0.123  Sum_probs=35.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|..+..+++++|..+++.+|. |..++.++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~   86 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR   86 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence            357999999999999999999999999999998 55555443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.69  E-value=9.6e-05  Score=55.21  Aligned_cols=43  Identities=14%  Similarity=0.309  Sum_probs=37.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ....+|||||||+|.++..+++..|..+++.+|. |..++.|+.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~   85 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKA   85 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHh
Confidence            4557899999999999999999989999999997 778887764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06202 hypothetical protein; Provisional

Probab=97.61  E-value=0.00043  Score=52.44  Aligned_cols=44  Identities=18%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHHhhCCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSK----YPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ..+..+|+|||||+|.++..+++.    .|+.+++.+|+ |..++.++.
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~  106 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARA  106 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHh
Confidence            345679999999999998888764    46789999998 777776653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.59  E-value=0.00012  Score=54.21  Aligned_cols=40  Identities=10%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+||||||+|.++..+++++|+..++.+|. +..++.+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a   56 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA   56 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH
Confidence            457999999999999999999999999999998 6566554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.58  E-value=5e-05  Score=55.01  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+++|+|||+|.+++.+++++|+.+++..|. |..++.+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a   71 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA   71 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            457899999999999999999999999999997 5565554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.58  E-value=0.00016  Score=54.65  Aligned_cols=50  Identities=14%  Similarity=0.164  Sum_probs=40.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..++ .....+|||||||+|.++..+++.. |..+++.+|+ |..++.++
T Consensus        36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~   87 (231)
T TIGR02752        36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR   87 (231)
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            4556666 6666899999999999999999886 7789999998 66665443

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00740 methyltransferase, putative

Probab=97.58  E-value=8.4e-05  Score=56.59  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=36.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHH--CCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSK--YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..++++  +|+.+++.+|+ |..++.++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~   96 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR   96 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence            45568999999999999999997  48899999999 88887764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.57  E-value=1.8e-05  Score=51.78  Aligned_cols=37  Identities=24%  Similarity=0.498  Sum_probs=30.3

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          127 VDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       127 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ||||||+|.++..+++++|..+.+.+|. |..++.++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~   38 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARE   38 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCC
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            7999999999999999999999999998 677766653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00015  Score=56.77  Aligned_cols=50  Identities=22%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      -+++.++ .....+|+|+|||.|.+++.+++.+|+.+.+.+|. ...++.++
T Consensus       149 lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar  199 (300)
T COG2813         149 LLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR  199 (300)
T ss_pred             HHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence            4677777 44445999999999999999999999999999997 34555544

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.53  E-value=0.00011  Score=56.31  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=36.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHH--HCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVS--KYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~--~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|||||+|..+..+++  .+|+.+++.+|. |..++.++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~   99 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR   99 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence            3457999999999999999988  479999999998 88887764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.51  E-value=0.00067  Score=51.94  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+..+++.++ .....+|||||||+|.++..+.+.  ..+++.+|+ |..++.++
T Consensus        30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~   81 (251)
T PRK10258         30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQAR   81 (251)
T ss_pred             HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence            3445666666 455689999999999999888764  578899999 77776654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.47  E-value=0.00035  Score=51.18  Aligned_cols=37  Identities=14%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHh
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIK  159 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~  159 (168)
                      ..+|+|||||+|.++..+++.+|+.+++.+|.- ..++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~   80 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVA   80 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHH
Confidence            479999999999999999999999999999984 3443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.46  E-value=0.00022  Score=53.05  Aligned_cols=49  Identities=14%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .|.+.+. - ...+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus        32 ~~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~   81 (202)
T PRK00121         32 DWAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL   81 (202)
T ss_pred             CHHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH
Confidence            3455555 2 457999999999999999999999999999998 65665543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.44  E-value=0.00026  Score=52.44  Aligned_cols=49  Identities=22%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+++.++ .....+|||+|||+|..+..++++  ..+++.+|. |..++.++
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~   69 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLE   69 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence            45666666 555689999999999999999986  568999999 65665443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.44  E-value=0.0003  Score=51.46  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             HHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          114 LEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       114 ~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      +..+. .....+++|||||+|.++++++...|..+++-+|. ++.++.
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~   73 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL   73 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHH
Confidence            44555 67778999999999999999999999999999997 444443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.43  E-value=0.00024  Score=57.16  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.++ .....+|+|+|||+|.+++.+++++|+.+++.+|. +..++.++
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~  237 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR  237 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            344454 22335899999999999999999999999999998 45555443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.41  E-value=0.00041  Score=53.37  Aligned_cols=47  Identities=23%  Similarity=0.277  Sum_probs=36.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++  ....+|+|||||+|.++..+++.  ..+++.+|. |..++.|+
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~   83 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAK   83 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence            3444444  34579999999999999999987  568899998 77777654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.35  E-value=0.00045  Score=56.29  Aligned_cols=47  Identities=15%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      +++.+. -.....+||||||+|.++..+++++|+..++.+|. +..++.
T Consensus       114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~  161 (390)
T PRK14121        114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ  161 (390)
T ss_pred             HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence            444454 33457999999999999999999999999999997 444443

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0002  Score=56.12  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +|+|||+|+|..+++++++.|+++++..|. |..++.|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~  151 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR  151 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH
Confidence            899999999999999999999999999998 76666554

>PRK08317 hypothetical protein; Provisional

Probab=97.32  E-value=0.00054  Score=51.43  Aligned_cols=49  Identities=20%  Similarity=0.339  Sum_probs=39.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+.+.++ +....+|||+|||+|.++..+++.+ |..+++.+|. |..++.+
T Consensus        10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a   60 (241)
T PRK08317         10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA   60 (241)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence            3455666 7777899999999999999999998 7889999998 4444443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.32  E-value=0.00064  Score=52.39  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++|+|||+|.++..+++..|..+++.+|. |..++.++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~  127 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR  127 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            45899999999999999999999999999998 77777654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.32  E-value=0.0016  Score=49.06  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=39.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..+. .....+|+|||||+|.++..+++.+| +.+++.+|. |..++.++
T Consensus        42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~   93 (239)
T PRK00216         42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR   93 (239)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Confidence            4555555 55567999999999999999999998 789999998 55555443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.31  E-value=0.00025  Score=56.25  Aligned_cols=39  Identities=18%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+|+|||+|.+++.+++.+|+.+++.+|. |..++.|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~  174 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE  174 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999 77777654

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.30  E-value=0.00024  Score=46.66  Aligned_cols=37  Identities=27%  Similarity=0.534  Sum_probs=28.1

Q ss_pred             EEEecCCccHHHHHHHHHC---CCCeEEEccc-hHHHhhCC
Q 030988          126 LVDVAGGLGANISLLVSKY---PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       126 vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |||+|||+|.....+++.+   |..+.+.+|+ |+.++.++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~   41 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK   41 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH
Confidence            7999999999999999997   6789999997 55655543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.29  E-value=0.00074  Score=50.75  Aligned_cols=39  Identities=23%  Similarity=0.426  Sum_probs=33.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+|||||||+|.++..+++..|..+++..|. |..++.+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~   74 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA   74 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH
Confidence            47899999999999999999999999999998 4444433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.27  E-value=0.00037  Score=54.68  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=36.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.+++.+++++|+.+++.+|. |..++.|+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~  162 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE  162 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            346899999999999999999999999999998 66776654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.25  E-value=0.00087  Score=50.40  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.++..+++..+  +++.+|. |..++.++
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~  102 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEAR  102 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence            44557999999999999999998754  5889998 55665554

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.24  E-value=0.00067  Score=52.83  Aligned_cols=48  Identities=15%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.++ .....+|+|||||+|.++..++++.+  +++.+|. |..++.+
T Consensus        32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~   80 (272)
T PRK00274         32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPIL   80 (272)
T ss_pred             HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHH
Confidence            35666666 66668999999999999999999987  6677776 5555544

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.19  E-value=0.00098  Score=50.75  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~  128 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR  128 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            346899999999999999999999999999997 66666554

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.19  E-value=0.0022  Score=49.67  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=35.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|||||+|.++..+++.+ |+.+++.+|. |..++.|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~  115 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA  115 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            5566799999999999999998875 6789999998 56666553

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.16  E-value=0.00078  Score=49.83  Aligned_cols=47  Identities=21%  Similarity=0.170  Sum_probs=36.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+.+.++ .....+|+|||||+|.++..++++  ..+++.+|. |..++.+
T Consensus        21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a   68 (195)
T TIGR00477        21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASV   68 (195)
T ss_pred             HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHH
Confidence            4555565 444579999999999999999986  578999998 5556543

Part of a tellurite-reducing operon tehA and tehB

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.16  E-value=0.00041  Score=54.65  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .|-.+-+..++++. .+++.+. .++ .+|+|||||+|.++++.++.-.. +++.+|. |..++.|+
T Consensus       139 AFGTG~H~TT~lcl-~~l~~~~-~~g-~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~  201 (295)
T PF06325_consen  139 AFGTGHHPTTRLCL-ELLEKYV-KPG-KRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAAR  201 (295)
T ss_dssp             SS-SSHCHHHHHHH-HHHHHHS-STT-SEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHH
T ss_pred             cccCCCCHHHHHHH-HHHHHhc-cCC-CEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHH
Confidence            46666666777766 5566665 444 69999999999999999997443 6889997 65666554

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.15  E-value=0.00054  Score=56.34  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++|||||+|.+++.+++++|+.+++.+|. |..++.++
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar  292 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR  292 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            35899999999999999999999999999999 77777664

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.14  E-value=0.0014  Score=48.82  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a  161 (168)
                      .+++... .....+|+|+|||+|.++..+++.+|. .+++.+|. |..++.+
T Consensus        30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~   80 (223)
T TIGR01934        30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA   80 (223)
T ss_pred             HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence            4455555 456689999999999999999999998 78999998 5565544

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.13  E-value=0.001  Score=47.96  Aligned_cols=47  Identities=15%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhh
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKD  160 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~  160 (168)
                      ..+++.++ +....+++|||||+|.++..++++  ..+++.+|.- ..++.
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~   50 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPR   50 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHH
Confidence            35667777 777789999999999999999998  5678888873 34443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.13  E-value=0.001  Score=51.55  Aligned_cols=50  Identities=24%  Similarity=0.404  Sum_probs=39.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. .....+|||||||+|..+..+++.+ ..+++.+|+ |..++.++
T Consensus        42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~   92 (263)
T PTZ00098         42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAK   92 (263)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHH
Confidence            45777777 7788899999999999999998865 678999998 55555444

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.13  E-value=0.0013  Score=50.32  Aligned_cols=50  Identities=18%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++.... .....+|||||||+|-++..+++..+..+++..|. +.-++.++
T Consensus        42 ~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~   92 (238)
T COG2226          42 ALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR   92 (238)
T ss_pred             HHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence            3444443 33568999999999999999999999999999997 55666554

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.13  E-value=0.0017  Score=50.69  Aligned_cols=43  Identities=21%  Similarity=0.307  Sum_probs=39.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+.+.+. ++.-.+|||||||-|.+++-.+++| +.+++.+++
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTl  103 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTL  103 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeC
Confidence            456888888 9999999999999999999999999 999988887

>PLN02244 tocopherol O-methyltransferase

Probab=97.12  E-value=0.0013  Score=52.82  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++++ +.+++.+|+ |..++.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a  157 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARA  157 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence            456799999999999999999988 778999998 4445443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.10  E-value=0.00056  Score=53.59  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+|+|||+|.+++.+++.+|+.+++.+|. |..++.++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~  155 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE  155 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            6899999999999999999999999999998 66766554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.10  E-value=0.00051  Score=54.04  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .|-.+-+..++++. .+++.+.  ....+++|||||+|.++++.++--. -+++.+|. |..++.++
T Consensus       140 AFGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~  202 (300)
T COG2264         140 AFGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAAR  202 (300)
T ss_pred             ccCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHH
Confidence            46666666666665 6777776  4668999999999999999998632 35888898 55555554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.06  E-value=0.00061  Score=57.63  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.+++.+++++|+.+++.+|. |..++.|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~  179 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK  179 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence            36899999999999999999999999999998 66777655

>PLN02366 spermidine synthase

Probab=97.03  E-value=0.00074  Score=53.58  Aligned_cols=43  Identities=14%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++||+||||.|..+.++++. |. .+++++|+ |.|++.++.+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~  134 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKF  134 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHh
Confidence            45789999999999999999875 65 57899998 5588887753

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.02  E-value=0.0023  Score=52.27  Aligned_cols=49  Identities=14%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++.+ +.+++.+|+ |+.++.++
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~  207 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQ  207 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence            4566666 6777899999999999999998876 678999998 66666544

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.02  E-value=0.0017  Score=50.24  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|+|||+|.++..+++..|..+++..|. |..++.++
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~  149 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR  149 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            34557899999999999999999999999999997 55555443

>PRK05785 hypothetical protein; Provisional

Probab=97.02  E-value=0.001  Score=50.47  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..+++.+ +.+++.+|. |+.++.++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNL   91 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHH
Confidence            5799999999999999999987 678999998 66666654

>PRK01581 speE spermidine synthase; Validated

Probab=97.01  E-value=0.00088  Score=54.15  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=37.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      .....+||+||||.|..+.++++..|..+++++|+ |.|++.|+.+
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~  193 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV  193 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence            34567999999999999999998555578999998 7899988853

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.00  E-value=0.0031  Score=48.92  Aligned_cols=52  Identities=12%  Similarity=0.192  Sum_probs=36.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEccc-hHHHhhCCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGA----NISLLVSKYP-----QIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~P-----~l~~~v~Dl-P~vi~~a~~  163 (168)
                      +.+++.-. .....+|+|+|||+|.    +++.+++..|     +.+++..|. |..++.|+.
T Consensus        89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~  150 (264)
T smart00138       89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA  150 (264)
T ss_pred             HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence            34444333 3445799999999996    5666777665     578899998 778887763

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00811 spermidine synthase; Provisional

Probab=96.95  E-value=0.00079  Score=52.79  Aligned_cols=43  Identities=9%  Similarity=0.175  Sum_probs=36.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ++.++|+|||||.|..+..+++..+..+++++|+ |.|++.++.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~  118 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK  118 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence            4567999999999999999998545568999998 788888774

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.94  E-value=0.0029  Score=47.44  Aligned_cols=50  Identities=12%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++..+ +.+++.+|. |..++.|+
T Consensus        68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~  119 (215)
T TIGR00080        68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE  119 (215)
T ss_pred             HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            4555666 66778999999999999999999865 467888886 66666554

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.93  E-value=0.0029  Score=49.19  Aligned_cols=41  Identities=27%  Similarity=0.389  Sum_probs=33.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCC---eEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQI---RGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l---~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++..|..   +++.+|. |..++.|+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~  129 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA  129 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH
Confidence            44689999999999999999998864   5799998 56666554

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.92  E-value=0.0024  Score=51.34  Aligned_cols=49  Identities=27%  Similarity=0.291  Sum_probs=38.6

Q ss_pred             HHHHcCCCC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++... +. ...+|||||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus       104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~  154 (340)
T PLN02490        104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK  154 (340)
T ss_pred             HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            344444 43 346999999999999999999999899999998 66666554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.92  E-value=0.0021  Score=47.62  Aligned_cols=47  Identities=11%  Similarity=0.057  Sum_probs=37.8

Q ss_pred             HHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          115 EIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+ .....+++|+|||+|.+++.+++.. |..+++.+|. |..++.++
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3455 6667899999999999999998864 6789999998 77766543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.92  E-value=0.0018  Score=48.02  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=32.3

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      |-+.|+ - ....+||||||.|.+++++++.+|+...+.+|.
T Consensus        10 ~~~~f~-~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~   49 (195)
T PF02390_consen   10 WQEIFG-N-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEI   49 (195)
T ss_dssp             HHHHHT-S-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES
T ss_pred             HHHHcC-C-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEec
Confidence            444454 2 234999999999999999999999999999996

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.91  E-value=0.0013  Score=44.03  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+|+|||+|.+++.+++.. ..+++.+|+ |..++.++
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~   40 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELAR   40 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHH
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHH
Confidence            379999999999999999998 889999998 66666544

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.90  E-value=0.0048  Score=46.20  Aligned_cols=44  Identities=23%  Similarity=0.181  Sum_probs=33.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccch
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLP  155 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP  155 (168)
                      .+.+.|..+....+|||||||+|.++..++++. |.-+++.+|+-
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~   85 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL   85 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecc
Confidence            445555524556799999999999999999986 44678888864

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.90  E-value=0.0013  Score=51.65  Aligned_cols=61  Identities=20%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988           98 FNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        98 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |..+.+..+++.. .+++.+. . ...+|+|||||+|.+++.+++. +.-+++.+|. |..++.++
T Consensus       138 FgtG~h~tt~l~l-~~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~  199 (288)
T TIGR00406       138 FGTGTHPTTSLCL-EWLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESAR  199 (288)
T ss_pred             ccCCCCHHHHHHH-HHHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence            5555554545443 3455555 3 3479999999999999988874 4458899998 45555443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.83  E-value=0.0024  Score=53.46  Aligned_cols=49  Identities=18%  Similarity=0.380  Sum_probs=38.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.+. ++...+|||||||+|..++.+++.+ +.+++.+|+ |..++.|
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A  305 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFA  305 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence            34666666 6667899999999999999998876 779999998 5565554

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.83  E-value=0.0043  Score=45.45  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPH  156 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~  156 (168)
                      .+.+.+.......+|+|+|||+|.++..+++++ +..+++.+|+-+
T Consensus        22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~   67 (188)
T TIGR00438        22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP   67 (188)
T ss_pred             HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence            455556545667899999999999999999887 556778777743

>PRK04266 fibrillarin; Provisional

Probab=96.80  E-value=0.0049  Score=46.77  Aligned_cols=40  Identities=8%  Similarity=0.149  Sum_probs=34.2

Q ss_pred             HcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hH
Q 030988          116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PH  156 (168)
Q Consensus       116 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~  156 (168)
                      .++ .....+|+|+|||+|.++..+++..+.-+++.+|. |.
T Consensus        67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~  107 (226)
T PRK04266         67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR  107 (226)
T ss_pred             hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH
Confidence            456 67778999999999999999999998667899998 53

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.76  E-value=0.0052  Score=45.78  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=37.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++..+ .-+++.+|. |..++.++
T Consensus        63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~  114 (205)
T PRK13944         63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA  114 (205)
T ss_pred             HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            3455555 55567999999999999999988765 557888887 55555443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.75  E-value=0.0021  Score=46.76  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|+|||+|.++..+.+..+  +++.+|+ |..++.++
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~   58 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELR   58 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHH
Confidence            36899999999999999999887  8888997 66666544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.73  E-value=0.0018  Score=49.33  Aligned_cols=49  Identities=20%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++... .....+|||||||+|.++..++++. |+.+++..|. |..++.++
T Consensus        39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~   89 (233)
T PF01209_consen   39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVAR   89 (233)
T ss_dssp             HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHH
T ss_pred             HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHH
Confidence            444444 4556799999999999999999875 6789999998 55666554

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.73  E-value=0.0042  Score=48.01  Aligned_cols=48  Identities=15%  Similarity=0.212  Sum_probs=36.1

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhh
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKD  160 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~  160 (168)
                      ...+++..+ .....+|+|||||+|.++..++++.  .+++.+|.- ..++.
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~   66 (258)
T PRK14896         18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEF   66 (258)
T ss_pred             HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHH
Confidence            345666666 6666899999999999999999984  477888873 34443

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.73  E-value=0.0054  Score=45.99  Aligned_cols=50  Identities=12%  Similarity=0.264  Sum_probs=39.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++.. ++.+++.+|. |..++.++
T Consensus        67 ~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~  118 (212)
T PRK13942         67 IMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK  118 (212)
T ss_pred             HHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            4566666 7777899999999999998888875 4568888887 66666554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.72  E-value=0.005  Score=49.19  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      +...++.++ ..+|+|||||+|.++..+++..|. +++.+|.-
T Consensus       114 l~~~l~~l~-g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S  154 (322)
T PRK15068        114 VLPHLSPLK-GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPS  154 (322)
T ss_pred             HHHhhCCCC-CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCC
Confidence            344554233 479999999999999999999876 58999963

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.72  E-value=0.0057  Score=42.97  Aligned_cols=37  Identities=19%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHH
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVI  158 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi  158 (168)
                      .....+|||||||.|.++..+.+..+  +++.+|. |..+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~   57 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMI   57 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHH
Confidence            35668999999999999999977644  8899997 4444

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=96.71  E-value=0.0028  Score=49.65  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ++..++ .....+|||||||+|..+..+++.  ..+++.+|. |..++.+
T Consensus       112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~  158 (287)
T PRK12335        112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENL  158 (287)
T ss_pred             HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence            444444 334469999999999999999885  678999998 5555543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.69  E-value=0.0019  Score=49.59  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|||||+|.+++.+++..+. +++.+|. |..++.++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~  159 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAAR  159 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHH
Confidence            34579999999999999988776554 6889998 66666554

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=96.66  E-value=0.0029  Score=49.41  Aligned_cols=43  Identities=14%  Similarity=0.247  Sum_probs=32.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+++..+ .+.-.+|||||||-|.+++.++++| +++++.+.+
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitl   93 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITL   93 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEEC
Confidence            346777777 8888999999999999999999999 889888877

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.65  E-value=0.0037  Score=47.97  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      ++..+.......+|+|+|+|+|..++.++++.++++.+.+++-+
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~   78 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE   78 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH
Confidence            34444324557899999999999999999999999999999844

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.64  E-value=0.0021  Score=40.88  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=28.3

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          127 VDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       127 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ||||||+|..+..++++ |..+++.+|. +..++.++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~   36 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQAR   36 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH
Confidence            79999999999999998 9999999998 44455443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.60  E-value=0.0054  Score=48.40  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=42.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. ......+||.++|.|.++..+++..| +.+++.+|. |+.++.++
T Consensus         9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak   61 (296)
T PRK00050          9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK   61 (296)
T ss_pred             HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence            45677776 55557999999999999999999996 789999998 77777665

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.60  E-value=0.0041  Score=41.51  Aligned_cols=40  Identities=23%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      -|-..|. -.....+||||||+|.+.--|.+.  ..++..+|.
T Consensus        49 LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   49 LWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             HHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            4455554 346789999999999988777665  677777774

; GO: 0008168 methyltransferase activity

>TIGR03438 probable methyltransferase

Probab=96.60  E-value=0.0045  Score=48.93  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccchH-HHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLPH-VIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP~-vi~~a  161 (168)
                      ..+++.++   ...+|||+|||+|..+..++++.+ ..+++.+|+.+ .++.+
T Consensus        55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a  104 (301)
T TIGR03438        55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKES  104 (301)
T ss_pred             HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHH
Confidence            34554443   336899999999999999999988 68899999853 44433

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.60  E-value=0.0035  Score=43.94  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=32.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHHhh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSK----YPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~  160 (168)
                      -.+..+|||+|+|.|.++..++..    .|+++++.+|. |+.++.
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~   68 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES   68 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence            466789999999999999999882    38899999996 444443

>TIGR00452 methyltransferase, putative

Probab=96.56  E-value=0.0071  Score=48.18  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=31.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ++..++ .....+|+|||||+|.++..+++..+. +++.+|.
T Consensus       113 ~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDp  152 (314)
T TIGR00452       113 VLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDP  152 (314)
T ss_pred             HHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcC
Confidence            444444 333479999999999999999988775 6888896

Known examples to date are restricted to the proteobacteria.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.56  E-value=0.0087  Score=46.07  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhH-HHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC------CeEEEccc-hHHHhhCC
Q 030988           97 LFNQSMHNHAA-LVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ------IRGINFDL-PHVIKDAP  162 (168)
Q Consensus        97 ~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~------l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.+|+.--. .+-+..+.... -.....+|||+||+|-++-.+++.-+.      -+++|.|. |+.+..++
T Consensus        75 ~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk  147 (296)
T KOG1540|consen   75 IMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK  147 (296)
T ss_pred             HHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence            45566654322 22222333333 223489999999999999999999998      68999998 66665543

>PHA03411 putative methyltransferase; Provisional

Probab=96.54  E-value=0.0032  Score=49.07  Aligned_cols=40  Identities=13%  Similarity=0.287  Sum_probs=34.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|+|||+|.+++.++++.+..+++.+|. |..++.++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar  105 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK  105 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            46899999999999999999988889999998 66666554

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=96.51  E-value=0.0031  Score=50.40  Aligned_cols=38  Identities=18%  Similarity=0.067  Sum_probs=30.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..+++  ++.+++.+|. |..++.++
T Consensus       132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar  170 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIAR  170 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHH
Confidence            35899999999999998876  4788999997 56666554

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.48  E-value=0.008  Score=46.22  Aligned_cols=41  Identities=22%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ..+++..+ .....+|+|||||+|.++..++++.+.  ++.+|.
T Consensus        19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~   59 (253)
T TIGR00755        19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEI   59 (253)
T ss_pred             HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEEC
Confidence            45666677 777789999999999999999999875  666665

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14968 putative methyltransferase; Provisional

Probab=96.46  E-value=0.0047  Score=44.74  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+++|+|||+|.++..++++  ..+++.+|. |.+++.+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a   61 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECA   61 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHH
Confidence            44568999999999999999998  678899998 6676655

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.40  E-value=0.0036  Score=47.65  Aligned_cols=37  Identities=22%  Similarity=0.092  Sum_probs=32.7

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||||||-|.++..+++.-  .+++..|+ ++-|+.|+
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak   98 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAK   98 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHH
Confidence            699999999999999999994  88999997 56777776

>PLN02672 methionine S-methyltransferase

Probab=96.33  E-value=0.0037  Score=57.04  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+|+|||||+|.+++.+++++|..+++..|. |..++.|
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A  158 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA  158 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            5899999999999999999999999999998 6666655

>PLN03075 nicotianamine synthase; Provisional

Probab=96.31  E-value=0.0085  Score=47.24  Aligned_cols=42  Identities=21%  Similarity=0.137  Sum_probs=32.3

Q ss_pred             CCCCeEEEecCCccHHH--HHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANI--SLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~--~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...++|+|||||+|-++  ...++.+|+.+++.+|. |+.++.|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar  166 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVAR  166 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            36789999999988443  33445789999999998 66776665

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.27  E-value=0.0048  Score=49.16  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=30.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+|||||||+|.+++.+++.  +.+++.+|. |..++.+
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A  182 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEA  182 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence            469999999999999999986  678999998 4455444

>PRK03612 spermidine synthase; Provisional

Probab=96.23  E-value=0.0061  Score=51.83  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~~  163 (168)
                      ++.++|+|||||.|..+.++++ +|. -+++++|. |++++.++.
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELART  339 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHh
Confidence            4568999999999999999997 676 68999998 899998876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.22  E-value=0.006  Score=48.71  Aligned_cols=41  Identities=17%  Similarity=0.201  Sum_probs=34.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...++||||+|+|.+...++.+.|+.+++..|. |..++.|+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~  155 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ  155 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Confidence            457999999999998888888999999999997 66666554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.19  E-value=0.01  Score=49.73  Aligned_cols=49  Identities=24%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+.+++.++ .....++||||||+|.++..+++...  +++.+|. |..++.+
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a   75 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKN   75 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHH
Confidence            345666666 55557999999999999999999854  6788886 5555543

>PRK00536 speE spermidine synthase; Provisional

Probab=96.18  E-value=0.0052  Score=47.66  Aligned_cols=42  Identities=14%  Similarity=0.026  Sum_probs=36.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      -..+++||=||||.|..+++++| ||. +++++|+ ++|++.+++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLk-h~~-~v~mVeID~~Vv~~~k~  112 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFK-YDT-HVDFVQADEKILDSFIS  112 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHC-cCC-eeEEEECCHHHHHHHHH
Confidence            35678999999999999999999 576 9999998 779988876

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.16  E-value=0.0067  Score=47.58  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=40.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQ  165 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~  165 (168)
                      .+++++|+=||||.|..++++++..|.-+.++.|+ |.|++.++.+.
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l  120 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYL  120 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhc
Confidence            45557999999999999999999888888999998 89999988663

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.15  E-value=0.0095  Score=46.16  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|..+..+++. .|..+++.+|. |..++.++
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~  119 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKAR  119 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHH
Confidence            556689999999999988877766 46678999998 77777655

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.14  E-value=0.0084  Score=37.97  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=28.7

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHh
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIK  159 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~  159 (168)
                      +++|+|+|.|.++..+++ .+..+.+.+|.. ..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~   35 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALE   35 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHH
Confidence            589999999999999999 778899999984 3444

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14967 putative methyltransferase; Provisional

Probab=96.14  E-value=0.0098  Score=44.81  Aligned_cols=40  Identities=13%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .....+|+|+|||+|.++..+++. +..+++.+|. |..++.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRS   74 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHH
Confidence            455579999999999999998876 3458899998 445543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.13  E-value=0.014  Score=44.38  Aligned_cols=32  Identities=13%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+.+|+||||.|.+.+++++++|+.-.+.++.
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi   80 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEI   80 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEE
Confidence            36999999999999999999999999988886

>TIGR00417 speE spermidine synthase

Probab=96.11  E-value=0.0074  Score=46.93  Aligned_cols=43  Identities=14%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      +...+|++||||.|.++..+++..+.-++++.|+ |.+++.++.
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~  114 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKK  114 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHH
Confidence            4556999999999999999998766677889887 667776654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.03  E-value=0.019  Score=44.66  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      ....++|+|||+|.+++.++..-|..+++..|.-.
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~  182 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK  182 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence            34589999999999999999999999999999843

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.02  E-value=0.0048  Score=47.56  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||||||.|.++..+++.  ...++..|. +..|+.|+
T Consensus        91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~  128 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVAN  128 (282)
T ss_pred             ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHH
Confidence            67999999999999999998  577788887 55666554

>PHA03412 putative methyltransferase; Provisional

Probab=96.01  E-value=0.0075  Score=46.04  Aligned_cols=40  Identities=18%  Similarity=0.171  Sum_probs=32.5

Q ss_pred             CCeEEEecCCccHHHHHHHHHC---CCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKY---PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||+|||+|.+++.++++.   +..+++.+|+ |..++.|+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar   93 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK   93 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH
Confidence            4699999999999999999875   4678899998 55565554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.95  E-value=0.017  Score=46.11  Aligned_cols=50  Identities=12%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .+...+|+|||||+|.++..+++..+. -+++.+|. |+.++.|+
T Consensus        71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar  122 (322)
T PRK13943         71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK  122 (322)
T ss_pred             HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            3455555 666689999999999999999998874 46788887 55555443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.89  E-value=0.024  Score=42.00  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=32.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      .+++..+ .-...++||+|||.|..+.-|+++  +..++.+|.-
T Consensus        21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s   61 (192)
T PF03848_consen   21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDIS   61 (192)
T ss_dssp             HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESS
T ss_pred             HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECC
Confidence            5667777 556689999999999999999998  8899999973

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=95.89  E-value=0.012  Score=48.99  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=35.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|+|||+|.+++.+++..  .+++.+|. |..++.|+
T Consensus       288 ~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~  336 (443)
T PRK13168        288 RALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAR  336 (443)
T ss_pred             HHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence            4445455 4455799999999999999999885  57888887 55665544

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=95.87  E-value=0.012  Score=43.25  Aligned_cols=38  Identities=21%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ...+|+|||||+|.++..+++. ...+++.+|. |+.++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~   51 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLA   51 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHH
Confidence            3468999999999999888765 4566777886 444443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.86  E-value=0.011  Score=48.92  Aligned_cols=49  Identities=10%  Similarity=0.225  Sum_probs=38.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .++..++ .....+|+|+|||+|..+..+++..++.+++.+|. |..++.+
T Consensus       235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~  284 (427)
T PRK10901        235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERV  284 (427)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3445555 55567999999999999999999998888999997 5555443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.77  E-value=0.021  Score=42.91  Aligned_cols=39  Identities=10%  Similarity=0.155  Sum_probs=32.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .....+++|+|||.|..++.++++  ..+++.+|. |..++.
T Consensus        32 ~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~   71 (213)
T TIGR03840        32 LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQ   71 (213)
T ss_pred             CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHH
Confidence            344479999999999999999986  889999998 555554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02823 spermine synthase

Probab=95.71  E-value=0.012  Score=47.30  Aligned_cols=44  Identities=11%  Similarity=0.143  Sum_probs=37.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++|+-||||.|..+.++++..+.-+++++|+ |.|++.++.+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~  146 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKH  146 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence            3567899999999999999998666778999998 8899988754

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=95.71  E-value=0.015  Score=42.22  Aligned_cols=41  Identities=12%  Similarity=0.090  Sum_probs=31.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a  161 (168)
                      ....+||++|+|+|..++.+++..+..++++-|.|++++..
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l   84 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELL   84 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHH
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHH
Confidence            34579999999999999999998888899999999877654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK04148 hypothetical protein; Provisional

Probab=95.65  E-value=0.032  Score=38.92  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+.+.+. -....+++|||+|.|. ++..+.+.  +..++..|. |..++.++
T Consensus         7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~   56 (134)
T PRK04148          7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK   56 (134)
T ss_pred             HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            3555555 3334789999999996 77777765  678999997 66666543

>TIGR00478 tly hemolysin TlyA family protein

Probab=95.64  E-value=0.046  Score=41.59  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             HHHHHHcCCC-CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988          111 KKILEIYKGF-EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus       111 ~~~~~~~~~~-~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      ..+++.+. . ....+++|||||+|.++..+++. +--+++.+|.-.
T Consensus        64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~  108 (228)
T TIGR00478        64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGY  108 (228)
T ss_pred             HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCH
Confidence            35566665 3 24479999999999999999986 445789999843

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.60  E-value=0.016  Score=48.26  Aligned_cols=49  Identities=10%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a  161 (168)
                      .++..++ .....+|+|+|||+|..+..+++.. |..+++.+|. |..++.+
T Consensus       241 lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~  291 (444)
T PRK14902        241 LVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLI  291 (444)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence            3444555 5556799999999999999999986 6789999998 6655544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.59  E-value=0.02  Score=42.24  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+|+|+|||.|.++..+.+. .++++..+|+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEi   44 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEI   44 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-cCCeEEEEec
Confidence            4479999999999999777774 6888766665

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.58  E-value=0.016  Score=42.64  Aligned_cols=41  Identities=20%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+ ++|+|+|||+|.++++.+-.-|. +++.+|. |+.++.++
T Consensus        44 l~g-~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r   85 (198)
T COG2263          44 LEG-KTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIAR   85 (198)
T ss_pred             cCC-CEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHH
Confidence            444 68999999999999998887554 5677776 65555443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=95.51  E-value=0.039  Score=43.90  Aligned_cols=38  Identities=13%  Similarity=0.104  Sum_probs=30.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|+|||+|.+++.+++.  ..+++.+|. |..++.|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~  212 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAK  212 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHH
Confidence            379999999999999999984  468899997 66666554

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.29  E-value=0.075  Score=40.03  Aligned_cols=38  Identities=18%  Similarity=0.074  Sum_probs=29.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a  161 (168)
                      ...+|||||||+|.++..+++.  ..+++..|.. ..++.+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a   86 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVA   86 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHH
Confidence            4578999999999999988886  4678888874 444433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.25  E-value=0.011  Score=44.93  Aligned_cols=41  Identities=12%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      .++...+ ...+.+++|+|||+|..+.++...-..+.  .+|+-
T Consensus       116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~lt--GvDiS  156 (287)
T COG4976         116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLT--GVDIS  156 (287)
T ss_pred             HHHHhcc-CCccceeeecccCcCcccHhHHHHHhhcc--CCchh
Confidence            4455555 55689999999999999999888755554  44553

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=95.21  E-value=0.041  Score=40.93  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=28.8

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++|+|||+|.++++++.+.. .+++.+|. |..++.+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a   92 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQL   92 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHH
Confidence            36899999999999998766654 57888886 5555543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=95.21  E-value=0.053  Score=42.80  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ..+++..+ .....+|+|||||+|.+...+++...  +++.+|+
T Consensus        26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEi   66 (294)
T PTZ00338         26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEI   66 (294)
T ss_pred             HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEEC
Confidence            35666666 66668999999999999999999854  5666665

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=95.17  E-value=0.033  Score=42.69  Aligned_cols=52  Identities=19%  Similarity=0.274  Sum_probs=41.5

Q ss_pred             HHHHHHcC-CCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYK-GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~-~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+++.+. +|-....++||||..|.+++.+++.+-....+.+|. |.-|+.|+
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar   99 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR   99 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH
Confidence            34555554 266678999999999999999999999999999998 44555554

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.10  E-value=0.043  Score=43.38  Aligned_cols=39  Identities=13%  Similarity=0.206  Sum_probs=28.6

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                      +...++++++ ++|+|||||+|-++..++++-|. .++.+|
T Consensus       107 l~p~l~~L~g-k~VLDIGC~nGY~~frM~~~GA~-~ViGiD  145 (315)
T PF08003_consen  107 LLPHLPDLKG-KRVLDIGCNNGYYSFRMLGRGAK-SVIGID  145 (315)
T ss_pred             HHhhhCCcCC-CEEEEecCCCcHHHHHHhhcCCC-EEEEEC
Confidence            3444432555 79999999999999999998554 256666

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.02  E-value=0.055  Score=40.81  Aligned_cols=39  Identities=8%  Similarity=0.116  Sum_probs=31.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .....+|+|+|||.|..++.|+++  +.+++.+|. |..++.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~   74 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQ   74 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHH
Confidence            344479999999999999999985  889999998 444554

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.02  E-value=0.033  Score=40.40  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             HHHHHHcCCCC--CCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchHH
Q 030988          111 KKILEIYKGFE--EINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPHV  157 (168)
Q Consensus       111 ~~~~~~~~~~~--~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~v  157 (168)
                      ..+.+.|+-++  ...++||+|+++|.++..++++. +..+++.+|+...
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45666666233  35899999999999999999998 7788899998654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.95  E-value=0.07  Score=39.74  Aligned_cols=47  Identities=13%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .++...+ .....+|+|||||+|.++..+++...  +++.+|. |..++.+
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a  116 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEA  116 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHH
Confidence            3444555 66678999999999999887777653  5666775 5555444

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.83  E-value=0.033  Score=41.63  Aligned_cols=38  Identities=21%  Similarity=0.027  Sum_probs=29.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|+|+|||+|.++..+++..+  +++..|+ |..++.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a   83 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVA   83 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHH
Confidence            357999999999999999888654  5888887 3444443

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=94.79  E-value=0.044  Score=44.68  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=29.4

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+|++||+|.+++.++..  ..+++.+|. |..++.++
T Consensus       235 ~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~  272 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQ  272 (374)
T ss_pred             CEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHH
Confidence            68999999999999999864  467888886 55665444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.74  E-value=0.028  Score=43.22  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=35.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++||=||||.|..+.++++..|..+++++|+ |.|++.++.+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~  119 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKY  119 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHh
Confidence            4678999999999999999998666778999998 8888887643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=94.73  E-value=0.041  Score=40.53  Aligned_cols=36  Identities=17%  Similarity=0.057  Sum_probs=29.3

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .+++|++||+|.++++++.+... +++.+|. +..++.
T Consensus        51 ~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~   87 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQT   87 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHH
Confidence            68999999999999999999764 7888887 444443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.70  E-value=0.042  Score=41.03  Aligned_cols=30  Identities=17%  Similarity=0.345  Sum_probs=26.3

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +||.||.|+|+.+..+++++|+++-.==|.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~   57 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDP   57 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCC
Confidence            599999999999999999999998644444

The function of this family is unknown.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=94.64  E-value=0.059  Score=39.65  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=25.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +..+|||+|||+|+++..|++. ++. +-+..|. |..++.|
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA  107 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELA  107 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHH
Confidence            3349999999999999998876 333 2244454 3344433

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=94.59  E-value=0.065  Score=44.44  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+... .....+|+|+|||+|.+++.+++..  -+++.+|. |..++.|+
T Consensus       284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~  331 (431)
T TIGR00479       284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQ  331 (431)
T ss_pred             HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHH
Confidence            344444 5556799999999999999999874  36788887 66766654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.57  E-value=0.13  Score=39.14  Aligned_cols=43  Identities=9%  Similarity=0.050  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.+++||||+|+|.-++.+++..| +-+++.+|. |+.++.|+
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~  110 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL  110 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            44568999999999999999998865 678999998 55666554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.56  E-value=0.043  Score=46.55  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ....+||||||.|.+...+++++|+..++.+|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~  379 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV  379 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEe
Confidence            358999999999999999999999999988886

>PTZ00146 fibrillarin; Provisional

Probab=94.54  E-value=0.075  Score=41.88  Aligned_cols=36  Identities=6%  Similarity=0.051  Sum_probs=29.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP  155 (168)
                      +..-.+|||+|||+|.++..+++... .=+++.+|.-
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s  166 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS  166 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence            55667999999999999999999863 4478888864

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.49  E-value=0.065  Score=38.00  Aligned_cols=47  Identities=23%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-P~vi~~a  161 (168)
                      .+-+.|+++++ +.+.|+|||.|-++  +.-.+|..+ ++.||+ |+.++..
T Consensus        39 ~Ih~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf   87 (185)
T KOG3420|consen   39 TIHNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIF   87 (185)
T ss_pred             HHHhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHH
Confidence            34556663554 79999999999999  444566765 689998 6666543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=94.32  E-value=0.083  Score=42.93  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=35.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCC-eEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQI-RGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-P~vi~~a~  162 (168)
                      +..+++-+|||.|..+++++| ||+. +.+..|| |.+||.++
T Consensus       289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~  330 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELAS  330 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhh
Confidence            457899999999999999987 8965 6899999 89999877

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.25  E-value=0.057  Score=44.76  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .++..++ .....+|+|+|+|+|..+..+++..|..+++.+|. |..++.
T Consensus       229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~  277 (426)
T TIGR00563       229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR  277 (426)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            3455555 55557999999999999999999988778899997 555543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=94.13  E-value=0.07  Score=42.80  Aligned_cols=40  Identities=13%  Similarity=0.063  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      .-++|+|||||+|.+++-.+++. --++..+|--++++.|.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~   99 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFAR   99 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHH
Confidence            34899999999999999999987 55678888776666554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=94.10  E-value=0.1  Score=39.13  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ ...-.+|+|||+|+|.++.-+++..- .-+++.+|. |..++.|+
T Consensus        63 ~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~  114 (209)
T PF01135_consen   63 RMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR  114 (209)
T ss_dssp             HHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred             HHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence            4677777 88888999999999999988888743 335666664 66666554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=93.95  E-value=0.14  Score=38.65  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ..+++|||.|.|.=++-++=.+|+++++++|-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles   99 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLES   99 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEcc
Confidence            58999999999998888888999999999983

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=93.89  E-value=0.15  Score=37.44  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=27.2

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +++|||.|.|.=++-++=.+|+++++++|-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs   80 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVES   80 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEES
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeC
Confidence            899999999999999999999999999984

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=93.85  E-value=0.059  Score=40.81  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             HHHHcCCCCC--CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEE--INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~--~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..+ +..  ..-|+|||||+|.-+..+...  ....+.+|. |+.++.|.
T Consensus        40 aLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~   89 (270)
T KOG1541|consen   40 ALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAV   89 (270)
T ss_pred             HHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHH
Confidence            344444 444  689999999999887777654  567788887 66666654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=93.77  E-value=0.15  Score=40.71  Aligned_cols=47  Identities=15%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .++.... +....+|+|+|||+|.++++.+..  ..+++..|. |..++.+
T Consensus       173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a  220 (329)
T TIGR01177       173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGA  220 (329)
T ss_pred             HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHH
Confidence            3444445 666779999999999999887654  678888898 5555543

This family is found exclusively in the Archaea.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=93.73  E-value=0.44  Score=35.80  Aligned_cols=69  Identities=12%  Similarity=0.141  Sum_probs=35.8

Q ss_pred             chhHHhHhcHHHHHHHHHHHHH----hhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988           83 NPFEYAMKAARRRNLFNQSMHN----HAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus        83 ~~~e~~~~~p~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .-++.+.++|+.-+.|+++-+.    +-....+.+++.+..-+....|.|.|||.+.++.++.+   ..++.-|||
T Consensus        29 ~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDL  101 (219)
T PF05148_consen   29 EALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDL  101 (219)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEES
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeec
Confidence            4556677888765545444332    11123345666665233457999999999999977643   345666776

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=93.59  E-value=0.042  Score=41.02  Aligned_cols=32  Identities=19%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      -..++|||||.|.++..+...||+--.+.++.
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI   92 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI   92 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehh
Confidence            36899999999999999999999976655554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=93.53  E-value=0.17  Score=39.15  Aligned_cols=43  Identities=21%  Similarity=0.358  Sum_probs=34.9

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+..+++..+ ......|+|||.|.|.+...+++..  -+.++++.
T Consensus        18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~   60 (262)
T PF00398_consen   18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEI   60 (262)
T ss_dssp             HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEES
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecC
Confidence            3457788887 7778899999999999999999997  55555554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=93.51  E-value=0.16  Score=42.44  Aligned_cols=66  Identities=9%  Similarity=0.158  Sum_probs=41.4

Q ss_pred             CchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCC---CCCCeEEEecCCccHHHHHHHHHC----CCCeEEEccc
Q 030988           82 KNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF---EEINQLVDVAGGLGANISLLVSKY----PQIRGINFDL  154 (168)
Q Consensus        82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vvDvGGg~G~~~~~l~~~~----P~l~~~v~Dl  154 (168)
                      ...||.+++||..-+.|.+++..       .+.+....-   .....|+|||+|+|.++...+++-    -..++..++-
T Consensus       150 s~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk  222 (448)
T PF05185_consen  150 SQTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK  222 (448)
T ss_dssp             HHHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred             cccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence            46788888898877777777522       333333311   125789999999999987776654    3456666664

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.20  E-value=0.17  Score=38.80  Aligned_cols=39  Identities=21%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             CeEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQ--IRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+.||||.|...--+++.+|+  |+...+|. |..|+..+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk  114 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK  114 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence            38999999999999999999999  99999997 66666554

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=93.14  E-value=0.37  Score=35.67  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchHHH
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPHVI  158 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~vi  158 (168)
                      .+-+.|.-++...+|+|+|+.+|.++.-..++- |+=.+..+|+-++.
T Consensus        59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~  106 (232)
T KOG4589|consen   59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE  106 (232)
T ss_pred             eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc
Confidence            344455534567899999999999998776665 99888999986544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=93.07  E-value=0.18  Score=40.80  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++|++||+|.+++.+++...  +++.+|. ++.++.++
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~  236 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQ  236 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHH
Confidence            3699999999999999998864  7788886 55555444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=92.41  E-value=0.31  Score=36.43  Aligned_cols=42  Identities=14%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+++.+. +.....++|||+|.|......+..++--+++.+++
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi   74 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEI   74 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEe
Confidence            4556666 77778999999999999888887777666777775

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=92.20  E-value=0.22  Score=41.48  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=35.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhh
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKD  160 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~  160 (168)
                      +....+ .....+|+|+|+|+|..+..+++.. +.-+++.+|+ +.-++.
T Consensus       229 ~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~  277 (431)
T PRK14903        229 VPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL  277 (431)
T ss_pred             HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence            333445 5556799999999999999998876 5678899997 444443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=91.84  E-value=0.3  Score=39.71  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++|++||+|.+++.+++...  +++.+|. |..++.++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~  245 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQ  245 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHH
Confidence            4699999999999999998864  6777776 44554443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=91.83  E-value=0.15  Score=39.07  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQ  165 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~  165 (168)
                      ..+.++|||||+|+.++.++..|.+  +|..|. +..++.+++.+
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~   75 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHP   75 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCC
Confidence            4459999999999888888887655  466676 55666666554

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=91.75  E-value=0.27  Score=39.71  Aligned_cols=43  Identities=14%  Similarity=0.014  Sum_probs=33.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ  165 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~  165 (168)
                      ....++||||+++|.++.-++++  +.+++.+|.-+..+.....+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~  252 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTG  252 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCC
Confidence            35589999999999999999998  66999999655444333333

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=91.66  E-value=0.59  Score=36.26  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=36.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+++..+ .+....|+.||.|.|.+...++++-..+.++=.|.
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~   62 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR   62 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH
Confidence            456777777 66678999999999999999999988877777764

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.37  E-value=0.51  Score=36.84  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl  154 (168)
                      .+....++|. ..+|||+|+|+|..+.++...+|.+. .+++|.
T Consensus        24 El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~   66 (274)
T PF09243_consen   24 ELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDR   66 (274)
T ss_pred             HHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecC
Confidence            3444444344 46999999999999999999999764 688886

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=91.21  E-value=0.22  Score=37.03  Aligned_cols=45  Identities=16%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             HHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          115 EIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++ -....+++++|||.|.+...|+.+.  -+.++.|. |..++.|+
T Consensus        37 aaLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar   82 (201)
T PF05401_consen   37 AALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARAR   82 (201)
T ss_dssp             HHHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHH
T ss_pred             HhcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHH
Confidence            3466 5677899999999999999999884  46788898 77777665

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.75  E-value=1.3  Score=33.20  Aligned_cols=56  Identities=18%  Similarity=0.167  Sum_probs=40.6

Q ss_pred             HHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccchH
Q 030988          101 SMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDLPH  156 (168)
Q Consensus       101 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~DlP~  156 (168)
                      +..+.+......+.+.|.-++....|+|+|..+|.++.-+++.-.. -+++.+|+-+
T Consensus        24 gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p   80 (205)
T COG0293          24 GYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP   80 (205)
T ss_pred             cccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence            3444555555677777764678899999999999999976665443 5578888643

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=90.48  E-value=0.38  Score=40.17  Aligned_cols=42  Identities=10%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a  161 (168)
                      .....+|+|+|||+|..+..+++..+ .-+++.+|. |.-++.+
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~  291 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKI  291 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence            44457999999999999988887654 457899997 4444433

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.16  E-value=0.67  Score=34.78  Aligned_cols=48  Identities=13%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .+...+|++||+|+|-.+.-+++.--  +++-+++ ++..+.|+
T Consensus        63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~  111 (209)
T COG2518          63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQAR  111 (209)
T ss_pred             HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHH
Confidence            4566677 88889999999999998888877644  6666665 44444443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=89.94  E-value=0.5  Score=39.33  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a  161 (168)
                      ++..++ .....+|+|+|+|+|..+..+++... .-+++.+|. ++-++.+
T Consensus       244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~  293 (434)
T PRK14901        244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKL  293 (434)
T ss_pred             HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence            344455 55557999999999999999998864 468899997 5444433

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=89.85  E-value=0.47  Score=37.42  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHHhh
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQ--IRGINFDL-PHVIKD  160 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~  160 (168)
                      ....+||||.||+|.+....+..+|.  .++.+-|. |.-++.
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~  176 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEK  176 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHH
Confidence            35689999999999999999999998  67888887 544443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.56  E-value=1.5  Score=31.97  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                      .++..+...+...-..+.+.+....+..+||-+|+|-=.....+...+++++.+=+|+|+|++.
T Consensus        53 ~~~~~~~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~  116 (183)
T PF04072_consen   53 GINRGYAARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIAL  116 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHH
Confidence            3444544444443222333231023456999999999999999999888999999999999874

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=89.54  E-value=0.5  Score=38.76  Aligned_cols=39  Identities=10%  Similarity=0.032  Sum_probs=32.7

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|+|+++|+|.+++.+++..+..+++..|. |..++.++
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~   98 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK   98 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            5899999999999999999888668899997 66665543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=89.53  E-value=0.32  Score=40.96  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCe
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIR  148 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~  148 (168)
                      ...++++|||||.|.++..++.+  ++.
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r--~V~  141 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER--NVT  141 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC--Cce
Confidence            45799999999999999999998  544

; GO: 0008168 methyltransferase activity

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=89.49  E-value=1  Score=35.83  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. ......+||.=.|.|..+.+++++.|+.+++.+|. |..++.++
T Consensus        10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak   61 (305)
T TIGR00006        10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK   61 (305)
T ss_pred             HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            45677666 55557999999999999999999998889999998 66776654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=89.16  E-value=0.61  Score=34.87  Aligned_cols=43  Identities=12%  Similarity=0.177  Sum_probs=34.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.++||.||++.|.-++.++++.| +.+++.+|. |+..+.|+
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~   87 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR   87 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH
Confidence            34568999999999999999999988 478988887 55555543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=88.94  E-value=0.51  Score=38.87  Aligned_cols=39  Identities=8%  Similarity=-0.019  Sum_probs=29.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|+|||+|.++++.+.. ...+++.+|. |..++.++
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~  260 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIAR  260 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence            478999999999998876653 3458899997 55555443

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=88.84  E-value=0.73  Score=35.67  Aligned_cols=40  Identities=10%  Similarity=0.100  Sum_probs=31.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIK  159 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~  159 (168)
                      .....+|+|+|+|+|..+..+++...+ -+++.+|. |.-++
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~  110 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK  110 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence            445579999999999999999887754 57888887 44444

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=88.71  E-value=1.4  Score=35.71  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=17.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHH
Q 030988          120 FEEINQLVDVAGGLGANISLLVSK  143 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~  143 (168)
                      |+. +.|||||+|+|.++.-.+++
T Consensus       176 F~~-kiVlDVGaGSGILS~FAaqA  198 (517)
T KOG1500|consen  176 FQD-KIVLDVGAGSGILSFFAAQA  198 (517)
T ss_pred             cCC-cEEEEecCCccHHHHHHHHh
Confidence            655 79999999999877655544

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=88.23  E-value=1.9  Score=35.43  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCccHHHH--------HHHHH-------CCCCeEEEccch
Q 030988          122 EINQLVDVAGGLGANIS--------LLVSK-------YPQIRGINFDLP  155 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~--------~l~~~-------~P~l~~~v~DlP  155 (168)
                      +.-.|+|+|||+|..+.        ++.++       -|++++..=|||
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP  111 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP  111 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence            45689999999996543        23332       367888999998

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=88.07  E-value=2  Score=33.48  Aligned_cols=50  Identities=24%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             HHHHHcCCCC-CCCeEEEecCCcc---HHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFE-EINQLVDVAGGLG---ANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~-~~~~vvDvGGg~G---~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++.+. -. ++.++||||+|.-   ..-.-..+..|+.+++-.|- |-|+..++
T Consensus        58 RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~r  112 (267)
T PF04672_consen   58 RAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHAR  112 (267)
T ss_dssp             HHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCH
T ss_pred             HHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHH
Confidence            3445444 34 7899999999976   45555577799999999997 77777765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=87.59  E-value=1.1  Score=35.63  Aligned_cols=51  Identities=27%  Similarity=0.333  Sum_probs=38.4

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. ......+||.==|.|.++.++++++|+.+.+.+|+ |..++.++
T Consensus        10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~   61 (310)
T PF01795_consen   10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK   61 (310)
T ss_dssp             HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred             HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence            46677776 66667999999999999999999999999999998 77776554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=87.48  E-value=0.68  Score=40.99  Aligned_cols=39  Identities=8%  Similarity=-0.027  Sum_probs=30.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++|+|+|||+|.+++.+++. ..-+++.+|. +..++.++
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~  578 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAE  578 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence            479999999999999999986 3336899998 55666554

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.17  E-value=2.6  Score=32.75  Aligned_cols=36  Identities=14%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-----PQIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-----P~l~~~v~DlP  155 (168)
                      +.+...+|+.|+|.|.++..+.+..     +..+.+++|+-
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~   56 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA   56 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence            6677899999999999999999999     56678999973

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=86.14  E-value=1.6  Score=33.14  Aligned_cols=39  Identities=13%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .....+|++.|||.|..+.-|++.  +.+++.+|+ |..|+.
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~   80 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLS   80 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHH
Confidence            334479999999999999999997  888999999 555555

>PLN02476 O-methyltransferase

Probab=86.08  E-value=1.3  Score=34.74  Aligned_cols=43  Identities=9%  Similarity=-0.001  Sum_probs=34.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.++||+||.++|..++.+++.-| +-+++-+|. |+..+.|+
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar  160 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK  160 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            55679999999999999999998876 557888888 55555554

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=86.07  E-value=7.6  Score=27.68  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988           95 RNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus        95 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .++|.+.|.+.... ....++...+..  .-|+++|=|+|-.=-.+.+.+|+=+..|||+
T Consensus         4 LDsfi~RmtaQR~~-L~~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vfDR   60 (160)
T PF12692_consen    4 LDSFIRRMTAQRDC-LNWAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVFDR   60 (160)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence            56788888664332 334555555233  5899999999999999999999999999997

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=85.87  E-value=1.2  Score=37.76  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++.-..++||-||+|.+++++++.  -.+++.+.+ |+.++.|+
T Consensus       381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~  422 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAE  422 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhh
Confidence            666699999999999999999886  455655544 77777666

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=85.80  E-value=1.5  Score=33.12  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .....+|++.|||.|..+..|+++  +.+++.+|+ |..|+.+
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~   75 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQA   75 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHH
Confidence            455679999999999999999997  789999999 5566554

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.80  E-value=2.1  Score=33.65  Aligned_cols=42  Identities=14%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+++.-+ ......|+.||.|+|.+...++++  ..+++.++.
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~   88 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEI   88 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEec
Confidence            456777788 888899999999999999999998  445544443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=85.52  E-value=1.6  Score=35.14  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIR-GINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-P~vi~~a  161 (168)
                      ...+|||+|||.|..+.-..++  +++ .+..|. +..|++|
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea  101 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEA  101 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHH
Confidence            5689999999999988888876  444 577887 3455544

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=84.63  E-value=5.4  Score=29.15  Aligned_cols=36  Identities=14%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH
Q 030988          107 ALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSK  143 (168)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~  143 (168)
                      ...+..+++..+ |++..-|+.+|-|+|-+..+++++
T Consensus        34 s~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~   69 (194)
T COG3963          34 SILARKMASVID-PESGLPVLELGPGTGVITKAILSR   69 (194)
T ss_pred             HHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhc
Confidence            345667788888 999889999999999999998875

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=83.70  E-value=6.7  Score=31.34  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEccc
Q 030988          123 INQLVDVAGGLGANISLLVSKY--------------------PQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~--------------------P~l~~~v~Dl  154 (168)
                      ..+||-||||.|.=..+++..+                    |.+..+++|.
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDi  138 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDI  138 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEe
Confidence            3699999999997555555544                    3367788886

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=83.36  E-value=2.3  Score=30.97  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=34.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR---------GINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~---------~~v~Dl-P~vi~~a  161 (168)
                      .++.... |.....|+|-=||+|.++++.+...++..         .+..|. |..++.+
T Consensus        19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a   77 (179)
T PF01170_consen   19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGA   77 (179)
T ss_dssp             HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHH
T ss_pred             HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHH
Confidence            4555556 77778999999999999999888888877         778886 5555543

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=83.34  E-value=0.88  Score=38.78  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEccc-hHHHh
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQ--------IRGINFDL-PHVIK  159 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~--------l~~~v~Dl-P~vi~  159 (168)
                      ...+|+|.+||+|.++.+++++.+.        +..+.+|. |..++
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~   77 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK   77 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence            4569999999999999999988763        44577776 44443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=83.01  E-value=1.8  Score=33.65  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=28.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      ...+++|||.|.|.....++..+.++.+|=.-.|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~  127 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP  127 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH
Confidence            3578999999999999999999998776654443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=82.73  E-value=2.2  Score=31.75  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      ....+|+|+-||.|.+++.+++..+..+++..|+ |..++
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~  139 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE  139 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence            4457999999999999999999888888999998 55554

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=81.57  E-value=2.2  Score=34.93  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHC---CCCeEEEccchH
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGA----NISLLVSKY---PQIRGINFDLPH  156 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~---P~l~~~v~DlP~  156 (168)
                      +.|++++. -+...+|||+|-|.|.    +..+|+++.   |.++.|.++.|.
T Consensus       100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~  151 (374)
T PF03514_consen  100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPN  151 (374)
T ss_pred             HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCC
Confidence            46888887 5677899999999994    666777764   889999999964

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=81.31  E-value=2.4  Score=34.60  Aligned_cols=41  Identities=17%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeE-EEccc
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRG-INFDL  154 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~-~v~Dl  154 (168)
                      +-...++|+. ++|+|||-|+|.-+.+.-.-+|+++. +++..
T Consensus       105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~  146 (484)
T COG5459         105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEA  146 (484)
T ss_pred             HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhcc
Confidence            3334443544 57999999999999999999999974 66664

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=80.94  E-value=6.5  Score=30.79  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=34.1

Q ss_pred             chhHHhHhcHHHHHHHHHHHHHhhH----HHHHHHHHHcCCCCCCCeEEEecCCccHHHH
Q 030988           83 NPFEYAMKAARRRNLFNQSMHNHAA----LVMKKILEIYKGFEEINQLVDVAGGLGANIS  138 (168)
Q Consensus        83 ~~~e~~~~~p~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~  138 (168)
                      .-+..+.++|..-..|+++....-.    ...+.+++.+..-+....|-|+|||.+.++.
T Consensus       137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~  196 (325)
T KOG3045|consen  137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS  196 (325)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence            3455566788766666665443221    1223455555412345789999999999886

>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit

Probab=80.16  E-value=4.7  Score=27.22  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=35.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCe-EEEccchHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIR-GINFDLPHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~-~~v~DlP~vi~~a~  162 (168)
                      .+++.++.-.+.-.++|+-||+-. .+..+...++++. .+..++|-+++...
T Consensus        49 ~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~~  101 (122)
T cd00006          49 AALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAAR  101 (122)
T ss_pred             HHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHHH
Confidence            344555524567889999555554 5666666668876 48999999988654

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		9e-49
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		2e-43
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		4e-43
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		6e-33
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		4e-29
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		2e-05
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		4e-05
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		2e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  189 bits (479), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 1/168 (0%)
Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLA    LTC++ T +DG V R+YGLA+V +YL+ NEDGVS++ + L++Q+ V ++ 
Sbjct: 80  MLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMES 139
Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WYHLKD +L+G +PF KA+     FEY     R   +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  LVDV GG GA I+ +VSKYP I+GINFDLPHVI+DAPSY G+ 
Sbjct: 199 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVE 246

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S +T  L     G V R+YGLA V ++L  NEDGVSLAP  LL+ + V ++P
Sbjct: 83  VLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEP 142
Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W++LKD +LEG +PF KA+   N F+Y     R   +FN+ M +++ + MKKILE+Y GF
Sbjct: 143 WFYLKDAILEGGIPFNKAYGM-NIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGF 201
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E +  +VDV GG GA  S++V+KYP I  INFDLPHVI+DAP++ G+ 
Sbjct: 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVE 249

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS + +TC +   KDG + R YG A V ++L PNEDGVS+A + L++Q+ V ++ 
Sbjct: 81  ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 140
Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +L+G +PF KA+   + FEY     R   +FN+ M NH+ ++ KK+LE+Y GF
Sbjct: 141 WYYLKDAVLDGGIPFNKAYG-MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF 199
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E +  LVDV GG+GA ++ + + YP I+G+NFDLPHVI +AP + G+
Sbjct: 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 101/168 (60%)
Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS S LT    T +DG   RVYGL+ VG+YL+P+E    LA           +  
Sbjct: 88  MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQV 147
Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W + K+ +++  +   K  +    +E+  K  +   +FN+SM +  A  MK++LEIY GF
Sbjct: 148 WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGF 207
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           E I+ LVDV GG G N+ L++SKYP I+GINFDLP VI++AP   GI 
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 255

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 93/163 (57%)
Query: 6   ASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLK 65
           AS S LT    T +DG   RVYGL+ VG+YL+P+E    LA           +  W + K
Sbjct: 93  ASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFK 152
Query: 66  DCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQ 125
           + +++  +   K  +    +E+  K  +   +FN+S  +  A   K+ LEIY GFE I+ 
Sbjct: 153 EAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGIST 212
Query: 126 LVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
           LVDV GG G N+ L++SKYP I+GINFDLP VI++AP   GI 
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 255

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 56/130 (43%)
Query: 31  SVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMK 90
           +V   LL     + LAP+     +      ++ LK  + E  L           +++  K
Sbjct: 97  TVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDK 156
Query: 91  AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150
                  FN +M + + L+   + +    F+ +  +VDV GG G    ++   +P+++ I
Sbjct: 157 NPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216
Query: 151 NFDLPHVIKD 160
            FD P V+++
Sbjct: 217 VFDRPQVVEN 226

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 15  LVTNKD-GNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTL 73
           ++TN++  N    Y L +V   LL     + LAP+     +      +++LK  + E  L
Sbjct: 86  IITNQELENEEEAYAL-TVASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDL 144
Query: 74  PFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALV---MKKILEIYKGFEEINQLVDVA 130
                +   + +E+  K      L+N ++ + + ++   MK    +++G E I   VDV 
Sbjct: 145 TLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESI---VDVG 201
Query: 131 GGLGANISLLVSKYPQIRGINFDLPHVIKD 160
           GG G    ++   +P++  + FD P V+++
Sbjct: 202 GGNGTTGKIICETFPKLTCVVFDRPKVVEN 231

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 54/130 (41%)
Query: 31  SVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMK 90
           +V   LL     + LAP      +      ++ LK  + E  L           +++  K
Sbjct: 97  TVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDK 156
Query: 91  AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150
                  FN +  + + L+   + +    F+ +  +VDV GG G    ++   +P+++ I
Sbjct: 157 NPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216
Query: 151 NFDLPHVIKD 160
            FD P V+++
Sbjct: 217 VFDRPQVVEN 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	2e-54
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	9e-54
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	6e-50
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	6e-47
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	3e-46
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	4e-45
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	2e-44
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	9e-44
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	2e-43
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	4e-43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	2e-37
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	1e-32
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	6e-32
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	9e-30
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	3e-29

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  175 bits (444), Expect = 2e-54
 Identities = 78/167 (46%), Positives = 117/167 (70%), Gaps = 1/167 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS + +TC +   KDG + R YG A V ++L PNEDGVS+A + L++Q+ V ++ 
Sbjct: 81  ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 140

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           WY+LKD +L+G +PF KA+   + FEY     R   +FN+ M NH+ ++ KK+LE+Y GF
Sbjct: 141 WYYLKDAVLDGGIPFNKAYG-MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF 199

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E +  LVDV GG+GA ++ + + YP I+G+NFDLPHVI +AP + G+
Sbjct: 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  173 bits (440), Expect = 9e-54
 Identities = 84/167 (50%), Positives = 116/167 (69%), Gaps = 1/167 (0%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLAS S +T  L     G V R+YGLA V ++L  NEDGVSLAP  LL+ + V ++P
Sbjct: 83  VLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEP 142

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W++LKD +LEG +PF KA+   N F+Y     R   +FN+ M +++ + MKKILE+Y GF
Sbjct: 143 WFYLKDAILEGGIPFNKAYG-MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGF 201

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E +  +VDV GG GA  S++V+KYP I  INFDLPHVI+DAP++ G+
Sbjct: 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGV 248

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  163 bits (414), Expect = 6e-50
 Identities = 73/168 (43%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           ML+LLAS S LT    T +DG   RVYGL+ VG+YL+P+E    LA           +  
Sbjct: 88  MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQV 147

Query: 61  WYHLKDCLLEGTL-PFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG 119
           W + K+ +++  +  F   H     +E+  K  +   +FN+SM +  A  MK++LEIY G
Sbjct: 148 WMNFKEAVVDEDIDLFKNVHG-VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG 206

Query: 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           FE I+ LVDV GG G N+ L++SKYP I+GINFDLP VI++AP   GI
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI 254

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  155 bits (393), Expect = 6e-47
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 9/168 (5%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +++ LA   F                Y L      L+   D   LAP+     +      
Sbjct: 74  LMRYLAHNGFFEIITKEE------ESYALTVASELLVRGSDL-CLAPMVECVLDPTLSGS 126

Query: 61  WYHLKDCLLEGTL-PFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG 119
           ++ LK  + E  L  F         +++  K       FN +M + + L+   + +    
Sbjct: 127 YHELKKWIYEEDLTLFGVTLG-SGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV 185

Query: 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           F+ +  +VDV GG G    ++   +P+++ I FD P V+++      +
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  153 bits (388), Expect = 3e-46
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 8/173 (4%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVF--RVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNV 58
            L+LL    F    +V  K+G+      Y L    + L+  +    L+ I   +    ++
Sbjct: 68  FLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKGALHPSSL 126

Query: 59  DPWYHLKDCLLEGT--LPFMKAHNAKNPFEYAMKAARRRNL--FNQSMHNHAALVMKKIL 114
           D W   K    E      F  A   ++ +++  K +    L  F  +M + + +    + 
Sbjct: 127 DMWSSSKKWFNEDKEQTLFECATG-ESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 185

Query: 115 EIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
           E  + FE +  LVDV GG G    L+   +P ++   FD P V+ +    + +
Sbjct: 186 ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 238

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  151 bits (382), Expect = 4e-45
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 8/164 (4%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +++ L     L       K G   R      +G  L         A + L    +     
Sbjct: 69  LVRHLTVVGVLEG---GEKQG---RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLA 122

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           +  L D +  G   +   +  +  +E         + F+  M     L  +   + Y  +
Sbjct: 123 FTGLLDVVRTGRPAYAGRYG-RPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W 180

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
             +  ++DV GG G  ++ +  + P +RG   +L    + A   
Sbjct: 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRR 224

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  149 bits (377), Expect = 2e-44
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 10/164 (6%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLA+            D     ++   ++   LLP+     +A          +   
Sbjct: 91  LLRLLATVGVFDD---LGHDD----LFAQNALSAVLLPD-PASPVATDARFQAAPWHWRA 142

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W  L   +  G   F  A+   + ++   +  + R LFN++M + +     ++   Y  F
Sbjct: 143 WEQLTHSVRTGEASFDVANG-TSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-F 200

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
                 VD+ GG G+ ++ ++  +P +RG   + P V ++A   
Sbjct: 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEAREL 244

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  147 bits (372), Expect = 9e-44
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 12/162 (7%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+LLA    +  +     DG     + L   G  L  +   V      L+  + +    
Sbjct: 75  VLRLLAVRDVVRES-----DG----RFALTDKGAALRSD-SPVPARAGILMFTDTMFWTM 124

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
            + +   L      F       +   Y    A    L+ + M   +A     +      F
Sbjct: 125 SHRVASALGPERPAFADIFG-SSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG-DF 182

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP 162
                + DV GG G  +  ++ ++P ++G+  D   V+    
Sbjct: 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHR 224

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  146 bits (371), Expect = 2e-43
 Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 10/164 (6%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +++ L +   L  +      G     +    VG  L  +      A   L          
Sbjct: 72  LIRHLVAIGLLEED----APG----EFVPTEVGELLADDHPAAQRAWHDLTQAVARADIS 123

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           +  L D +  G   +   +  K  +E        R  F+  +     +        Y  +
Sbjct: 124 FTRLPDAIRTGRPTYESIYG-KPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DW 181

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
             +  ++DV GG G   + +  + P +     ++   +  A SY
Sbjct: 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSY 225

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  144 bits (366), Expect = 4e-43
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+ L +    T       DG    VYGL   G  L  +        + + S        
Sbjct: 58  LLRHLVAVGLFTR------DGQ--GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLG 109

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           +  L   +  G   +   +   + +E           F+  M +H  L    I   Y  +
Sbjct: 110 FVELAHSIRTGQPAYPVRYG-TSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-W 167

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
             +  +VDV GG G  +S L++ +  + G   DL      A   
Sbjct: 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRR 211

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  130 bits (328), Expect = 2e-37
 Identities = 33/164 (20%), Positives = 50/164 (30%), Gaps = 15/164 (9%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +++LL +            D      Y        L   E   S   + L   E      
Sbjct: 61  LMRLLVAFEIFQG------DTR--DGYANTPTSHLLRDVEG--SFRDMVLFYGEEF-HAA 109

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W    + LL GT  F  A   ++ + Y  +       F  +M     L   +I  +   F
Sbjct: 110 WTPACEALLSGTPGFELAFG-EDFYSYLKRCPDAGRRFLLAMKASN-LAFHEIPRLL-DF 166

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
                 VDV GG G     ++   P  RG+  D    +  A   
Sbjct: 167 R-GRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDN 209

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  117 bits (295), Expect = 1e-32
 Identities = 22/165 (13%), Positives = 45/165 (27%), Gaps = 17/165 (10%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +   L    F+T      K       Y L S     L  +    +          +  + 
Sbjct: 59  LCDYLVIIGFMT------KQA---EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNG 109

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYK-G 119
           +  L   +L+G           +              F ++M    A   + I ++    
Sbjct: 110 FNDLTAAVLKGGTAI-------SSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN 162

Query: 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
             E  +++D++   G     +    P       D   V++ A   
Sbjct: 163 KIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKEN 207

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  116 bits (292), Expect = 6e-32
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLL-PNEDGVSLAPIFLLSQENVNVD 59
           +L+ L     +       +DG     + L     Y+  P     +L    +        D
Sbjct: 84  LLETLRQMRVINL-----EDG----KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLAD 134

Query: 60  P-WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYK 118
             +  L   +           N K    Y          F +   ++A   ++ +LE  K
Sbjct: 135 DFYMGLSQAVRGQK-------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK 187

Query: 119 GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQG 166
             + + +++DV GG+G   + ++  +P++     +LP  I        
Sbjct: 188 -LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA 234

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  110 bits (276), Expect = 9e-30
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L  LA+   LT      K+G+    +   ++    L       + PI       +  D 
Sbjct: 76  LLHALAALGLLT------KEGDA---FRNTALTERYLTTTSADYIGPIVEHQ--YLQWDN 124

Query: 61  WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
           W  L + L        +               R R+ FN +M   +  ++  + E+   F
Sbjct: 125 WPRLGEILRSEKPLAFQQ------ESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG-VF 177

Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
                ++D+AGG G  ++ ++ ++PQ+ G  +DLP     A   
Sbjct: 178 ARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKT 221

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  109 bits (274), Expect = 3e-29
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
           +L+   +   +       ++      Y LA  G +LL +     +A + +    +VN   
Sbjct: 70  LLEASLTIGTILL-----EEDR----YVLAKAGWFLLND----KMARVNMEFNHDVNYQG 116

Query: 61  WYHLKDCLLEGTLPFMKAH-NAKNPFEYAMK-AARRRNLFNQSMHNHAALVMKKILEIYK 118
            +HL++ LL G    +K        +E   +   + +  +    H ++     K LEI  
Sbjct: 117 LFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIV- 175

Query: 119 GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
                 +L+D+ G  G   +  V    ++     DLP  ++     
Sbjct: 176 FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQ 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.95
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.95
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.95
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.93
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.92
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.92
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.92
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.92
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.92
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.91
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.87
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.87
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.86
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.82
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.82
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.82
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.16
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.08
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.98
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.92
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.87
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.84
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.83
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.81
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	97.77
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.77
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.77
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.76
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.75
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.75
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.75
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.74
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.71
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.71
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.69
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.67
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.65
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.64
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.64
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.63
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.63
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.62
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.61
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.61
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.6
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.59
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.59
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.55
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.54
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.5
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.5
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.5
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.49
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.49
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.48
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.48
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.48
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.48
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.48
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.48
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.48
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.47
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.46
1xxl_A	239	YCGJ protein; structural genomics, protein structu	97.45
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.45
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	97.45
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.44
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.44
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.43
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.43
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.43
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.42
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.42
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.42
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.41
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.41
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.41
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.39
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.39
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.38
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.36
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.36
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.36
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.35
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.35
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.34
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.33
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.33
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.32
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.32
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.3
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.29
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.29
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.28
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.28
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.28
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.28
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.27
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.26
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.24
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.24
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.24
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.23
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.22
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.21
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.21
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.2
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.2
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.19
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.19
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.19
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.19
2o07_A	304	Spermidine synthase; structural genomics, structur	97.19
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.18
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.18
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.18
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.18
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.17
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.17
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.17
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.17
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.16
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.15
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.14
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.14
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.14
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.14
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.13
3ocj_A	305	Putative exported protein; structural genomics, PS	97.12
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.12
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.1
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.1
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.09
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.08
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.07
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.07
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.06
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.05
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.05
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.04
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.03
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.03
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.02
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.0
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.0
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.0
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.98
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.97
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	96.97
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.96
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.96
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.95
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.94
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.94
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.93
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.93
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.93
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.92
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.92
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	96.91
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	96.91
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.9
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.89
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.89
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.88
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	96.88
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.86
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.85
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.84
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.84
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.84
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.83
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.81
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.81
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.8
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.79
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.79
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.79
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.78
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.77
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.77
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	96.76
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.74
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.73
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.72
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	96.71
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.71
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.7
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.7
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	96.68
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.66
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.66
2frn_A	278	Hypothetical protein PH0793; structural genomics,	96.66
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	96.65
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.61
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.6
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.6
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.59
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.57
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	96.57
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	96.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.46
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	96.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.36
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.36
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.34
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.33
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.25
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	96.24
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.23
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.21
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	96.21
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.19
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	96.13
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.12
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.11
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.09
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.07
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	95.91
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.9
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	95.85
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	95.84
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	95.79
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	95.77
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.71
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	95.7
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	95.64
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.61
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	95.53
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.48
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.34
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	95.23
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.18
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.1
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.1
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.01
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	94.97
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.87
3sso_A	419	Methyltransferase; macrolide, natural product, ros	94.64
3k6r_A	278	Putative transferase PH0793; structural genomics,	94.61
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.61
3ll7_A	410	Putative methyltransferase; methytransferase, stru	94.56
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.5
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.46
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	94.32
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	94.28
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	94.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.25
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.22
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	94.19
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	94.17
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	94.15
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	94.14
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	94.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.83
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.69
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	93.46
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	93.37
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.34
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.12
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	93.05
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	92.29
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	91.95
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	91.45
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	90.97
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	90.86
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	90.85
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	90.83
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	90.78
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	90.0
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.5
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	88.89
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	88.8
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	88.06
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	88.05
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	87.89
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	87.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	87.63
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	86.93
3khk_A	544	Type I restriction-modification system methylation	84.67
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	83.16
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	82.71
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	82.54
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	80.78

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.95  E-value=3.6e-28  Score=194.47  Aligned_cols=166  Identities=47%  Similarity=0.900  Sum_probs=142.2

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||+|+++|+|++....+++|..+++|++|+.++.|+.++.+.++.+++.+...+.+++.|.+|.+++|+|+++|+..+|
T Consensus        81 lLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g  160 (364)
T 3p9c_A           81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG  160 (364)
T ss_dssp             HHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHS
T ss_pred             HHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcC
Confidence            58999999999985210001111378999999999887654458999887765667789999999999999999999999


Q ss_pred             CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                       .++|+|+.++|+..+.|+++|...+....+.+++.++.++...+|||||||+|.++..+++++|+++++++|+|++++.
T Consensus       161 -~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  239 (364)
T 3p9c_A          161 -MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE  239 (364)
T ss_dssp             -SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred             -CCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence             8999999999999999999999988887788999997688889999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 030988          161 APSYQGI  167 (168)
Q Consensus       161 a~~~~~~  167 (168)
                      ++..++|
T Consensus       240 a~~~~~v  246 (364)
T 3p9c_A          240 APQFPGV  246 (364)
T ss_dssp             CCCCTTE
T ss_pred             hhhcCCe
Confidence            9876544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.95  E-value=1.9e-28  Score=195.38  Aligned_cols=154  Identities=19%  Similarity=0.298  Sum_probs=134.9

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhcccc-CCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYL-LPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~   79 (168)
                      +||+|+++|+|++....+     +++|++|+.++.| .++++ .++.+++.+. .+..++.|.+|.+++++|+++|...+
T Consensus        63 lLr~L~~~gll~~~~~~~-----~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~  135 (353)
T 4a6d_A           63 LLDICVSLKLLKVETRGG-----KAFYRNTELSSDYLTTVSP-TSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETF  135 (353)
T ss_dssp             HHHHHHHTTSEEEEEETT-----EEEEEECHHHHHHHSTTST-TCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHCCCEEEeccCc-----cceeeCCHHHHHHhhcCCc-hHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhc
Confidence            589999999998752111     5689999999875 44444 5888888765 45678899999999999999999988


Q ss_pred             C--CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988           80 N--AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus        80 g--~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                      |  ..++|+++.++|+....|+++|...+...++.+++.|+ |+...+|||||||+|.++++++++||+++++++|+|+|
T Consensus       136 g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v  214 (353)
T 4a6d_A          136 GVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEV  214 (353)
T ss_dssp             SCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHH
T ss_pred             CCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHH
Confidence            8  46899999999999999999999998888889999999 99999999999999999999999999999999999999


Q ss_pred             HhhCC
Q 030988          158 IKDAP  162 (168)
Q Consensus       158 i~~a~  162 (168)
                      ++.++
T Consensus       215 ~~~a~  219 (353)
T 4a6d_A          215 VWTAK  219 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.95  E-value=8.4e-28  Score=192.57  Aligned_cols=166  Identities=51%  Similarity=0.884  Sum_probs=141.4

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||+|+++|+|++....+++|..+++|++|+.++.|+.+..+.++++++.+..++.++..|.+|.+++|+|+++|+..+|
T Consensus        83 lLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g  162 (368)
T 3reo_A           83 VLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYG  162 (368)
T ss_dssp             HHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSS
T ss_pred             HHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhC
Confidence            58999999999985110001111378999999999886654458999887765667788999999999999999999999


Q ss_pred             CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                       .++|+|+.++|+..+.|+++|...+....+.+++.++.|+...+|||||||+|.++..+++++|+++++++|+|++++.
T Consensus       163 -~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  241 (368)
T 3reo_A          163 -MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQD  241 (368)
T ss_dssp             -SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred             -CCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHh
Confidence             9999999999999999999999988887788888887678889999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 030988          161 APSYQGI  167 (168)
Q Consensus       161 a~~~~~~  167 (168)
                      ++..++|
T Consensus       242 a~~~~~v  248 (368)
T 3reo_A          242 APAFSGV  248 (368)
T ss_dssp             CCCCTTE
T ss_pred             hhhcCCC
Confidence            9876544

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.93  E-value=5.3e-26  Score=180.69  Aligned_cols=148  Identities=18%  Similarity=0.198  Sum_probs=134.1

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||+|+++|+|++.         +++|++|+.++.|+++++ .++.+++.+..++..++.|.+|++++|+|+++|+..+|
T Consensus        75 lLr~l~~~g~l~~~---------~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g  144 (348)
T 3lst_A           75 VLRLLAVRDVVRES---------DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFG  144 (348)
T ss_dssp             HHHHHHHTTSEEEE---------TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHS
T ss_pred             HHHHHHhCCCEEec---------CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhC
Confidence            58999999999994         789999999999977654 47888887654555678999999999999999999999


Q ss_pred             CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                       .++|+|+.++|+..+.|.++|...+....+.+++.++ |+...+|||||||+|.++..+++++|+++++++|+|+++..
T Consensus       145 -~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  222 (348)
T 3lst_A          145 -SSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVAR  222 (348)
T ss_dssp             -SCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTT
T ss_pred             -CCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhc
Confidence             7899999999999999999999988877788999999 99999999999999999999999999999999999999883

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.92  E-value=2.1e-25  Score=177.44  Aligned_cols=156  Identities=21%  Similarity=0.383  Sum_probs=136.2

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHh-cCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLL-EGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~   79 (168)
                      +||+|+++|+|++.+ .+     +++|++|+.++.|+++.+ .++.+++.+..++..++.|.+|+++++ +|+++|+..+
T Consensus        74 lLr~L~~~gll~~~~-~~-----~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~  146 (352)
T 1fp2_A           74 LMRYLAHNGFFEIIT-KE-----EESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL  146 (352)
T ss_dssp             HHHHHHHTTSEEEEE-SS-----SEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHhCCeEEEec-CC-----CCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHc
Confidence            489999999999851 01     589999999998887655 478898877655566789999999999 8999999989


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHc--CCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIY--KGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                      | .++|+++.++|+..+.|+++|...+....+. ++.|  + ++...+|||||||+|.++..+++++|+++++++|+|.+
T Consensus       147 g-~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~  223 (352)
T 1fp2_A          147 G-SGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV  223 (352)
T ss_dssp             S-SCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             C-CCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHH
Confidence            8 8999999999999999999999988776667 8888  5 88889999999999999999999999999999999999


Q ss_pred             HhhCCCCCC
Q 030988          158 IKDAPSYQG  166 (168)
Q Consensus       158 i~~a~~~~~  166 (168)
                      ++.++..++
T Consensus       224 ~~~a~~~~~  232 (352)
T 1fp2_A          224 VENLSGSNN  232 (352)
T ss_dssp             HTTCCCBTT
T ss_pred             HhhcccCCC
Confidence            999887554

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.92  E-value=1.6e-25  Score=179.26  Aligned_cols=151  Identities=21%  Similarity=0.373  Sum_probs=135.9

Q ss_pred             CccccccCCcccceeecCCCCccccc-eecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRV-YGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~-y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~   79 (168)
                      +||+|+++|+|++.    +    +++ |++|+.++.|.++.+ .++.+++.+...+..++.|.+|.+++++|+++|...+
T Consensus        91 lLr~L~~~g~l~~~----~----~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~  161 (369)
T 3gwz_A           91 LLRLLATVGVFDDL----G----HDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN  161 (369)
T ss_dssp             HHHHHHHTTSSEEC----S----STTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHH
T ss_pred             HHHHHHhCCCEEEe----C----CCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhc
Confidence            58999999999995    2    678 999999999876654 4788888776454567899999999999999999999


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      | .++|+|+.++|+..+.|+++|...+....+.+++.++ ++...+|||||||+|.++..+++++|+++++++|+|.+++
T Consensus       162 g-~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~  239 (369)
T 3gwz_A          162 G-TSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAE  239 (369)
T ss_dssp             S-SCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred             C-CCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHH
Confidence            8 7899999999999999999999998888889999999 9999999999999999999999999999999999999998


Q ss_pred             hCC
Q 030988          160 DAP  162 (168)
Q Consensus       160 ~a~  162 (168)
                      .++
T Consensus       240 ~a~  242 (369)
T 3gwz_A          240 EAR  242 (369)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.92  E-value=1.3e-25  Score=177.20  Aligned_cols=151  Identities=20%  Similarity=0.256  Sum_probs=133.7

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCcccc-ccCCcchHHHhcCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNV-DPWYHLKDCLLEGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~   79 (168)
                      +||+|+++|++++.    +    +++|++|+.++.|..+.+ .++.+++.+...+..+ +.|.+|.+++++|+++|+..+
T Consensus        58 lLr~l~~~gl~~~~----~----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  128 (332)
T 3i53_A           58 LLRHLVAVGLFTRD----G----QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRY  128 (332)
T ss_dssp             HHHHHHHTTSEEEC----T----TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHH
T ss_pred             HHHHHHhCCcEEec----C----CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhh
Confidence            58999999999986    2    789999999999976654 4788888765333445 789999999999999999999


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      | .++|+++.++|+..+.|.++|...+....+.+++.++ |+...+|||||||+|.++..+++++|+++++++|+|.+++
T Consensus       129 g-~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~  206 (332)
T 3i53_A          129 G-TSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS  206 (332)
T ss_dssp             S-SCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred             C-CCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHH
Confidence            8 7899999999999999999999988877778888898 9888999999999999999999999999999999999998


Q ss_pred             hCC
Q 030988          160 DAP  162 (168)
Q Consensus       160 ~a~  162 (168)
                      .++
T Consensus       207 ~a~  209 (332)
T 3i53_A          207 AAH  209 (332)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.92  E-value=2.2e-25  Score=177.70  Aligned_cols=163  Identities=22%  Similarity=0.401  Sum_probs=136.4

Q ss_pred             CccccccCCcccceeec-CC-CCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcC--CchhH
Q 030988            1 MLQLLASCSFLTCNLVT-NK-DGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEG--TLPFM   76 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~-~~-~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g--~~~~~   76 (168)
                      +||+|+++|+|++.... ++ +|..+++|++|+.++.|+++++ .++.+++.+..++.+++.|.+|++++|+|  .++|+
T Consensus        68 lLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~  146 (358)
T 1zg3_A           68 FLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFE  146 (358)
T ss_dssp             HHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHH
T ss_pred             HHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHH
Confidence            48999999999985100 00 0101379999999998887765 47899988765566788999999999999  78899


Q ss_pred             hhcCCCchhHHhHhcHHHHH--HHHHHHHHhhHHHHHHHHHHc--CCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEc
Q 030988           77 KAHNAKNPFEYAMKAARRRN--LFNQSMHNHAALVMKKILEIY--KGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF  152 (168)
Q Consensus        77 ~~~g~~~~~e~~~~~p~~~~--~f~~~m~~~~~~~~~~~~~~~--~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~  152 (168)
                      ..+| .++|+++.++|+..+  .|+++|...+.... .+++.|  + |+...+|||||||+|.++..+++++|+++++++
T Consensus       147 ~~~g-~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~  223 (358)
T 1zg3_A          147 CATG-ESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF  223 (358)
T ss_dssp             HHHS-SCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEE
T ss_pred             HHhC-CCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEe
Confidence            8888 889999999999999  99999999877666 788888  5 788899999999999999999999999999999


Q ss_pred             cchHHHhhCCCCCCC
Q 030988          153 DLPHVIKDAPSYQGI  167 (168)
Q Consensus       153 DlP~vi~~a~~~~~~  167 (168)
                      |+|.+++.++..++|
T Consensus       224 D~~~~~~~a~~~~~v  238 (358)
T 1zg3_A          224 DQPQVVGNLTGNENL  238 (358)
T ss_dssp             ECHHHHSSCCCCSSE
T ss_pred             ccHHHHhhcccCCCc
Confidence            999999998875543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.92  E-value=3.9e-25  Score=177.12  Aligned_cols=166  Identities=44%  Similarity=0.723  Sum_probs=125.9

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcC-CchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEG-TLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g-~~~~~~~~   79 (168)
                      +||+|+++|+|++....+++|..+++|++|+.++.|+++++..++++++.+..++.+++.|.+|++++++| +++|+..+
T Consensus        88 lLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~  167 (372)
T 1fp1_D           88 MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH  167 (372)
T ss_dssp             HHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------
T ss_pred             HHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh
Confidence            58999999999985100000100259999999998887654237888887765556678999999999999 88999888


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      | .++|+++.++|+..+.|+++|...+....+.+++.++.++...+|||||||+|.++..+++++|+++++++|+|.+++
T Consensus       168 g-~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~  246 (372)
T 1fp1_D          168 G-VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE  246 (372)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred             C-CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHH
Confidence            8 889999999999999999999998887778899999658888999999999999999999999999999999999999


Q ss_pred             hCCCCCCC
Q 030988          160 DAPSYQGI  167 (168)
Q Consensus       160 ~a~~~~~~  167 (168)
                      .++..++|
T Consensus       247 ~a~~~~~v  254 (372)
T 1fp1_D          247 NAPPLSGI  254 (372)
T ss_dssp             TCCCCTTE
T ss_pred             hhhhcCCC
Confidence            99876543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.91  E-value=2.8e-24  Score=169.50  Aligned_cols=147  Identities=21%  Similarity=0.341  Sum_probs=130.5

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||+|+++|+|++.    +    +++|++|+.++.|+ +++ .++.+++.+..++. ++.|.+|++++++|+++|+..+|
T Consensus        61 ~Lr~L~~~g~l~~~----~----~~~y~~t~~s~~l~-~~~-~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~g  129 (334)
T 2ip2_A           61 LMRLLVAFEIFQGD----T----RDGYANTPTSHLLR-DVE-GSFRDMVLFYGEEF-HAAWTPACEALLSGTPGFELAFG  129 (334)
T ss_dssp             HHHHHHHTTSEEEE----T----TTEEEECHHHHTTS-SST-TCSHHHHHHHTTHH-HHHTTTHHHHHHHCCCHHHHHHS
T ss_pred             HHHHHHhCCceEec----C----CCeEecCHHHHHHh-CCC-ccHHHHHHHhcCch-hhHHHHHHHHHhcCCChhhhhcC
Confidence            48999999999986    2    68999999999888 544 47888887764443 38999999999999999998888


Q ss_pred             CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                       .++|+++.++|+..+.|+++| ..+....+.+++.++ +++ .+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus       130 -~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  205 (334)
T 2ip2_A          130 -EDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGV  205 (334)
T ss_dssp             -SCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHH
T ss_pred             -CCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHH
Confidence             889999999999999999999 888777788999998 988 9999999999999999999999999999999988876


Q ss_pred             CC
Q 030988          161 AP  162 (168)
Q Consensus       161 a~  162 (168)
                      ++
T Consensus       206 a~  207 (334)
T 2ip2_A          206 AR  207 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.87  E-value=6.5e-23  Score=163.83  Aligned_cols=151  Identities=15%  Similarity=0.222  Sum_probs=131.4

Q ss_pred             CccccccCCcccceeecCCCCcccc--ceecchhccccCCCCCCCChHHHHHhhcCcccc-ccCCcchHHHhcCCchhHh
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFR--VYGLASVGRYLLPNEDGVSLAPIFLLSQENVNV-DPWYHLKDCLLEGTLPFMK   77 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~--~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~   77 (168)
                      +||+|++.|+|++.    +    ++  +|++|+.++.|+.+.+ .++..++.+...+..+ ..|.+|.+++++|+++|+.
T Consensus        69 ~Lr~L~~~Gll~~~----~----~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  139 (374)
T 1qzz_A           69 LVRHLTVVGVLEGG----E----KQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAG  139 (374)
T ss_dssp             HHHHHHHTTSEECC----C----C-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHH
T ss_pred             HHHHHhhCCCEEEe----C----CCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhh
Confidence            48999999999985    1    56  9999999988887655 4788888765333456 7999999999999999998


Q ss_pred             hcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988           78 AHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus        78 ~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                      .+| .++|+++.++|+..+.|+++|........+.+++.++ ++...+|||||||+|.++..+++++|+++++.+|+|.+
T Consensus       140 ~~g-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~  217 (374)
T 1qzz_A          140 RYG-RPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGP  217 (374)
T ss_dssp             HHS-SCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             hhC-CCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHH
Confidence            888 8999999999999999999999877666678899998 88889999999999999999999999999999999988


Q ss_pred             HhhCC
Q 030988          158 IKDAP  162 (168)
Q Consensus       158 i~~a~  162 (168)
                      ++.++
T Consensus       218 ~~~a~  222 (374)
T 1qzz_A          218 AERAR  222 (374)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.87  E-value=1.2e-22  Score=161.67  Aligned_cols=151  Identities=15%  Similarity=0.237  Sum_probs=132.2

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCcc-ccccCCcchHHHhcCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENV-NVDPWYHLKDCLLEGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~g~~~~~~~~   79 (168)
                      +||+|++.|+|++.    +    +++|++|+.++.|+.+.+ .++..++.+...+. .+..|.+|.+++++|+++|+..+
T Consensus        72 ~L~~L~~~g~~~~~----~----~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~  142 (360)
T 1tw3_A           72 LIRHLVAIGLLEED----A----PGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY  142 (360)
T ss_dssp             HHHHHHHTTSEEEE----E----TTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHCCCEEec----C----CCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhc
Confidence            48999999999985    1    789999999998887755 47888887653332 57899999999999999998888


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      | .++|+++..+|+....|.++|...+....+.+++.++ ++...+|||||||+|.++..+++++|+++++.+|+|.+++
T Consensus       143 g-~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~  220 (360)
T 1tw3_A          143 G-KPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD  220 (360)
T ss_dssp             S-SCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHH
T ss_pred             C-CCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHH
Confidence            8 8999999999999999999999877766678899998 8888999999999999999999999999999999998888


Q ss_pred             hCC
Q 030988          160 DAP  162 (168)
Q Consensus       160 ~a~  162 (168)
                      .++
T Consensus       221 ~a~  223 (360)
T 1tw3_A          221 TAR  223 (360)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.86  E-value=7.3e-23  Score=163.51  Aligned_cols=145  Identities=20%  Similarity=0.240  Sum_probs=117.3

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN   80 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g   80 (168)
                      +||+|+++|+|++.         +++|++|+.++.|+++.+   ...++.+. .+..++.|.+|++++|+|++++...+|
T Consensus        70 lLr~l~~~g~l~~~---------~~~y~~t~~s~~L~~~~~---~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g  136 (363)
T 3dp7_A           70 LLEASLTIGTILLE---------EDRYVLAKAGWFLLNDKM---ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFG  136 (363)
T ss_dssp             HHHHHHHHTSEEEE---------TTEEEECHHHHHHHHCHH---HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTC
T ss_pred             HHHHHhhCCCeEec---------CCEEecccchHHhhCCCc---ccchheee-cHHhhhhHHHHHHHHhcCCCccccccC
Confidence            58999999999884         789999999988886542   23333333 456788999999999999998888888


Q ss_pred             -CCchhHHhHhcHHHHH----HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988           81 -AKNPFEYAMKAARRRN----LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus        81 -~~~~~e~~~~~p~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                       +.++|+++.++|+..+    .|+++|.....   ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~  212 (363)
T 3dp7_A          137 EWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP  212 (363)
T ss_dssp             CCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECH
T ss_pred             chHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCH
Confidence             6799999999998776    37777765432   23445544 467789999999999999999999999999999999


Q ss_pred             HHHhhCC
Q 030988          156 HVIKDAP  162 (168)
Q Consensus       156 ~vi~~a~  162 (168)
                      .+++.++
T Consensus       213 ~~~~~a~  219 (363)
T 3dp7_A          213 QQLEMMR  219 (363)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998776

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.82  E-value=9.1e-21  Score=149.11  Aligned_cols=144  Identities=15%  Similarity=0.112  Sum_probs=123.8

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhc-cccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhc
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVG-RYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAH   79 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~   79 (168)
                      +||+|++.|+|++.         +++|++|+.+ +.|..+++ .++.+++.+...+..++.|.+|.+++++|+++|+   
T Consensus        59 ~L~~L~~~g~l~~~---------~~~y~~t~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---  125 (335)
T 2r3s_A           59 LCDYLVIIGFMTKQ---------AEGYRLTSDSAMFLDRQSK-FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS---  125 (335)
T ss_dssp             HHHHHHHTTSEEEE---------TTEEEECHHHHHHTCTTST-TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST---
T ss_pred             HHHHHHhcCCeEec---------CCEEecCHHHHHHhccCCc-HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC---
Confidence            48999999999874         7899999999 56776554 4788888776444678899999999999887653   


Q ss_pred             CCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCC--CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988           80 NAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF--EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus        80 g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                         + |+++.++|+....|.+.|..........+++.++ +  ....+|||||||+|.++..+++++|+.+++.+|++.+
T Consensus       126 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~  200 (335)
T 2r3s_A          126 ---S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASV  200 (335)
T ss_dssp             ---T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             ---C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHH
Confidence               3 8888889999999999999988887788999998 8  8889999999999999999999999999999999988


Q ss_pred             HhhCC
Q 030988          158 IKDAP  162 (168)
Q Consensus       158 i~~a~  162 (168)
                      ++.++
T Consensus       201 ~~~a~  205 (335)
T 2r3s_A          201 LEVAK  205 (335)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.82  E-value=4.4e-21  Score=152.73  Aligned_cols=140  Identities=17%  Similarity=0.329  Sum_probs=118.0

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhcc-ccCCCCCC--CChHHHHHhhcCccccccCCcchHHHhcCCchhHh
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGR-YLLPNEDG--VSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMK   77 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~-~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~   77 (168)
                      +||+|++.|+|++.         +++|++|+.+. .|.++.+.  .++.+++.+. .+..++.|.+|++++++|++    
T Consensus        84 lLr~L~~~gll~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----  149 (359)
T 1x19_A           84 LLETLRQMRVINLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----  149 (359)
T ss_dssp             HHHHHHHTTSEEEE---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----
T ss_pred             HHHHHHhCCCeEee---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----
Confidence            48999999999995         56999999755 56555430  3788887765 35668899999999987654    


Q ss_pred             hcCCCchhHHhHhcHH---HHHHHHHHHHHhhH-HHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988           78 AHNAKNPFEYAMKAAR---RRNLFNQSMHNHAA-LVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus        78 ~~g~~~~~e~~~~~p~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                             |+++.++|+   ..+.|.++|...+. ...+.+++.++ ++...+|||||||+|.++..+++++|+++++++|
T Consensus       150 -------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D  221 (359)
T 1x19_A          150 -------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN  221 (359)
T ss_dssp             -------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEE
T ss_pred             -------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEe
Confidence                   566777888   88999999999887 77788999999 9888999999999999999999999999999999


Q ss_pred             chHHHhhCC
Q 030988          154 LPHVIKDAP  162 (168)
Q Consensus       154 lP~vi~~a~  162 (168)
                      +|.+++.++
T Consensus       222 ~~~~~~~a~  230 (359)
T 1x19_A          222 LPGAIDLVN  230 (359)
T ss_dssp             CGGGHHHHH
T ss_pred             cHHHHHHHH
Confidence            999988765

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.82  E-value=2.6e-20  Score=147.68  Aligned_cols=141  Identities=21%  Similarity=0.307  Sum_probs=113.9

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhcccc-CCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCch-hHhh
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYL-LPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLP-FMKA   78 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~   78 (168)
                      +||+|+++|+|++.         +++|++|+.++.+ .++.+ .++..++.+.  ...++.|.+|++++++|++. |+. 
T Consensus        76 lLr~L~~~gll~~~---------~~~y~~t~~s~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~-  142 (352)
T 3mcz_A           76 LLHALAALGLLTKE---------GDAFRNTALTERYLTTTSA-DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ-  142 (352)
T ss_dssp             HHHHHHHTTSEEEE---------TTEEEECHHHHHHHSTTCT-TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH-
T ss_pred             HHHHHHHCCCeEec---------CCeeecCHHHHhhccCCCh-hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc-
Confidence            58999999999995         6789999999864 44443 5788877654  35688999999999998764 221 


Q ss_pred             cCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC-CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988           79 HNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEE-INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus        79 ~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                            ..++.++|+..+.|.++|...... ...+++.++ ++. ..+|||||||+|.++..+++++|+++++++|+|.+
T Consensus       143 ------~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~  214 (352)
T 3mcz_A          143 ------ESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT  214 (352)
T ss_dssp             ------HHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGG
T ss_pred             ------ccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHH
Confidence                  122357899999999999884332 237888898 887 89999999999999999999999999999999998


Q ss_pred             HhhCC
Q 030988          158 IKDAP  162 (168)
Q Consensus       158 i~~a~  162 (168)
                      ++.++
T Consensus       215 ~~~a~  219 (352)
T 3mcz_A          215 RDAAR  219 (352)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87665

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.16  E-value=8.1e-06  Score=62.39  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=37.2

Q ss_pred             CCCCeEEEecCCc---cHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGL---GANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~---G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+   |.++..+.+.+|+.+++.+|+ |.+++.++
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar  121 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGR  121 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHH
Confidence            3557999999999   999888889999999999999 88888765

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.08  E-value=2.3e-06  Score=62.66  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..+++..|  +++.+|. |..++.++
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~   77 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAR   77 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence            57999999999999999999988  8888898 77776554

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.98  E-value=1.6e-05  Score=58.50  Aligned_cols=51  Identities=22%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++......+|||||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   85 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK   85 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            4455444234558999999999999999999999999999999 77766554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.92  E-value=2.2e-05  Score=56.78  Aligned_cols=50  Identities=12%  Similarity=0.095  Sum_probs=42.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..++ .....+|||||||+|.++..+++..|..+++.+|. |..++.++
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~   81 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIR   81 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHH
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            4556666 67778999999999999999999999999999998 77766554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.87  E-value=2.2e-05  Score=56.63  Aligned_cols=52  Identities=17%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      .+++.++......+|+|+|||+|.++..+++.+|+.+++.+|. |..++.++.
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   72 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARR   72 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence            4555555225668999999999999999999999999999998 777777663

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.84  E-value=2e-05  Score=57.73  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++.+|+.+++.+|. |..++.|+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~   79 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV   79 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH
Confidence            446899999999999999999999999999998 56665543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.83  E-value=1.7e-05  Score=55.76  Aligned_cols=50  Identities=16%  Similarity=0.209  Sum_probs=41.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus        16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~   66 (178)
T 3hm2_A           16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL   66 (178)
T ss_dssp             HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH
T ss_pred             HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence            4555566 66667999999999999999999999999999998 65666554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.81  E-value=2.4e-05  Score=57.12  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=35.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~   82 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL   82 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHH
Confidence            457899999999999999999999999999998 66666543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=97.77  E-value=2.4e-05  Score=56.60  Aligned_cols=50  Identities=18%  Similarity=0.227  Sum_probs=40.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+++.++ .+.. +|||||||+|.++..++++ |..+++.+|. |..++.++
T Consensus        33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~   83 (219)
T 3dlc_A           33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIAL   83 (219)
T ss_dssp             HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHH
T ss_pred             HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence            345666666 5554 9999999999999999998 8899999998 76666554

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.77  E-value=2.8e-05  Score=56.73  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=38.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+.++ .....+|||||||+|.++..+++++|..+++.+|. |..++.++
T Consensus        21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~   70 (217)
T 3jwh_A           21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ   70 (217)
T ss_dssp             HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHH
T ss_pred             HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHH
Confidence            333343 34457999999999999999999999999999998 66666554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.77  E-value=1.8e-05  Score=57.24  Aligned_cols=40  Identities=18%  Similarity=0.081  Sum_probs=34.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~  106 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR  106 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            47999999999999999999999999999998 66665543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.76  E-value=3.3e-05  Score=57.01  Aligned_cols=40  Identities=13%  Similarity=0.272  Sum_probs=34.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|||||||+|.++..+++++|+.+++.+|. |..++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a   74 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGAC   74 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHH
Confidence            457999999999999999999999999999998 5555543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.75  E-value=0.00012  Score=55.56  Aligned_cols=49  Identities=20%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC--CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY--PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~--P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.+  .+...+|+|||||+|.++..+++++  |+++++.+|. |..++.|+
T Consensus        62 ~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~  113 (261)
T 4gek_A           62 MLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR  113 (261)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHH
T ss_pred             HHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            345555  3566799999999999999999985  6789999998 77777654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.75  E-value=6e-05  Score=56.70  Aligned_cols=51  Identities=12%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ..+.+.++ .....+|||||||+|.++..+++  |+.+++.+|+ |..++.++..
T Consensus        24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~   75 (261)
T 3ege_A           24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVH   75 (261)
T ss_dssp             HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCC
T ss_pred             HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhc
Confidence            35666666 66778999999999999999998  7889999998 6677766543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.75  E-value=2.6e-05  Score=56.87  Aligned_cols=49  Identities=20%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+.+. .....+|||||||+|.++..++++.|..+++.+|. |..++.++
T Consensus        21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~   70 (219)
T 3jwg_A           21 VVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAK   70 (219)
T ss_dssp             HHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHH
T ss_pred             HHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            333343 34457999999999999999999999999999998 66666554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.74  E-value=2.2e-05  Score=58.74  Aligned_cols=51  Identities=20%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++...+ .....+|||+|||+|.++..+++. .|..+++.+|. |..++.|+
T Consensus        83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~  135 (255)
T 3mb5_A           83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAW  135 (255)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred             HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHH
Confidence            35666677 777789999999999999999999 89999999999 67776654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.71  E-value=3.5e-05  Score=58.58  Aligned_cols=50  Identities=14%  Similarity=0.038  Sum_probs=38.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ +....+|||+|||+|.++..+++. +|..+++.+|. |..++.++
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~  152 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM  152 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            4556666 777789999999999999999998 89999999998 77766543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.71  E-value=8.4e-05  Score=57.37  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .|.+ +..........+++.++.+....+|||||||+|.++..+++++ ..+++.+|. |..++.++
T Consensus        93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~  157 (312)
T 3vc1_A           93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGN  157 (312)
T ss_dssp             HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred             HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            4444 3333333334555555435566899999999999999999986 678999998 66666554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.69  E-value=5e-05  Score=56.58  Aligned_cols=49  Identities=12%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+.+.++ .....+|||||||+|.++..+++..+. +++.+|. |..++.++
T Consensus        35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~   84 (253)
T 3g5l_A           35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAK   84 (253)
T ss_dssp             HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHH
T ss_pred             HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHH
Confidence            4455555 445689999999999999999999766 8999998 66666553

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.68  E-value=3.6e-05  Score=56.03  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++.. |..+++.+|. |..++.++
T Consensus        28 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~   79 (219)
T 3dh0_A           28 KVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAW   79 (219)
T ss_dssp             HHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence            4666666 7777899999999999999999997 8899999998 66666543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.67  E-value=6.8e-05  Score=57.54  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=41.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..++++++ .+++.+|+ |..++.++
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~  112 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDK  112 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHH
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHH
Confidence            35667676 77778999999999999999999988 89999998 66666554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.65  E-value=4.4e-05  Score=55.68  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=34.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      .....+|||||||+|.++..+++.+|..+++.+|. |..++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~   65 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME   65 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            45567999999999999999999999999999998 44333

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.65  E-value=4e-05  Score=58.84  Aligned_cols=41  Identities=17%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++++|..+++.+|. |..++.|+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~   87 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR   87 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            458999999999999999999999999999998 77777665

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.64  E-value=3.8e-05  Score=57.24  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=41.3

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~   74 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAA   74 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            4566666 66668999999999999999999999999999998 66666543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.64  E-value=9.4e-05  Score=56.65  Aligned_cols=42  Identities=33%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++++ |..+++.+|. |..++.++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~   78 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE   78 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence            566899999999999999999997 8999999998 66776654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.63  E-value=0.00013  Score=54.86  Aligned_cols=49  Identities=14%  Similarity=0.326  Sum_probs=40.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.++ .....+|||||||+|.++..+++++ ..+++.+|+ |..++.+
T Consensus        51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a  100 (273)
T 3bus_A           51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQA  100 (273)
T ss_dssp             HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHH
Confidence            45677777 7777899999999999999999987 689999998 6665544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.63  E-value=0.0001  Score=54.84  Aligned_cols=50  Identities=14%  Similarity=0.282  Sum_probs=40.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..+++.+ ..+++.+|. |..++.++
T Consensus        26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~   76 (256)
T 1nkv_A           26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAK   76 (256)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHH
Confidence            35666666 7777899999999999999999988 678999998 66666553

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.62  E-value=3.2e-05  Score=57.71  Aligned_cols=41  Identities=15%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++.+|+..++.+|. +..++.|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A   86 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYV   86 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHH
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence            3457899999999999999999999999999998 6666543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.61  E-value=9.5e-05  Score=53.06  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=37.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC--CCeEEEccchH
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP--QIRGINFDLPH  156 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P--~l~~~v~DlP~  156 (168)
                      .+.+.|..+....+|+|||||+|.++..+++++|  ..+++.+|+.+
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            4566666245567999999999999999999998  68899999854

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.61  E-value=3.7e-05  Score=60.06  Aligned_cols=40  Identities=18%  Similarity=0.322  Sum_probs=36.9

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      .+|||||||.|.++..+++.+|+.+++++|+ |.+++.++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~  131 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSRE  131 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHH
Confidence            4999999999999999999999999999998 888888763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.60  E-value=9.9e-05  Score=60.76  Aligned_cols=50  Identities=14%  Similarity=0.043  Sum_probs=39.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      ..+++.++ .....+|+|||||+|.+++.+++ .|..+++.+|..+.++.|+
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~  197 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAE  197 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHH
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHH
Confidence            35666665 55567999999999999998887 6888999999977655543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.59  E-value=6e-05  Score=56.89  Aligned_cols=43  Identities=19%  Similarity=0.427  Sum_probs=37.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+|||||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   78 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR   78 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            56678999999999999999999999999999998 66666543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.59  E-value=3.2e-05  Score=57.62  Aligned_cols=40  Identities=10%  Similarity=0.044  Sum_probs=34.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|..+..+++..|. +++++|. |.+++.|+
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~  100 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR  100 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHH
Confidence            4469999999999999999998775 7888898 88888775

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.56  E-value=5.8e-05  Score=56.38  Aligned_cols=41  Identities=15%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++.+|+.+++.+|. |..++.+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a   89 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV   89 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHH
Confidence            4557999999999999999999999999999996 6666544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.55  E-value=0.00024  Score=50.60  Aligned_cols=45  Identities=20%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC---------CeEEEccchH
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ---------IRGINFDLPH  156 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~---------l~~~v~DlP~  156 (168)
                      .+.+.+..+....+|||||||+|.++..+++++|.         .+++.+|+-+
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~   65 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH   65 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence            45555653456689999999999999999999875         7899999854

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.54  E-value=0.00015  Score=52.48  Aligned_cols=50  Identities=20%  Similarity=0.153  Sum_probs=39.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      .+++.+.......+|||||||+|.++..++++  ..+++.+|. |..++.++.
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh
Confidence            45555543455579999999999999999998  678999998 777776553

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.53  E-value=9.9e-05  Score=56.20  Aligned_cols=49  Identities=16%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a  161 (168)
                      +++.+.......+|||||||+|.++..+++.+|. .+++.+|+ |..++.+
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a   63 (284)
T 3gu3_A           13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA   63 (284)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHH
T ss_pred             HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            4444422566789999999999999999999995 89999998 6566543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=0.00017  Score=50.48  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=38.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++  +..+++.+|. |..++.++
T Consensus        26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~   74 (183)
T 2yxd_A           26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTK   74 (183)
T ss_dssp             HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHH
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHH
Confidence            4555556 66667999999999999999999  8899999997 66665543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.50  E-value=0.00014  Score=58.07  Aligned_cols=50  Identities=20%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|+|||+|.+++.+++++|..+++.+|. |..++.++
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar  263 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR  263 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHH
Confidence            3566666 44447999999999999999999999999999998 66665543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.50  E-value=0.00012  Score=54.17  Aligned_cols=48  Identities=21%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-H-HHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-H-VIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~-vi~~a  161 (168)
                      .+.+.+.  ....+|||||||+|.++..+++++|+.+++.+|+- + +++.|
T Consensus        16 ~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A   65 (225)
T 3p2e_A           16 ELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDIS   65 (225)
T ss_dssp             HHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHH
T ss_pred             HHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            3444443  34579999999999999999999999999999983 4 44443

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.49  E-value=4e-05  Score=55.71  Aligned_cols=42  Identities=12%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|+|||+|.++..++...|+.+.+..|. +.-++.++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar   90 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS   90 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence            4467999999999999999999999999999998 45555443

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.49  E-value=6.1e-05  Score=55.96  Aligned_cols=50  Identities=14%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..++++. ..+++.+|. |..++.++
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~  133 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK  133 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHH
Confidence            35666666 5667899999999999999999887 557899997 66666543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.48  E-value=0.00018  Score=53.53  Aligned_cols=51  Identities=12%  Similarity=0.193  Sum_probs=42.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++..++ +....+|||+|||+|.++..+++. .|..+++.+|. |..++.++
T Consensus        86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~  138 (258)
T 2pwy_A           86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAE  138 (258)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            35667777 777789999999999999999999 78999999997 76666553

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.48  E-value=8e-05  Score=54.62  Aligned_cols=43  Identities=12%  Similarity=0.094  Sum_probs=36.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|..++.+++..| +.+++.+|. |..++.++
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  111 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR  111 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            34557999999999999999999988 789999998 76666554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.48  E-value=9.7e-05  Score=56.65  Aligned_cols=40  Identities=18%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++.+++. |+.+++.+|. |..++.|+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~  163 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIAR  163 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence            3468999999999999999999 9999999998 77776654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.48  E-value=0.00019  Score=54.46  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++..++ +....+|||+|||+|.++..++++ .|..+++.+|. |..++.++
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~  154 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE  154 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence            35667777 777789999999999999999999 78999999998 76666554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.48  E-value=0.00031  Score=52.78  Aligned_cols=44  Identities=14%  Similarity=0.249  Sum_probs=37.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccch
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLP  155 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP  155 (168)
                      ..+++.++ .....+|||||||+|.++..+++++ |+.+++.+|+-
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s   77 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA   77 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSS
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECC
Confidence            35667777 7777899999999999999999996 88999999984

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.48  E-value=8.3e-05  Score=55.94  Aligned_cols=41  Identities=15%  Similarity=0.094  Sum_probs=35.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|+|||||+|..++.++..+|+.+++.+|. |..++.+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a  120 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFV  120 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            4567999999999999999999999999999996 5555544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.48  E-value=0.00015  Score=53.59  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=35.5

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+.++...+|||||||+|.++..+++.  +.+++.+|+ |..++.++
T Consensus        32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCE   80 (240)
T ss_dssp             HGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHH
T ss_pred             HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHH
Confidence            3333442455689999999999999999998  557889998 66665543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.48  E-value=0.00019  Score=54.66  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             HHHHHHc----CCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIY----KGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~----~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.+    + +....+|||||||+|.++..+++++ ..+++.+|+ |..++.+
T Consensus        68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a  121 (297)
T 2o57_A           68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRN  121 (297)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHH
T ss_pred             HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHH
Confidence            3556666    5 6777899999999999999999987 458999998 5555544

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.47  E-value=0.00015  Score=54.00  Aligned_cols=48  Identities=17%  Similarity=0.270  Sum_probs=38.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +++.+.......+|||||||+|.++..+++.+|. +++.+|. |..++.+
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a   85 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIF   85 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            4444432556679999999999999999999987 9999998 6666654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.46  E-value=0.00021  Score=50.19  Aligned_cols=49  Identities=12%  Similarity=0.091  Sum_probs=37.4

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.+.......+|+|+|||+|.++..++++ +..+++.+|. |..++.++
T Consensus        22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~   71 (177)
T 2esr_A           22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQ   71 (177)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHH
T ss_pred             HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHH
Confidence            3444432345579999999999999999987 7789999998 66766554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=97.45  E-value=0.00017  Score=53.45  Aligned_cols=49  Identities=12%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+++..+ .....+|||||||+|.++..+++..+  +++.+|. |..++.+
T Consensus        10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a   59 (239)
T 1xxl_A           10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVA   59 (239)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHH
T ss_pred             cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHH
Confidence            346777787 78889999999999999999999876  7888897 6566544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.45  E-value=0.00012  Score=54.41  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +....+|+|||||+|.++..+++..|+.+++.+|. |..++.+
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a  110 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFL  110 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence            34567999999999999999999999999999998 6555544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=97.45  E-value=0.00014  Score=54.38  Aligned_cols=48  Identities=25%  Similarity=0.382  Sum_probs=38.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++..+  +++.+|+ |..++.++
T Consensus        28 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~   76 (260)
T 1vl5_A           28 KLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVAR   76 (260)
T ss_dssp             HHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHH
T ss_pred             HHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHH
Confidence            5666666 66778999999999999999999986  8899997 66665543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.44  E-value=0.00018  Score=54.63  Aligned_cols=49  Identities=22%  Similarity=0.256  Sum_probs=39.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..++++++. +++.+|+ |..++.++
T Consensus        55 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~  104 (287)
T 1kpg_A           55 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQ  104 (287)
T ss_dssp             HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHH
T ss_pred             HHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            4566666 666789999999999999999977764 9999998 66666543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.44  E-value=0.00019  Score=55.69  Aligned_cols=50  Identities=24%  Similarity=0.397  Sum_probs=41.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....++||+|||+|.++..+++++|+.+++.+|. |..++.|+
T Consensus        17 e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~   67 (301)
T 1m6y_A           17 EVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE   67 (301)
T ss_dssp             HHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            4556666 66668999999999999999999999999999998 66666554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.43  E-value=0.00014  Score=54.59  Aligned_cols=49  Identities=16%  Similarity=0.216  Sum_probs=38.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.++......+|||||||+|.++..+++. |..+++.+|+ |..++.++
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~   86 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFN   86 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHH
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH
Confidence            3333332456689999999999999999998 8899999998 66665543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.43  E-value=9e-05  Score=55.27  Aligned_cols=50  Identities=26%  Similarity=0.458  Sum_probs=40.1

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..+++++ ..+++.+|. |..++.++
T Consensus        45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~   95 (266)
T 3ujc_A           45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMAN   95 (266)
T ss_dssp             HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence            34555565 6677899999999999999999988 789999998 66665544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.43  E-value=0.0001  Score=55.72  Aligned_cols=43  Identities=12%  Similarity=0.150  Sum_probs=36.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||+|||+|.+++.+++++|..+++.+|. |..++.++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~   77 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR   77 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            55567999999999999999999999999999998 66665543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.42  E-value=0.00029  Score=53.42  Aligned_cols=49  Identities=27%  Similarity=0.320  Sum_probs=38.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++  ....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus       101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~  150 (276)
T 2b3t_A          101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ  150 (276)
T ss_dssp             HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH
T ss_pred             HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3444443  3446999999999999999999999999999998 66665543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.42  E-value=0.00017  Score=53.28  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..+++..| .+++.+|. |..++.++
T Consensus        81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~  131 (235)
T 1jg1_A           81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAK  131 (235)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHH
Confidence            45666666 77778999999999999999999998 88999996 66666554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.42  E-value=0.00019  Score=54.31  Aligned_cols=44  Identities=18%  Similarity=0.110  Sum_probs=36.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCCCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQGI  167 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~~~  167 (168)
                      ...+|||||||+|.++..+++.+  .+++.+|. |..++.|+..++|
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v   83 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRV   83 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCc
Confidence            34689999999999999999986  46888898 6788888876654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.42  E-value=0.00021  Score=53.50  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..++++.+  +++.+|. |..++.++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~   89 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIAR   89 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHH
Confidence            3457999999999999999999854  7888998 77776654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.41  E-value=0.00011  Score=54.48  Aligned_cols=43  Identities=12%  Similarity=0.235  Sum_probs=37.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|..+..+++.+|..+++.+|. |..++.++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~  112 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK  112 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            34557999999999999999999999999999998 77776654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.41  E-value=0.00021  Score=51.78  Aligned_cols=47  Identities=9%  Similarity=0.031  Sum_probs=37.3

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.+. .....+|+|||||+|..+..++++  ..+++.+|+ |..++.|+
T Consensus        14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~   61 (203)
T 1pjz_A           14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYF   61 (203)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHH
T ss_pred             HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHH
Confidence            444455 566689999999999999999997  668999998 66666554

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.41  E-value=0.00027  Score=51.36  Aligned_cols=47  Identities=19%  Similarity=0.160  Sum_probs=38.4

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++..++ .....+|+|||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~   94 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQ   94 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence            455566 666789999999999999999998  789999998 66666544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.39  E-value=9.8e-05  Score=57.99  Aligned_cols=50  Identities=18%  Similarity=0.239  Sum_probs=40.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus       187 ~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~  237 (343)
T 2pjd_A          187 LLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR  237 (343)
T ss_dssp             HHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHH
T ss_pred             HHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            4666675 44456899999999999999999999999999998 55565543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.39  E-value=0.00012  Score=53.96  Aligned_cols=40  Identities=8%  Similarity=0.155  Sum_probs=34.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      +....+|+|||||+|.++..+++.+|..+++.+|. |..++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~  112 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR  112 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHH
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHH
Confidence            55668999999999999999999999888999998 55554

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.39  E-value=0.00014  Score=53.53  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=37.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+...++ .....+|||||||+|.++..+++..+ .+++.+|. |..++.++
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~   83 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARAR   83 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHH
Confidence            4556666 55668999999999999999998733 38899998 66666554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.38  E-value=0.00022  Score=54.95  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ .....+|||||||+|.++..+++.+ +.+++.+|. |..++.++
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~  130 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCE  130 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHH
Confidence            35566666 6667899999999999999999987 569999998 66666554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.36  E-value=0.0001  Score=56.21  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++++++..|..+++.+|+ |.+++.++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar  116 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSK  116 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHH
Confidence            457999999999999999999878889999998 88888765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.36  E-value=0.00019  Score=52.94  Aligned_cols=42  Identities=7%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|..+..+++.+|..+++.+|. |..++.++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~   95 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAH   95 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHH
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence            3456999999999999999999999999999998 66666554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.36  E-value=0.00049  Score=49.84  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=37.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.+. .....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   91 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAAR   91 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence            4555555 445589999999999999999998  668999998 66666554

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.35  E-value=0.00029  Score=50.17  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   71 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVE   71 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence            3555566 555679999999999999999987  678999998 66666543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.35  E-value=0.00033  Score=52.89  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..++..++ .....+|||||||+|.++..+++. .|..+++.+|. |..++.++
T Consensus        89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~  141 (280)
T 1i9g_A           89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR  141 (280)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            35666677 777789999999999999999996 68899999998 77766543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.34  E-value=0.00037  Score=49.11  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=34.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||+|||+|.++..+++ .+..+++.+|. |..++.++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~   84 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIK   84 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHH
Confidence            44557999999999999999888 56778999998 66766554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.33  E-value=9.5e-05  Score=55.00  Aligned_cols=41  Identities=17%  Similarity=0.000  Sum_probs=35.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++.+++..|..+++..|. |..++.|+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~   56 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV   56 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            446999999999999999999999999999997 55665554

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.33  E-value=0.00026  Score=53.59  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=38.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++  |..+++.+|. |..++.++
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~   96 (279)
T 3ccf_A           48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKAR   96 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence            4556666 66668999999999999999998  7889999998 66555443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.32  E-value=0.00033  Score=56.91  Aligned_cols=49  Identities=6%  Similarity=0.159  Sum_probs=38.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.++ .....+|||||||+|.+++.+++.+|..+++.+|+ |..++.|
T Consensus       233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT  282 (433)
T ss_dssp             HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4455555 66678999999999999999999999889999998 4444433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.32  E-value=0.00087  Score=51.81  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=37.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|||||+|.++..++.+.|+.+++.+|. |+.++.|+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar  163 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSR  163 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHH
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHH
Confidence            66779999999999988777777789999999998 78887765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.32  E-value=0.00032  Score=50.82  Aligned_cols=50  Identities=10%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.+. .....+|||||||+|.++..+++.. |+.+++.+|. |..++.++
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~  119 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAE  119 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHH
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            4555555 6666899999999999999999988 7789999997 66665543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.31  E-value=0.00036  Score=56.40  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.+. .....+|+|||||+|.+++.+++.++.-+++.+|+ |..++.|
T Consensus       163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelA  213 (438)
T 3uwp_A          163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYA  213 (438)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            34566666 66778999999999999999999988778999998 4444433

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.30  E-value=0.00011  Score=54.86  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++++|+.+++.+|. |..++.|+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~  106 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK  106 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            456999999999999999999999999999998 66666544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.29  E-value=0.00018  Score=50.97  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=34.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|||||+|.++..++++  ..+++.+|. |..++.|+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~   61 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTS   61 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHH
Confidence            455679999999999999999998  788999997 66666553

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.29  E-value=0.00018  Score=53.64  Aligned_cols=49  Identities=20%  Similarity=0.079  Sum_probs=38.8

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHH--CCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSK--YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.+. -....+|+|+|||+|.+++.+++.  +|..+++.+|. |..++.|+
T Consensus        43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~   94 (250)
T 1o9g_A           43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA   94 (250)
T ss_dssp             HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred             HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence            344343 234579999999999999999998  88889999998 77777654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.28  E-value=0.00053  Score=50.96  Aligned_cols=40  Identities=18%  Similarity=0.187  Sum_probs=32.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .....+|||||||+|.++..+++.  ..+++.+|. |..++.+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a   77 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVF   77 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence            566789999999999999999987  568899997 5555544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.28  E-value=0.00011  Score=53.56  Aligned_cols=47  Identities=19%  Similarity=0.270  Sum_probs=36.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++  ....+|+|||||+|.++..+++. + .+++.+|. |..++.++
T Consensus        24 ~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~   71 (230)
T 3cc8_A           24 NLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAK   71 (230)
T ss_dssp             HHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHH
T ss_pred             HHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHH
Confidence            4555444  45579999999999999999998 5 88999998 55655443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.28  E-value=0.00037  Score=49.15  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=38.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.+. .....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~   91 (194)
T 1dus_A           43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAK   91 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHH
T ss_pred             HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence            4566666 666789999999999999999998  778999998 66665543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.28  E-value=0.0002  Score=52.28  Aligned_cols=42  Identities=10%  Similarity=0.050  Sum_probs=36.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|..+..+++++| +.+++.+|. |..++.++
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  100 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR  100 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999999999 789999998 77776554

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.28  E-value=0.00018  Score=55.67  Aligned_cols=42  Identities=12%  Similarity=0.164  Sum_probs=36.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++..|..+++.+|+ |.+++.++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~  136 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSK  136 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            4557999999999999999999888889999998 77877654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.27  E-value=0.00033  Score=53.17  Aligned_cols=49  Identities=8%  Similarity=0.038  Sum_probs=38.4

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++..+ .....+|||||||+|.++..++++  ..+++.+|. |..++.++
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar   84 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLA   84 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHH
Confidence            34566666 677789999999999999999987  568899998 55665543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.26  E-value=0.00021  Score=53.46  Aligned_cols=43  Identities=9%  Similarity=0.186  Sum_probs=36.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|..+..+++++| +.+++.+|. |..++.++
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~  105 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR  105 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            34557999999999999999999999 899999998 77776554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.26  E-value=0.00043  Score=51.19  Aligned_cols=41  Identities=29%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.++..+++..+  +++.+|. |..++.++
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~   95 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAA   95 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHH
Confidence            34557899999999999999999988  7888887 66666553

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.24  E-value=0.00022  Score=50.95  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||+|||+|.++..+++++ |..+++.+|. |..++.++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~   64 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTT   64 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            4555799999999999999999986 7789999998 66666543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.24  E-value=0.0002  Score=54.41  Aligned_cols=47  Identities=23%  Similarity=0.324  Sum_probs=35.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+.+.++ .....+|||||||+|.++..++++.  .+++.+|. |..++.+
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a   95 (293)
T 3thr_A           48 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYA   95 (293)
T ss_dssp             HHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHH
T ss_pred             HHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHH
Confidence            3444444 4455799999999999999999984  48899998 5566554

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.24  E-value=0.00018  Score=56.54  Aligned_cols=43  Identities=9%  Similarity=0.108  Sum_probs=37.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.+++.+++..|..+++.+|+ |.+++.|+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar  161 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSK  161 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            34568999999999999999999888899999998 77877665

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.23  E-value=0.00032  Score=55.19  Aligned_cols=52  Identities=17%  Similarity=0.066  Sum_probs=43.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +..++.... |.....|+|+|||+|.++++++... |+.+++.+|. |..++.|+
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~  245 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR  245 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH
Confidence            345566666 8878899999999999999999998 9999999998 66776554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.22  E-value=0.00018  Score=56.21  Aligned_cols=41  Identities=22%  Similarity=0.140  Sum_probs=36.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++.+++..|..+++.+|. |.+++.++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar  157 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSK  157 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            457999999999999999999888899999998 78887665

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.21  E-value=0.00015  Score=54.49  Aligned_cols=41  Identities=10%  Similarity=0.055  Sum_probs=35.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++.+++..|..+++..|. |..++.|+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~   62 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ   62 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            447999999999999999999999999999997 55665554

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.21  E-value=0.00054  Score=48.19  Aligned_cols=48  Identities=23%  Similarity=0.220  Sum_probs=38.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||+|||+|.++..+++..  .+++.+|. |..++.++
T Consensus        24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~   72 (192)
T 1l3i_A           24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTE   72 (192)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHH
Confidence            3455556 6667899999999999999999987  78899998 66666543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.20  E-value=0.0002  Score=54.85  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|||||.|..+..+++..|..+++.+|+ |.+++.++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~  119 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSK  119 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            4558999999999999999999888899999998 77887665

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.20  E-value=0.00036  Score=52.36  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=35.5

Q ss_pred             CC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .. ...+|||||||+|.++..++++.+. +++.+|. |..++.++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~   89 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAK   89 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHH
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHH
Confidence            66 6789999999999999999999877 8999998 66666543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.19  E-value=0.0002  Score=55.23  Aligned_cols=41  Identities=17%  Similarity=0.266  Sum_probs=36.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.++..+++..|..+++.+|+ |.+++.++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~  131 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAAR  131 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            347999999999999999999888899999998 77877654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.19  E-value=0.00057  Score=49.21  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=36.1

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      ....+.+.|.-+....+|||+|||+|.++..++++  ..+++.+|+-
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~   56 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQ   56 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESS
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecc
Confidence            33466777763456689999999999999999988  7788888974

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.19  E-value=0.00029  Score=51.45  Aligned_cols=41  Identities=15%  Similarity=0.106  Sum_probs=35.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|..+..+++++| +.+++.+|. |..++.++
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  106 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAK  106 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH
Confidence            446999999999999999999998 789999998 66665544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.19  E-value=0.00021  Score=55.55  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++..|..+++.+|+ |.+++.++
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar  118 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAK  118 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999999888889999998 77877665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.19  E-value=0.00021  Score=55.42  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.+++.++++.|..+++.+|+ |.+++.++
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar  136 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSK  136 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            34568999999999999999999888899999998 77877665

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.18  E-value=0.00011  Score=51.40  Aligned_cols=48  Identities=17%  Similarity=0.096  Sum_probs=37.9

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|||||||+|.++..+++...  +++.+|. |..++.++
T Consensus         8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~   56 (170)
T 3i9f_A            8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVK   56 (170)
T ss_dssp             TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHH
T ss_pred             HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHH
Confidence            3455555 66678999999999999999999884  8899998 66666543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.18  E-value=0.00031  Score=50.97  Aligned_cols=47  Identities=15%  Similarity=0.063  Sum_probs=36.0

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.+. .....+|||||||+|.++..++++  +.+++.+|. |..++.++
T Consensus        37 ~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   84 (220)
T 3hnr_A           37 ILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAK   84 (220)
T ss_dssp             HHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred             HHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHH
Confidence            444444 445579999999999999999998  678999998 65665443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.18  E-value=0.00047  Score=51.87  Aligned_cols=50  Identities=30%  Similarity=0.442  Sum_probs=39.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++..+ .....+|+|||||+|.++..++++ +..+++.+|. |..++.++
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~   71 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLK   71 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHT
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence            45677777 666789999999999999999987 5678899998 55555554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.18  E-value=0.00027  Score=49.04  Aligned_cols=39  Identities=15%  Similarity=0.097  Sum_probs=32.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.++..++++.+.  ++.+|. |..++.++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~   80 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLK   80 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHH
Confidence            4469999999999999999999776  899998 66666544

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.17  E-value=0.00018  Score=53.62  Aligned_cols=42  Identities=14%  Similarity=-0.059  Sum_probs=35.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|||||+|.+++.+++..|..+++..|. |..++.|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~   62 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL   62 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            3447999999999999999999999999999997 55665554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.17  E-value=0.00021  Score=54.61  Aligned_cols=40  Identities=15%  Similarity=0.239  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|.+++.+++. |..+++.+|+ |.+++.++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar  115 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSK  115 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence            4579999999999999999998 8889999998 78887665

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.17  E-value=0.0013  Score=45.43  Aligned_cols=45  Identities=24%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPH  156 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~  156 (168)
                      .+++.+.......+|||||||+|.++..+++.+ |+.+++.+|..+
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~   57 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence            455555523456799999999999999999995 778999998754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.17  E-value=0.00024  Score=55.36  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=36.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|||||+|..++.+++..|..+++.+|+ |.+++.|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar  149 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAK  149 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence            457999999999999999999888899999998 78887765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.16  E-value=0.00066  Score=50.30  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=37.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++... .....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~   80 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVAR   80 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence            4455554 455679999999999999999987  678999998 66666543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.15  E-value=0.00083  Score=48.40  Aligned_cols=48  Identities=10%  Similarity=0.196  Sum_probs=38.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....+|+|||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~  116 (210)
T 3lbf_A           68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQAR  116 (210)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHH
Confidence            4555666 677789999999999999999998  678899998 66666544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.14  E-value=0.00031  Score=52.06  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=35.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|..+..+++..| ..+++.+|. |..++.++
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  102 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR  102 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999999998 689999998 66666554

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.14  E-value=0.00044  Score=51.94  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|||||+|.+++.+++..+  +++.+|. |..++.++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~  159 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAE  159 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHH
Confidence            4457999999999999999999876  8999998 66665544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.14  E-value=0.00031  Score=50.90  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|..+..+++..| +.+++.+|. |..++.++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~   98 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHAR   98 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            446999999999999999999998 789999998 66666544

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.14  E-value=0.00041  Score=52.58  Aligned_cols=42  Identities=12%  Similarity=-0.001  Sum_probs=36.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ....+|+|||||+|..+.++++. + .+++.+|+ |.+++.++..
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~  113 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISF  113 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTT
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHH
Confidence            45579999999999999999998 8 89999998 8899988753

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.13  E-value=0.00054  Score=53.86  Aligned_cols=48  Identities=15%  Similarity=0.042  Sum_probs=36.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a  161 (168)
                      .+.+.+. .....+|||||||+|.++..++++ +..+++.+|..+.++.+
T Consensus        41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a   88 (348)
T 2y1w_A           41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHA   88 (348)
T ss_dssp             HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHH
T ss_pred             HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHH
Confidence            4556565 555679999999999999998885 66789999986554443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.12  E-value=0.00015  Score=55.71  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHH-HHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLV-SKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~-~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+|||||||+|.++..++ +.+|+.+++.+|. |..++.++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~  160 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT  160 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence            4566899999999999999996 7799999999998 77776554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.12  E-value=0.00064  Score=50.84  Aligned_cols=48  Identities=17%  Similarity=0.267  Sum_probs=37.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++..+ .....+|||||||+|.++..++++.  .+++.+|. |..++.+
T Consensus        20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a   68 (244)
T 1qam_A           20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTT   68 (244)
T ss_dssp             HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHH
T ss_pred             HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHH
Confidence            45666666 6666899999999999999999986  67888887 5555443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.11  E-value=0.00032  Score=51.52  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=30.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|||||||+|.++..+++..+  +++.+|. |..++.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a   80 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHA   80 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHH
Confidence            446899999999999999999887  5777887 5555544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.10  E-value=0.00044  Score=52.88  Aligned_cols=49  Identities=10%  Similarity=0.114  Sum_probs=38.0

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+++.++ ... .+|||||||+|.++..++++  ..+++.+|. |..++.++
T Consensus        72 ~~~~~~~~~-~~~-~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~  121 (299)
T 3g2m_A           72 AREFATRTG-PVS-GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFR  121 (299)
T ss_dssp             HHHHHHHHC-CCC-SCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhC-CCC-CcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence            345666666 333 49999999999999999998  578999998 66766554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.10  E-value=0.00069  Score=48.90  Aligned_cols=41  Identities=12%  Similarity=0.199  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   82 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEAS   82 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence            445679999999999999999987  668999998 66665543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.09  E-value=0.00041  Score=53.18  Aligned_cols=48  Identities=19%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHHhh
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ--IRGINFDL-PHVIKD  160 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~  160 (168)
                      .+++..+ .....+|||||||+|.++..++++.+.  .+++.+|. |..++.
T Consensus        33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR   83 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred             HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence            4666676 666789999999999999999998765  45788887 444443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.08  E-value=0.00085  Score=52.29  Aligned_cols=50  Identities=20%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..++ .....+|||||||+|.++..+++. .|+.+++.+|. |..++.|+
T Consensus        96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~  147 (336)
T 2b25_A           96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK  147 (336)
T ss_dssp             HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            4556666 667789999999999999999998 58899999998 66665543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.07  E-value=0.00082  Score=52.05  Aligned_cols=50  Identities=12%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .....+|+|||||+|.++..+++..+. .+++.+|+ |..++.++
T Consensus        66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~  117 (317)
T 1dl5_A           66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK  117 (317)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            4555566 666789999999999999999999884 78999997 66666544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.07  E-value=0.00086  Score=49.38  Aligned_cols=40  Identities=8%  Similarity=0.009  Sum_probs=33.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|..++.++++.| +.+++.+|. |..++.|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~   98 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK   98 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            35999999999999999999986 789999998 66665543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.07  E-value=0.00036  Score=51.89  Aligned_cols=39  Identities=10%  Similarity=0.026  Sum_probs=33.8

Q ss_pred             CeEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSK----YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||||||+|..+..+++.    +|+.+++.+|. |..++.++
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~  126 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA  126 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh
Confidence            69999999999999999998    79999999998 66666554

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.06  E-value=0.00041  Score=51.53  Aligned_cols=42  Identities=12%  Similarity=0.071  Sum_probs=35.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+..+|||||||+|..++.++++.| +.+++.+|. |..++.++
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  112 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL  112 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            4557999999999999999999988 789999998 66666554

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.05  E-value=0.0016  Score=49.66  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=27.9

Q ss_pred             CCeEEEecCCccHHHH----HHHHHCCCCeE--EEccc-hHHHhh
Q 030988          123 INQLVDVAGGLGANIS----LLVSKYPQIRG--INFDL-PHVIKD  160 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~----~l~~~~P~l~~--~v~Dl-P~vi~~  160 (168)
                      ..+|||||||+|.++.    .++.++|+.++  +.+|. |+.++.
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~   97 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK   97 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHH
Confidence            4689999999997554    45667798865  89996 444443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.05  E-value=0.00048  Score=50.39  Aligned_cols=42  Identities=7%  Similarity=0.096  Sum_probs=35.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|..++.++++.| +.+++.+|. |..++.|+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  100 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQ  100 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHH
Confidence            3457999999999999999999875 889999998 66666554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.04  E-value=0.00084  Score=49.00  Aligned_cols=36  Identities=8%  Similarity=0.063  Sum_probs=31.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      .....+|||||||+|.++..+++..|.-+++.+|.-
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s   90 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYS   90 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECC
Confidence            556679999999999999999999987789999984

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.03  E-value=0.00064  Score=48.88  Aligned_cols=41  Identities=15%  Similarity=0.058  Sum_probs=33.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++ +|..+++.+|. |..++.++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~  100 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAE  100 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999776 67789999998 66666554

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.03  E-value=0.00014  Score=52.78  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=34.3

Q ss_pred             HcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       116 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ... .....+|||||||+|.++..+++..  .+++.+|. |..++.++
T Consensus        46 ~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~   90 (216)
T 3ofk_A           46 SLS-SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRAC   90 (216)
T ss_dssp             HTT-TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHH
T ss_pred             Hcc-cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHH
Confidence            344 5566899999999999999999985  47888998 66665543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.02  E-value=0.0011  Score=48.39  Aligned_cols=48  Identities=10%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.+. .....+|||||||+|.++..+++..  .+++.+|. |..++.++
T Consensus        61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~  109 (231)
T 1vbf_A           61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYAS  109 (231)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHH
Confidence            4555566 6667899999999999999999986  67888887 55555443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.00  E-value=0.00096  Score=48.95  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..+++.   .+++.+|. |..++.++
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~   71 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQ   71 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHH
Confidence            479999999999999999887   78999998 66666543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.00  E-value=0.00075  Score=47.43  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ..+|+|||||+|.++..++++.   +++.+|. |..++.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~   59 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES   59 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc
Confidence            4599999999999999999987   8999998 555543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.00  E-value=0.00086  Score=53.69  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=40.3

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      +..+++.+. .....+|||||||+|.++..++++  ..+++.+|. |..++.++.
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~  147 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKARE  147 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHT
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHH
Confidence            446677777 777789999999999999999987  458999998 556665543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.98  E-value=0.00049  Score=50.43  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++..+  +++.+|. |..++.++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~   79 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHAR   79 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHH
Confidence            3457999999999999999999987  7888998 76766554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.97  E-value=0.0011  Score=48.61  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~   76 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAE   76 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHH
Confidence            4579999999999999999998  567899998 66665543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=96.97  E-value=0.0021  Score=48.56  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=37.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .. ..+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        60 ~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~  107 (285)
T 4htf_A           60 RVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAK  107 (285)
T ss_dssp             HHHHHTC-SS-CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CC-CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            4555565 33 479999999999999999998  778999998 66666554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.96  E-value=0.00052  Score=50.65  Aligned_cols=41  Identities=10%  Similarity=0.045  Sum_probs=31.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++..+. +++.+|. |..++.++
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~  100 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLR  100 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHH
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHH
Confidence            34469999999999999999765443 7899998 66666554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.96  E-value=0.00069  Score=49.35  Aligned_cols=40  Identities=25%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..++++  ..+++.+|. |..++.++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   69 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAE   69 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence            34579999999999999999998  678999998 66666544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.95  E-value=0.00055  Score=49.20  Aligned_cols=41  Identities=12%  Similarity=-0.013  Sum_probs=33.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++..+. +++.+|. |..++.++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~   82 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQ   82 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHH
Confidence            45579999999999999999998776 8899998 66665543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.94  E-value=0.0011  Score=50.82  Aligned_cols=48  Identities=17%  Similarity=0.353  Sum_probs=37.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.++ .....+|||||||+|.++..+++...  +++.+|. |..++.+
T Consensus        18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a   66 (285)
T 1zq9_A           18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAEL   66 (285)
T ss_dssp             HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHH
Confidence            45677777 77778999999999999999999854  7788887 5555443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.94  E-value=0.0005  Score=54.72  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=35.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++.+ |..+++.+|+ |..++.++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~  125 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVAR  125 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHH
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            45799999999999999999997 8999999998 66666554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.93  E-value=0.00058  Score=51.23  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|+|||||+|.++..+++.+|..+++.+|. |..++.+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a  125 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA  125 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence            3457999999999999999999999999999998 5555544

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.93  E-value=0.00047  Score=48.66  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .++..+.  ....+|+|||||+|.++..+++.  +.+++.+|. |..++.+
T Consensus        38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a   84 (195)
T 3cgg_A           38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYA   84 (195)
T ss_dssp             HHHHHHS--CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred             HHHHHhc--cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHH
Confidence            3555553  45679999999999999999987  568889997 5555544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.93  E-value=0.00067  Score=50.80  Aligned_cols=42  Identities=7%  Similarity=0.029  Sum_probs=35.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|..++.++++.| +.+++.+|. |..++.++
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~  121 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL  121 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999999998 789999998 66666554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.92  E-value=0.0017  Score=47.37  Aligned_cols=43  Identities=14%  Similarity=0.144  Sum_probs=35.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-----PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-----P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.++..+++..     |+.+++.+|. |..++.++
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~  126 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSL  126 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHH
Confidence            4556799999999999999999986     6789999998 65665543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.92  E-value=0.00061  Score=51.73  Aligned_cols=43  Identities=16%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+|+|+|||+|.+++.+++..+..+++.+|. |..++.++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~  160 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC  160 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence            45667999999999999999999999889999998 77776554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=96.91  E-value=0.0011  Score=51.61  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a  161 (168)
                      ...+|+|||||+|.++..++++ +..+++.+|..+.++.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a   76 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMA   76 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHH
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHH
Confidence            3469999999999999998886 55689999986555544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=96.91  E-value=0.00075  Score=51.11  Aligned_cols=47  Identities=17%  Similarity=0.143  Sum_probs=36.0

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.++ .....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus       112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~  159 (286)
T 3m70_A          112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLN  159 (286)
T ss_dssp             HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence            444444 345679999999999999999998  668999998 66665543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.90  E-value=0.001  Score=48.99  Aligned_cols=36  Identities=8%  Similarity=0.116  Sum_probs=32.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP  155 (168)
                      +....+|||||||+|.++..+++.+ |..+++.+|.-
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s  111 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS  111 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECC
Confidence            5566899999999999999999997 78899999983

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.89  E-value=0.00044  Score=51.66  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=33.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|||||||+|..++.++++.| +.+++.+|. |..++.|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a  101 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA  101 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCS
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            457999999999999999999987 789999997 5555444

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.89  E-value=0.0027  Score=48.80  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=31.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++ .+..+++.+|. |..++.+
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a   73 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQC   73 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHH
Confidence            3567999999999999999988 46778999998 5555543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.88  E-value=0.0012  Score=50.23  Aligned_cols=42  Identities=10%  Similarity=0.122  Sum_probs=32.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc--hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL--PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl--P~vi~~a~  162 (168)
                      .....+|||||||+|.+++.+++.. ..+++.+|.  |..++.++
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~  120 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLE  120 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHH
Confidence            3445799999999999999888863 348999999  56666543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=96.88  E-value=0.0012  Score=51.69  Aligned_cols=49  Identities=14%  Similarity=0.097  Sum_probs=36.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      .+.+... .....+|||||||+|.++..++++ +..+++.+|..+.++.++
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~  103 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAM  103 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHH
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHH
Confidence            3444444 555679999999999999999987 556899999865555543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.86  E-value=0.00092  Score=47.51  Aligned_cols=40  Identities=13%  Similarity=-0.066  Sum_probs=32.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.++..+++ .+..+++.+|. |..++.++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~   84 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIA   84 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHH
Confidence            447999999999999998877 46668999998 66766554

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.85  E-value=0.0026  Score=48.65  Aligned_cols=42  Identities=24%  Similarity=0.312  Sum_probs=33.3

Q ss_pred             CCCCeEEEecCCc---cHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGL---GANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~---G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+..+|||||||+   |....-+.+.+|+.+++.+|. |.+++.++
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar  122 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQ  122 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTH
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHH
Confidence            3568999999997   334444455789999999998 89998876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.84  E-value=0.0019  Score=47.64  Aligned_cols=48  Identities=17%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++...+ .....+|+|+|||+|.++..++++  ..+++.+|. |..++.++
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~  130 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQ  130 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHH
Confidence            4566666 667789999999999999999998  778999996 66655543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.84  E-value=0.0012  Score=47.20  Aligned_cols=42  Identities=19%  Similarity=0.106  Sum_probs=33.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|+|||+|.++..+++. +..+++.+|. |..++.++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~   91 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAK   91 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHH
Confidence            345579999999999999999987 5567999998 66666543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.84  E-value=0.0028  Score=47.08  Aligned_cols=41  Identities=15%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             HHHHHcCCCC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          112 KILEIYKGFE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+++.++ .. ...+|||||||+|.++..++++ ...+++.+|.
T Consensus        27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDi   68 (232)
T 3opn_A           27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDV   68 (232)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECS
T ss_pred             HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcC
Confidence            4555565 33 3469999999999999999987 3348999997

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.83  E-value=0.00096  Score=50.41  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++..+ .....+|+|||||+|.++..++++.  .+++.+|. |..++.+
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~   67 (255)
T 3tqs_A           19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFL   67 (255)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHH
Confidence            45677777 6777899999999999999999985  57888887 4444433

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.81  E-value=0.00079  Score=48.22  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..++++  +.+++.+|. |..++.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~   80 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELAR   80 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHH
Confidence            479999999999999999998  568899998 66666544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.81  E-value=0.00077  Score=53.50  Aligned_cols=40  Identities=13%  Similarity=-0.032  Sum_probs=35.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+||| |+|.+++.+++..|+.+++.+|+ |..++.++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~  212 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIE  212 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            347999999 99999999999999999999999 88888765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.80  E-value=0.00068  Score=50.55  Aligned_cols=49  Identities=14%  Similarity=0.283  Sum_probs=39.0

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++..+ .....+|||||||+|.++..+++..  .+++.+|. |..++.++
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~   68 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSS   68 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSS
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHH
Confidence            35666676 6666799999999999999999985  78899998 55665554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.79  E-value=0.0012  Score=48.46  Aligned_cols=41  Identities=17%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ....+|||||||+|.++..+++.  +.+++.+|. |..++.++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~   93 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKE   93 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHh
Confidence            34579999999999999999998  668999998 666665543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.79  E-value=0.001  Score=49.06  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=34.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|..++.+++..| +.+++.+|. |..++.++
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~  114 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK  114 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            346999999999999999999988 789999998 66665544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.79  E-value=0.0032  Score=47.03  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=32.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~   93 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAR   93 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            5579999999999999999987  568999998 66665443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.78  E-value=0.00095  Score=48.93  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=33.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   87 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLAR   87 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence            34579999999999999999998  678999998 66666543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.77  E-value=0.0007  Score=49.98  Aligned_cols=40  Identities=15%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..++++. ..+++.+|. |..++.++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~  119 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAK  119 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence            46799999999999999999887 568899998 66666543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.77  E-value=0.0021  Score=49.62  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=35.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      ..+++..+ .....+|||||||+|.++..++++  ..+++.+|. |..++
T Consensus        40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~   86 (295)
T 3gru_A           40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEP   86 (295)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHH
T ss_pred             HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHH
Confidence            35667776 666789999999999999999998  567788886 44443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=96.76  E-value=0.00098  Score=48.13  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||+|||+|.++..++++.+ .+++.+|. |..++.++
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~   93 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLK   93 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHH
T ss_pred             CeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHH
Confidence            6899999999999999887643 57899998 56666554

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00091  Score=49.13  Aligned_cols=46  Identities=13%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++.... ++. .+|||||||+|.++..+++  +..+++.+|. |..++.++
T Consensus        59 ~~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~  105 (235)
T 3lcc_A           59 LVDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKAN  105 (235)
T ss_dssp             HHHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHH
T ss_pred             HHHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence            344344 444 4999999999999999976  6778999998 66666543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.73  E-value=0.0017  Score=48.87  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=35.9

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++..+ .....+|||||||+|.++. +. +.+..+++.+|+ |..++.++
T Consensus        11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~   60 (252)
T 1qyr_A           11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQ   60 (252)
T ss_dssp             HHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHH
Confidence            45666666 6666799999999999999 54 555545888887 55555544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.72  E-value=0.0024  Score=45.86  Aligned_cols=42  Identities=12%  Similarity=-0.054  Sum_probs=32.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+|+|||+|.++..+++..+ -+++.+|. |..++.++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~   89 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLI   89 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHH
Confidence            34457999999999999999998743 37899998 66666543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=96.71  E-value=0.0011  Score=47.83  Aligned_cols=38  Identities=21%  Similarity=0.181  Sum_probs=30.7

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||+|||+|.+++.++++.. -+++.+|. |..++.++
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~   94 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLI   94 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHH
Confidence            6999999999999999887753 38899998 66666554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.71  E-value=0.00094  Score=55.96  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||.|.++..+++.  +.+++.+|+ |..|+.|+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~  105 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCR  105 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHH
Confidence            4469999999999999999998  788999998 66676654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.70  E-value=0.0013  Score=47.89  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a  161 (168)
                      .....+|||||||+|.++..+++.. |..+++.+|. |..++.+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a  118 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS  118 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence            3455799999999999999999885 7789999998 6666554

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.70  E-value=0.0016  Score=47.64  Aligned_cols=36  Identities=6%  Similarity=-0.012  Sum_probs=31.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP  155 (168)
                      +....+|+|+|||+|.++..+++.. |..+++.+|.-
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s  107 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFS  107 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECC
Confidence            5556799999999999999999885 67889999983

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.70  E-value=0.0013  Score=48.07  Aligned_cols=42  Identities=5%  Similarity=0.044  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGG-LGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg-~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|+||||| +|.++..+++.. ..+++.+|. |..++.++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~   96 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYAR   96 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHH
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHH
Confidence            4566899999999 999999999987 788999998 66666543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=96.68  E-value=0.0031  Score=47.60  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++. +..+++.+|. |..++.++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~  104 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDAR  104 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence            45579999999999999998776 5668999998 56665443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.66  E-value=0.0015  Score=50.33  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++..+ .....+|||||||+|.++..++++  ..+++.+|. |..++.+
T Consensus        32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a   80 (299)
T 2h1r_A           32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEV   80 (299)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHH
Confidence            35666666 666789999999999999999987  457888887 5555443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.66  E-value=0.0012  Score=49.58  Aligned_cols=39  Identities=5%  Similarity=0.038  Sum_probs=32.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|..+..+++.  ..+++.+|+ |..++.|
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a  106 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREF  106 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHH
Confidence            35579999999999999999987  679999998 6666655

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=96.66  E-value=0.0013  Score=50.09  Aligned_cols=41  Identities=17%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +...+|+|+|||+|.+++.+++..+. +++.+|. |..++.++
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~  165 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLV  165 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHH
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence            44579999999999999999999887 8999998 66666543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=96.65  E-value=0.0011  Score=52.23  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=32.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      ...+|||||||+|.++..++++ +..+++.+|..+.++.|+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~  105 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAV  105 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHH
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHH
Confidence            4479999999999999999997 777999999876555543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.61  E-value=0.0031  Score=48.04  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      ..+++..+ .... +|||||||+|.++..++++.  .+++.+|. |..++
T Consensus        37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~   82 (271)
T 3fut_A           37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRP   82 (271)
T ss_dssp             HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHH
T ss_pred             HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHH
Confidence            35667776 6666 99999999999999999985  56777776 44443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.60  E-value=0.0013  Score=48.41  Aligned_cols=39  Identities=28%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||||||+|.++..+++..  .+++.+|. |..++.++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~  117 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALAR  117 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHH
Confidence            44799999999999999999974  88999998 66666543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.60  E-value=0.0028  Score=50.64  Aligned_cols=49  Identities=8%  Similarity=0.138  Sum_probs=37.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.++ .....+|+|+|||+|.++.++++++ +..+++.+|. |..++.|
T Consensus        30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a   80 (421)
T 2ih2_A           30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP   80 (421)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred             HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence            4455555 4445699999999999999999987 7788999997 4444443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.59  E-value=0.0015  Score=51.82  Aligned_cols=43  Identities=14%  Similarity=0.009  Sum_probs=36.4

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |....+|+|+|||+|.+++.+++..+..+++.+|. |..++.|+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~  258 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE  258 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence            45667999999999999999999998778999998 66666554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=96.57  E-value=0.0014  Score=46.82  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=30.1

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +|||||||+|.++..+++.  ..+++.+|. |..++.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~   68 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAK   68 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHH
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence            9999999999999999987  568999998 55655443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=96.54  E-value=0.0029  Score=48.27  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=31.8

Q ss_pred             CCeEEEecCCccH----HHHHHHHHCC----CCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGA----NISLLVSKYP----QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~----~~~~l~~~~P----~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|+|||+|.    +++.+++..|    +.+++..|+ |.+++.|+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar  154 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKAR  154 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHH
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHH
Confidence            4689999999998    5666777756    468899998 77887765

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.46  E-value=0.0025  Score=46.62  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC------CCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP------QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P------~l~~~v~Dl-P~vi~~a  161 (168)
                      .....+|+|||||+|.++..+++..+      ..+++.+|. |..++.+
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a  130 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS  130 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH
Confidence            45557999999999999999998765      368899997 5555544

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.36  E-value=0.0065  Score=44.05  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=25.4

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+|||||||+|.++..+++.      +.+|. |..++.+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a   81 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIA   81 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHH
Confidence            579999999999999988765      77776 4454443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.36  E-value=0.0028  Score=49.09  Aligned_cols=48  Identities=15%  Similarity=0.100  Sum_probs=37.6

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a  161 (168)
                      ++...+ .....+|+|+|||+|..+..+++..+ ..+++.+|. |..++.+
T Consensus       110 ~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a  159 (315)
T 1ixk_A          110 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRET  159 (315)
T ss_dssp             HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHH
T ss_pred             HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence            445556 66668999999999999999999975 478999997 5545443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.36  E-value=0.0026  Score=55.60  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=35.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++.. |..+++.+|+ |..++.|+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AR  763 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAA  763 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Confidence            355799999999999999999998 5679999998 66666653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.34  E-value=0.0082  Score=46.20  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=32.5

Q ss_pred             HHHHHcCCCC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          112 KILEIYKGFE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+++.+. .. ...+++|||||+|.++..+++. +.-+++.+|.
T Consensus        75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDv  116 (291)
T 3hp7_A           75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDV  116 (291)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECS
T ss_pred             HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEEC
Confidence            4566666 44 3469999999999999988886 5568899997

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.33  E-value=0.0049  Score=44.43  Aligned_cols=38  Identities=18%  Similarity=-0.011  Sum_probs=26.8

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      +++.+.......+|||||||+|.++..+.     .+++.+|..
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s   95 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLA   95 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESS
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCC
Confidence            44444323455799999999999988873     567777753

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.25  E-value=0.0007  Score=51.52  Aligned_cols=40  Identities=20%  Similarity=0.139  Sum_probs=34.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ....+|+|||||.|.++..+...+|..+.+.+|. +.-++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~  171 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF  171 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Confidence            4478999999999999999999999999999998 444443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=96.24  E-value=0.0025  Score=45.65  Aligned_cols=40  Identities=10%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..++.. +..+++.+|. |..++.+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a   62 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKA   62 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHH
Confidence            34579999999999986655543 6779999998 5555544

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.23  E-value=0.0082  Score=46.23  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=29.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|..+..+++. ...+++.+|+ |..++.|+
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~   88 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGN   88 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHH
T ss_pred             CCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHH
Confidence            479999999999877776654 3468999998 56666654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.21  E-value=0.0044  Score=46.56  Aligned_cols=93  Identities=11%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             ccCCcchHHHhcCCchhHhhcC-CCc--hhH-HhHh----cHHHHHHHHHHHHHhh--HHHHHHHHHH----cCCCCCCC
Q 030988           59 DPWYHLKDCLLEGTLPFMKAHN-AKN--PFE-YAMK----AARRRNLFNQSMHNHA--ALVMKKILEI----YKGFEEIN  124 (168)
Q Consensus        59 ~~~~~L~~~l~~g~~~~~~~~g-~~~--~~e-~~~~----~p~~~~~f~~~m~~~~--~~~~~~~~~~----~~~~~~~~  124 (168)
                      ......+++++.-+....+.+| -.+  -|+ ++.+    ++      .+.|+...  +...+.+-..    ++ +....
T Consensus        35 ~~~~~~~~a~k~~k~~LH~i~ga~~~~~~~~~~l~~~~~~d~------~~~l~~H~STrerLp~ld~fY~~i~~-~~~p~  107 (253)
T 3frh_A           35 GRHKSPKQTVEAARTRLHGICGAYVTPESLKAAAAALSAGDV------KKALSLHASTKERLAELDTLYDFIFS-AETPR  107 (253)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCH------HHHHTTSHHHHHHGGGHHHHHHHHTS-SCCCS
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhccCCH------HHHHhhCCCHHHHhhhHHHHHHHHhc-CCCCC
Confidence            3456777777655555555665 111  111 1111    22      24454432  2223333333    34 44578


Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          125 QLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +|+|||||.|.++..+.   |..+.+.+|. +..++.+
T Consensus       108 ~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~a  142 (253)
T 3frh_A          108 RVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVI  142 (253)
T ss_dssp             EEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHH
T ss_pred             eEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHH
Confidence            99999999999999988   9999999998 4455443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0053  Score=48.74  Aligned_cols=41  Identities=15%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a  161 (168)
                      .....+|||||||+|.++..++++. ..+++.+|....++.+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a  101 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHA  101 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHH
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHH
Confidence            4556899999999999999999973 3488888886544443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.19  E-value=0.0061  Score=46.14  Aligned_cols=45  Identities=11%  Similarity=0.113  Sum_probs=36.2

Q ss_pred             HHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhh
Q 030988          115 EIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKD  160 (168)
Q Consensus       115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~  160 (168)
                      ...+ .....+|+|+|||+|..+..+++..++ .+++.+|. |..++.
T Consensus        77 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~  123 (274)
T 3ajd_A           77 IVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA  123 (274)
T ss_dssp             HHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHH
T ss_pred             HHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHH
Confidence            3445 556679999999999999999999887 78999998 444544

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=96.13  E-value=0.0022  Score=48.68  Aligned_cols=39  Identities=15%  Similarity=0.016  Sum_probs=28.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|||||||+|.++ .++...+..+++.+|+ |..++.+
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a  110 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQEL  110 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHH
Confidence            4479999999999944 3444445669999998 5566543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.12  E-value=0.008  Score=44.77  Aligned_cols=49  Identities=18%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             HHHHHcCC--CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhh
Q 030988          112 KILEIYKG--FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKD  160 (168)
Q Consensus       112 ~~~~~~~~--~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~  160 (168)
                      .++..++.  ++.-.+|+|+|||+|.++..+++.- |+=+++.+|. |..++.
T Consensus        65 ~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~  117 (233)
T 4df3_A           65 ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD  117 (233)
T ss_dssp             HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred             HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence            34444432  6677899999999999999999874 8889999997 555543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.11  E-value=0.0067  Score=45.95  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                      +....+|||||||+|.++..+++.   -+++.+|+-+.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m  106 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTL  106 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchh
Confidence            556679999999999999999887   57888888443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.09  E-value=0.0077  Score=48.71  Aligned_cols=48  Identities=15%  Similarity=0.294  Sum_probs=37.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .....+|+|+|||+|.++..+++.  ..+++.+|. |..++.|+
T Consensus       277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~  325 (433)
T 1uwv_A          277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQ  325 (433)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHH
T ss_pred             HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHH
Confidence            3445555 556679999999999999999987  678899998 66666543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.07  E-value=0.0064  Score=46.36  Aligned_cols=35  Identities=17%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV  157 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v  157 (168)
                      +....+|||||||+|.++..++++   -+++.+|+-+.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m  114 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTL  114 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchh
Confidence            556679999999999999999987   57888888443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.92  E-value=0.0073  Score=48.19  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=26.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY  144 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~  144 (168)
                      .++.... |.....|+|++||+|.++++.+..-
T Consensus       186 ~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~  217 (385)
T 3ldu_A          186 GLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIG  217 (385)
T ss_dssp             HHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHH
T ss_pred             HHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHH
Confidence            4556566 8877899999999999999988764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=95.91  E-value=0.0066  Score=46.79  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ...++|+=||||.|..++++++..|.-+++++|+ |.|++.++.
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~  125 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQ  125 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHh
Confidence            4568999999999999999999777778999998 889987764

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.90  E-value=0.0085  Score=47.97  Aligned_cols=35  Identities=9%  Similarity=-0.030  Sum_probs=28.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ  146 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~  146 (168)
                      ..++.... |.....|+|.+||+|.++++.+....+
T Consensus       191 a~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~  225 (393)
T 3k0b_A          191 AALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQN  225 (393)
T ss_dssp             HHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred             HHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcC
Confidence            35666666 888889999999999999998876554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=95.85  E-value=0.0046  Score=49.32  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      ++|||||||+|.+++..+++-. -+++.+|.-+.++.|+
T Consensus        85 k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~  122 (376)
T 4hc4_A           85 KTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAR  122 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHH
T ss_pred             CEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHH
Confidence            6899999999999988777633 3688888755555443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=95.84  E-value=0.0013  Score=48.84  Aligned_cols=40  Identities=15%  Similarity=0.024  Sum_probs=32.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++..+ .+++.+|. |..++.+
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a   95 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWEL   95 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHH
Confidence            4457999999999999999988876 57899998 5555554

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=95.79  E-value=0.013  Score=44.91  Aligned_cols=50  Identities=18%  Similarity=0.227  Sum_probs=41.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+++.++ ......+||.++|.|.++.+++++  +.+++.+|. |..++.++
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~   61 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAK   61 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence            346777777 777789999999999999999998  789999998 66766553

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=95.77  E-value=0.0071  Score=47.30  Aligned_cols=39  Identities=13%  Similarity=0.037  Sum_probs=31.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|||+|||+|.+++.+++...  +++.+|. |..++.++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~  192 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAK  192 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence            346999999999999999999744  8999998 66666543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.71  E-value=0.0058  Score=48.75  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=32.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.++..+++.  +.+++.+|. |..++.++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~  272 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQ  272 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHH
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence            3469999999999999999998  568999997 66666544

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=95.70  E-value=0.0035  Score=47.05  Aligned_cols=40  Identities=13%  Similarity=0.002  Sum_probs=27.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||||||+|.++..+++..- -+++.+|. |..++.+
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a   94 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL   94 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence            3447899999999988766554421 25888998 5555543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=95.64  E-value=0.0088  Score=45.10  Aligned_cols=41  Identities=20%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      +..... .....+|||+|||+|.+++.+++.  ..+++.+|.-+
T Consensus        75 l~~a~~-~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~  115 (258)
T 2r6z_A           75 IAKAVN-HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHP  115 (258)
T ss_dssp             HHHHTT-GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCH
T ss_pred             HHHHhC-cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECCh
Confidence            333344 455579999999999999999986  56899999844

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.61  E-value=0.0095  Score=48.41  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=36.8

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHh
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIK  159 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~  159 (168)
                      ++...+ .....+|+|+|||+|..+..+++..++ .+++.+|. |..++
T Consensus       251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~  298 (450)
T 2yxl_A          251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMK  298 (450)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHH
T ss_pred             HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence            344555 566679999999999999999999987 78999997 44443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=95.53  E-value=0.007  Score=43.39  Aligned_cols=42  Identities=14%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCC-eEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQI-RGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-P~vi~~a  161 (168)
                      ++..+.  ....+|+|||||+|.++..+     .. +++.+|. |..++.+
T Consensus        29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a   72 (211)
T 2gs9_A           29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVG   72 (211)
T ss_dssp             HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHH
T ss_pred             HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHH
Confidence            444444  25579999999999998887     45 8899997 5555543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.48  E-value=0.015  Score=46.49  Aligned_cols=35  Identities=14%  Similarity=0.006  Sum_probs=28.0

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ  146 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~  146 (168)
                      ..++.... |.....|+|.+||+|.++++.+....+
T Consensus       184 aall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~  218 (384)
T 3ldg_A          184 AAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMN  218 (384)
T ss_dssp             HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTT
T ss_pred             HHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcC
Confidence            34566666 888889999999999999998876554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.34  E-value=0.025  Score=41.98  Aligned_cols=44  Identities=14%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             HHHHHcCC--CCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccch
Q 030988          112 KILEIYKG--FEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDLP  155 (168)
Q Consensus       112 ~~~~~~~~--~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~DlP  155 (168)
                      .++..++.  +....+|+|+|||+|.++..+++. -|+-+++.+|.-
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s  110 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFS  110 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECC
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECc
Confidence            34444432  566789999999999999999876 467889999983

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=95.23  E-value=0.014  Score=46.40  Aligned_cols=39  Identities=10%  Similarity=-0.021  Sum_probs=33.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+|+|+|+|+|..++.++++.|..+++..|. |..++.+
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a   87 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELM   87 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            36899999999999999999999889999998 6555544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.18  E-value=0.036  Score=43.36  Aligned_cols=61  Identities=13%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHc-CCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988           98 FNQSMHNHAALVMKKILEIY-KGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD  160 (168)
Q Consensus        98 f~~~m~~~~~~~~~~~~~~~-~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~  160 (168)
                      +++++...+... +.+++.| . -.+..+||.+|||.......+...+|+++.+=+|+|+|++.
T Consensus        74 in~g~~~Rt~~i-D~~v~~fl~-~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~  135 (334)
T 1rjd_A           74 MNYGTYLRTVGI-DAAILEFLV-ANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVEL  135 (334)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHH-HCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHH-HCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHH
Confidence            445544444433 3333333 2 13568999999999999999999999999999999999874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.10  E-value=0.0075  Score=47.11  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCC-----CeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQ-----IRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~-----l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|+|+|||+|.++..+++..|.     .+++.+|+ |..++.|
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a  175 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA  175 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence            34579999999999999999998875     67899998 6555544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.10  E-value=0.013  Score=45.25  Aligned_cols=32  Identities=13%  Similarity=-0.037  Sum_probs=26.7

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +....+|||||||+|.++..++++   -+++.+|.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~  111 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKG  111 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence            455579999999999999999987   36777777

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.01  E-value=0.026  Score=43.09  Aligned_cols=47  Identities=17%  Similarity=0.095  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          107 ALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .+....+.+.|- +....+|||+|||+|.++.-+++..|-.+++-+|+
T Consensus        76 AfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv  122 (282)
T 3gcz_A           76 SAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL  122 (282)
T ss_dssp             HHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence            344456667775 77777999999999999998887776555555554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=94.97  E-value=0.043  Score=44.21  Aligned_cols=46  Identities=9%  Similarity=0.238  Sum_probs=36.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK  159 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~  159 (168)
                      ++...+ .....+|+|+|||+|..+..+++..|+.+++.+|. |..++
T Consensus       238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~  284 (429)
T 1sqg_A          238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLS  284 (429)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHH
T ss_pred             HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            444555 55667999999999999999999999988999997 43333

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.87  E-value=0.025  Score=45.04  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             CCeEEEecCCccHHHHHH--------HHHC-------CCCeEEEccchH
Q 030988          123 INQLVDVAGGLGANISLL--------VSKY-------PQIRGINFDLPH  156 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l--------~~~~-------P~l~~~v~DlP~  156 (168)
                      .-+|+|+|||+|..+..+        .+++       |++++..-|||.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~  101 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS  101 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence            478999999999876665        4444       889999999984

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=94.64  E-value=0.033  Score=44.89  Aligned_cols=34  Identities=12%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CCCeEEEecCC------ccHHHHHHHHH-CCCCeEEEccch
Q 030988          122 EINQLVDVAGG------LGANISLLVSK-YPQIRGINFDLP  155 (168)
Q Consensus       122 ~~~~vvDvGGg------~G~~~~~l~~~-~P~l~~~v~DlP  155 (168)
                      ...+|||||||      +|..++.++++ +|+.+++.+|+-
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiS  256 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIM  256 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECC
Confidence            34799999999      66666676665 699999999983

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=94.61  E-value=0.021  Score=43.55  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||+|||+|.+++.++++ ...+++.+|+ |..++.++
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~  165 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLV  165 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHH
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHH
Confidence            44579999999999999999886 4568999998 66666543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.61  E-value=0.02  Score=45.78  Aligned_cols=38  Identities=13%  Similarity=0.008  Sum_probs=30.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||+|||+|.+++.+++..  .+++.+|+ |..++.++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~  253 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLD  253 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHH
Confidence            5799999999999999999974  44899998 55555443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=94.56  E-value=0.022  Score=45.88  Aligned_cols=37  Identities=32%  Similarity=0.483  Sum_probs=30.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+|+|+|||+|..++.+++.  ..+++.+|. |..++.+
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~A  131 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAA  131 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHH
Confidence            479999999999999999887  468899997 5555544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.50  E-value=0.063  Score=40.48  Aligned_cols=43  Identities=19%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             HHHHHHcCCCCCC--CeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988          111 KKILEIYKGFEEI--NQLVDVAGGLGANISLLVSKYPQIRGINFDLPH  156 (168)
Q Consensus       111 ~~~~~~~~~~~~~--~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~  156 (168)
                      ..+++... ....  .+|||++||+|..+..++++  ..+++.+|.-+
T Consensus        76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~  120 (258)
T 2oyr_A           76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNP  120 (258)
T ss_dssp             SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCH
T ss_pred             HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCH
Confidence            35666665 6555  79999999999999999998  56899999844

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.46  E-value=0.049  Score=44.54  Aligned_cols=46  Identities=9%  Similarity=0.080  Sum_probs=36.0

Q ss_pred             HHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhh
Q 030988          114 LEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKD  160 (168)
Q Consensus       114 ~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~  160 (168)
                      +...+ .....+|||+|||+|..+..+++..++ .+++.+|. |.-++.
T Consensus        94 a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~  141 (464)
T 3m6w_A           94 GVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRG  141 (464)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHH
T ss_pred             HHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence            34445 556679999999999999999999876 68899997 444443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=94.32  E-value=0.03  Score=44.58  Aligned_cols=40  Identities=20%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.++..+++. +..+++.+|. |..++.++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~  257 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAK  257 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence            4579999999999999999986 4458899998 66665543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=94.28  E-value=0.027  Score=43.95  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|+|||+|.+++. ++  ...+++.+|. |..++.++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~  233 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLK  233 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHH
Confidence            3457999999999999999 77  4778999998 76766554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=94.27  E-value=0.023  Score=45.06  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=32.5

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.+++.+++.  ..+++.+|. |..++.++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~  248 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAE  248 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHH
Confidence            4569999999999999999998  567899998 66666554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.25  E-value=0.04  Score=43.92  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ..++|+=||||.|..++++++ ||.-+++++|+ |.|++.++.
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~  246 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKK  246 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHh
Confidence            457899999999999999998 56678999998 889988764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.22  E-value=0.028  Score=44.73  Aligned_cols=40  Identities=8%  Similarity=-0.117  Sum_probs=31.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.+++.+++.. .-+++.+|. |..++.|+
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~  252 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSL  252 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHH
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Confidence            34799999999999999999863 237899997 66666543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=94.19  E-value=0.054  Score=41.23  Aligned_cols=38  Identities=11%  Similarity=-0.022  Sum_probs=28.0

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeE
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRG  149 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~  149 (168)
                      ..+.+..- +....+|||+|||+|.++.-+++..+.-++
T Consensus        64 ~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v  101 (277)
T 3evf_A           64 RWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGV  101 (277)
T ss_dssp             HHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEE
T ss_pred             HHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcc
Confidence            34555544 666679999999999999988877654443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=94.17  E-value=0.041  Score=44.47  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.+++.+++.  ..+++.+|. |..++.|+
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~  329 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMAR  329 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence            4469999999999999999986  457888887 56665543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=94.15  E-value=0.032  Score=44.45  Aligned_cols=40  Identities=10%  Similarity=-0.008  Sum_probs=31.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+|+|+|||+|.+++.+++.. ..+++.+|. |..++.++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~  260 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIAR  260 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHH
Confidence            34699999999999999999874 457899998 66665543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=94.14  E-value=0.032  Score=45.18  Aligned_cols=50  Identities=16%  Similarity=0.087  Sum_probs=36.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-------------CCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-------------PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-------------P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++... .....+|+|.|||+|.++..+++..             +..+++.+|+ |..++.|
T Consensus       161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA  224 (445)
T 2okc_A          161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA  224 (445)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred             HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence            34555555 4455799999999999999988763             4567888887 6665544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=94.08  E-value=0.096  Score=41.26  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=33.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++..+ ..+ .+|+|+|||+|.+++.+++..  -+++.+|. |..++.|+
T Consensus       206 ~~~~~~-~~~-~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~  252 (369)
T 3bt7_A          206 ALDVTK-GSK-GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQ  252 (369)
T ss_dssp             HHHHTT-TCC-SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHH
T ss_pred             HHHHhh-cCC-CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHH
Confidence            444444 433 679999999999999988853  47888887 55665543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.83  E-value=0.064  Score=46.08  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=26.0

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSK  143 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~  143 (168)
                      ..++.... |.....|+|.+||+|.++++.+..
T Consensus       180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHH
Confidence            34566666 887789999999999999987765

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.69  E-value=0.046  Score=43.62  Aligned_cols=33  Identities=24%  Similarity=0.137  Sum_probs=28.0

Q ss_pred             CCeEEEecCCccHHHHHHHHH-----------------CCCCeEEEccch
Q 030988          123 INQLVDVAGGLGANISLLVSK-----------------YPQIRGINFDLP  155 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~-----------------~P~l~~~v~DlP  155 (168)
                      .-+|+|+||++|..+..+...                 .|+++++.-|||
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp  102 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF  102 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence            578999999999888777665                 588999999999

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=93.46  E-value=0.17  Score=43.51  Aligned_cols=51  Identities=6%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             CchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHH
Q 030988           82 KNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISL  139 (168)
Q Consensus        82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~  139 (168)
                      ...||.+.+|+-+-..|.+++..-       +.+....-.....|+|||||+|.++..
T Consensus       376 s~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~  426 (745)
T 3ua3_A          376 SGVYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTK  426 (745)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHH
T ss_pred             hHHHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHH
Confidence            467888899998888888876442       222222112346899999999998643

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=93.37  E-value=0.095  Score=44.51  Aligned_cols=66  Identities=14%  Similarity=0.173  Sum_probs=41.4

Q ss_pred             CchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCC---CCCCCeEEEecCCccHHHHHHHHHCCC----CeEEEccc
Q 030988           82 KNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG---FEEINQLVDVAGGLGANISLLVSKYPQ----IRGINFDL  154 (168)
Q Consensus        82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~---~~~~~~vvDvGGg~G~~~~~l~~~~P~----l~~~v~Dl  154 (168)
                      ...||.+++||-.-..|++|+..       .+.+..+.   -.....|+|||+|+|.++...+++--.    +++..++-
T Consensus       321 s~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEk  393 (637)
T 4gqb_A          321 SQTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEK  393 (637)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             hhhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            46789999999877788887633       23333221   223468999999999884444433222    35555554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.34  E-value=0.16  Score=39.81  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=43.1

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. ......+||...|.|..+.+++++. |+.+++.+|. |..++.++
T Consensus        47 ~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           47 DEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             HHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             HHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            46777777 6667899999999999999999985 8899999998 67777664

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.12  E-value=0.13  Score=39.21  Aligned_cols=46  Identities=13%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a  161 (168)
                      .+++.+.  .....|+|++||+|..++++++.  +-+++.+|+. ..++.|
T Consensus       227 ~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a  273 (297)
T 2zig_A          227 RLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLA  273 (297)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred             HHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence            4555554  23469999999999999999886  5689999984 444443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=93.05  E-value=0.096  Score=42.74  Aligned_cols=46  Identities=11%  Similarity=0.112  Sum_probs=35.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHh
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIK  159 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~  159 (168)
                      ++...+ .....+|||+|+|+|..+..+++..++ -+++.+|. |.-++
T Consensus        97 ~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~  144 (456)
T 3m4x_A           97 VGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAK  144 (456)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHH
T ss_pred             HHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            344455 556679999999999999999988765 68899997 44444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=92.29  E-value=0.2  Score=38.68  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             HHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHh
Q 030988          115 EIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIK  159 (168)
Q Consensus       115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~  159 (168)
                      ...+ .....+|+|+|+|+|..+..+++.. +.-+++.+|. |..++
T Consensus        96 ~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~  141 (309)
T 2b9e_A           96 MLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA  141 (309)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             HHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence            3445 5566799999999999999999874 5678999997 44444

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=91.95  E-value=0.2  Score=37.50  Aligned_cols=46  Identities=9%  Similarity=-0.004  Sum_probs=35.5

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      ....+.+.+- +.....|||+||++|.++.-++....--++..+|+-
T Consensus        66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG  111 (267)
T 3p8z_A           66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKG  111 (267)
T ss_dssp             HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecC
Confidence            3446666675 777779999999999999977776655578888873

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=91.45  E-value=0.14  Score=43.91  Aligned_cols=39  Identities=8%  Similarity=-0.061  Sum_probs=30.6

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||+|||+|.+++.+++... -+++.+|+ |..++.++
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~  579 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAE  579 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred             CCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHH
Confidence            46999999999999999998533 36899998 55665543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=90.97  E-value=0.47  Score=38.87  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHh
Q 030988          122 EINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIK  159 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~  159 (168)
                      ...+|+|+|||+|..+..+++..+ .-+++.+|. |.-++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~  156 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVK  156 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence            567999999999999999999876 478899997 44443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=90.86  E-value=0.11  Score=41.29  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=29.5

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      +..-.++||+|+++|.++.-++++  +.+++.+|.-
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~  242 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNG  242 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhh
Confidence            345689999999999999999988  7899999963

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=90.85  E-value=0.32  Score=37.37  Aligned_cols=46  Identities=11%  Similarity=0.099  Sum_probs=32.6

Q ss_pred             HHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          108 LVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +....+.+. .-+....++||+||++|.++.-+++..+-.+++.+|+
T Consensus        68 ~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl  113 (300)
T 3eld_A           68 AKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL  113 (300)
T ss_dssp             HHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence            333344455 3256678999999999999999998765545555555

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=90.83  E-value=0.23  Score=38.32  Aligned_cols=45  Identities=11%  Similarity=0.176  Sum_probs=33.8

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ....+.+.+. +.....||||||++|.++.-++....--++..+|+
T Consensus        82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv  126 (321)
T 3lkz_A           82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK  126 (321)
T ss_dssp             HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence            3345666665 66667999999999999997776655556788886

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=90.78  E-value=0.1  Score=41.24  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=26.2

Q ss_pred             CCCCeEEEecCCccHHHHH--------HHH--------HCCCCeEEEccchH
Q 030988          121 EEINQLVDVAGGLGANISL--------LVS--------KYPQIRGINFDLPH  156 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~--------l~~--------~~P~l~~~v~DlP~  156 (168)
                      ++.-+|+|+||++|..+..        +.+        ..|+++++.-|||.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~  101 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPG  101 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTT
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCc
Confidence            3457899999999964443        322        26788899999984

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=90.00  E-value=2.7  Score=29.31  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988           94 RRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus        94 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +.++|.+.|.+.... ....++...+.+  .-|+|+|=|+|..=-.+.+.+|+-+..|||+
T Consensus        15 RLDsfirRltaQR~~-L~~a~~~v~~~~--GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           15 RLDLFIDRMVSQRAC-LEHAIAQTAGLS--GPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHTTTCC--SCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhcCCC--CceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            356888888664332 334455554233  5799999999999999999999999999997

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.50  E-value=0.82  Score=35.21  Aligned_cols=60  Identities=18%  Similarity=0.232  Sum_probs=39.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccchHHHhhC
Q 030988           98 FNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLPHVIKDA  161 (168)
Q Consensus        98 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP~vi~~a  161 (168)
                      +.+.+...+.+. ..+++.+- -.+..+||++|+|.=..+..+.  +| +++++-+|+|.|++..
T Consensus        80 ~~~~~~~Rt~~~-d~~v~~~~-~~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k  140 (310)
T 2uyo_A           80 MRSYQAVRTNFF-DTYFNNAV-IDGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYK  140 (310)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHH-HTTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHH-HhCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHH
Confidence            444554444443 34444332 2456799999999887755554  35 4889999999998753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=88.89  E-value=0.3  Score=39.04  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=32.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||+++|+|.+++.++++.++ -+++..|. |..++.++
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~   94 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMK   94 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHH
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            468999999999999999998776 46899998 66665543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=88.80  E-value=0.36  Score=33.36  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=24.3

Q ss_pred             CCeEEEecCCccH-HHHHHHHHCCCCeEEEccc
Q 030988          123 INQLVDVAGGLGA-NISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ..++|+||+|+|. .+..|++. -+..++..|+
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDI   67 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDI   67 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECS
T ss_pred             CCcEEEEccCCChHHHHHHHHh-CCCeEEEEEC
Confidence            4699999999995 77777652 4677888886

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=88.06  E-value=0.22  Score=41.37  Aligned_cols=49  Identities=18%  Similarity=0.125  Sum_probs=33.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC------------------CCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP------------------QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P------------------~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++..+ .....+|+|.+||+|.++..+.+...                  ..+++.+|+ |..++.|
T Consensus       160 ~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          160 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             HHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            3455555 44457999999999999988876532                  236788887 5555443

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=88.05  E-value=1.2  Score=35.41  Aligned_cols=63  Identities=8%  Similarity=0.129  Sum_probs=41.0

Q ss_pred             hcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH---C----CCCeEEEccchHH
Q 030988           90 KAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSK---Y----PQIRGINFDLPHV  157 (168)
Q Consensus        90 ~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~---~----P~l~~~v~DlP~v  157 (168)
                      ..|+....|-+.....   ... +..... ....-+||++|.|+|.++..+++.   .    ..++..+++.-+.
T Consensus        53 Tapeis~~FGe~la~~---~~~-~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~  122 (387)
T 1zkd_A           53 TSPEISQMFGELLGLW---SAS-VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  122 (387)
T ss_dssp             SHHHHCHHHHHHHHHH---HHH-HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             CCCchHHHHHHHHHHH---HHH-HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHH
Confidence            4588777887776443   222 222233 334468999999999999988875   2    3456788877443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=87.89  E-value=0.77  Score=36.13  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=24.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...||+||.|.|.+...|+++...-++++++.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~   90 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK   90 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEec
Confidence            47899999999999999998743345555554

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=87.89  E-value=0.37  Score=42.16  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=33.0

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCC---CeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQ---IRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~---l~~~v~Dl-P~vi~~a  161 (168)
                      +....+|+|.|||+|.++++++++.+.   .+.+.+|. |..++.|
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA  364 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL  364 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence            334579999999999999999998873   46788887 5555544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=87.63  E-value=0.6  Score=35.69  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             CCCCCeEEEecC------CccHHHHHHHHHCC-CCeEEEccch
Q 030988          120 FEEINQLVDVAG------GLGANISLLVSKYP-QIRGINFDLP  155 (168)
Q Consensus       120 ~~~~~~vvDvGG------g~G~~~~~l~~~~P-~l~~~v~DlP  155 (168)
                      +....+||||||      |+|.  ..+++..| +.+++.+|+-
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis  101 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLN  101 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECC
Confidence            566679999999      5577  44566666 6889999973

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=86.93  E-value=0.86  Score=36.42  Aligned_cols=39  Identities=13%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCCCeEEEecCCccHHHHHHH-HHCCC-CeEEEccc-hHHHh
Q 030988          121 EEINQLVDVAGGLGANISLLV-SKYPQ-IRGINFDL-PHVIK  159 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~-~~~P~-l~~~v~Dl-P~vi~  159 (168)
                      +....++|||++.|.++..++ +..|. .+++.|+- |...+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~  266 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ  266 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence            455899999999999999988 67776 78988884 54443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=84.67  E-value=0.69  Score=38.50  Aligned_cols=48  Identities=23%  Similarity=0.107  Sum_probs=32.5

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC---------------CCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP---------------QIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P---------------~l~~~v~Dl-P~vi~~a  161 (168)
                      -+++..+ -.. .+|+|.+||+|.+++++++..+               ..+...+|+ |..+..|
T Consensus       236 lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA  299 (544)
T 3khk_A          236 LIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA  299 (544)
T ss_dssp             HHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH
T ss_pred             HHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH
Confidence            4455444 222 3999999999999988765433               456788887 5555544

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=83.16  E-value=1.7  Score=33.93  Aligned_cols=63  Identities=14%  Similarity=0.270  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHc-CCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccchHHHhh
Q 030988           97 LFNQSMHNHAALVMKKILEIY-KGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDLPHVIKD  160 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~-~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~DlP~vi~~  160 (168)
                      ..++++...+... +.++..| ....+..+||-+|||.=.....+... .++++..=+|+|+|++.
T Consensus        65 ~inrG~~~Rt~~i-D~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~  129 (334)
T 3iei_A           65 EINRGYFARVHGV-SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTR  129 (334)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHH
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHH
Confidence            4456655555543 2333333 20124679999999998888888765 36889999999999873

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=82.71  E-value=2.1  Score=31.69  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.+.  .....|+|..||+|..+.+..+.  +-+++.+|+ |..++.+
T Consensus       204 ~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~  250 (260)
T 1g60_A          204 RIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA  250 (260)
T ss_dssp             HHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred             HHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence            4555553  34469999999999999999887  678999998 4444443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=82.54  E-value=1.1  Score=33.87  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSK  143 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~  143 (168)
                      ...+-+.+ -++.-.+|||+||++|.++.-.++.
T Consensus        62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~   94 (269)
T 2px2_A           62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM   94 (269)
T ss_dssp             HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred             HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence            34565665 3777889999999999999988885

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=80.78  E-value=1.2  Score=33.21  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=26.1

Q ss_pred             CCCeEEEecCCccHHHHHHHHH-------CCC-----CeEEEccc
Q 030988          122 EINQLVDVAGGLGANISLLVSK-------YPQ-----IRGINFDL  154 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~-------~P~-----l~~~v~Dl  154 (168)
                      ...+|++||.|+|..++.+++.       +|+     ++++.++.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~  104 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK  104 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence            4479999999999988887665       784     57787775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	5e-35
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	4e-32
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	6e-32
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	9e-19
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	3e-16
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	1e-09
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	2e-09

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  120 bits (302), Expect = 5e-35
 Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 1/128 (0%)

Query: 41  DGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQ 100
           DGVS++ + L++Q+ V ++ WYHLKD +L+G +PF KA+     FEY     R   +FN+
Sbjct: 1   DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNK 59

Query: 101 SMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD 160
            M +H+ + MKKILE Y GFE +  LVDV GG GA I+ +VSKYP I+GINFDLPHVI+D
Sbjct: 60  GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 119

Query: 161 APSYQGIH 168
           APSY G+ 
Sbjct: 120 APSYPGVE 127

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  112 bits (282), Expect = 4e-32
 Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 44  SLAPIFLLSQENVNVDPWYHLKDCLLEGTL-PFMKAHNAKNPFEYAMKAARRRNLFNQSM 102
            LA           +  W + K+ +++  +  F   H     +E+  K  +   +FN+SM
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG-VTKYEFMGKDKKMNQIFNKSM 61

Query: 103 HNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP 162
            +  A  MK++LEIY GFE I+ LVDV GG G N+ L++SKYP I+GINFDLP VI++AP
Sbjct: 62  VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121

Query: 163 SYQGI 167
              GI
Sbjct: 122 PLSGI 126

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  112 bits (281), Expect = 6e-32
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 43  VSLAPIFLLSQENVNVDPWYHLKDCLLEGTL-PFMKAHNAKNPFEYAMKAARRRNLFNQS 101
           + LAP+     +      ++ LK  + E  L  F         +++  K       FN +
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLG-SGFWDFLDKNPEYNTSFNDA 59

Query: 102 MHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA 161
           M + + L+   + +    F+ +  +VDV GG G    ++   +P+++ I FD P V+++ 
Sbjct: 60  MASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119

Query: 162 PSYQGIH 168
                + 
Sbjct: 120 SGSNNLT 126

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 78.1 bits (191), Expect = 9e-19
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 44  SLAPIFLLSQENVNVD-PWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSM 102
                  L+    + D  +  L D +  G   +   +  +  +E         + F+  M
Sbjct: 4   QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYG-RPFWEDLSADVALADSFDALM 62

Query: 103 HNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP 162
                L  +   + Y  +  +  ++DV GG G  ++ +  + P +RG   +L    + A 
Sbjct: 63  SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR 121

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 71.6 bits (174), Expect = 3e-16
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 60  PWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG 119
            +  L D +  G   +   +  K  +E        R  F+  +     +        Y  
Sbjct: 20  SFTRLPDAIRTGRPTYESIYG-KPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77

Query: 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
           +  +  ++DV GG G   + +  + P +     ++   +  A SY
Sbjct: 78  WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSY 122

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 51.0 bits (122), Expect = 1e-09
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNED 41
           ML+LLAS S LT    T +DG   RVYGL+ VG+YL+P+E 
Sbjct: 70  MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 1   MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE 40
           ML+LLA    LTC++ T +DG V R+YGLA+V +YL+ NE
Sbjct: 68  MLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.96
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.93
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.9
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.07
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.94
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.92
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.78
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.73
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.72
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.67
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.63
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.6
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.56
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.55
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.54
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.53
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.49
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.46
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.45
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.41
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.4
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.4
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.39
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.37
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.34
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.32
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.3
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.28
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.26
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.23
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.22
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	97.22
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.2
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.19
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.18
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.18
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.14
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.06
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.05
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.04
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.04
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.0
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.98
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.92
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.83
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	96.82
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	96.8
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	96.8
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	96.78
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	96.76
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.66
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.62
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.53
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.19
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.14
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.08
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.96
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.86
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.84
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.78
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.76
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	95.6
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.54
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.52
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.18
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	95.12
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.94
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	94.73
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	94.68
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.33
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	94.3
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	94.21
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.14
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	93.75
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.65
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	93.57
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.42
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	93.42
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.41
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	92.85
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	92.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	90.39
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	89.17
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	89.02
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	88.82
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	85.7
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	85.19
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	82.51
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	82.5
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	81.88
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	81.84

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=1.8e-29  Score=190.14  Aligned_cols=124  Identities=53%  Similarity=0.961  Sum_probs=114.4

Q ss_pred             CChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Q 030988           43 VSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEE  122 (168)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  122 (168)
                      .|+++++.+..++.+++.|.+|+++||+|+++|+.++| .++|+|+.++|+..+.|+++|...+...++.+++.|+.+++
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G-~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~   81 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYG-MTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG   81 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHS-SCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSS
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcC-CCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccC
Confidence            48999998877778899999999999999999999999 99999999999999999999999998888899999983466


Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCCCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI  167 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~~~  167 (168)
                      ..+|||||||+|.++++++++||+++++++|+|+|++.++..+.|
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~  126 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGV  126 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCce
Confidence            899999999999999999999999999999999999988866543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.95  E-value=1.1e-28  Score=185.76  Aligned_cols=123  Identities=41%  Similarity=0.710  Sum_probs=102.5

Q ss_pred             ChHHHHHhhcCccccccCCcchHHHhcCC-chhHhhcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Q 030988           44 SLAPIFLLSQENVNVDPWYHLKDCLLEGT-LPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEE  122 (168)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~L~~~l~~g~-~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  122 (168)
                      |+++++.++++|.+++.|.+|++++++|. ++|+.++| .++|||+.++|+..++|+++|...+...++.+++.|+.|++
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G-~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG-VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcC-CCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            78999998888999999999999999865 56999999 99999999999999999999999999989999999986799


Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCCCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI  167 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~~~  167 (168)
                      ..+|||||||+|.++++++++||++++|++|+|+|++.+...+.|
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri  126 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGI  126 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCe
Confidence            999999999999999999999999999999999999988765543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.93  E-value=1.2e-26  Score=174.53  Aligned_cols=121  Identities=21%  Similarity=0.413  Sum_probs=108.5

Q ss_pred             ChHHHHHhhcCccccccCCcchHHHhcCC-chhHhhcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHH-cCCCC
Q 030988           44 SLAPIFLLSQENVNVDPWYHLKDCLLEGT-LPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEI-YKGFE  121 (168)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~L~~~l~~g~-~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~-~~~~~  121 (168)
                      |+++++.+.++|.++.+|..|++++|++. ++|+.++| .++|+|+.++|+..++|+++|...+......+.+. ++ |+
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G-~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~   79 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLG-SGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FD   79 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHS-SCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhC-CCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-cc
Confidence            68889988888999999999999999874 68999999 89999999999999999999999988776666553 45 88


Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQG  166 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~~  166 (168)
                      +..+|||||||+|.++++++++||++++++||+|+|++.+...+.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r  124 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNN  124 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTT
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCc
Confidence            999999999999999999999999999999999999998875443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.90  E-value=1.1e-24  Score=164.86  Aligned_cols=118  Identities=16%  Similarity=0.243  Sum_probs=105.6

Q ss_pred             CChHHHHHhhcCcccc-ccCCcchHHHhcCCchhHhhcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC
Q 030988           43 VSLAPIFLLSQENVNV-DPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFE  121 (168)
Q Consensus        43 ~~~~~~~~~~~~~~~~-~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  121 (168)
                      .++++++.+....... .+|.+|.+++|+|+++|+..+| .++|+|+.++|+..+.|+++|...+...++.+++.|| |+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G-~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~   80 (256)
T d1qzza2           3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYG-RPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS   80 (256)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHS-SCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred             HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhC-CCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Cc
Confidence            3788888654222222 3799999999999999999999 9999999999999999999999998888889999999 99


Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      +.++|||||||+|.++.+++++||+++++++|+|++++.++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~  121 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR  121 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHH
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHH
Confidence            99999999999999999999999999999999999998765

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.87  E-value=5.6e-23  Score=154.99  Aligned_cols=103  Identities=15%  Similarity=0.277  Sum_probs=97.3

Q ss_pred             cccCCcchHHHhcCCchhHhhcCCCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHH
Q 030988           58 VDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANI  137 (168)
Q Consensus        58 ~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~  137 (168)
                      ..+|.+|+++||+|+++|..++| .++|+|+.++|+..+.|+++|...+...++.+++.|| |++..+|||||||+|.++
T Consensus        18 ~~~~~~L~~~vr~G~~~~~~~~G-~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~   95 (253)
T d1tw3a2          18 DISFTRLPDAIRTGRPTYESIYG-KPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFA   95 (253)
T ss_dssp             GGGGGGHHHHHHHCCCCHHHHHS-SCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHH
T ss_pred             cccHHHHHHHHHhCCchhhhccC-CCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHH
Confidence            34899999999999999999999 9999999999999999999999988888889999999 999999999999999999


Q ss_pred             HHHHHHCCCCeEEEccchHHHhhCC
Q 030988          138 SLLVSKYPQIRGINFDLPHVIKDAP  162 (168)
Q Consensus       138 ~~l~~~~P~l~~~v~DlP~vi~~a~  162 (168)
                      ..+++++|+++++++|+|++++.++
T Consensus        96 ~~la~~~p~~~~~~~D~~~~~~~a~  120 (253)
T d1tw3a2          96 AAIARRAPHVSATVLEMAGTVDTAR  120 (253)
T ss_dssp             HHHHHHCTTCEEEEEECTTHHHHHH
T ss_pred             HHHHHhcceeEEEEccCHHHHHHHH
Confidence            9999999999999999999888765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.07  E-value=3.4e-06  Score=62.63  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=41.2

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+....+ ++...+|||||||+|.++..+++++ +.+++.+|+ |..++.++
T Consensus        55 ~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~  107 (282)
T d2o57a1          55 LASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNE  107 (282)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhh
Confidence            3445666666 8888999999999999999999875 678999997 66665544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=7.8e-06  Score=59.31  Aligned_cols=50  Identities=14%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.+.+. +....+|||||||+|.++..++++++ .+++.+|+ |..++.++
T Consensus        23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar   73 (245)
T d1nkva_          23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAK   73 (245)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHH
Confidence            35777787 88889999999999999999998876 79999999 66666544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=4e-06  Score=60.16  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHH--CCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSK--YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++..+  .....+|||||||+|..+..+++.  +|+.+++.+|. |..++.|+
T Consensus        32 ~~~~~--~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~   82 (225)
T d1im8a_          32 LAERF--VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR   82 (225)
T ss_dssp             HHHHH--CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHH
T ss_pred             HHHHh--cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHH
Confidence            34444  345579999999999999999986  58999999999 88888775

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=1.8e-05  Score=56.30  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .+.+||||||+|.++..+++.+|+..++.+|. +..+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~   68 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT   68 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHH
Confidence            46899999999999999999999999999996 555543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=2.3e-05  Score=57.77  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +.+..+  ....+|||||||+|.++..+++++|+.+++.+|. |..++.|+
T Consensus        77 l~~~~~--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~  125 (268)
T d1p91a_          77 LRERLD--DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA  125 (268)
T ss_dssp             HHHHSC--TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH
T ss_pred             HHHhcC--CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhh
Confidence            344444  4557999999999999999999999999999998 66666554

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.72  E-value=2.5e-05  Score=55.53  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=34.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+||||||+|.++..+++.+|+..++.+|. +..+..+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a   71 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA   71 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHH
Confidence            346899999999999999999999999999996 5555443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.72  E-value=1.4e-05  Score=57.56  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=38.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      -+++..+ ++...+|||||||+|.++..++++.+  +++.+|+ +..++.|
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A   54 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVA   54 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHH
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhh
Confidence            4678888 99999999999999999999999864  6788997 4455544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.67  E-value=2.1e-05  Score=56.12  Aligned_cols=47  Identities=26%  Similarity=0.396  Sum_probs=38.1

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++..+ ++...+|||||||+|.++..+++..+  +++.+|+ |..++.|
T Consensus         6 ~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A   53 (231)
T d1vl5a_           6 KLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVA   53 (231)
T ss_dssp             HHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHH
T ss_pred             HHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhh
Confidence            5667777 88889999999999999999999865  6778887 5555554

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=57.39  Aligned_cols=47  Identities=9%  Similarity=-0.003  Sum_probs=35.8

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++...  ..-.+|||||||+|..+..+++..| -+++++|+ |.+++.|+
T Consensus        46 la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~   93 (229)
T d1zx0a1          46 LAAAAS--SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLR   93 (229)
T ss_dssp             HHHHHT--TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHH
T ss_pred             HHHhhc--cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHH
Confidence            344444  3346899999999999999998765 37888998 77887765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=3.9e-05  Score=53.99  Aligned_cols=51  Identities=24%  Similarity=0.407  Sum_probs=43.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.++ ......+||+++|+|.++.++++++|+.+++.+|+ |+.++.++
T Consensus        13 ~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~   64 (192)
T d1m6ya2          13 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE   64 (192)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHH
Confidence            45677776 66668999999999999999999999999999998 67777654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.60  E-value=3.5e-05  Score=53.14  Aligned_cols=47  Identities=9%  Similarity=0.031  Sum_probs=37.6

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +...+. .....+|||||||+|..+..++++  +.+++.+|. +..++.++
T Consensus        12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~   59 (201)
T d1pjza_          12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYF   59 (201)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHH
T ss_pred             HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHH
Confidence            344455 677789999999999999999997  789999998 55665544

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.60  E-value=3e-05  Score=54.03  Aligned_cols=48  Identities=23%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++.... .....+|+|||||+|.+++++++..+  +++.+|. |..++.|+
T Consensus        24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~   72 (186)
T d1l3ia_          24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTE   72 (186)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHH
T ss_pred             HHHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHH
Confidence            3555666 77778999999999999999998754  7888898 77776654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=5.6e-05  Score=54.44  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..+. ..+..+|||||||+|.++..++++.  .+++.+|+ |..++.|+
T Consensus        32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~   80 (251)
T d1wzna1          32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVAR   80 (251)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccc
Confidence            4556666 6777899999999999999999974  47888998 56776554

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=4.6e-05  Score=59.51  Aligned_cols=50  Identities=6%  Similarity=0.156  Sum_probs=40.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++..+ +....+|||||||.|..+..+++.+|..+++.+|+ |..++.|
T Consensus       206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~A  256 (406)
T d1u2za_         206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT  256 (406)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            34555565 66668999999999999999999999889999998 4455444

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=7.9e-05  Score=55.22  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|+|+|||+|..++.+++.+|+++++..|. |..++.|+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~  149 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ  149 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH
Confidence            4456899999999999999999999999999998 66666554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=4.5e-05  Score=54.28  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=39.3

Q ss_pred             cCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          117 YKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       117 ~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ++ ++.-.+|||||||+|..+..+++..|+-+++.+|. |..++.++
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~   97 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL   97 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH
Confidence            55 77778999999999999999999999999999998 77776553

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.49  E-value=6.6e-05  Score=54.20  Aligned_cols=42  Identities=7%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ++.-.+|||||||+|..+..+++..|+-+++.+|. |..++.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a  114 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMREL  114 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence            66778999999999999999999999999999998 6665543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.46  E-value=5.7e-05  Score=55.93  Aligned_cols=50  Identities=16%  Similarity=0.204  Sum_probs=39.0

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~  162 (168)
                      +++..-..+...+|||||||+|.++..+++.+|. .+++.+|. |..++.|+
T Consensus        18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~   69 (281)
T d2gh1a1          18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR   69 (281)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH
T ss_pred             HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh
Confidence            4443322567789999999999999999999885 78999998 66666554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.45  E-value=4.4e-05  Score=53.42  Aligned_cols=47  Identities=19%  Similarity=0.207  Sum_probs=36.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++.++ .....+|||||||+|.+++.+++..|+  ++.+|. |..++.++
T Consensus        44 Li~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~   91 (194)
T d1dusa_          44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAK   91 (194)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHH
T ss_pred             HHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHH
Confidence            566676 666789999999999999999999885  566676 66666554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=6.1e-05  Score=55.22  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .|-.+-+..++.+.. ++..+.  ....+|+|||||+|.+++++++.  ..+++.+|. |..++.|+
T Consensus        98 aFGTG~H~TT~l~l~-~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~  159 (254)
T d2nxca1          98 AFGTGHHETTRLALK-ALARHL--RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAE  159 (254)
T ss_dssp             ----CCSHHHHHHHH-HHHHHC--CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHH
T ss_pred             ccCccccchhhHHHH-HHHhhc--CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHH
Confidence            355555555555553 444454  34479999999999999988875  468899998 66676655

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.40  E-value=0.00018  Score=50.60  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=35.4

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .++..+  +....+|||||||+|.++..+++.  +.+++.+|. |..++.|+
T Consensus        29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak   76 (226)
T d1ve3a1          29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAR   76 (226)
T ss_dssp             HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhh
Confidence            345444  344569999999999999999985  668899998 66665554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.40  E-value=9.5e-05  Score=51.64  Aligned_cols=46  Identities=20%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +++... +....+|||||||+|..+..++++.  .+++.+|. |..++.+
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a   68 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANL   68 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHH
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHH
Confidence            444444 5555799999999999999999984  57888998 4556543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00013  Score=55.22  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ..+++.+. .....+|+|||||.|.++..+++.+|..+++.+|+ |..++.
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~  190 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKY  190 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            46777777 78788999999999999999999999999999997 444443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.37  E-value=0.00016  Score=52.45  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.|.  +...+|||||||+|..+..+++..+ -+++.+|+ |..++.|+
T Consensus        15 ~~lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~   64 (252)
T d1ri5a_          15 ACLIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDAR   64 (252)
T ss_dssp             HHHHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHH
T ss_pred             HHHHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHH
Confidence            34677774  5568999999999999999988744 36888998 55666553

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=4.7e-05  Score=54.23  Aligned_cols=42  Identities=14%  Similarity=0.107  Sum_probs=34.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .....+|||||||+|.++..+++..+. +++.+|. |..++.|+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak  100 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAK  100 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccc
Confidence            445679999999999999999887764 7888998 77776654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=0.00011  Score=54.43  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=39.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+++.++ ++...+|||||||.|.++..++++++ .+++.+|+ ++.++.+
T Consensus        42 ~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a   91 (280)
T d2fk8a1          42 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARC   91 (280)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHH
Confidence            46778887 88889999999999999999888875 59998888 4444433

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=0.00011  Score=54.37  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ..+..+|||||||+|.++..++++  +.+++.+|+ |..++.|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A   94 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYA   94 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHH
Confidence            345579999999999999999987  678999998 5555544

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.28  E-value=0.00015  Score=52.99  Aligned_cols=64  Identities=13%  Similarity=0.121  Sum_probs=40.3

Q ss_pred             HHHHHHHhhHHHH----HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988           98 FNQSMHNHAALVM----KKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        98 f~~~m~~~~~~~~----~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |...|...++...    ..++...+ ...-.+|||+|||+|.++..++++ .|+-+++.+|. ++-++.|+
T Consensus        58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~  127 (250)
T d1yb2a1          58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM  127 (250)
T ss_dssp             HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH
T ss_pred             HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence            4555655555432    24556666 777799999999999999999987 68899999997 44555544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.26  E-value=0.0001  Score=53.77  Aligned_cols=49  Identities=14%  Similarity=0.211  Sum_probs=38.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++.++ .....++||||||+|.++..+++.+++ +++.+|. |..++.|+
T Consensus        84 ~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~  133 (254)
T d1xtpa_          84 NFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAK  133 (254)
T ss_dssp             HHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHH
T ss_pred             HHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhh
Confidence            4566666 667789999999999999999988766 7778887 66666654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.23  E-value=7.4e-05  Score=53.87  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|||||||+|.++..++++..  +++.+|+ |..++.|+
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~   76 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAE   76 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHH
T ss_pred             CCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcc
Confidence            47899999999999999999854  7888998 55565543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.00011  Score=52.32  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++.  ..+++.+|. |..++.|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~   81 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAR   81 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccc
Confidence            45579999999999999999886  678999998 66776654

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.22  E-value=2.6e-05  Score=47.68  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=28.2

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE   40 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~   40 (168)
                      +||+|+++|+|++.   +     ++.|++|+.|+.|++|+
T Consensus        54 lLr~l~a~gl~~e~---~-----~~~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          54 LIRHLVAIGLLEED---A-----PGEFVPTEVGELLADDH   85 (85)
T ss_dssp             HHHHHHHTTSEEEE---E-----TTEEEECTTGGGGSTTS
T ss_pred             HHHHHHHCCCeEec---C-----CCeEecCHHHHHhhcCC
Confidence            58999999999986   2     78999999999998764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.20  E-value=0.00013  Score=51.98  Aligned_cols=41  Identities=17%  Similarity=0.141  Sum_probs=33.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....+|||||||+|.++..++++..  +++.+|. |..++.++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~   59 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQ   59 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhh
Confidence            44556899999999999999998864  5888898 66777664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.00024  Score=52.83  Aligned_cols=48  Identities=23%  Similarity=0.297  Sum_probs=39.5

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ..+++... .+.-.+|||||||.|..++.+++.++ ++++.+++ |..++.
T Consensus        52 ~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~  100 (285)
T d1kpga_          52 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANH  100 (285)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHH
T ss_pred             HHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHH
Confidence            46777787 88889999999999999999999995 79988887 444443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00032  Score=51.57  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             HHHHHHHhhHH----HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988           98 FNQSMHNHAAL----VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        98 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |...|...++.    .+..++...+ .....+|||+|||+|.++..+++.. |+-+++.+|. |+.++.|+
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~  145 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE  145 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence            34455544442    2335777888 8888999999999999999999875 8999999997 66776654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00022  Score=50.71  Aligned_cols=50  Identities=12%  Similarity=0.213  Sum_probs=41.0

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .+...+|+|||||+|.++..+++.. |+-+++.+|. |..++.|+
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~  117 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK  117 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhh
Confidence            4566777 8888999999999999999998875 6788988886 66666654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00036  Score=51.24  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             HHHHHHHhhHH----HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988           98 FNQSMHNHAAL----VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus        98 f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      |...|...++.    .+..++...+ .+.-.+|||+|||+|.++..++++ .|+-+++.+|. |+.++.|+
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar  138 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR  138 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH
T ss_pred             HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHH
Confidence            44455554442    2345777788 888899999999999999999998 79999999997 66666654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00013  Score=53.24  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+++|||+|+|..++.+++++|+++++..|. |..++.|+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~  102 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK  102 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH
Confidence            457999999999999999999999999999998 66666554

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00057  Score=50.81  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP  155 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP  155 (168)
                      ..+++... ++.-.+|||||||.|.+++.++++++ .+++.+++-
T Consensus        51 ~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s   93 (291)
T d1kpia_          51 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLS   93 (291)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESC
T ss_pred             HHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccch
Confidence            46778888 88889999999999999999999997 588888873

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00039  Score=49.55  Aligned_cols=44  Identities=7%  Similarity=0.021  Sum_probs=35.7

Q ss_pred             HHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          115 EIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      +... .....+|||+|||.|..+..+++.  +.++|.+|. |..|+.+
T Consensus        39 ~~l~-~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a   83 (229)
T d2bzga1          39 TFLK-GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEF   83 (229)
T ss_dssp             HHHT-TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHH
T ss_pred             HhcC-CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHH
Confidence            3344 566689999999999999999986  789999998 6666654

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.04  E-value=4.8e-05  Score=48.00  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=27.7

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE   40 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~   40 (168)
                      |||+|+++|+|+++.   +   ++++|+||+.|+.|+++.
T Consensus        67 lLR~L~~~gi~~~~~---~---~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          67 LMRYLAHNGFFEIIT---K---EEESYALTVASELLVRGS  100 (101)
T ss_dssp             HHHHHHHTTSEEEEE---S---SSEEEEECHHHHTTSTTS
T ss_pred             HHHHHHhCCceeeec---C---CCCeEecCHHHHHhhcCC
Confidence            589999999998752   1   167999999999888764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.00  E-value=0.00022  Score=50.17  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +++ ++|||+|||+|.++++++...+. +++.+|. |..++.++
T Consensus        47 l~G-k~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar   88 (197)
T d1ne2a_          47 IGG-RSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAK   88 (197)
T ss_dssp             SBT-SEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHH
T ss_pred             CCC-CEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHH
Confidence            665 79999999999999988886554 6888887 66666544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00042  Score=48.32  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=25.2

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+|||||||+|.++..+.+      .+.+|. |..++.++
T Consensus        38 ~~vLDiGcG~G~~~~~~~~------~~giD~s~~~~~~a~   71 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIAR   71 (208)
T ss_dssp             SCEEEETCTTSTTHHHHTC------CEEEESCHHHHHHHH
T ss_pred             CeEEEECCCCcccccccce------EEEEeCChhhccccc
Confidence            4899999999999888743      467787 66666554

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.92  E-value=6.4e-05  Score=47.82  Aligned_cols=40  Identities=55%  Similarity=0.925  Sum_probs=29.8

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE   40 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~   40 (168)
                      |||+|++.|+|+......+||+...+|++||.|+.|++++
T Consensus        68 ilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk~Lv~de  107 (107)
T d1kyza1          68 MLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE  107 (107)
T ss_dssp             HHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHSCCT
T ss_pred             HHHHHHhcCceEEeeecCCCCCeeeEEecchhHHhhcCCC
Confidence            5899999999987532222344455799999999998763

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0013  Score=48.90  Aligned_cols=38  Identities=13%  Similarity=0.144  Sum_probs=30.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHH
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVI  158 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi  158 (168)
                      ....++|||||||+|.+++.++++.+ -+++.+|.-+..
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~   70 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEIL   70 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHH
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHH
Confidence            44457999999999999999999865 378888875543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.82  E-value=0.00044  Score=48.64  Aligned_cols=47  Identities=11%  Similarity=-0.012  Sum_probs=34.1

Q ss_pred             HHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          114 LEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       114 ~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +....++++ .+|||+|||+|.++++++.+.+ .+++.+|. |..++.++
T Consensus        39 ~~~~~dl~g-~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~   86 (201)
T d1wy7a1          39 AYSLGDIEG-KVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLI   86 (201)
T ss_dssp             HHHTTSSTT-CEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHH
T ss_pred             HHhcCCCCC-CEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHH
Confidence            334443555 6999999999999999887644 58888887 55655443

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.80  E-value=0.00016  Score=46.05  Aligned_cols=40  Identities=58%  Similarity=0.855  Sum_probs=29.9

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCCCC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE   40 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~   40 (168)
                      |||+|++.++|......+++|+....|++|+.|+.|++++
T Consensus        70 iLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          70 MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             HHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             HHHHHHHcCccccccccCCCCCeeeEEecchhhHhhcCCC
Confidence            5899999999986532222343455799999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.00065  Score=51.09  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA  161 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a  161 (168)
                      .++|||||||+|.++..++++... +++.+|..+.++.+
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~~~~~a   76 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSSIIEMA   76 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS-EEEEEESSTHHHHH
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence            379999999999999988886443 78889987655444

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.0006  Score=51.08  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=28.7

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      .++|||||||+|.+++.++++.+. +++.+|..+...
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~   69 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISD   69 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHH
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHh
Confidence            378999999999999999887554 788889755433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.76  E-value=0.0012  Score=44.10  Aligned_cols=39  Identities=13%  Similarity=0.039  Sum_probs=31.8

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ...+|||+|||+|.++++.+.+-+. +++.+|. |..++.+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~   53 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAII   53 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHH
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhh
Confidence            3479999999999999999888664 8899998 6665543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0014  Score=49.37  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhHH----HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhC
Q 030988           97 LFNQSMHNHAAL----VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus        97 ~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .|...|...++.    -+..++...+ ...-.+|||+|||+|.++..++++ .|+-+++-+|. |+.++.|
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A  139 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA  139 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHH
Confidence            355566655442    2346778888 888899999999999999999987 68999999997 5555543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00093  Score=48.80  Aligned_cols=40  Identities=15%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             CCCCeEEEecCCccHHHHHHH----HHCCCCe--EEEccc-hHHHhh
Q 030988          121 EEINQLVDVAGGLGANISLLV----SKYPQIR--GINFDL-PHVIKD  160 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~----~~~P~l~--~~v~Dl-P~vi~~  160 (168)
                      +...+|||||||+|.++..++    ..+|+..  .+.+|. +..++.
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~   85 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK   85 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHH
Confidence            334579999999998866654    4577765  578886 344443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.002  Score=45.88  Aligned_cols=50  Identities=20%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             HHHHHcC-CCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYK-GFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~-~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.+. ..+.-.+|||||||+|..+..+++. .|.-+++.+|. |+.++.|
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a  117 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS  117 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence            4555552 1566789999999999988888774 68889998896 6666654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.19  E-value=0.0014  Score=49.05  Aligned_cols=43  Identities=19%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      +..++||.||||.|..+.++++..|..+++++|+ |.|++.++.
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~  119 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKR  119 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHh
Confidence            5668999999999999999999888889999998 888887653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.14  E-value=0.0025  Score=43.34  Aligned_cols=39  Identities=15%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|+|+|||+|.++++++++  ..+++.+|. |..++.+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~   79 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLL   79 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHH
T ss_pred             cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhh
Confidence            44469999999999999998887  457888898 6666544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.08  E-value=0.0015  Score=48.10  Aligned_cols=43  Identities=14%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++|+-||||.|..+.++++ +|..+++++|+ |.|++.++.+
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~  114 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDL  114 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHh
Confidence            5668999999999999999987 67779999998 8899887643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0013  Score=47.09  Aligned_cols=41  Identities=12%  Similarity=-0.002  Sum_probs=29.4

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.++..+++... -+++.+|+ |..++.|+
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~   91 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE   91 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHH
Confidence            3457999999999988876655432 26899998 55665543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.0031  Score=46.28  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=33.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...+++|+|||+|..++.++ .+|+.+++..|. |..++.|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~  150 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIAR  150 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHH
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHH
Confidence            34689999999999999987 579999999997 66665544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.84  E-value=0.0027  Score=46.65  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=37.9

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++|+-||||.|..+.++++..|..+++++|+ |.|++.++.+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~  118 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKF  118 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHh
Confidence            4568999999999999999998777789999998 8898887643

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.78  E-value=0.0045  Score=44.15  Aligned_cols=42  Identities=10%  Similarity=0.134  Sum_probs=35.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a  161 (168)
                      ++.-.+|+|+|||+|.++..+++.- |+=+++.+|. |..++.+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a  114 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLREL  114 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence            6677899999999999999999986 8889999997 5555543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0029  Score=46.74  Aligned_cols=45  Identities=13%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      -...++|+-||||.|..+.++++..|..++++.|+ |.|++.++.+
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~  121 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKF  121 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhh
Confidence            35678999999999999999998777889999998 8899887643

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.60  E-value=0.0012  Score=40.59  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=25.4

Q ss_pred             CccccccCCcccceeecCCCCccccceecchhccccCC
Q 030988            1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLP   38 (168)
Q Consensus         1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~   38 (168)
                      +||+|+++|||++.    +++  .+.|++|+.|+.|.+
T Consensus        60 Llr~L~a~gll~~~----~d~--~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          60 LVRHLTVVGVLEGG----EKQ--GRPLRPTRLGMLLAD   91 (92)
T ss_dssp             HHHHHHHTTSEECC----CC---CCCCEECTTGGGGST
T ss_pred             HHHHHHHCCCeeee----cCC--CceecccHHHHhccC
Confidence            58999999999996    211  457999999998875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.54  E-value=0.0042  Score=46.42  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=37.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++|+-||||.|..+.++++..|-.+++++|+ |.|++.++.+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~  149 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKF  149 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhh
Confidence            4568999999999999999999767678999998 8899887643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.004  Score=46.21  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS  163 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~  163 (168)
                      ...++|+=||||.|..+.++++..|..+++++|+ |.|++.++.
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~  131 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARK  131 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHH
Confidence            4568999999999999999999777788999998 889987764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0062  Score=41.75  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      .+|||++||+|.++++.+.+-.. +++.+|. +..++.
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~   81 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQ   81 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHH
T ss_pred             hhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhH
Confidence            58999999999999999998665 7888887 445543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.18  E-value=0.0072  Score=43.87  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      ....+|||+|||+|.+++.++++ +..+++..|+ |..++.+
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~  146 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFL  146 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHH
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHH
Confidence            45579999999999999999986 5568999998 6665544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=95.12  E-value=0.012  Score=41.97  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                      ...+++..+ .+...+|++||+|+|.+...+++....+.++=.|
T Consensus        10 ~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D   52 (235)
T d1qama_          10 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID   52 (235)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeec
Confidence            346677777 7788999999999999999999985544444333

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.00  E-value=0.0078  Score=44.43  Aligned_cols=44  Identities=9%  Similarity=0.138  Sum_probs=37.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY  164 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~  164 (168)
                      ...++|+=||||.|..+.++++..|-.+++++|+ |.|++.++.+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~  123 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQF  123 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHH
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHh
Confidence            5678999999999999999999777678999998 8888887643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.94  E-value=0.016  Score=41.05  Aligned_cols=47  Identities=11%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++..+ .+...+|||||||+|.++..+++.-  -+++.+|. |..++.|
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A  108 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYA  108 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHH
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHH
Confidence            3567777 8888899999999999988888774  45666664 5555443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.73  E-value=0.035  Score=39.15  Aligned_cols=49  Identities=14%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             HHHHHc--CCCCCCCeEEEecCCccHHHHHHHHH------CCCCeEEEccc-hHHHhhC
Q 030988          112 KILEIY--KGFEEINQLVDVAGGLGANISLLVSK------YPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       112 ~~~~~~--~~~~~~~~vvDvGGg~G~~~~~l~~~------~P~l~~~v~Dl-P~vi~~a  161 (168)
                      .+++.+  + .....+|||||+|+|.++..+++.      ++..+++.+|. ++.++.+
T Consensus        69 ~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a  126 (223)
T d1r18a_          69 FALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS  126 (223)
T ss_dssp             HHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHH
Confidence            355555  4 677789999999999888777665      46678877775 5554443

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0033  Score=45.55  Aligned_cols=41  Identities=12%  Similarity=-0.023  Sum_probs=29.1

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ....+|||||||+|.+....+..+.. +++..|. |..++.++
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELG   94 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHH
Confidence            34579999999999887554444433 7899997 55666543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.045  Score=37.27  Aligned_cols=48  Identities=23%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 030988          109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPH  156 (168)
Q Consensus       109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~  156 (168)
                      ..-.+-+.|.-++...+|||||+++|.++..+++.- +.-+++.+|+-+
T Consensus         9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~   57 (180)
T d1ej0a_           9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence            334677778745777899999999999999888754 446788888743

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=94.30  E-value=0.0076  Score=43.42  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=33.6

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ..+++..+ .+...+||+||+|+|.+...+++.-+  +++.+|.
T Consensus        19 ~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~   59 (245)
T d1yuba_          19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIEL   59 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSS
T ss_pred             HHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeee
Confidence            46778787 78888999999999999999999844  5666665

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.21  E-value=0.013  Score=41.99  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      +....+++|||.|.|.=++-++=.+|+++++++|-
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves  102 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDS  102 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEES
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecc
Confidence            44567999999999998888888899999999984

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.03  Score=39.13  Aligned_cols=33  Identities=21%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+++|||.|.|.=++-++-.+|+.+++++|-
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves   97 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDS   97 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEES
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEec
Confidence            346999999999998888888999999999994

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.75  E-value=0.062  Score=36.47  Aligned_cols=38  Identities=18%  Similarity=0.118  Sum_probs=29.7

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD  160 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~  160 (168)
                      ...+|||+.+|+|.++++.+.+-.. +++.+|. +..++.
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~   79 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKV   79 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHH
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHH
Confidence            4479999999999999999998654 6777886 444443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.65  E-value=0.077  Score=36.38  Aligned_cols=42  Identities=7%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCC-eEEEccc
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQI-RGINFDL  154 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl  154 (168)
                      -+++..+ .....+|+|.|||+|.++.++.++++.. +...+|.
T Consensus        10 ~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei   52 (223)
T d2ih2a1          10 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEI   52 (223)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEES
T ss_pred             HHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeec
Confidence            3555555 5556799999999999999999888774 4677776

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.57  E-value=0.054  Score=36.94  Aligned_cols=49  Identities=18%  Similarity=0.233  Sum_probs=39.7

Q ss_pred             HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+++.+. ......+||...|.|.++.+++++  +.+++.+|+ |..++.++
T Consensus         8 ~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~   57 (182)
T d1wg8a2           8 QEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAK   57 (182)
T ss_dssp             HHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHh
Confidence            45666666 566689999999999999999997  568999998 77776654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.42  E-value=0.035  Score=38.81  Aligned_cols=42  Identities=7%  Similarity=0.087  Sum_probs=33.7

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ...++||+||+|.|..++.++++.| +-+++.+|. |..++.++
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~   98 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ   98 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH
Confidence            3457999999999999999999876 578999997 45555443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.05  Score=39.70  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                      +..+++..+ .....+|+.||.|.|.+...++++.+.+.++=.|
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D   52 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD   52 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc
Confidence            456777777 7777899999999999999999997766666555

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.41  E-value=0.044  Score=38.40  Aligned_cols=49  Identities=20%  Similarity=0.286  Sum_probs=35.2

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+++..+ .+...+|+|||+|+|..+.-+++.. +-+++.+|. |+.++.++
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~  118 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAK  118 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHH
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHH
Confidence            4566777 8888899999999999988777653 344555554 66665544

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.07  E-value=0.037  Score=41.12  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      +...+|||++||+|.+++.+++..+. +++.+|+ |..++.++
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~  185 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAK  185 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHH
T ss_pred             CCCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHH
Confidence            45679999999999999999987543 7999998 66666554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=92.85  E-value=0.06  Score=38.66  Aligned_cols=41  Identities=12%  Similarity=-0.045  Sum_probs=30.8

Q ss_pred             HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988          112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus       112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                      .+.+.+- +.....|||+|||+|.++.-+++.-+..++..+|
T Consensus        57 ~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~   97 (257)
T d2p41a1          57 WFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLT   97 (257)
T ss_dssp             HHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEEC
T ss_pred             HHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEE
Confidence            4555564 7777799999999999999999886665544333

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.07  Score=38.26  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988          110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD  153 (168)
Q Consensus       110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D  153 (168)
                      ...+++..+ ......||.||+|.|.+...+++....+.++=.|
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD   52 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD   52 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec
Confidence            346777777 7777899999999999999999986655555555

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.12  Score=36.18  Aligned_cols=43  Identities=12%  Similarity=0.094  Sum_probs=34.6

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+.++||+||+++|.-++.++++-| +-+.+.+|. |+..+.|+
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~  101 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR  101 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH
Confidence            34578999999999999999999987 678888887 45555444

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=89.17  E-value=0.21  Score=36.54  Aligned_cols=42  Identities=14%  Similarity=0.180  Sum_probs=30.2

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHH-----CCCCeEEEccc-hHHHhhC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSK-----YPQIRGINFDL-PHVIKDA  161 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~-----~P~l~~~v~Dl-P~vi~~a  161 (168)
                      -....+|+|.+||+|.++.++.++     .++.+.+.+|. |..+..|
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a  162 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA  162 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHH
Confidence            345578999999999999998754     34556778887 4444433

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=89.02  E-value=0.092  Score=38.82  Aligned_cols=38  Identities=16%  Similarity=0.047  Sum_probs=29.8

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      ..+|+|++||+|.+++++++.  ..+++.+|. |..++.++
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~  184 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAE  184 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHH
T ss_pred             CCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHH
Confidence            479999999999999998865  457888887 55555544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.82  E-value=0.21  Score=36.80  Aligned_cols=41  Identities=12%  Similarity=0.054  Sum_probs=32.3

Q ss_pred             CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988          120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+...+|||+.||+|.+++.+++.  ..++|.+|. +..++.|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~  171 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAK  171 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHH
Confidence            344579999999999999999886  568999997 55655554

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=85.70  E-value=1.2  Score=32.25  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988           97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus        97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      .+...+...+++. +.++..+- -.+..+||.+|+|.=.-...+ ...++++.+=+|+|+|++
T Consensus        66 ~~~~~~~~Rtr~~-D~~~~~~~-~~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~  125 (297)
T d2uyoa1          66 HMRSYQAVRTNFF-DTYFNNAV-IDGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLA  125 (297)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHH-HTTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHH
T ss_pred             hhhhHHHHHHHHH-HHHHHHHH-hhCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHH
Confidence            3444445544544 33433332 256678999999877766555 346788999999999987

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=85.19  E-value=0.43  Score=31.98  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=26.1

Q ss_pred             CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      .++||+-+|+|.++++.+.+-.. +++.+|.
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~-~v~fVE~   74 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAK-KVTFLEL   74 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS-EEEEECS
T ss_pred             ceEeecccCccceeeeeeeecce-eeEEeec
Confidence            48999999999999999998654 7788886

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.51  E-value=1.1  Score=32.91  Aligned_cols=37  Identities=16%  Similarity=0.347  Sum_probs=33.9

Q ss_pred             CCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988          123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK  159 (168)
Q Consensus       123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~  159 (168)
                      ..+||-+|||.=...-.+...+|+++.+=+|+|+|++
T Consensus        97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~  133 (328)
T d1rjda_          97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVE  133 (328)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHH
T ss_pred             CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHH
Confidence            4689999999999888898899999999999999987

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=82.50  E-value=1.1  Score=33.26  Aligned_cols=50  Identities=8%  Similarity=0.157  Sum_probs=35.0

Q ss_pred             hcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC
Q 030988           90 KAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY  144 (168)
Q Consensus        90 ~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~  144 (168)
                      +.|+....|-+..+..   . ..+..... -....+||.+|+|+|.++..+++..
T Consensus        52 Tsp~is~~Fg~~ia~~---~-~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l  101 (365)
T d1zkda1          52 TSPEISQMFGELLGLW---S-ASVWKAAD-EPQTLRLIEIGPGRGTMMADALRAL  101 (365)
T ss_dssp             SHHHHCHHHHHHHHHH---H-HHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHH---H-HHHHHHhC-CCccceEEecCCcccHHHHhhhhhh
Confidence            5688888888876432   2 23444454 4455689999999999998887654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=81.88  E-value=0.67  Score=32.32  Aligned_cols=42  Identities=7%  Similarity=0.029  Sum_probs=33.6

Q ss_pred             CCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988          121 EEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP  162 (168)
Q Consensus       121 ~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~  162 (168)
                      .+.++||.||.+.|.-++.++++.| +-+++.+|. |...+.|+
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~  101 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL  101 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH
Confidence            4568999999999999999999988 468888886 55554443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.84  E-value=1.1  Score=32.71  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988          122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL  154 (168)
Q Consensus       122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl  154 (168)
                      ...+||+||.|.|.+..+++++.---+.++++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~   75 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK   75 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEEC
Confidence            346899999999999999998732235666654