Citrus Sinensis ID: 031005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Secondary Structure (PSIPRED)
ccccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccccccccccccccHHHHHccccccEEEccccccccccccccccHHHHHcccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHcccEEEccccccccccHHHHHHHHcccEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mtldgnritslpdelGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSnnklkslpesigscysleelqandnligelPASICNLIHLKSlclnnnnigqipANLLKDCKALqnislhnnpismdqfQQMEGFEEFEARRRKKFdkqidsnvmisskglnegvdk
Flexible Loop (DISEMBL)
mtldgnritslpdelgQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKkfdkqidsnvmisskglnegvdk
Low Complexity Region (SEG)
MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRnlvllnvsnnklkslPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDqfqqmegfeefeARRRKKFDKQIDSNVMISSKGLNEGVDK
Disordered region (IsUnstruct)
*************ELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN*********************************************
Disordered Region (DISOPRED)
MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDK************LNE****
Disordered Region (DISEMBL)
MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Disordered Region (DISPRO)
**L*GNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRR************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
P0C895	374	LRR repeats and ubiquitin	no	no	0.994	0.443	0.401	2e-29
B4N9T4	641	Leucine-rich repeat prote	N/A	no	0.742	0.193	0.408	2e-14
B4IBI9	683	Leucine-rich repeat prote	N/A	no	0.742	0.181	0.4	3e-14
B4QVR7	680	Leucine-rich repeat prote	N/A	no	0.742	0.182	0.4	3e-14
B4PU77	645	Leucine-rich repeat prote	N/A	no	0.742	0.192	0.4	3e-14
Q9VEK6	641	Leucine-rich repeat prote	yes	no	0.742	0.193	0.4	3e-14
Q5F4C4	529	Leucine-rich repeat prote	yes	no	0.742	0.234	0.408	3e-14
B3P3E8	644	Leucine-rich repeat prote	N/A	no	0.742	0.192	0.4	4e-14
Q9HB75	910	p53-induced protein with	yes	no	0.640	0.117	0.388	4e-14
P49606	2493	Adenylate cyclase OS=Usti	N/A	no	0.485	0.032	0.487	4e-14

>sp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 1/167 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           +++  N +T LP  +G L  L +L +  N LT LP  +G L  L +L  +NN++ SLPES
Sbjct: 207 LSISHNNLTVLPSAMGSLTSLRQLDVTNNKLTSLPNELGLLTQLEILKANNNRITSLPES 266

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C  L E+  + N+I ELP +   L +LK+L LNN  +  +P+ L K C  L  + LH
Sbjct: 267 IGNCSFLMEVDLSANIISELPETFTKLRNLKTLELNNTGLKTLPSALFKMCLQLSTLGLH 326

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK 167
           N  I+++  +Q EG+++F+ RRR K  KQ+D  V + S   +EG DK
Sbjct: 327 NTEITVEFLRQFEGYDDFDERRRTKHQKQLDFRV-VGSGQFDEGADK 372

Arabidopsis thaliana (taxid: 3702)

>sp|B4N9T4|SUR8_DROWI Leucine-rich repeat protein soc-2 homolog OS=Drosophila willistoni GN=Sur-8 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 257 LYLRFNRITTVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 316

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L L  N +  +PA+ LK+CK++   ++ 
Sbjct: 317 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGLRYNRLTSVPAS-LKNCKSMDEFNVE 375

Query: 121 NNPIS 125
            N I+
Sbjct: 376 GNGIT 380

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila willistoni (taxid: 7260)

>sp|B4IBI9|SUR8_DROSE Leucine-rich repeat protein soc-2 homolog OS=Drosophila sechellia GN=Sur-8 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 260 LYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 319

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L +  N +  +PA  LK+CK++   ++ 
Sbjct: 320 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPAT-LKNCKSMDEFNVE 378

Query: 121 NNPIS 125
            N I+
Sbjct: 379 GNGIT 383

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila sechellia (taxid: 7238)

>sp|B4QVR7|SUR8_DROSI Leucine-rich repeat protein soc-2 homolog OS=Drosophila simulans GN=Sur-8 PE=3 SV=2

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 257 LYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 316

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L +  N +  +PA  LK+CK++   ++ 
Sbjct: 317 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPAT-LKNCKSMDEFNVE 375

Query: 121 NNPIS 125
            N I+
Sbjct: 376 GNGIT 380

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila simulans (taxid: 7240)

>sp|B4PU77|SUR8_DROYA Leucine-rich repeat protein soc-2 homolog OS=Drosophila yakuba GN=Sur-8 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 261 LYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 320

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L +  N +  +PA  LK+CK++   ++ 
Sbjct: 321 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPAT-LKNCKSMDEFNVE 379

Query: 121 NNPIS 125
            N I+
Sbjct: 380 GNGIT 384

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila yakuba (taxid: 7245)

>sp|Q9VEK6|SUR8_DROME Leucine-rich repeat protein soc-2 homolog OS=Drosophila melanogaster GN=Sur-8 PE=2 SV=3

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 257 LYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 316

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L +  N +  +PA  LK+CK++   ++ 
Sbjct: 317 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPAT-LKNCKSMDEFNVE 375

Query: 121 NNPIS 125
            N I+
Sbjct: 376 GNGIT 380

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila melanogaster (taxid: 7227)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++  ++  L +L  LSI  N +  LP  IG L NL+ L+V++N+L+ LPE 
Sbjct: 197 LYLRFNRITTVEKDIKTLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEE 256

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IGSC  +  L    N + +LP +I NL  L  L L  N +  IP +L K C  L  ++L 
Sbjct: 257 IGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAK-CSELDELNLE 315

Query: 121 NNPIS 125
           NN IS
Sbjct: 316 NNNIS 320

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

>sp|B3P3E8|SUR8_DROER Leucine-rich repeat protein soc-2 homolog OS=Drosophila erecta GN=Sur-8 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  NRIT++ D+L QLV L  LS+  N +  L   IG+L NL  L+VS+N L+ LPE 
Sbjct: 260 LYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPED 319

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IG+C +L  L    N + ++P SI NL  L  L +  N +  +PA  LK+CK++   ++ 
Sbjct: 320 IGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLNSVPAT-LKNCKSMDEFNVE 378

Query: 121 NNPIS 125
            N I+
Sbjct: 379 GNGIT 383

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila erecta (taxid: 7220)

>sp|Q9HB75|PIDD_HUMAN p53-induced protein with a death domain OS=Homo sapiens GN=PIDD PE=1 SV=2

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 64/108 (59%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           +T+  NR+ +LP  LG L  L+RL +  N+L  LP  IG L +L+ LN+++N+L+SLP S
Sbjct: 176 LTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPAS 235

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLL 108
           +    SL  L  + NL+  +PA +  L  L  L L +N +  +P  LL
Sbjct: 236 LAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPPELL 283

Promotes apoptosis downstream of the tumor suppressor as component of the DNA damage/stress response pathway that connects p53/TP53 to apoptosis. Associates with NEMO/IKBKG and RIP1 and enhances sumoylation and ubiquitination of NEMO/IKBKG which is important for activation of the transcription factor NF-kappa-B. Associates with CASP2/caspase-2 and CRADD/RAIDD, and induces activation of CASP2 which an important regulator in apoptotic pathways.

Homo sapiens (taxid: 9606)

>sp|P49606|CYAA_USTMA Adenylate cyclase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UAC1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 53/82 (64%)

Query: 1    MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
            +TLDGN++  LPD LG L RLE LS   N+L  LPE+IG L+ L  L V NN LK+LP++
Sbjct: 1367 LTLDGNQLVVLPDTLGDLKRLEMLSCSNNLLATLPESIGDLKALKELLVHNNNLKTLPQT 1426

Query: 61   IGSCYSLEELQANDNLIGELPA 82
            +  C SL  +  + NL+   PA
Sbjct: 1427 LWLCESLAHINLSSNLLESFPA 1448

Plays essential roles in regulation of cellular metabolism by catalyzing the synthesis of a second messenger, cAMP.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
356516843	263	PREDICTED: LRR repeats and ubiquitin-lik	0.994	0.631	0.855	1e-76
356516841	261	PREDICTED: LRR repeats and ubiquitin-lik	0.994	0.636	0.855	2e-76
356508506	261	PREDICTED: LRR repeats and ubiquitin-lik	0.994	0.636	0.849	1e-75
449440830	261	PREDICTED: LRR repeats and ubiquitin-lik	0.988	0.632	0.837	4e-75
388493638	261	unknown [Medicago truncatula]	0.970	0.620	0.825	5e-75
449477156	261	PREDICTED: LRR repeats and ubiquitin-lik	0.988	0.632	0.837	5e-75
224133032	279	predicted protein [Populus trichocarpa]	0.994	0.594	0.816	7e-75
255645835	261	unknown [Glycine max]	0.994	0.636	0.843	1e-74
255547259	263	leucine-rich repeat containing protein,	0.988	0.627	0.825	5e-73
297810893	262	leucine-rich repeat family protein [Arab	1.0	0.637	0.772	1e-67

>gi|356516843|ref|XP_003527102.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 2 [Glycine max]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/166 (85%), Positives = 155/166 (93%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGNRITSLPDELGQLVRLER+SI GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES
Sbjct: 97  MNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPES 156

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC+SLEELQANDNLI +LP+S+CNL HLKSLCL+NNN+ QIP NLLKDCKALQNISLH
Sbjct: 157 VGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLH 216

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPISMDQFQ MEGF+EFEARR+KKFDKQIDSNVMI SKGL+EGVD
Sbjct: 217 ANPISMDQFQLMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVD 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516841|ref|XP_003527101.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 1 [Glycine max]

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/166 (85%), Positives = 155/166 (93%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGNRITSLPDELGQLVRLER+SI GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES
Sbjct: 95  MNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC+SLEELQANDNLI +LP+S+CNL HLKSLCL+NNN+ QIP NLLKDCKALQNISLH
Sbjct: 155 VGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPISMDQFQ MEGF+EFEARR+KKFDKQIDSNVMI SKGL+EGVD
Sbjct: 215 ANPISMDQFQLMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508506|ref|XP_003522997.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Glycine max]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/166 (84%), Positives = 154/166 (92%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGNRITSLPDELGQLVRLER+SI GN+LT LP TIGSLRNLVLLNVSNNKL+SLPES
Sbjct: 95  MNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC+SLEELQANDNLI +LP+ +CNL HLKSLCL+NNN+ QIP NLLKDC ALQNISLH
Sbjct: 155 VGSCFSLEELQANDNLIEDLPSLVCNLSHLKSLCLDNNNVKQIPLNLLKDCIALQNISLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPISMDQFQQMEGF+EFEARR+KKFDKQIDSNVMI SKGL+EGVD
Sbjct: 215 GNPISMDQFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440830|ref|XP_004138187.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Cucumis sativus]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 157/166 (94%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGN IT+LPDELGQLVRLERLS+  N+L+ LPETIGSLRNL+L+NVSNNKLKSLPES
Sbjct: 95  MILDGNHITTLPDELGQLVRLERLSVSRNLLSSLPETIGSLRNLLLINVSNNKLKSLPES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IGSC+SLEELQANDNL+ +LP+S+CNLIHLKSL L+NNNIGQ+P+NLLKDCKALQN+SLH
Sbjct: 155 IGSCFSLEELQANDNLMEDLPSSLCNLIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPI MDQFQQMEGFE+FEARR+KKFDKQIDSNVMISSKGL+EGVD
Sbjct: 215 GNPILMDQFQQMEGFEDFEARRKKKFDKQIDSNVMISSKGLDEGVD 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493638|gb|AFK34885.1| unknown [Medicago truncatula]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 155/166 (93%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + LDGNRI+SLPDELGQLVRLERLSI GN+LT LP TIGSLRNL++LN+SNNKL SLPES
Sbjct: 95  VNLDGNRISSLPDELGQLVRLERLSIAGNLLTSLPATIGSLRNLLILNISNNKLHSLPES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC+SLEELQANDNLI +LP+S+CNL HLKSLCL+NNN+ QIP NLLKDCKALQN+SLH
Sbjct: 155 VGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPMNLLKDCKALQNLSLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPISMDQFQQM+GF+EFEARR+KKFDKQIDSNVMI SKGL+EGVD
Sbjct: 215 GNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVD 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477156|ref|XP_004154946.1| PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like [Cucumis sativus]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 157/166 (94%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGN IT+LPDELGQLVRLERLS+  N+L+ LPETIGSLRNL+L+NVSNNKLKSLPES
Sbjct: 95  MILDGNHITTLPDELGQLVRLERLSVSRNLLSSLPETIGSLRNLLLINVSNNKLKSLPES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IGSC+SLEELQANDNL+ +LP+S+CNLIHLKSL L+NNNIGQ+P+NLLKDCKALQN+SLH
Sbjct: 155 IGSCFSLEELQANDNLMEDLPSSLCNLIHLKSLRLDNNNIGQLPSNLLKDCKALQNVSLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPI MDQFQQMEGFE+FEARR+KKFDKQIDSNVMISSKGL+EGVD
Sbjct: 215 GNPILMDQFQQMEGFEDFEARRKKKFDKQIDSNVMISSKGLDEGVD 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133032|ref|XP_002321465.1| predicted protein [Populus trichocarpa] gi|222868461|gb|EEF05592.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 142/174 (81%), Positives = 156/174 (89%), Gaps = 8/174 (4%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           MTLDGNRI SLPDELGQLVRLERLSI  N+LTCLPETIGSLRNL LLNVSNNKLK+LPES
Sbjct: 105 MTLDGNRIASLPDELGQLVRLERLSISDNILTCLPETIGSLRNLSLLNVSNNKLKTLPES 164

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IGSC+SLEELQANDNLI +LPAS+CNLIHLKSL LNNN++GQIP NLLKDCKALQ+ISLH
Sbjct: 165 IGSCFSLEELQANDNLIEDLPASVCNLIHLKSLSLNNNSVGQIPPNLLKDCKALQSISLH 224

Query: 121 NNPISMDQFQQ--------MEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
           +NPISMDQFQQ        + GF+EFE RR++KFDKQIDSNVMI SKGL+EGVD
Sbjct: 225 DNPISMDQFQQARHRFSSLLHGFQEFEGRRKRKFDKQIDSNVMIGSKGLDEGVD 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645835|gb|ACU23408.1| unknown [Glycine max]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 153/166 (92%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGNRITSLPDELGQLVRLER+SI GN+LT LP TIGSLRNLVLLNVSNNKL+SL ES
Sbjct: 95  MNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLSES 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC+SLEELQANDNLI +LP+ +CNL HLKSLCL+NNN+ QIP NLLKDC ALQNISLH
Sbjct: 155 VGSCFSLEELQANDNLIEDLPSLVCNLSHLKSLCLDNNNVKQIPLNLLKDCIALQNISLH 214

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
            NPISMDQFQQMEGF+EFEARR+KKFDKQIDSNVMI SKGL+EGVD
Sbjct: 215 GNPISMDQFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVD 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547259|ref|XP_002514687.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223546291|gb|EEF47793.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 153/166 (92%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M LDGN I+SLPDELGQLVRLE+LSI GNML  LPETIGSLRNL LLNVSNNKLK+LPES
Sbjct: 97  MILDGNCISSLPDELGQLVRLEQLSISGNMLMSLPETIGSLRNLALLNVSNNKLKTLPES 156

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           IGSC+SLEELQANDN I +LPASICNL+HLKSL LNNNN+ +IP NLLK+CKALQ ISLH
Sbjct: 157 IGSCFSLEELQANDNSIEDLPASICNLVHLKSLSLNNNNVSKIPTNLLKECKALQKISLH 216

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVD 166
           +NPISMDQFQQ+EGF+EFE RR++KFDKQIDSNVMISSKGL+EG+D
Sbjct: 217 DNPISMDQFQQLEGFQEFEERRKRKFDKQIDSNVMISSKGLDEGID 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810893|ref|XP_002873330.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319167|gb|EFH49589.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/167 (77%), Positives = 148/167 (88%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + LDGNRI+ LPDELGQLVRLE+LSI  NML  LP+TIGSLRNLVLLNVSNN+LKSLPES
Sbjct: 96  LMLDGNRISCLPDELGQLVRLEQLSISRNMLIYLPDTIGSLRNLVLLNVSNNRLKSLPES 155

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GSC SLEE+QANDN++ ELPAS+CNLI LKSLCL+NN + QIP  LL  CK+LQN+SLH
Sbjct: 156 VGSCASLEEIQANDNVVEELPASLCNLIQLKSLCLDNNQVNQIPDGLLIHCKSLQNLSLH 215

Query: 121 NNPISMDQFQQMEGFEEFEARRRKKFDKQIDSNVMISSKGLNEGVDK 167
           NNPISMDQFQ MEG++EFE RR+KKFDKQIDSNVM+ SKGL+ GVDK
Sbjct: 216 NNPISMDQFQLMEGYQEFEERRKKKFDKQIDSNVMMGSKGLDVGVDK 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2142773	262	AT5G07910 "AT5G07910" [Arabido	1.0	0.637	0.622	1.4e-48
TAIR|locus:2827587	526	PIRL5 "AT2G17440" [Arabidopsis	0.640	0.203	0.364	5.3e-13
DICTYBASE|DDB_G0278509	1248	DDB_G0278509 "MLK family prote	0.742	0.099	0.365	5e-12
ZFIN|ZDB-GENE-050506-25	294	lrrc30 "leucine rich repeat co	0.616	0.350	0.428	5.1e-12
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.736	0.224	0.346	5.3e-12
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.742	0.221	0.317	9e-12
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.742	0.221	0.317	9e-12
FB|FBgn0038504	641	Sur-8 "Sur-8" [Drosophila mela	0.712	0.185	0.341	1.8e-11
ZFIN|ZDB-GENE-030616-572	1724	scrib "scribbled homolog (Dros	0.694	0.067	0.341	2e-11
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.712	0.204	0.358	2e-11

TAIR|locus:2142773 AT5G07910 "AT5G07910" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/167 (62%), Positives = 120/167 (71%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + LDGNRI+ LPDELGQLVRLE+LSI  NML  LP+TIGSLR               PES
Sbjct:    96 LMLDGNRISCLPDELGQLVRLEQLSISRNMLIYLPDTIGSLRNLLLLNVSNNRLKSLPES 155

Query:    61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
             +GSC SLEE+QANDN++ ELPAS+CNLI LKSL L+NN + QIP  LL  CK+LQN+SLH
Sbjct:   156 VGSCASLEEVQANDNVVEELPASLCNLIQLKSLSLDNNQVNQIPDGLLIHCKSLQNLSLH 215

Query:   121 NNPISMDXXXXXXXXXXXXARRRKKFDKQIDSNVMISSKGLNEGVDK 167
             NNPISMD             RR+KKFDKQIDSNVM+ SK L+ GVDK
Sbjct:   216 NNPISMDQFQLMEGYQDFEERRKKKFDKQIDSNVMMGSKALDVGVDK 262

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2827587 PIRL5 "AT2G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 39/107 (36%), Positives = 58/107 (54%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + L GN+++SLP    +L+ LE L +  N L+ LPE+IGSL                P S
Sbjct:   281 LNLSGNQLSSLPSSFNRLIHLEELDLSSNSLSILPESIGSLVSLKKLDVETNNIEEIPHS 340

Query:    61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL 107
             I  C S+EEL+A+ N +  LP ++  L  L+ L +  NNI Q+P  +
Sbjct:   341 ISGCSSMEELRADYNRLKALPEAVGKLSTLEILTVRYNNIRQLPTTM 387

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0278509 DDB_G0278509 "MLK family protein kinase DDB_G0278509" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 46/126 (36%), Positives = 68/126 (53%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRXXXXXXXXXXXXXXXPE 59
             + L  N +  +P  L  L +L  LSI  N ++ LP+  + SL                P 
Sbjct:   576 LNLSHNELQEIPSSLRHLSKLHSLSIDYNQISVLPDKVVASLSRLAKLTISNNKIKQLPF 635

Query:    60 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
             +I +  SL EL A++N+I  LP SIC L +LK L LNNNN+ ++P+N+    K L ++ L
Sbjct:   636 AINNLSSLIELNASNNVIELLPDSICYLSNLKKLNLNNNNLKELPSNIGFLTK-LVDLQL 694

Query:   120 HNNPIS 125
             +NN IS
Sbjct:   695 YNNQIS 700

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-050506-25 lrrc30 "leucine rich repeat containing 30" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 45/105 (42%), Positives = 55/105 (52%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + L  N + SLP  LG L  L  L+I GN LT LP  IG LR               PE 
Sbjct:    72 LNLSLNSLRSLPGSLGLLQNLVVLNIWGNHLTSLPPEIGRLRNLKVLFAYRNNLSEVPEE 131

Query:    61 IGSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 104
             +  C  LE L  AN++L G LPAS+  L+ LK L L++NNI  IP
Sbjct:   132 LCMCSKLEVLSLANNHLTG-LPASLSALVGLKKLNLSHNNITHIP 175

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 43/124 (34%), Positives = 64/124 (51%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + L  N+++SLP    +LVRLE L +  N L  LPE+IGSL                P S
Sbjct:   297 LNLGSNQLSSLPSAFSRLVRLEELDLSCNNLPILPESIGSLVSLKKLDVETNDIEEIPYS 356

Query:    61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
             IG C SL EL+A+ N +  LP +I  +  L+ L +  NNI Q+P  +     +L+ + + 
Sbjct:   357 IGGCSSLIELRADYNKLKALPEAIGKITTLEILSVRYNNIRQLPTTM-SSLASLKELDVS 415

Query:   121 NNPI 124
              N +
Sbjct:   416 FNEL 419

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 40/126 (31%), Positives = 69/126 (54%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + L  N++  LP+++G L +L  L +  N L  +P  IG L+               P S
Sbjct:   403 LVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRS 462

Query:    61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISL 119
             IG+  SL++L+  +N +  +P  I +L  LKSL LN+N+ +  +P  L   C++L+ +S+
Sbjct:   463 IGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELAL-CQSLEIMSI 521

Query:   120 HNNPIS 125
              N+P+S
Sbjct:   522 ENSPLS 527

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 40/126 (31%), Positives = 69/126 (54%)

Query:     1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
             + L  N++  LP+++G L +L  L +  N L  +P  IG L+               P S
Sbjct:   403 LVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQSNKILTLPRS 462

Query:    61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISL 119
             IG+  SL++L+  +N +  +P  I +L  LKSL LN+N+ +  +P  L   C++L+ +S+
Sbjct:   463 IGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLPFELAL-CQSLEIMSI 521

Query:   120 HNNPIS 125
              N+P+S
Sbjct:   522 ENSPLS 527

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

FB|FBgn0038504 Sur-8 "Sur-8" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 41/120 (34%), Positives = 61/120 (50%)

Query:     6 NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCY 65
             NRIT++ D+L QLV L  LS+  N +  L   IG+L                PE IG+C 
Sbjct:   262 NRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCV 321

Query:    66 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
             +L  L    N + ++P SI NL  L  L +  N +  +PA L K+CK++   ++  N I+
Sbjct:   322 NLSALDLQHNELLDIPDSIGNLKSLVRLGMRYNRLSSVPATL-KNCKSMDEFNVEGNGIT 380

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030616-572 scrib "scribbled homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 40/117 (34%), Positives = 62/117 (52%)

Query:     6 NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCY 65
             NR++ LP E+  L+ L  L +  N+L  LP++IGSL+                +SIG C 
Sbjct:   230 NRLSELPTEISGLIALTDLLLSENLLEILPDSIGSLKKLSILKVNQNRLVHLTDSIGECE 289

Query:    66 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
             +L EL   +NL+  LP S+  L  L +L ++ N +  +PA L   C +L  +SL +N
Sbjct:   290 NLTELMLTENLLQSLPRSLGKLKKLTNLNVDRNRLSSVPAEL-GGCVSLNVLSLRDN 345

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0014021 "secondary neural tube formation" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0016020 "membrane" evidence=IEA;IDA

GO:0060027 "convergent extension involved in gastrulation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0016477 "cell migration" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0045930 "negative regulation of mitotic cell cycle" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0050918 "positive chemotaxis" evidence=ISS

GO:0005913 "cell-cell adherens junction" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0032863 "activation of Rac GTPase activity" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISS

GO:0060561 "apoptotic process involved in morphogenesis" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 43/120 (35%), Positives = 59/120 (49%)

Query:     6 NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGSCY 65
             NRIT++  ++  L RL  LSI  N +  LP  IG L                P+ IG+C 
Sbjct:   202 NRITAVEKDVRNLPRLSTLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCT 261

Query:    66 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
              +  L    N + +LP +I NL  L  L L  N +  IP +L K C AL+ ++L NN IS
Sbjct:   262 QITNLDLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAK-CSALEELNLENNNIS 320

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0081	hypothetical protein (279 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.27720002	hypothetical protein (418 aa)			•						0.489
	eugene3.27720001	hypothetical protein (224 aa)			•						0.478
	eugene3.00150435	hypothetical protein (198 aa)			•						0.463
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.449
	fgenesh4_pg.C_scaffold_1286000001	hypothetical protein (245 aa)			•						0.408
	eugene3.00120315	hypothetical protein (360 aa)			•						0.401
	eugene3.68450001	hypothetical protein (266 aa)			•						0.400

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	6e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 56.6 bits (136), Expect = 6e-10
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 11/126 (8%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M L  NRIT LP+ L     L+ L +  N ++CLPE +     L  L+V +N +++LP  
Sbjct: 246 MELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAH 301

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + S   +  L    N +  LP ++     LK+L    N +  +PA+L      LQ + + 
Sbjct: 302 LPS--GITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL---PPELQVLDVS 354

Query: 121 NNPISM 126
            N I++
Sbjct: 355 KNQITV 360

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
            L GN+I+ LP E+  L  LE L +  N +  L  ++ +L+NL  L +SNNKL+ LPESI
Sbjct: 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           G+  +LE L  ++N I  +  S+ +L +L+ L L+ N++      +      L+ +   
Sbjct: 252 GNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RNLVLLNVSNNKLKSLPES 60
            L+ NR+ S   EL +L  L  L +  N +T +P  IG L  NL  L++S+NK++SLP  
Sbjct: 99  DLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP 158

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + +  +L+ L  + N + +LP  + NL +L +L L+ N I  +P   ++   AL+ + L 
Sbjct: 159 LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLS 217

Query: 121 NNPI 124
           NN I
Sbjct: 218 NNSI 221

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 3   LDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           LD N IT +P  +G L   L+ L +  N +  LP  + +L NL  L++S N L  LP+ +
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
            +  +L  L  + N I +LP  I  L  L+ L L+NN+I ++  + L + K L  + L N
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSN 241

Query: 122 NPI 124
           N +
Sbjct: 242 NKL 244

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 34  LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLK 91
           +P  I  LR+L  +N+S N ++ ++P S+GS  SLE L  + N   G +P S+  L  L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 92  SLCLNNNNI-GQIPANL 107
            L LN N++ G++PA L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 11  LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLE 68
           +P+ + QL  LE L +  N  T  +P  + SL  L +L + +NK    +P+++G   +L 
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359

Query: 69  ELQ-ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 125
            L  + +NL GE+P  +C+  +L  L L +N++ G+IP + L  C++L+ + L +N  S
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  N+I SLP  L  L  L+ L +  N L+ LP+ + +L NL  L++S NK+  LP  
Sbjct: 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE 204

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           I    +LEEL  ++N I EL +S+ NL +L  L L+NN +  +P   + +   L+ + L 
Sbjct: 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLS 263

Query: 121 NNPIS 125
           NN IS
Sbjct: 264 NNQIS 268

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 37/103 (35%), Positives = 58/103 (56%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L  N ++ LP  L  L  L  L + GN ++ LP  I  L  L  L++SNN +  L  S+ 
Sbjct: 170 LSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLS 229

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 105
           +  +L  L+ ++N + +LP SI NL +L++L L+NN I  I +
Sbjct: 230 NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 6/128 (4%)

Query: 3   LDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPE 59
           L GN +   +P+ L  L  LE L++  N L   +P  +G +++L  + +  N L   +P 
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230

Query: 60  SIGSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNI 117
            IG   SL  L    +NL G +P+S+ NL +L+ L L  N + G IP ++    + L ++
Sbjct: 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISL 289

Query: 118 SLHNNPIS 125
            L +N +S
Sbjct: 290 DLSDNSLS 297

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 6   NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY 65
           N +T+LP+ L     L+ L    N LT LP ++     L +L+VS N++  LPE++    
Sbjct: 314 NSLTALPETLP--PGLKTLEAGENALTSLPASLPP--ELQVLDVSKNQITVLPETLPP-- 367

Query: 66  SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL---LKDCKALQNISLHNN 122
           ++  L  + N +  LP ++     L+ +  + NN+ ++P +L     +      I +  N
Sbjct: 368 TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425

Query: 123 PISMDQFQQME 133
           P S    Q M+
Sbjct: 426 PFSERTIQNMQ 436

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 5/119 (4%)

Query: 11  LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKL-KSLPESIGSCYSLE 68
           +P+++G    L+ L + GN+L   +P ++ +L +L  L +++N+L   +P  +G   SL+
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 69  ELQAN-DNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 125
            +    +NL GE+P  I  L  L  L L  NN  G IP++ L + K LQ + L+ N +S
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 39  GSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLN 96
           GS+ NL  L++SNN L   +P  IGS  SL+ L    N L+G++P S+ NL  L+ L L 
Sbjct: 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196

Query: 97  NNN-IGQIPANLLKDCKALQNISLHNNPIS 125
           +N  +GQIP  L +  K+L+ I L  N +S
Sbjct: 197 SNQLVGQIPRELGQ-MKSLKWIYLGYNNLS 225

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 11/103 (10%)

Query: 23  RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82
           RL ILG  LT +P  I     +  L + NN+LKSLPE++    +++ L AN N +  +PA
Sbjct: 184 RLKILG--LTTIPACIP--EQITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPA 237

Query: 83  SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           ++ + I    + L+ N I ++P  L     ALQ++ L +N IS
Sbjct: 238 TLPDTIQE--MELSINRITELPERL---PSALQSLDLFHNKIS 275

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 66  SLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
           +L+ L  ++N +  +P      L +LK L L+ NN+  I         +L+++ L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 6   NRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLKS-LPESIG 62
           N+ +  +P  LG+   L  L +  N LT  +PE + S  NL  L + +N L+  +P+S+G
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 63  SCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
           +C SL  ++  DN   GELP+    L  +  L ++NNN+     +   D  +LQ +SL  
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 122 N 122
           N
Sbjct: 462 N 462

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 27/123 (21%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLKSLPES 60
           L  N+ + ++P +LG L  L +L +  N L+  +P+ + S + LV L++S+N+L      
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS----- 536

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ-NIS 118
                            G++PAS   +  L  L L+ N + G+IP NL      +Q NIS
Sbjct: 537 -----------------GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 119 LHN 121
            HN
Sbjct: 580 -HN 581

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L  N I  L   L  L  L  L +  N L  LPE+IG+L NL  L++SNN++ S+  S
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-S 272

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +GS  +L EL  + N +      I  L+ L    L  N +  + A  LK    L N ++ 
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIALLLLLLE--LLLNLLLTLKALELKLNSILLNNNIL 330

Query: 121 NNPI 124
           +N  
Sbjct: 331 SNGE 334

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.48
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.48
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.47
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.22
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.19
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
PLN03150	623	hypothetical protein; Provisional	99.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.04
PLN03150	623	hypothetical protein; Provisional	99.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.43
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.0
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.17
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.69
smart00370	26	LRR Leucine-rich repeats, outliers.	95.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.39
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.54
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	87.19
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.82
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.94

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=5.7e-19  Score=118.45  Aligned_cols=126  Identities=29%  Similarity=0.461  Sum_probs=113.2

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      |++.+|+|.++|.+++.+++|+.|++..|++..+|..|+.++.|+.+|+.+|++.  .+|..|..|..|+.|+++.|.+.
T Consensus        61 ln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen   61 LNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             hhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence            4678888999999999999999999999998889999999999999999999888  46888888999999999999999


Q ss_pred             ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           79 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .+|..++++.+++.+.+..|.+-++|.+ ++.+..|+.+++.+|++...
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence            9999999999999999999999999998 68899999999999988743

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.9e-17  Score=111.16  Aligned_cols=140  Identities=30%  Similarity=0.495  Sum_probs=119.0

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC--
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG--   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~--   78 (167)
                      |.+++|.++.+|+.++.+.+|+.|++..|+++.+|..+..+++|+.+++.-|++..+|.+|+.++.|+.|++..|.+.  
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~  117 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence            457888899899999999999999999999999999999999999999999999888999999999999999999885  


Q ss_pred             ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC--hhhhccccchHHHHHH
Q 031005           79 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS--MDQFQQMEGFEEFEAR  141 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~l~~l~~~  141 (167)
                      .+|..|..+..++.+++++|.+.-+|+. .+.+++|+.+.+..|.+-  ..+.+.+..++++...
T Consensus       118 ~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  118 SLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             cCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            6788888889999999999999999988 688999999999998775  3344455555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.60  E-value=1.7e-16  Score=123.39  Aligned_cols=135  Identities=26%  Similarity=0.337  Sum_probs=117.9

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.|..| ++++...++|+.|++++|++++++ .+|..+..|+.|.++.|.+..+.+ .|.++++|++|+++.|.+
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            57889999877 677888899999999999999986 678889999999999999998865 788899999999999987


Q ss_pred             C-cc---chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccch
Q 031005           78 G-EL---PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF  135 (167)
Q Consensus        78 ~-~l---~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l  135 (167)
                      . .+   ...|..+++|+.|++.+|++.+++..+|.+++.|.+|++.+|++....+..+..+
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            5 22   4567789999999999999999999999999999999999999987766666655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.53  E-value=3.3e-14  Score=120.24  Aligned_cols=123  Identities=31%  Similarity=0.511  Sum_probs=79.0

Q ss_pred             cccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+. .+|..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+. .+|..++.+.+|+.|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            45566665 556667777777777777777653 5666677777777777777666 34666666677777777766664


Q ss_pred             -ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005           79 -ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 -~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       .+|..++.+++|++|++++|.+. .+|.. ++.+++|+.|++++|.+.
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence             45666666666666666666663 33333 566666666666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.52  E-value=1e-14  Score=113.67  Aligned_cols=158  Identities=21%  Similarity=0.327  Sum_probs=102.7

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeC------------------------CCCC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN------------------------NKLK   55 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~------------------------n~~~   55 (167)
                      ||+++|.+.++ +..|.++++|+.+.+..|.++.+|.......+++.|++.+                        |.|+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is  162 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS  162 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence            57788888877 4457788888888888888777765544434444444444                        4444


Q ss_pred             ccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh---hc
Q 031005           56 SLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ---FQ  130 (167)
Q Consensus        56 ~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~---~~  130 (167)
                      ++|. .|..-.++++|++++|+|+.+. ..|..+.+|..+.+++|.++.+|.-+|.++++|+.|++..|++....   +.
T Consensus       163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence            4432 2333345666667777666552 45666778888888888888888888888888999999888887543   44


Q ss_pred             cccchHHHHHHHHHhhhhhcccccceeecC
Q 031005          131 QMEGFEEFEARRRKKFDKQIDSNVMISSKG  160 (167)
Q Consensus       131 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  160 (167)
                      .+.+++.+...+.+-.  .++++++-...+
T Consensus       243 gL~Sl~nlklqrN~I~--kL~DG~Fy~l~k  270 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDIS--KLDDGAFYGLEK  270 (873)
T ss_pred             CchhhhhhhhhhcCcc--cccCcceeeecc
Confidence            4555555555554332  244555544443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.48  E-value=4.2e-14  Score=96.71  Aligned_cols=119  Identities=29%  Similarity=0.484  Sum_probs=40.8

Q ss_pred             CCCCCCCchhhhCCCCCCEEEeeCCcCcccccccc-CCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh
Q 031005            5 GNRITSLPDELGQLVRLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS   83 (167)
Q Consensus         5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~   83 (167)
                      .+.|..++. +.+...+++|++.+|.|+.+. .++ .+.+|+.|++++|.++.+ +.+..++.|+.|++++|.++.++..
T Consensus         6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen    6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHH
T ss_pred             ccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccc
Confidence            334444433 345557788888888888874 344 577888888988888877 3577788888889988888888655


Q ss_pred             H-hcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005           84 I-CNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        84 ~-~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      + ..+++|++|++++|.|..+.. ..++.+++|+.|++.+||++.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            5 457888889988888854433 336788888889988888874

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=1e-13  Score=117.35  Aligned_cols=124  Identities=30%  Similarity=0.515  Sum_probs=72.3

Q ss_pred             CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+. .+|..+.++++|++|++++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            355666655 556666667777777777766654 5566666666666666666665 3455566666666666666655


Q ss_pred             C-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005           78 G-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        78 ~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      . .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeec
Confidence            4 34555555555555555555552 33332 444555555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.48  E-value=5.7e-14  Score=96.04  Aligned_cols=124  Identities=27%  Similarity=0.435  Sum_probs=59.4

Q ss_pred             CcccCCCCCCCchhhh-CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhh-ccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~l~~L~~l~l~~~~~~   78 (167)
                      |+|.+++|+.|. .+. .+.+|+.|++++|.++.++ .+..++.|++|++++|.++.+++.+ ..+++|+.|++++|.+.
T Consensus        24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS  101 (175)
T ss_dssp             -------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred             cccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence            578899998874 354 6889999999999999984 5778999999999999999997655 46899999999999997


Q ss_pred             ccc--hhHhcCCCcCEEEccCCcCCCCc---hHHhhCCCCCceEEcccCCCChhh
Q 031005           79 ELP--ASICNLIHLKSLCLNNNNIGQIP---ANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        79 ~l~--~~~~~~~~l~~l~l~~n~l~~~~---~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .+.  ..+..+++|++|++.+|++...+   ..++..+|+|+.||  +.+++..+
T Consensus       102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD--~~~V~~~E  154 (175)
T PF14580_consen  102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD--GQDVTEEE  154 (175)
T ss_dssp             SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET--TEETTS-B
T ss_pred             ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC--CEEccHHH
Confidence            653  46788999999999999995443   36688999999997  44665443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.47  E-value=6.4e-15  Score=115.92  Aligned_cols=144  Identities=27%  Similarity=0.417  Sum_probs=98.3

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      +.+|++.++-..+..++.|+.+.+..|++.  .+|+.+-.+..|++||+++|.+.++|..+..-.++..|++++|.|..+
T Consensus        62 ~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   62 MAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI  141 (1255)
T ss_pred             hhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence            445555555555566666666666666655  367777777777777777777777777777777777777777777777


Q ss_pred             chh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHHHhhh
Q 031005           81 PAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFD  147 (167)
Q Consensus        81 ~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~~~~~  147 (167)
                      |.. +-++..|-.||+++|++..+|++ ..++..|++|.+++||+.-.....++.+.+|...+-....
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence            643 34566677777777777777777 5777777888888888776666666666665555544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=2.6e-14  Score=107.09  Aligned_cols=124  Identities=38%  Similarity=0.566  Sum_probs=104.3

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc-
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP-   81 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~-   81 (167)
                      +++|.+.-+|..++.+++|+.|+++.|.+..+|..++.+-.||+++++.|+|..+|.-+..+..++.+-.+.|.+++++ 
T Consensus       419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~  498 (565)
T KOG0472|consen  419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP  498 (565)
T ss_pred             hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence            4556666666667888899999999999888988888888899999999988888776666666777766778888885 


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .++.++.+|.++|+.+|.+..+|+. +++|.+++++++++|++...
T Consensus       499 ~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  499 SGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             HHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccCCC
Confidence            4588999999999999999999996 79999999999999999843

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.42  E-value=1.3e-14  Score=114.15  Aligned_cols=153  Identities=25%  Similarity=0.337  Sum_probs=123.5

Q ss_pred             CCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCcCCccch
Q 031005            5 GNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus         5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      ..++..+|..++.+.+|+.|.+.+|++..+-..+..++.|+.++++.|.+.  .+|+.+..+..|..++++.|.++++|.
T Consensus        41 rt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~  120 (1255)
T KOG0444|consen   41 RTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT  120 (1255)
T ss_pred             hhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence            344556667777777777777777777766666777788888888888776  578888889999999999999999999


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh--hhccccchHHHHHHHHHhhhhhccccccee
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD--QFQQMEGFEEFEARRRKKFDKQIDSNVMIS  157 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  157 (167)
                      .+....++.+|++++|.|.+||...+-++..|-.||++.|+++..  ....+..++.|...+..-...|+.+-..++
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt  197 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT  197 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence            999989999999999999999999999999999999999999854  445688888888887776666665544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.42  E-value=2.2e-14  Score=104.19  Aligned_cols=125  Identities=25%  Similarity=0.346  Sum_probs=108.5

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      +|+++|.|+.+..+..-.|.++.|++++|.+..+.+ ++.+++|+.||+++|.++.+..+-..+.+++.|.+++|.+..+
T Consensus       289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L  367 (490)
T KOG1259|consen  289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL  367 (490)
T ss_pred             ccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh
Confidence            589999999999999899999999999999998854 8889999999999999998755556788999999999999877


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                       .+++.+-+|..||+++|+|..+.. ..++.+|.|.++.+.+||+...
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence             567888899999999999965544 3378999999999999999743

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.36  E-value=3.1e-14  Score=106.68  Aligned_cols=126  Identities=34%  Similarity=0.573  Sum_probs=82.6

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCC---------------
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYS---------------   66 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~---------------   66 (167)
                      ++.+|.++++|+..-++..|+.++...|.++.+|+.++.+.+|..+++.+|++.++| .|.++..               
T Consensus       166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp  244 (565)
T KOG0472|consen  166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP  244 (565)
T ss_pred             hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhH
Confidence            556777777766655577788888888888888888888888888888888888776 4555544               


Q ss_pred             ---------CCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhc
Q 031005           67 ---------LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        67 ---------L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                               +..||+..|.++++|..+.-+.++.++|+++|.++.+|.. ++++ +|+.+-+.|||+.....+
T Consensus       245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~  315 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRRE  315 (565)
T ss_pred             HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHHH
Confidence                     4455555555555555555555555666666666555554 4555 566666666666654333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=2e-12  Score=100.59  Aligned_cols=121  Identities=36%  Similarity=0.563  Sum_probs=80.5

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC----
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG----   78 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~----   78 (167)
                      +..|.+..||.++.++..|++++++.|+++.+|..+..++ |+.+.+++|+++.+|+.++...+|..++++.|.+.    
T Consensus       105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps  183 (722)
T KOG0532|consen  105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS  183 (722)
T ss_pred             HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence            4455666666666666666666666666666655555444 55555556665555555555555555555555444    


Q ss_pred             -------------------ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           79 -------------------ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        79 -------------------~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                                         .+|..+. .-.|..||++.|++..+|.+ |.+|..|++|-+..||+..
T Consensus       184 ql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  184 QLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence                               4444444 23577899999999999988 7899999999999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.23  E-value=1.7e-12  Score=105.52  Aligned_cols=138  Identities=25%  Similarity=0.335  Sum_probs=107.4

Q ss_pred             cccCCCCC-CCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      .+.+|.++ ...+.+.+..+|+.|++++|.++.+|. .+.++..|+.|++++|++..+|..+..++.|+.|...+|.+..
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence            45677777 556667888999999999999999884 5788999999999999999999888888999999999999988


Q ss_pred             cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHH
Q 031005           80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEA  140 (167)
Q Consensus        80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~  140 (167)
                      +| .+..++.++.+|++.|.++.+-.......+.|+.||++||.....+...+..+..+..
T Consensus       445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~  504 (1081)
T KOG0618|consen  445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ  504 (1081)
T ss_pred             ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhh
Confidence            88 7888899999999999885543321223378999999999865544444444444333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.22  E-value=5.5e-11  Score=97.63  Aligned_cols=116  Identities=31%  Similarity=0.525  Sum_probs=64.4

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhc-------------------
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG-------------------   62 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~-------------------   62 (167)
                      ++++|++..+|..+.  ..|+.|++++|+++.+|..+.  ++|+.|++++|.++.+|..+.                   
T Consensus       247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcc
Confidence            344444444444332  245666666666655554432  356666666666655443221                   


Q ss_pred             cCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           63 SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        63 ~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ..++|+.|++++|.++.+|..+.  ++|+.|++++|.+..+|..+   .+.|+.|++++|.+..
T Consensus       323 l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        323 LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTN  381 (754)
T ss_pred             ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCC
Confidence            01245555555555555544332  46777777777777776643   3567888888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.20  E-value=2e-12  Score=96.76  Aligned_cols=132  Identities=26%  Similarity=0.365  Sum_probs=77.9

Q ss_pred             CCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCC-CcCCccch
Q 031005            6 NRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQAND-NLIGELPA   82 (167)
Q Consensus         6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~-~~~~~l~~   82 (167)
                      .+++++|..+  .+....+++..|+|+.|| ..|+.+++|+.||+++|.|+++ |++|.++..+..+.+-+ |+|+.+|.
T Consensus        56 ~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   56 KGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             CCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            3445555432  133566666777777765 4566677777777777777766 55666666665554444 66666653


Q ss_pred             -hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHH
Q 031005           83 -SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFE  139 (167)
Q Consensus        83 -~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~  139 (167)
                       .|..+.+++.|.+.-|.+.-++..++.+++++..|.+-.|.+.....+.+..+..+.
T Consensus       134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~  191 (498)
T KOG4237|consen  134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIK  191 (498)
T ss_pred             hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccc
Confidence             455566666666666666666666666666666666666665544444444444333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=1.1e-12  Score=102.07  Aligned_cols=135  Identities=30%  Similarity=0.464  Sum_probs=108.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      .|++.|++.++|..+..+..|+.+.++.|.+..+|..+..+..|++++++.|.++.+|..++.++ |+.+-+++|+++.+
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l  158 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL  158 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC
Confidence            36788999999999999999999999999999999999999999999999999999998887775 88999999999999


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCC----------------------CceEEcccCCCChh--hhccccchH
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKA----------------------LQNISLHNNPISMD--QFQQMEGFE  136 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~----------------------L~~l~l~~n~~~~~--~~~~~~~l~  136 (167)
                      |..++...++..+|.+.|.+.++|... ..+.+                      |..||++.|++...  .+..+..++
T Consensus       159 p~~ig~~~tl~~ld~s~nei~slpsql-~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  159 PEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ  237 (722)
T ss_pred             CcccccchhHHHhhhhhhhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence            988887777888888777776666552 33333                      55777777777633  344444444


Q ss_pred             H
Q 031005          137 E  137 (167)
Q Consensus       137 ~  137 (167)
                      .
T Consensus       238 ~  238 (722)
T KOG0532|consen  238 V  238 (722)
T ss_pred             e
Confidence            3

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.19  E-value=8.7e-11  Score=96.49  Aligned_cols=116  Identities=29%  Similarity=0.415  Sum_probs=83.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++++++.+|..+.  +.++.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.+..+
T Consensus       183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        183 LRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL  256 (754)
T ss_pred             EEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC
Confidence            3566667777776543  468888888888888876553  478888888888887776543  3688888888888877


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      |..+.  .+|+.|++++|.+..+|..+   .++|+.|++++|.++..
T Consensus       257 P~~l~--s~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        257 PERLP--SALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTL  298 (754)
T ss_pred             ChhHh--CCCCEEECcCCccCcccccc---CCCCcEEECCCCccccC
Confidence            76654  36888888888887777643   24678888888877643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.19  E-value=4.2e-11  Score=98.25  Aligned_cols=106  Identities=31%  Similarity=0.396  Sum_probs=76.2

Q ss_pred             CCCEEEeeCCcCccccccccC-----------------CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005           20 RLERLSILGNMLTCLPETIGS-----------------LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      .|++|++++|+++.+|.....                 ..+|+.|++++|.++.+|..   .++|+.|++++|.+..+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~  419 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM  419 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence            577888888877766532111                 13566677777777666543   2467788888888877765


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccc
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM  132 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  132 (167)
                      ..   .+|+.|++++|.++.+|.. +..++.|..+++++|+++......+
T Consensus       420 l~---~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        420 LP---SGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ch---hhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence            32   3677889999999999887 6789999999999999997654443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=2.7e-12  Score=96.08  Aligned_cols=124  Identities=31%  Similarity=0.487  Sum_probs=109.8

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeC-CCCCccch-hhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSN-NKLKSLPE-SIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~-n~~~~~~~-~~~~l~~L~~l~l~~~~   76 (167)
                      +.|..|+|+.||+ +|..+++|+.|+++.|.|+.| |++|.+++++.++.+-+ |+|+.+|. .|.++..++.|.+.-|.
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            3577899999965 689999999999999999997 68999999888777766 99999986 78999999999999999


Q ss_pred             CCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCC
Q 031005           77 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  124 (167)
Q Consensus        77 ~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  124 (167)
                      +..++ ..+..++++..|.+-+|.+..++...+..+.+++.+.+..|+.
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            98775 5788899999999999999999887789999999999988883

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=8.2e-10  Score=89.67  Aligned_cols=105  Identities=30%  Similarity=0.461  Sum_probs=77.4

Q ss_pred             CCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC-ccchhHhcCCCcCEEEccC
Q 031005           21 LERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNN   97 (167)
Q Consensus        21 L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~-~l~~~~~~~~~l~~l~l~~   97 (167)
                      ++.|++++|.++. +|..+..+++|+.|++++|.+. .+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5677788887774 6777888888888888888877 56777788888888888888775 5677788888888888888


Q ss_pred             CcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005           98 NNI-GQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        98 n~l-~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      |.+ +.+|..+.....++..+++.+|+..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            877 5666654333345667777776543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.06  E-value=3.2e-11  Score=98.38  Aligned_cols=123  Identities=32%  Similarity=0.425  Sum_probs=104.1

Q ss_pred             CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005            1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      |+|++|++..+|.+ +.++..|+.|++++|+++.+|.....+..|++|...+|.+..+| .+..++.|+.+|++.|.++.
T Consensus       388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence            68999999999876 68999999999999999999999999999999999999999998 78899999999999999875


Q ss_pred             c--chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           80 L--PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        80 l--~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +  +..... ++|++||+++|....+....+..+.+++..++.-++..
T Consensus       467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~  513 (1081)
T KOG0618|consen  467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTP  513 (1081)
T ss_pred             hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccCCCC
Confidence            4  332222 89999999999976665555777777887777777443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=2.4e-10  Score=64.92  Aligned_cols=59  Identities=34%  Similarity=0.501  Sum_probs=41.4

Q ss_pred             CCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005           19 VRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus        19 ~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |+|++|++++|+++.+| ..|..+++|++|++++|.+..+++ .|..+++|+++++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45677777777777776 466777777777777777777643 567777777777776653

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.04  E-value=8.4e-10  Score=90.73  Aligned_cols=94  Identities=34%  Similarity=0.428  Sum_probs=57.6

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeE----------
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEEL----------   70 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l----------   70 (167)
                      |++++++++.+|+.+.  ++++.|++.+|+++.+|..   .++|+.|++++|.++.+|..   .++|+.|          
T Consensus       206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L  277 (788)
T PRK15387        206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL  277 (788)
T ss_pred             EEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhh
Confidence            4567777888877654  3677777777777777642   46677777777777766532   2344444          


Q ss_pred             ----------EcCCCcCCccchhHhcCCCcCEEEccCCcCCCCch
Q 031005           71 ----------QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA  105 (167)
Q Consensus        71 ----------~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~  105 (167)
                                ++.+|.++.+|.   ..++|+.|++++|.+..+|.
T Consensus       278 p~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        278 PALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             hhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCC
Confidence                      444444444433   12456777777776655543

>PLN03150 hypothetical protein; Provisional

Probab=99.03  E-value=1.1e-09  Score=88.85  Aligned_cols=100  Identities=29%  Similarity=0.546  Sum_probs=87.3

Q ss_pred             CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |+|+++.+. .+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|+.++.+++|+.|++++|.+
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            467788887 779999999999999999999984 8889999999999999999999 6788999999999999999988


Q ss_pred             C-ccchhHhcC-CCcCEEEccCCcC
Q 031005           78 G-ELPASICNL-IHLKSLCLNNNNI  100 (167)
Q Consensus        78 ~-~l~~~~~~~-~~l~~l~l~~n~l  100 (167)
                      . .+|..++.. .++..+++.+|..
T Consensus       503 ~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        503 SGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cccCChHHhhccccCceEEecCCcc
Confidence            6 778877653 4677889988864

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.01  E-value=5.2e-12  Score=100.92  Aligned_cols=134  Identities=25%  Similarity=0.336  Sum_probs=105.5

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCcc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      ++++|.+..+..++.-++.++.|++++|+++.+. ++..++.|..||++.|.+..+|. ...++ +|+.|.+++|.++.+
T Consensus       170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL  247 (1096)
T ss_pred             hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh
Confidence            4677888888888888999999999999999885 78889999999999999988765 22333 499999999998877


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChhhhccccchHHH
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQFQQMEGFEEF  138 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l  138 (167)
                       ..+.++.+|..||++.|-+..... ..+..+..|+.|++.|||+.+....+..-.+.+
T Consensus       248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl  305 (1096)
T KOG1859|consen  248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYL  305 (1096)
T ss_pred             -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHh
Confidence             567788999999999998844332 225567789999999999998765554444433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.99  E-value=9.9e-10  Score=82.01  Aligned_cols=106  Identities=28%  Similarity=0.366  Sum_probs=57.8

Q ss_pred             CCEEEeeCCcCcc-----ccccccCC-CCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCc-----cchhH
Q 031005           21 LERLSILGNMLTC-----LPETIGSL-RNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE-----LPASI   84 (167)
Q Consensus        21 L~~L~l~~n~l~~-----l~~~~~~l-~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~-----l~~~~   84 (167)
                      |+.|++++|.++.     +...+..+ ++|+.+++++|.++     .++..+..+.+|+.|++++|.++.     ++..+
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l  189 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL  189 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence            6666666666551     22334444 56666666666665     223344455566666666666541     22334


Q ss_pred             hcCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccCCCCh
Q 031005           85 CNLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        85 ~~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ...++|+++++++|.++....    ..+..+++|+.|++++|.+..
T Consensus       190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            445566666666666642221    123455666677776666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.3e-10  Score=84.75  Aligned_cols=121  Identities=23%  Similarity=0.342  Sum_probs=99.3

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC   94 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~   94 (167)
                      +..|..|+++|+++|.|+.+..+..-++.++.|+++.|.+..+.. +..+++|+.|++++|.+.++..+-..+-+.+.|.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            346778999999999999998888888999999999999998854 7789999999999999988866666778899999


Q ss_pred             ccCCcCCCCchHHhhCCCCCceEEcccCCCCh-hhhccccchHHH
Q 031005           95 LNNNNIGQIPANLLKDCKALQNISLHNNPISM-DQFQQMEGFEEF  138 (167)
Q Consensus        95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~l~~l  138 (167)
                      +++|.+.++..  +..+=+|..||+++|.|.. +....+.++..+
T Consensus       359 La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL  401 (490)
T KOG1259|consen  359 LAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL  401 (490)
T ss_pred             hhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHH
Confidence            99999977765  6677789999999999973 333344444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.97  E-value=5.4e-11  Score=77.34  Aligned_cols=105  Identities=22%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             cccCCCCCCCchhhhC---CCCCCEEEeeCCcCccccccc-cCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005            2 TLDGNRITSLPDELGQ---LVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~---l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      +|+.+++..+++....   ...|...++++|.+..+|..| ..++..+++++.+|.++.+|..+..++.|+.++++.|.+
T Consensus        33 dLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   33 DLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             ccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence            3444444444444332   223334455566555555444 233455556666666665555555555666666666655


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCCchH
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQIPAN  106 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~  106 (167)
                      ...|..+..+.++..|+..+|.+..++-.
T Consensus       113 ~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  113 NAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            55555555555555555555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=8.6e-10  Score=82.33  Aligned_cols=124  Identities=31%  Similarity=0.397  Sum_probs=76.0

Q ss_pred             cccCCCCC-----CCchhhhCC-CCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCC
Q 031005            2 TLDGNRIT-----SLPDELGQL-VRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCY   65 (167)
Q Consensus         2 ~l~~~~i~-----~l~~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~   65 (167)
                      +++++.+.     .+...+..+ ++|+.|++++|.++.     ++..+..+.+|+.+++++|.++     .++..+..++
T Consensus       114 ~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~  193 (319)
T cd00116         114 KLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC  193 (319)
T ss_pred             EeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence            45555554     123345555 778888888887772     3344566677888888887776     2334455556


Q ss_pred             CCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCc-hHHhhC----CCCCceEEcccCCCC
Q 031005           66 SLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIP-ANLLKD----CKALQNISLHNNPIS  125 (167)
Q Consensus        66 ~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~-~~~~~~----~~~L~~l~l~~n~~~  125 (167)
                      +|+.|++++|.++.     ++..+..+++|++|++++|.++... ..+...    .+.|+.+++++|.++
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            78888887777652     2334555677788888777775321 111122    357777777777775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=2.9e-10  Score=64.62  Aligned_cols=57  Identities=40%  Similarity=0.570  Sum_probs=28.2

Q ss_pred             CCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCc
Q 031005           43 NLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN   99 (167)
Q Consensus        43 ~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~   99 (167)
                      +|+.|++++|.++.+|+ .|..+++|+.+++++|.++.++ ..|..+++|+++++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555543 4444555555555555554442 344444455555554443

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=1.7e-10  Score=88.90  Aligned_cols=96  Identities=36%  Similarity=0.529  Sum_probs=47.6

Q ss_pred             ccCCCCCCCchhhhCCC-CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            3 LDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      +.++.+..+++...... +|+.|++++|++..+|..+..++.|+.|++++|.++.+|...+..+.|+.+++++|.+..+|
T Consensus       123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~  202 (394)
T COG4886         123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP  202 (394)
T ss_pred             cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence            44445555544444442 55555555555555544445555555555555555555444434555555555555555554


Q ss_pred             hhHhcCCCcCEEEccCC
Q 031005           82 ASICNLIHLKSLCLNNN   98 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n   98 (167)
                      ........+..+.+++|
T Consensus       203 ~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         203 PEIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhhhhhhhcCC
Confidence            43333333444444444

>PLN03210 Resistant to P

Probab=98.90  E-value=7e-09  Score=89.58  Aligned_cols=113  Identities=27%  Similarity=0.418  Sum_probs=60.8

Q ss_pred             CCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCC-cCCccchh
Q 031005            6 NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDN-LIGELPAS   83 (167)
Q Consensus         6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~-~~~~l~~~   83 (167)
                      +.++.+|..+ .+.+|..|++.++.+..++..+..+++|+.++++++. +..+| .+..+++|+.|++.+| .+..+|..
T Consensus       599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh
Confidence            3344444443 3455566666666655555555556666666665542 33443 2455566666666655 33455666


Q ss_pred             HhcCCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccC
Q 031005           84 ICNLIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        84 ~~~~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      +..+.+|+.|++++| .+..+|..+  .+++|+.|++++|
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence            666666666666654 345555431  4555555555554

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=8.7e-10  Score=84.94  Aligned_cols=123  Identities=40%  Similarity=0.545  Sum_probs=87.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|.+..+|..+..++.|+.|++++|+++.+|......+.|+.+++++|.++.+|........|+++.+++|.+...
T Consensus       145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~  224 (394)
T COG4886         145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL  224 (394)
T ss_pred             ccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec
Confidence            46778888888777888899999999999988888776677888888888888888876554455567776666633222


Q ss_pred             -----------------------chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           81 -----------------------PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        81 -----------------------~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                                             +..++.++.++.+++++|.+..++.  ++....++.+++++|.+.
T Consensus       225 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence                                   2334445556666777776666665  556666777777776665

>PLN03210 Resistant to P

Probab=98.86  E-value=1.8e-08  Score=87.05  Aligned_cols=110  Identities=26%  Similarity=0.407  Sum_probs=71.5

Q ss_pred             CCCchhhhCCCCCCEEEeeCC-cCccccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005            9 TSLPDELGQLVRLERLSILGN-MLTCLPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELPASICN   86 (167)
Q Consensus         9 ~~l~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~   86 (167)
                      ..+|.++.++++|+.|++++| .+..+|... .+++|+.|++++|. +..+|..   ..+|+.|++++|.++.+|..+..
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~  867 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEK  867 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhc
Confidence            356666677777777777765 355565544 56667777777653 2233322   34677777877777777777777


Q ss_pred             CCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccCC
Q 031005           87 LIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNNP  123 (167)
Q Consensus        87 ~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~  123 (167)
                      +++|+.|++++| .+..++.. ...++.|+.++++++.
T Consensus       868 l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        868 FSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCc
Confidence            888888888774 45666654 4566677777766653

syringae 6; Provisional

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.71  E-value=2.5e-08  Score=68.89  Aligned_cols=103  Identities=20%  Similarity=0.286  Sum_probs=67.5

Q ss_pred             CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhc-cCCCCCeEEcCCCcCCccc--hhHhcCCCcCEEE
Q 031005           18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG-SCYSLEELQANDNLIGELP--ASICNLIHLKSLC   94 (167)
Q Consensus        18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~~l~   94 (167)
                      +.+...+|+++|.+..+ +.|..++.|.+|.+.+|+|+++.+.+. -++.|..|.+.+|.+..+.  ..+..+++|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            33456677777776655 445667777777777777777755443 3556777777777776552  3556677777777


Q ss_pred             ccCCcCCCCch---HHhhCCCCCceEEccc
Q 031005           95 LNNNNIGQIPA---NLLKDCKALQNISLHN  121 (167)
Q Consensus        95 l~~n~l~~~~~---~~~~~~~~L~~l~l~~  121 (167)
                      +-+|++.....   .++-.+|++++||+++
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777743322   3455677777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.63  E-value=4.7e-09  Score=68.41  Aligned_cols=128  Identities=16%  Similarity=0.211  Sum_probs=98.6

Q ss_pred             CCCEEEeeCCcCccccc---cccCCCCCcEEEeeCCCCCccchhhcc-CCCCCeEEcCCCcCCccchhHhcCCCcCEEEc
Q 031005           20 RLERLSILGNMLTCLPE---TIGSLRNLVLLNVSNNKLKSLPESIGS-CYSLEELQANDNLIGELPASICNLIHLKSLCL   95 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~---~~~~l~~L~~l~l~~n~~~~~~~~~~~-l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l   95 (167)
                      .+..++++.|++..+++   .+.....|+.+++++|.+..+|+.|.. .+.++.+++++|.+..+|..+..++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            35677888888876654   345567788889999999999888755 45889999999999999999999999999999


Q ss_pred             cCCcCCCCchHHhhCCCCCceEEcccCCCChhhhcc-ccchHHHHHHHHHhhhh
Q 031005           96 NNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ-MEGFEEFEARRRKKFDK  148 (167)
Q Consensus        96 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~l~~~~~~~~~~  148 (167)
                      +.|++...|.-++. +.++-.|+..+|.+...+.+. .+.+..+...+...+..
T Consensus       108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             ccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence            99999888887544 888889998888777554443 34556665555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=9.2e-09  Score=79.92  Aligned_cols=121  Identities=31%  Similarity=0.407  Sum_probs=87.5

Q ss_pred             cCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh
Q 031005            4 DGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS   83 (167)
Q Consensus         4 ~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~   83 (167)
                      ..+.|.++-..+..+.+++.+++.+|++..+...+..+.+|+++++++|.|+.+ ..+..++.|+.|++.+|.+..+. .
T Consensus        80 ~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~  157 (414)
T KOG0531|consen   80 RQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS-G  157 (414)
T ss_pred             chhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc-C
Confidence            344444433446677888888888888888766577788888888888888876 34556666888888888887663 2


Q ss_pred             HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           84 ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +..+..++.+++++|.+..+.. . ...+..+..+++.+|.+...
T Consensus       158 ~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            4446788888888888877655 2 35677788888888877643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=1.3e-09  Score=87.56  Aligned_cols=123  Identities=21%  Similarity=0.242  Sum_probs=100.0

Q ss_pred             CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEcc
Q 031005           17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN   96 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~   96 (167)
                      .+..|.+.++++|.+..+..++.-++.++.|++++|++..+. .+..+++|+.||++.|.++.+|.--.--+.|..|.++
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence            355778889999999988888888999999999999999885 7889999999999999999887633333469999999


Q ss_pred             CCcCCCCchHHhhCCCCCceEEcccCCCChh-hhccccchHHHHHHH
Q 031005           97 NNNIGQIPANLLKDCKALQNISLHNNPISMD-QFQQMEGFEEFEARR  142 (167)
Q Consensus        97 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~~~  142 (167)
                      +|.++++..  +..+.+|+.||++.|-+..+ ....++.+..|...+
T Consensus       241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence            999998877  78999999999999999865 233444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=8.8e-08  Score=80.32  Aligned_cols=117  Identities=28%  Similarity=0.340  Sum_probs=91.6

Q ss_pred             CCCCCCchhhhCCCCCCEEEeeCCc--Ccccc-ccccCCCCCcEEEeeCC-CCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            6 NRITSLPDELGQLVRLERLSILGNM--LTCLP-ETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         6 ~~i~~l~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~~l~~L~~l~l~~n-~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      +.+..++.+. ..+.|++|-+..|.  +..++ ..|..++.|.+||+++| .+..+|+.++.+-+||+|++.++.+..+|
T Consensus       533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP  611 (889)
T KOG4658|consen  533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP  611 (889)
T ss_pred             cchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence            3444444432 44578899999886  55665 45788999999999976 66688999999999999999999999999


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCC
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP  123 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~  123 (167)
                      ..++++..|.+|++..+.-...++.+...+.+|+++.+-...
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999999999998887533335556668899998887765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.53  E-value=1.7e-07  Score=49.42  Aligned_cols=38  Identities=39%  Similarity=0.585  Sum_probs=22.7

Q ss_pred             CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc
Q 031005           20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL   57 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~   57 (167)
                      +|++|++++|+++.+|+.+..+++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45666666666666665566666666666666666544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.52  E-value=1.2e-07  Score=65.62  Aligned_cols=129  Identities=22%  Similarity=0.417  Sum_probs=94.2

Q ss_pred             CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc-CCCcCEEEcc
Q 031005           18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLN   96 (167)
Q Consensus        18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~-~~~l~~l~l~   96 (167)
                      ...-+.+++.+.++..+...-.-+.+...+|+++|.+..+ +.|..++.|..|.+++|+|+.+...+.. ++++..|.+.
T Consensus        18 ~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   18 SVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             hccccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            3346777888887776544223346788999999998876 4577889999999999999988554543 5789999999


Q ss_pred             CCcC---CCCchHHhhCCCCCceEEcccCCCChhh------hccccchHHHHHHHHHhhhhh
Q 031005           97 NNNI---GQIPANLLKDCKALQNISLHNNPISMDQ------FQQMEGFEEFEARRRKKFDKQ  149 (167)
Q Consensus        97 ~n~l---~~~~~~~~~~~~~L~~l~l~~n~~~~~~------~~~~~~l~~l~~~~~~~~~~~  149 (167)
                      +|.+   +.+.+  +..||+|+.|.+-+|+++...      ...++.++.|+..++...++.
T Consensus        97 nNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~  156 (233)
T KOG1644|consen   97 NNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE  156 (233)
T ss_pred             Ccchhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence            9988   44444  789999999999999998443      334455555555555444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.43  E-value=4.3e-07  Score=47.86  Aligned_cols=38  Identities=34%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             CCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005           43 NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus        43 ~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      +|++|++++|.++.+|+.+..+++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45556666666665555555555555555555555544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.41  E-value=7.8e-08  Score=74.78  Aligned_cols=119  Identities=26%  Similarity=0.369  Sum_probs=96.0

Q ss_pred             CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEcc
Q 031005           17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN   96 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~   96 (167)
                      .+..+..+.+..|.+..+-..+..+.++..+++.+|.+..+...+..+++|+.+++++|.|+.+ ..+..++.|..|++.
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheec
Confidence            3455666667888888765668889999999999999998855578899999999999999887 446667779999999


Q ss_pred             CCcCCCCchHHhhCCCCCceEEcccCCCChhhh---ccccchHHH
Q 031005           97 NNNIGQIPANLLKDCKALQNISLHNNPISMDQF---QQMEGFEEF  138 (167)
Q Consensus        97 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l  138 (167)
                      +|.+..+..  +..++.|+.+++++|.+.....   ..+..+..+
T Consensus       149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l  191 (414)
T KOG0531|consen  149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEEL  191 (414)
T ss_pred             cCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHH
Confidence            999998877  6779999999999999986654   444444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.3e-07  Score=72.12  Aligned_cols=40  Identities=25%  Similarity=0.291  Sum_probs=18.1

Q ss_pred             hCCCCCCEEEeeCCcCccc---cccccCCCCCcEEEeeCCCCC
Q 031005           16 GQLVRLERLSILGNMLTCL---PETIGSLRNLVLLNVSNNKLK   55 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~l---~~~~~~l~~L~~l~l~~n~~~   55 (167)
                      ..+++++.|+++.|-+...   -.-...+++|+.|+++.|++.
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~  185 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS  185 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence            3455555555555544421   122234445555555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=3.4e-07  Score=69.93  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             CCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCcC
Q 031005           17 QLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLK   91 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~   91 (167)
                      .+++++.|.++.|+++.  +...+..++++..|++..|. +........-+..|+.|++++|.+-.++  ...+.++.|.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            45566666666666652  33334445555555555552 1111111222344555555555544333  2334445555


Q ss_pred             EEEccCCcC
Q 031005           92 SLCLNNNNI  100 (167)
Q Consensus        92 ~l~l~~n~l  100 (167)
                      .++++.+.+
T Consensus       275 ~Lnls~tgi  283 (505)
T KOG3207|consen  275 QLNLSSTGI  283 (505)
T ss_pred             hhhccccCc
Confidence            555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.09  E-value=8.6e-07  Score=65.94  Aligned_cols=111  Identities=21%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             hhCCCCCCEEEeeCCcCcc--c---cccccCCCCCcEEEeeCCCCCccc--------------hhhccCCCCCeEEcCCC
Q 031005           15 LGQLVRLERLSILGNMLTC--L---PETIGSLRNLVLLNVSNNKLKSLP--------------ESIGSCYSLEELQANDN   75 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~--l---~~~~~~l~~L~~l~l~~n~~~~~~--------------~~~~~l~~L~~l~l~~~   75 (167)
                      +...++|+.+++++|.+..  +   ...+.+...|+.|.+.+|.+....              .....-+.|+.+...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3455566667777665542  1   122344556666666666555210              11122345666666666


Q ss_pred             cCCcc-----chhHhcCCCcCEEEccCCcCCC----CchHHhhCCCCCceEEcccCCCC
Q 031005           76 LIGEL-----PASICNLIHLKSLCLNNNNIGQ----IPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        76 ~~~~l-----~~~~~~~~~l~~l~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ++..-     ...++..+.++.+.+..|.|..    .-...+..+++|++|++..|.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            55422     2244455566666666665511    12233566666666666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.08  E-value=1.1e-06  Score=65.39  Aligned_cols=126  Identities=23%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             CcccCCCCC-CCchh----hhCCCCCCEEEeeCCcCcccc-----c---------cccCCCCCcEEEeeCCCCCc-----
Q 031005            1 MTLDGNRIT-SLPDE----LGQLVRLERLSILGNMLTCLP-----E---------TIGSLRNLVLLNVSNNKLKS-----   56 (167)
Q Consensus         1 L~l~~~~i~-~l~~~----~~~l~~L~~L~l~~n~l~~l~-----~---------~~~~l~~L~~l~l~~n~~~~-----   56 (167)
                      ++|+.|-+. +.++.    +.++..|+.|.+.+|.+....     .         -...-+.|+++...+|++..     
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence            456666665 33332    456777778888877766221     1         12334667777777777662     


Q ss_pred             cchhhccCCCCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCC----chHHhhCCCCCceEEcccCCCCh
Q 031005           57 LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQI----PANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        57 ~~~~~~~l~~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +...|..++.|..+.+..|.|..     +...+..+++|++||+++|.++..    -..++..+++|+.++++.+.++.
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence            23456666777777777776641     234666777777777777777322    22345666677777777777763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.00  E-value=6.1e-06  Score=69.56  Aligned_cols=108  Identities=24%  Similarity=0.342  Sum_probs=89.4

Q ss_pred             hCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCC--CCccchh-hccCCCCCeEEcCCC-cCCccchhHhcCCCcC
Q 031005           16 GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK--LKSLPES-IGSCYSLEELQANDN-LIGELPASICNLIHLK   91 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~--~~~~~~~-~~~l~~L~~l~l~~~-~~~~l~~~~~~~~~l~   91 (167)
                      ..+...+.+.+.+|.+..++..... +.|++|-+..|.  +..++.. |..++.|+.||+++| .+..+|..++.+-+|+
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            4567788888889988877654433 378899899986  5666554 678999999999987 5678999999999999


Q ss_pred             EEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           92 SLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +|+++++.+..+|.. ++.+..|.+|++..+...
T Consensus       599 yL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l  631 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRL  631 (889)
T ss_pred             cccccCCCccccchH-HHHHHhhheecccccccc
Confidence            999999999999998 789999999999987643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.97  E-value=1.5e-05  Score=65.68  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=88.5

Q ss_pred             hCCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCcC
Q 031005           16 GQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLK   91 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~   91 (167)
                      ..+|.|+.|.+.+-.+..  ......++++|..||+++++++.+ .+++.+++|+.|.+.+=.+....  ..+.++.+|+
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            468999999999987764  334457789999999999999887 67888999999988777776432  4678899999


Q ss_pred             EEEccCCcCCCCch------HHhhCCCCCceEEcccCCCChhhhc
Q 031005           92 SLCLNNNNIGQIPA------NLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        92 ~l~l~~n~l~~~~~------~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      +||++.......+.      +....+|.|+.||.+++.+.....+
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            99999887644332      1135689999999999998855433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=6e-06  Score=60.71  Aligned_cols=77  Identities=27%  Similarity=0.342  Sum_probs=57.8

Q ss_pred             CcccCCCCC---CCchhhhCCCCCCEEEeeCCcCccccccc-cCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCC
Q 031005            1 MTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQAND   74 (167)
Q Consensus         1 L~l~~~~i~---~l~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~   74 (167)
                      +||.+|.|+   ++..-+.++|.|++|+++.|+++.....+ .+..+|.++.+.+..+.  .+......++.+++++++.
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            578888887   45455689999999999999988644444 57788999999988776  3344556777888888777


Q ss_pred             CcC
Q 031005           75 NLI   77 (167)
Q Consensus        75 ~~~   77 (167)
                      |.+
T Consensus       156 N~~  158 (418)
T KOG2982|consen  156 NSL  158 (418)
T ss_pred             chh
Confidence            733

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00015  Score=56.12  Aligned_cols=31  Identities=32%  Similarity=0.378  Sum_probs=17.5

Q ss_pred             CcCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005           89 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        89 ~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      +|++|++++|.....|..   -..+|+.|.++.+
T Consensus       157 SLk~L~Is~c~~i~LP~~---LP~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNIILPEK---LPESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcccCccc---ccccCcEEEeccc
Confidence            566677776665444432   1245666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.73  E-value=2.3e-05  Score=56.27  Aligned_cols=102  Identities=26%  Similarity=0.316  Sum_probs=67.2

Q ss_pred             hCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCC--CCC-ccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCc
Q 031005           16 GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN--KLK-SLPESIGSCYSLEELQANDNLIGELP--ASICNLIHL   90 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n--~~~-~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l   90 (167)
                      ..+..++.+.+.+..++.+ ..+..+++|+.|.++.|  +++ .++.....+++|+++++++|+++.+.  ..+..+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            4455666666666666554 34556778888888888  444 33333344588889999888887542  345667778


Q ss_pred             CEEEccCCcCCCC---chHHhhCCCCCceEE
Q 031005           91 KSLCLNNNNIGQI---PANLLKDCKALQNIS  118 (167)
Q Consensus        91 ~~l~l~~n~l~~~---~~~~~~~~~~L~~l~  118 (167)
                      ..|++.+|+....   ...+|.-+++|+.++
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            8888888877443   235677777777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=3.2e-06  Score=61.56  Aligned_cols=105  Identities=28%  Similarity=0.399  Sum_probs=80.4

Q ss_pred             CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch--hHhcCCCcCEEEc
Q 031005           18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLCL   95 (167)
Q Consensus        18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~--~~~~~~~l~~l~l   95 (167)
                      +.+...|++.+|.++.| .-...++.|++|.++-|+|+.+ ..+..|..|++|+|..|.|.++..  -+.++++|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            45567788888888865 3346788999999999999988 447789999999999999987743  4578899999999


Q ss_pred             cCCcC-CCC----chHHhhCCCCCceEEcccCCCCh
Q 031005           96 NNNNI-GQI----PANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        96 ~~n~l-~~~----~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ..|+= +.-    ...++..+|+|+.||  +-+++.
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~Vte  129 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTE  129 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc--CccccH
Confidence            99986 222    235678889999886  445553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=6e-06  Score=60.18  Aligned_cols=85  Identities=28%  Similarity=0.310  Sum_probs=70.6

Q ss_pred             CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEc
Q 031005           41 LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISL  119 (167)
Q Consensus        41 l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l  119 (167)
                      +.+...|+..+|.++.+ .....|+.|+.|.|+-|.|+.+ ..+..+++|+.|+|..|.|.++.. .-+.++++|+.|++
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            45566778888888866 3456799999999999999988 557888999999999999987765 44789999999999


Q ss_pred             ccCCCChh
Q 031005          120 HNNPISMD  127 (167)
Q Consensus       120 ~~n~~~~~  127 (167)
                      ..||-+..
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            99998743

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00033  Score=54.26  Aligned_cols=99  Identities=26%  Similarity=0.341  Sum_probs=61.6

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCC-CCCccchhhccCCCCCeEEcCCC-cCCccchhHhcCCCcCE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKS   92 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~l~~L~~l~l~~~-~~~~l~~~~~~~~~l~~   92 (167)
                      +..+.+++.|++++|.++.+|.   -..+|+.|.+.+| .+..+|..+  ..+|++|++.+| .+..+|.      +|..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            3456788899999888888872   1246888888774 555566544  247888888877 5555554      3555


Q ss_pred             EEccCCc---CCCCchHHhhC------------------CCCCceEEcccCCCC
Q 031005           93 LCLNNNN---IGQIPANLLKD------------------CKALQNISLHNNPIS  125 (167)
Q Consensus        93 l~l~~n~---l~~~~~~~~~~------------------~~~L~~l~l~~n~~~  125 (167)
                      |++..+.   +..+|..+ ..                  .++|+.|+++++...
T Consensus       117 L~L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        117 LEIKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             EEeCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcc
Confidence            5554443   24444431 11                  146788888876643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=0.00013  Score=60.22  Aligned_cols=85  Identities=21%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccc--hhhccCCCCCeEEcCCCcCCccch-------hHh
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA-------SIC   85 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~--~~~~~l~~L~~l~l~~~~~~~l~~-------~~~   85 (167)
                      ..++|+|..||+++++++.+ ..+..+++|++|.+.+-.+....  ..+..+++|+.||++.......+.       .-.
T Consensus       169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~  247 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM  247 (699)
T ss_pred             hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence            46899999999999999988 77788999999999988887543  356789999999999887654332       223


Q ss_pred             cCCCcCEEEccCCcC
Q 031005           86 NLIHLKSLCLNNNNI  100 (167)
Q Consensus        86 ~~~~l~~l~l~~n~l  100 (167)
                      .++.|+.||.+++.+
T Consensus       248 ~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDI  262 (699)
T ss_pred             cCccccEEecCCcch
Confidence            478999999999987

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.30  E-value=0.00092  Score=43.14  Aligned_cols=103  Identities=20%  Similarity=0.377  Sum_probs=61.8

Q ss_pred             hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCc
Q 031005           14 ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL   90 (167)
Q Consensus        14 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l   90 (167)
                      .|....+|+.+.+.. .+..+. ..|..+.+++.+.+..+ +..++. .|..+++++.+.+.. .+..++ ..+..+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            467777888888874 566775 56788888999988774 777755 567777899999865 454443 356668889


Q ss_pred             CEEEccCCcCCCCchHHhhCCCCCceEEccc
Q 031005           91 KSLCLNNNNIGQIPANLLKDCKALQNISLHN  121 (167)
Q Consensus        91 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~  121 (167)
                      +.+++..+ +..++...+..+ .++.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            99998765 667777667777 888888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.17  E-value=0.0014  Score=42.25  Aligned_cols=103  Identities=25%  Similarity=0.478  Sum_probs=57.3

Q ss_pred             CCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hh
Q 031005            8 ITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-AS   83 (167)
Q Consensus         8 i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~   83 (167)
                      +..++ ..|..+..++.+.+..+ +..++ ..|...++++.+.+.. .+..++. .|..+..++.+.+..+ +..++ ..
T Consensus        23 ~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~   99 (129)
T PF13306_consen   23 IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS   99 (129)
T ss_dssp             --EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred             eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhh
Confidence            34442 34778889999999885 77776 5678888899999976 6666644 5677999999999775 65554 35


Q ss_pred             HhcCCCcCEEEccCCcCCCCchHHhhCCCCCc
Q 031005           84 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ  115 (167)
Q Consensus        84 ~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~  115 (167)
                      +.+. .++.+.+.. .+..++..+|.++++|.
T Consensus       100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--T--EEE-TT-B-SS----GGG------
T ss_pred             hcCC-CceEEEECC-CccEECCccccccccCC
Confidence            5555 899998876 77778888888887763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=3e-05  Score=57.15  Aligned_cols=108  Identities=25%  Similarity=0.327  Sum_probs=52.6

Q ss_pred             hhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCC-CCCcc--chhhccCCCCCeEEcCCCcCC--ccchhHhcC-
Q 031005           15 LGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNN-KLKSL--PESIGSCYSLEELQANDNLIG--ELPASICNL-   87 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n-~~~~~--~~~~~~l~~L~~l~l~~~~~~--~l~~~~~~~-   87 (167)
                      +..+.+|+-|.+.++.+.. +...+..-..|..++++.+ .+++.  .-.+.+++.|..|+++.+.+.  .+-..+... 
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            3455555556666665553 4444555566666666654 34422  123455666666666666432  111111111 


Q ss_pred             CCcCEEEccCCcC---CCCchHHhhCCCCCceEEcccC
Q 031005           88 IHLKSLCLNNNNI---GQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        88 ~~l~~l~l~~n~l---~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      .+++.|+++|+.=   ...-.....+++.+.+||++.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            2555555555531   1111222455666666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00053  Score=49.45  Aligned_cols=89  Identities=27%  Similarity=0.324  Sum_probs=62.8

Q ss_pred             ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC---ccchhHhcCCCcCEEEccCCcC---CCCchHH
Q 031005           34 LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG---ELPASICNLIHLKSLCLNNNNI---GQIPANL  107 (167)
Q Consensus        34 l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~---~l~~~~~~~~~l~~l~l~~n~l---~~~~~~~  107 (167)
                      +....-.+..|+.+.+.+..++.+ ..+..+++|++|.++.|...   .++.-...+++++++++++|.+   .++.+  
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--
Confidence            333344455677777777777655 34567889999999999443   3333344459999999999988   45554  


Q ss_pred             hhCCCCCceEEcccCCCC
Q 031005          108 LKDCKALQNISLHNNPIS  125 (167)
Q Consensus       108 ~~~~~~L~~l~l~~n~~~  125 (167)
                      ...+.+|..|++..+..+
T Consensus       112 l~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhcchhhhhcccCCcc
Confidence            567778889998888776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00016  Score=53.38  Aligned_cols=121  Identities=20%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             cccCCCCC-CCchhhhCCCCCCEEEeeCCc-Ccc--ccccccCCCCCcEEEeeCCCCCc--cchhhcc-CCCCCeEEcCC
Q 031005            2 TLDGNRIT-SLPDELGQLVRLERLSILGNM-LTC--LPETIGSLRNLVLLNVSNNKLKS--LPESIGS-CYSLEELQAND   74 (167)
Q Consensus         2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~-l~~--l~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~-l~~L~~l~l~~   74 (167)
                      .+.++++. .+...++....|+.|+++++. +++  +.--+..++.|+.|+++.|.+..  +.-.+.. -.+|+.|+++|
T Consensus       216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence            34555555 455667888889999999874 664  23345777888888888886651  1111111 23466666666


Q ss_pred             CcCC----ccchhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccC
Q 031005           75 NLIG----ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        75 ~~~~----~l~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      ++-.    .+..-..+++++.+||+++|- ++.---.++...+-|+++.++.+
T Consensus       296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence            5221    122223455666666665552 32211222444455555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.88  E-value=0.0005  Score=30.34  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=10.9

Q ss_pred             CCEEEeeCCcCcccccccc
Q 031005           21 LERLSILGNMLTCLPETIG   39 (167)
Q Consensus        21 L~~L~l~~n~l~~l~~~~~   39 (167)
                      |++|++++|+++.+|+.|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4566666666665555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.59  E-value=0.0032  Score=46.22  Aligned_cols=40  Identities=30%  Similarity=0.451  Sum_probs=18.2

Q ss_pred             hCCCCCCEEEeeCCcCcc-cc----ccccCCCCCcEEEeeCCCCC
Q 031005           16 GQLVRLERLSILGNMLTC-LP----ETIGSLRNLVLLNVSNNKLK   55 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~-l~----~~~~~l~~L~~l~l~~n~~~   55 (167)
                      ..+|+|+.++++.|.+.. .|    +.+.+-..|..|.+++|.+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            345555555555554442 21    12333444555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.55  E-value=0.001  Score=29.31  Aligned_cols=19  Identities=42%  Similarity=0.663  Sum_probs=11.5

Q ss_pred             CcEEEeeCCCCCccchhhc
Q 031005           44 LVLLNVSNNKLKSLPESIG   62 (167)
Q Consensus        44 L~~l~l~~n~~~~~~~~~~   62 (167)
                      |+.|++++|.++.+|+.|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5666666666666655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.36  E-value=4.5e-05  Score=54.37  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             cccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCce
Q 031005           37 TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN  116 (167)
Q Consensus        37 ~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~  116 (167)
                      .+......+.||++.|.+..+...|+-+..+..++++.|.+..+|..++....+.++++..|.+...|.. +...++++.
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS-QKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc-ccccCCcch
Confidence            4445556666666666666555556556666666777666666666666666666667667766666665 566666777


Q ss_pred             EEcccCCCChhh
Q 031005          117 ISLHNNPISMDQ  128 (167)
Q Consensus       117 l~l~~n~~~~~~  128 (167)
                      +++.+|++....
T Consensus       116 ~e~k~~~~~~~~  127 (326)
T KOG0473|consen  116 NEQKKTEFFRKL  127 (326)
T ss_pred             hhhccCcchHHH
Confidence            777777665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0047  Score=45.92  Aligned_cols=125  Identities=21%  Similarity=0.265  Sum_probs=68.6

Q ss_pred             CcccCCCCCCCchhh-hCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCcc--ch----hhc---------
Q 031005            1 MTLDGNRITSLPDEL-GQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSL--PE----SIG---------   62 (167)
Q Consensus         1 L~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~--~~----~~~---------   62 (167)
                      |++++|++..-...+ ....+|+.|.+.+..+.  .....+..++.++.+.++.|.+..+  .+    .+.         
T Consensus       102 LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~  181 (418)
T KOG2982|consen  102 LNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQL  181 (418)
T ss_pred             eeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcC
Confidence            567888876322222 45678888888888765  3555667778888888888755522  11    010         


Q ss_pred             ---------------cCCCCCeEEcCCCcCCccc--hhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCC
Q 031005           63 ---------------SCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPI  124 (167)
Q Consensus        63 ---------------~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~  124 (167)
                                     -++++..+-++.+.+....  ...-.++.+--|+++.+.|.+... ..+++++.++.+.++.+|+
T Consensus       182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence                           0133333344444333221  122233444455666666644332 3356667777777777766


Q ss_pred             C
Q 031005          125 S  125 (167)
Q Consensus       125 ~  125 (167)
                      .
T Consensus       262 ~  262 (418)
T KOG2982|consen  262 S  262 (418)
T ss_pred             c
Confidence            4

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.20  E-value=0.0059  Score=44.87  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=89.6

Q ss_pred             cccCCCCC-CCchh----hhCCCCCCEEEeeCCcCccccc-----c---------ccCCCCCcEEEeeCCCCCccch---
Q 031005            2 TLDGNRIT-SLPDE----LGQLVRLERLSILGNMLTCLPE-----T---------IGSLRNLVLLNVSNNKLKSLPE---   59 (167)
Q Consensus         2 ~l~~~~i~-~l~~~----~~~l~~L~~L~l~~n~l~~l~~-----~---------~~~l~~L~~l~l~~n~~~~~~~---   59 (167)
                      +|+.|.+. ..|..    +++-..|..|.+++|.+..+..     +         ...-+.|+++...+|++...|.   
T Consensus        98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~  177 (388)
T COG5238          98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS  177 (388)
T ss_pred             eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence            57777776 34433    5778889999999998774421     1         1235789999999998885432   


Q ss_pred             --hhccCCCCCeEEcCCCcCCcc------chhHhcCCCcCEEEccCCcCCCCc----hHHhhCCCCCceEEcccCCCChh
Q 031005           60 --SIGSCYSLEELQANDNLIGEL------PASICNLIHLKSLCLNNNNIGQIP----ANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        60 --~~~~l~~L~~l~l~~~~~~~l------~~~~~~~~~l~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                        .+.....|+.+.+..|.|..-      -..++.+.+|.+||++.|.++...    ..++-.++.|+.|.+..+.++..
T Consensus       178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence              334456799999999988621      135567889999999999884332    34455677789999998888754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.93  E-value=0.006  Score=25.03  Aligned_cols=15  Identities=40%  Similarity=0.507  Sum_probs=6.3

Q ss_pred             CCCEEEeeCCcCccc
Q 031005           20 RLERLSILGNMLTCL   34 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l   34 (167)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.69  E-value=0.00014  Score=52.00  Aligned_cols=92  Identities=23%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             CCCc-hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcC
Q 031005            9 TSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL   87 (167)
Q Consensus         9 ~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~   87 (167)
                      .++| ..+..+.+.+.||++.|++..+-..|..+..+..++++.|.+..+|..+.....++.+++..|.....|..++..
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~  110 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE  110 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence            3444 346788889999999999888878888888999999999999999999988888999999999998899999999


Q ss_pred             CCcCEEEccCCcC
Q 031005           88 IHLKSLCLNNNNI  100 (167)
Q Consensus        88 ~~l~~l~l~~n~l  100 (167)
                      ++++++++-+|++
T Consensus       111 ~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  111 PHPKKNEQKKTEF  123 (326)
T ss_pred             CCcchhhhccCcc
Confidence            9999999999986

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.39  E-value=0.02  Score=26.09  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=13.8

Q ss_pred             CCcCEEEccCCcCCCCchHHh
Q 031005           88 IHLKSLCLNNNNIGQIPANLL  108 (167)
Q Consensus        88 ~~l~~l~l~~n~l~~~~~~~~  108 (167)
                      ++|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456667777777776666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.39  E-value=0.02  Score=26.09  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=13.8

Q ss_pred             CCcCEEEccCCcCCCCchHHh
Q 031005           88 IHLKSLCLNNNNIGQIPANLL  108 (167)
Q Consensus        88 ~~l~~l~l~~n~l~~~~~~~~  108 (167)
                      ++|++|++++|.+..+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456667777777776666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.54  E-value=0.12  Score=22.93  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=10.0

Q ss_pred             CCCceEEcccCCCChhhh
Q 031005          112 KALQNISLHNNPISMDQF  129 (167)
Q Consensus       112 ~~L~~l~l~~n~~~~~~~  129 (167)
                      ++|+.|++++|.++.+..
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            466777777777665543

...

>TIGR00864 PCC polycystin cation channel protein

Probab=87.19  E-value=0.49  Score=44.95  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             EccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           94 CLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        94 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ||++|.|..++..+|..+++|+.|+|++||+.|+.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC   35 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC   35 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence            57788888888888888888888888888888763

Note: this model has been restricted to the amino half because for technical reasons.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.82  E-value=0.59  Score=21.37  Aligned_cols=16  Identities=25%  Similarity=0.372  Sum_probs=8.8

Q ss_pred             CCCCEEEeeCCcCccc
Q 031005           19 VRLERLSILGNMLTCL   34 (167)
Q Consensus        19 ~~L~~L~l~~n~l~~l   34 (167)
                      .+|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455566666655543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.38  E-value=0.46  Score=21.73  Aligned_cols=17  Identities=47%  Similarity=0.712  Sum_probs=9.3

Q ss_pred             CCCEEEeeCCcCccccc
Q 031005           20 RLERLSILGNMLTCLPE   36 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~   36 (167)
                      +|+.|+.++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45555555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.94  E-value=0.38  Score=33.95  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             CCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC-Cccc-hhHh-cCCCcCEEEccCCc-CCCCchHHhhCCCCCceE
Q 031005           43 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI-GELP-ASIC-NLIHLKSLCLNNNN-IGQIPANLLKDCKALQNI  117 (167)
Q Consensus        43 ~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~-~~l~-~~~~-~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l  117 (167)
                      .++.+|.++..|... -+.+.+++.++.+.+.++.- .... ..++ -.++|+.|++++|. |++---..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            355666666655533 23455566666666665532 2110 1111 23567777777663 454444445666666666


Q ss_pred             Ecc
Q 031005          118 SLH  120 (167)
Q Consensus       118 ~l~  120 (167)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		9e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RXXXXXXXXXXXXXXXPES 60
           T+D   +  LPD   Q   LE L++  N L  LP +I SL R               PE 
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 61  IGSCYSLEELQANDNL---------IGELPASICNLIHLKSLCLNNNNIGQIPANL---- 107
           + S  +  E Q   NL         I  LPASI NL +LKSL + N+ +  +   +    
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 108 ------LKDCKALQNI 117
                 L+ C AL+N 
Sbjct: 230 KLEELDLRGCTALRNY 245

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
           + L+GN +T LP E+  L  L  L +  N LT L                       P  
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-----------------------PAE 288
Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNN 98
           +GSC+ L+     DN++  LP    NL +L+ L +  N
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 2e-25
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS-NNKLKSLPESI 61
           L+   I SLP  +  L  L+ L I  + L+ L   I  L  L  L++     L++ P   
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 62  GSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISL 119
           G    L+ L   + + +  LP  I  L  L+ L L    N+ ++P+  +    A   I +
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILV 308

Query: 120 HNNPISM 126
             +  + 
Sbjct: 309 PPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 4e-24
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 6   NRITSLPDELGQ---------LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS 56
             +T LP+ L           LV L+ L +    +  LP +I +L+NL  L + N+ L +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220

Query: 57  LPESIGSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKAL 114
           L  +I     LEEL       +   P        LK L L + +N+  +P ++ +    L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQL 279

Query: 115 QNISLHNNP 123
           + + L    
Sbjct: 280 EKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 5e-23
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 2   TLDGNRITSLPDELGQL--VRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 59
           T  G  + +  D L          L +    L   P+    L +L  + +    L  LP+
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 60  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANL--------LKD 110
           ++     LE L    N +  LPASI +L  L+ L +     + ++P  L         + 
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 111 CKALQNISLHNNPIS 125
              LQ++ L    I 
Sbjct: 182 LVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 5e-23
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILG-NMLTCLPETIGSLRNLVLLNVSN-NKLKSLPES 60
           +  + +++L   +  L +LE L + G   L   P   G    L  L + + + L +LP  
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 61  IGSCYSLEELQANDNL-IGELPASICNLIHLKSLCLNNNNIGQIPANLL 108
           I     LE+L     + +  LP+ I  L     + +  +   Q+  +  
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 7e-16
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 6   NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY 65
             +    D L Q    +R                +  N  +   +   LK+  + +    
Sbjct: 23  TALRPYHDVLSQW---QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDAT 79

Query: 66  S--LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
                 L+     + + P     L HL+ + ++   + ++P   ++    L+ ++L  NP
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNP 138

Query: 124 IS 125
           + 
Sbjct: 139 LR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 7/97 (7%), Positives = 18/97 (18%), Gaps = 5/97 (5%)

Query: 31  LTCLPETIGSLRNLVLLNVSN-NKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIH 89
           +               L       L+   + +      +     D           N  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 90  LKSLCLNNNNIGQIPANLLKDC-KALQNISLHNNPIS 125
            +        +      L          + L + P+ 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 2e-23
 Identities = 44/127 (34%), Positives = 58/127 (45%), Gaps = 14/127 (11%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +D N++T LP+    L   E ++   N LT LPE   SL     L+V NN+L  LPE   
Sbjct: 127 VDNNQLTMLPELPALL---EYINADNNQLTMLPELPTSLEV---LSVRNNQLTFLPELPE 180

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLC----LNNNNIGQIPANLLKDCKALQNIS 118
              SLE L  + NL+  LPA      H +          N I  IP N+L        I 
Sbjct: 181 ---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTII 236

Query: 119 LHNNPIS 125
           L +NP+S
Sbjct: 237 LEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.8 bits (225), Expect = 5e-22
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
            D N++T LP+       LE LS+  N LT LPE   SL     L+VS N L+SLP    
Sbjct: 147 ADNNQLTMLPELPT---SLEVLSVRNNQLTFLPELPESLEA---LDVSTNLLESLPAVPV 200

Query: 63  SCYSLEE----LQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
             +  EE     +  +N I  +P +I +L    ++ L +N +       L    A  +  
Sbjct: 201 RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 119 LHNNPISMDQFQQM 132
                 SM   QQ 
Sbjct: 261 GPRIYFSMSDGQQN 274

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 5e-22
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 16/123 (13%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N + SLP+    L   E L    N L+ LPE   SL++   L+V NN+L  LPE   
Sbjct: 87  ITQNALISLPELPASL---EYLDACDNRLSTLPELPASLKH---LDVDNNQLTMLPELPA 140

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               LE + A++N +  LP    +   L+ L + NN +  +P       ++L+ + +  N
Sbjct: 141 ---LLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPELP----ESLEALDVSTN 190

Query: 123 PIS 125
            + 
Sbjct: 191 LLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 3e-20
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 15/123 (12%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+   ++SLPD L    ++  L I  N L  LPE   SL     L+  +N+L +LPE   
Sbjct: 66  LNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEY---LDACDNRLSTLPELPA 120

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              SL+ L  ++N +  LP        L+ +  +NN +  +P        +L+ +S+ NN
Sbjct: 121 ---SLKHLDVDNNQLTMLPELPAL---LEYINADNNQLTMLPELP----TSLEVLSVRNN 170

Query: 123 PIS 125
            ++
Sbjct: 171 QLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 5e-15
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 6   NRITSLPDELGQLV-RLERLSILGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPESIG 62
           N I+    +      + E+ ++ G         +    +     L ++   L SLP+++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP 79

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               +  L+   N +  LP    +   L+ L   +N +  +P         L+++ + NN
Sbjct: 80  P--QITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPAS----LKHLDVDNN 130

Query: 123 PIS 125
            ++
Sbjct: 131 QLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSIL----GNMLTCLPETIGSLRNLVLLNVSNNKLKSLP 58
           +  N + SLP    +    E   I      N +T +PE I SL     + + +N L S  
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

Query: 59  ESIGSCYSLEELQANDNLIGELPASICNLIHLK 91
               S  + +       +   +     N +H  
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 2e-22
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 20/140 (14%)

Query: 3   LDGNRITSLPDE--------LGQLVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNN 52
           L  N +TS+P+               L  + +  N LT L +     +L  L  ++VS N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 53  KLKSLPESIGSCYSLEELQANDNLI-------GELPASICNLIHLKSLCLNNNNIGQIPA 105
              S P    +   L+                 + P  I     L  L + +N+I ++  
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 106 NLLKDCKALQNISLHNNPIS 125
            L      L  + + +NP  
Sbjct: 824 KLTPQ---LYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 4e-22
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 4   DGNRITSLPDELGQLVRLERLSILGNMLT----------CLPETIGSLRNLVLLNVSNNK 53
           +   +T LPD L  L  L+ L+I  N              L +   +   + +  +  N 
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 54  LKSLPES--IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDC 111
           L+  P S  +     L  L    N +  L  +    + L  L L+ N I +IP +     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 112 KALQNISLHNNPIS 125
             ++ +   +N + 
Sbjct: 619 DQVEGLGFSHNKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.1 bits (213), Expect = 2e-20
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPE 59
           +    N++  L    G  V+L  L +  N +  +PE   +    +  L  S+NKLK +P 
Sbjct: 578 LDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 60  --SIGSCYSLEELQANDNLIGELPASI------CNLIHLKSLCLNNNNIGQIPANLLKDC 111
             +  S Y +  +  + N IG    +I         I+  ++ L+ N I + P  L    
Sbjct: 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 112 KALQNISLHNNPIS 125
             +  I L NN ++
Sbjct: 697 SPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.2 bits (208), Expect = 1e-19
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           +  N +   P    L ++V+L  L  + N +  L    G+   L  L +  N+++ +PE 
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPED 613

Query: 61  IGS-CYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKD-----CK 112
             +    +E L  + N +  +P   +  ++  + S+  + N IG    N+          
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 113 ALQNISLHNNPIS 125
               ++L  N I 
Sbjct: 674 NASTVTLSYNEIQ 686

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.8 bits (194), Expect = 7e-18
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 18/137 (13%)

Query: 3   LDGNRITSLPDELG------QLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLK 55
              N+I S    +       + +    +++  N +   P E   +   +  + +SNN + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 56  SLPE--------SIGSCYSLEELQANDNLIGELPASI--CNLIHLKSLCLNNNNIGQIPA 105
           S+PE        +  + Y L  +    N +  L        L +L ++ ++ N     P 
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 106 NLLKDCKALQNISLHNN 122
             L     L+   + + 
Sbjct: 771 QPLN-SSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 2e-17
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              NRIT +   + +L +L+ +    +  T     +         +    + ++   S  
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---DANSDYAKQYENEELSWS 488

Query: 63  SCYSLEELQ-ANDNLIGELPASICNLIHLKSLCLNNNNIGQIP---------ANLLKDCK 112
           +   L +++  N   + +LP  + +L  L+SL +  N               A+      
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 113 ALQNISLHNNPIS 125
            +Q   +  N + 
Sbjct: 549 KIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 11/133 (8%)

Query: 3   LDGNRITSLPDEL--GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS-------NNK 53
           L  N++TSL D+     L  L  + +  N  +  P    +   L    +        N  
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 54  LKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 113
           L+  P  I +C SL +LQ   N I ++   +     L  L + +N    I    +     
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP--QLYILDIADNPNISIDVTSVCPYIE 852

Query: 114 LQNISLHNNPISM 126
                L  +    
Sbjct: 853 AGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.8 bits (181), Expect = 5e-16
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
                +  +  +    ++  ++  L N +T + + I  L  L ++  +N+       ++ 
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHN 121
                +              S  NL  L  + L N  N+ Q+P   L D   LQ++++  
Sbjct: 469 ---WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIAC 524

Query: 122 NPIS 125
           N   
Sbjct: 525 NRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 6e-10
 Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 34/165 (20%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIG---------------------- 39
           L G      +PD +GQL  L+ LS   +  T      G                      
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 40  ----SLRNLVLLNVSNNKLKSLPESIGSCY------SLEELQANDNLIGELPASICNLIH 89
                 + L L ++  + +   PE               ++    N I  +  +I  L  
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 90  LKSLCLNNNNIGQIPANL-LKDCKALQNISLHNNPISMDQFQQME 133
           L+ +   N+        +  +D  +       N  +S    + + 
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 10/119 (8%)

Query: 14  ELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQA 72
           +L    R+  LS+ G      +P+ IG L  L +L+   +         G      ++  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 73  N---------DNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
                       +  +    +     L+     N  +  I  +     K  Q  +L N 
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 60  SIGSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
            + +   +  L  A     G +P +I  L  LK L    ++          +        
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 119 LHNNPISMDQFQ 130
              + I M   +
Sbjct: 378 ERKHRIRMHYKK 389

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 3e-22
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLN------------- 48
               N++TSLP     L   + LS+  N L  LP     L  L   N             
Sbjct: 167 WAYNNQLTSLPMLPSGL---QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGL 223

Query: 49  ----VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 104
               VS N+L SLP        L+EL  + N +  LP     L+ L    +  N + ++P
Sbjct: 224 KELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLP 277

Query: 105 ANLLKDCKALQNISLHNNPIS 125
            +L+    +   ++L  NP+S
Sbjct: 278 ESLIH-LSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 8e-22
 Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVL--------------- 46
           ++  N++ SLP    +L    +L    N LT LP     L+ L++               
Sbjct: 187 SVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSEL 243

Query: 47  --LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 104
             L VS N+L SLP        L  L    N +  LP S+ +L    ++ L  N + +  
Sbjct: 244 KELMVSGNRLTSLPMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

Query: 105 ANLLKDCKALQNISLHNNPISMDQFQQ 131
              L++  +    S       M     
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 1e-20
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           ++  N++ SLP    +L    +L    N LT LP     L+    L+VS+N+L SLP   
Sbjct: 147 SVSDNQLASLPALPSEL---CKLWAYNNQLTSLPMLPSGLQE---LSVSDNQLASLPTLP 200

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
                L +L A +N +  LPA       LK L ++ N +  +P         L+ + +  
Sbjct: 201 S---ELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVLP----SELKELMVSG 250

Query: 122 NPIS 125
           N ++
Sbjct: 251 NRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 4e-19
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  + +T+LPD L     +  L I  N LT LP     LR L    VS N+L SLP    
Sbjct: 47  VGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPVLPP 101

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L         +  LP+       L  L +  N +  +P         LQ +S+ +N
Sbjct: 102 GLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPVLP----PGLQELSVSDN 151

Query: 123 PIS 125
            ++
Sbjct: 152 QLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 30/140 (21%)

Query: 3   LDGNRITSLPDELGQLVRLE-----------------RLSILGNMLTCLPETIGSLRNLV 45
           + GN++TSLP     L+ L                  +L I GN LT LP     L+   
Sbjct: 88  VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQE-- 145

Query: 46  LLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 105
            L+VS+N+L SLP        L +L A +N +  LP        L+ L +++N +  +P 
Sbjct: 146 -LSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPT 198

Query: 106 NLLKDCKALQNISLHNNPIS 125
              +    L  +  +NN ++
Sbjct: 199 LPSE----LYKLWAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 8e-14
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 8/106 (7%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           + GNR+TSLP     L     LS+  N LT LPE++  L +   +N+  N L        
Sbjct: 248 VSGNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 304

Query: 63  SCYSLEELQAN-----DNLIGELPASICNLIHLKSLCLNNNNIGQI 103
              +     +      D      P     L    +  L     G+ 
Sbjct: 305 REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEP 350

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 23  RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82
           R +++  M  CL           +LNV  + L +LP+ + +   +  L   DN +  LPA
Sbjct: 27  RAAVVQKMRACL------NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA 78

Query: 83  SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
                  L++L ++ N +  +P  L      L   S     + 
Sbjct: 79  LPPE---LRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLTHLP 117

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 6e-22
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE-- 59
              N++       G  ++L  L++  N +T +P    G    +  L+ ++NKLK +P   
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 60  SIGSCYSLEELQANDNLI--------GELPASICNLIHLKSLCLNNNNIGQIPANLLKDC 111
              S   +  +  + N I          L  +    I++ S+ L+NN I + P  L    
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 112 KALQNISLHNNPIS 125
             L +I+L  N ++
Sbjct: 457 SPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 3   LDGNRITSLP--------DELGQLVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNN 52
           L GN +T +P        +       L  + +  N LT L +     +L  LV +++S N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 53  KLKSLPESIGSCYSLEELQANDN-------LIGELPASICNLIHLKSLCLNNNNIGQIPA 105
                P    +  +L+     +         + E P  I     L  L + +N+I ++  
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

Query: 106 NLLKDCKALQNISLHNNPIS 125
            +  +   +  + + +NP  
Sbjct: 584 KITPN---ISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 5e-21
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE---------TIGSLRNLVLLNVSNNK 53
            +   +T LP  L  L  ++ +++  N      +                + ++ +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 54  LKSL--PESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDC 111
           LK+     S+     L  L+   N +     +  + I L SL L  N I +IPAN     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 112 KALQNISLHNNPIS 125
           + ++N+S  +N + 
Sbjct: 377 EQVENLSFAHNKLK 390

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP--- 58
           +DG     L     + + +  +++  N ++  P E   +   L  +N+  N L  +P   
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 59  -----ESIGSCYSLEELQANDNLIGELPASI--CNLIHLKSLCLNNNNIGQIPANLLKDC 111
                E+  + Y L  +    N + +L        L +L  + L+ N+  + P   L   
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-S 535

Query: 112 KALQNISLHNN 122
             L+   + N 
Sbjct: 536 STLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 11/132 (8%)

Query: 3   LDGNRITSLPDEL--GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVS-------NNK 53
           L  N++T L D+     L  L  + +  N  +  P    +   L    +        N  
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 54  LKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 113
           L+  PE I  C SL +LQ   N I ++   I    ++  L + +N    I  + +     
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 114 LQNISLHNNPIS 125
                L  +   
Sbjct: 613 AGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 13/132 (9%)

Query: 6   NRITSLPDELGQLVRLERLSILG-NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE----- 59
            +  +   +   L  L  + +     LT LP  + +L  + L+NV+ N+  S  +     
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 60  ----SIGSCYSLEELQANDNLI--GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 113
                      ++ +    N +    +  S+  +  L  L    N +             
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS-EIK 354

Query: 114 LQNISLHNNPIS 125
           L +++L  N I+
Sbjct: 355 LASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 8   ITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSL 67
             S+       ++  ++  L N +T + + +  L  L    + N+    + E+I   +  
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF--VAENICEAWEN 229

Query: 68  EELQANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           E  +              NL  L  + + N  N+ ++P  L      +Q I++  N   
Sbjct: 230 ENSEYAQQY-KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 12/138 (8%), Positives = 38/138 (27%), Gaps = 9/138 (6%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL------KS 56
              N     P  +   +  E+   +          +         ++  + +      KS
Sbjct: 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 57  LPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
           + +S        ++    N I  +  ++  L  L+   + N+    +      ++  +  
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 116 NISLHNNPISMDQFQQME 133
                   +  D  + + 
Sbjct: 235 AQQYKTEDLKWDNLKDLT 252

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 11/133 (8%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS 56
           L+G   +  +PD +GQL  LE L++  +          P+ I +  +           + 
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 57  LPESIGSCYSLEELQAND----NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCK 112
                       +L  +          +  S    +    +   +NNI  +   +++   
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LT 206

Query: 113 ALQNISLHNNPIS 125
            L+   + N+P  
Sbjct: 207 KLRQFYMGNSPFV 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 25/109 (22%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
             GNR     P+ +     L +L I  N +  + E I    N+ +L++ +N   S+    
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISID--- 603

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKD 110
                               + +C  I      L  +    I      D
Sbjct: 604 -------------------LSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 6/128 (4%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPE 59
           L  N ++ ++P  LG L +L  L +  NML   +P+ +  ++ L  L +  N L   +P 
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 60  SIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNI 117
            + +C +L  +  ++N L GE+P  I  L +L  L L+NN+  G IPA  L DC++L  +
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWL 543

Query: 118 SLHNNPIS 125
            L+ N  +
Sbjct: 544 DLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 4e-19
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 8/130 (6%)

Query: 3   LDGNRIT-SLPDELGQ--LVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SL 57
           L  N  +  +   L Q     L+ L +  N  T  +P T+ +   LV L++S N L  ++
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434

Query: 58  PESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
           P S+GS   L +L+   N L GE+P  +  +  L++L L+ N++ G+IP+  L +C  L 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLN 493

Query: 116 NISLHNNPIS 125
            ISL NN ++
Sbjct: 494 WISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPE 59
           + GN+++      +     L+ L+I  N     +P     L++L  L+++ NK    +P+
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPD 287

Query: 60  SI-GSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQN 116
            + G+C +L  L  + N   G +P    +   L+SL L++NN  G++P + L   + L+ 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 117 ISLHNNPIS 125
           + L  N  S
Sbjct: 348 LDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 9e-15
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETI-GSLRNLVLLNVSNNKLK-SLP 58
           +  N+    +P     L  L+ LS+  N  T  +P+ + G+   L  L++S N    ++P
Sbjct: 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 59  ESIGSCYSLEELQANDN-LIGELPA-SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
              GSC  LE L  + N   GELP  ++  +  LK L L+ N   G++P +L     +L 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 116 NISLHNNPIS 125
            + L +N  S
Sbjct: 372 TLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 8e-14
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 12/130 (9%)

Query: 3   LDGNRIT-SLPDEL---GQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLKSL 57
           L  N I+ +             L+ L+I GN ++  +   +    NL  L+VS+N   + 
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215

Query: 58  PESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
              +G C +L+ L  + N L G+   +I     LK L +++N   G IP   LK    LQ
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQ 272

Query: 116 NISLHNNPIS 125
            +SL  N  +
Sbjct: 273 YLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 10  SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK---SLPESIGSCYS 66
           ++   L  L  LE L +  + +           +L  L++S N L    +   S+GSC  
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 67  LEELQANDN-LIGELPASI-CNLIHLKSLCLNNNNI-GQIPANL--LKDCKALQNISLHN 121
           L+ L  + N L      S    L  L+ L L+ N+I G           C  L+++++  
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 122 NPIS 125
           N IS
Sbjct: 188 NKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 20  RLERLSILGNMLTC----LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 75
           ++  + +    L      +  ++ SL  L  L +SN+ +           SL  L  + N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 76  -LIGELPA--SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 125
            L G +    S+ +   LK L +++N +      +      +L+ + L  N IS
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCL---PETIGSLRNLVLLNVSNNKL-KSLP 58
           L  + I            L  L +  N L+       ++GS   L  LNVS+N L     
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

Query: 59  ESIG-SCYSLEELQANDN-LIGELPASIC---NLIHLKSLCLNNNNI-GQIPANLLKDCK 112
            S G    SLE L  + N + G              LK L ++ N I G +    +  C 
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200

Query: 113 ALQNISLHNNPIS 125
            L+ + + +N  S
Sbjct: 201 NLEFLDVSSNNFS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 10/129 (7%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK---SLP 58
           L+ N    ++P  + +       + +          I +       + + N L+      
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKR---YVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 59  ESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQN 116
           E +    +            G    +  N   +  L ++ N + G IP   +     L  
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFI 660

Query: 117 ISLHNNPIS 125
           ++L +N IS
Sbjct: 661 LNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 9e-08
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 25/105 (23%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLKSLPES 60
           +  N ++  +P E+G +  L  L++  N ++  +P+ +G LR L +L++S+N        
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-------- 690

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI-GQIP 104
                          L G +P ++  L  L  + L+NNN+ G IP
Sbjct: 691 --------------KLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.6 bits (205), Expect = 1e-19
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 3   LDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPE 59
           +    ++ ++PD L Q+  L  L    N L+  LP +I SL NLV +    N++  ++P+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 60  SIGSCYSLEE---LQANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
           S GS   L     +  N  L G++P +  NL +L  + L+ N + G          K  Q
Sbjct: 168 SYGSFSKLFTSMTISRN-RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS-DKNTQ 224

Query: 116 NISLHNNPIS 125
            I L  N ++
Sbjct: 225 KIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.9 bits (198), Expect = 1e-18
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 2   TLDGNRIT---SLPDELGQLVRLERLSILG-NMLT-CLPETIGSLRNLVLLNVSNNKLK- 55
            L G  +     +P  L  L  L  L I G N L   +P  I  L  L  L +++  +  
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 56  SLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKA 113
           ++P+ +    +L  L  + N L G LP SI +L +L  +  + N I G IP +     K 
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 114 LQNISLHNNPIS 125
             ++++  N ++
Sbjct: 176 FTSMTISRNRLT 187

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 1   MTLDGNRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SL 57
           MT+  NR+T  +P     L  L  + +  NML        GS +N   ++++ N L   L
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 58  PESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
              +G   +L  L   +N + G LP  +  L  L SL ++ NN+ G+IP     + +   
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFD 294

Query: 116 NISLHNNP 123
             +  NN 
Sbjct: 295 VSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 34  LPETIGSLRNLVLLNVSNNKL---KSLPESIGSCYSLEELQAND--NLIGELPASICNLI 88
           L +T      +  L++S   L     +P S+ +   L  L      NL+G +P +I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 89  HLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPIS 125
            L  L + + N+ G IP  L +  K L  +    N +S
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALS 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 4e-19
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPE 59
           L  N+IT L D + G   R++ L +  N +  +   E   S   L  LN+  N +  +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 60  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
            +     L+ L  + N +  +     +   +  + L NN +  I    L+  + L++  L
Sbjct: 187 QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL 244

Query: 120 HNNPISMD 127
             N     
Sbjct: 245 RGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           L GN ++ +   +L    +LE L++  N+L    + + SL  L  L+++NN ++ L    
Sbjct: 41  LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGP 99

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               S+E L A +N I  +  S       K++ L NN I  +          +Q + L  
Sbjct: 100 ----SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 122 NPISM 126
           N I  
Sbjct: 154 NEIDT 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 3   LDGNRITSLPDELGQ-LVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
           +  + +      L Q    ++ L + GN L+ +    +     L LLN+S+N L    + 
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD- 75

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + S  +L  L  N+N + EL         +++L   NNNI ++  +     +  +NI L 
Sbjct: 76  LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG---QGKKNIYLA 128

Query: 121 NNPISM 126
           NN I+M
Sbjct: 129 NNKITM 134

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 1/120 (0%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L  N I  +  ++    +L+ L +  N L  +     S   +  +++ NNKL  + +++ 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +LE      N             + +   +    + ++     ++C           
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 10  SLPDELGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLP-ESIGSCYSL 67
           ++ +      R +   +  + L     ++     N+  L++S N L  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 68  EELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           E L  + N++ E    + +L  L++L LNNN + ++         +++ +   NN IS
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNIS 112

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.6 bits (198), Expect = 2e-18
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L    +T L   L QL+ +  L +  N L  LP  + +LR L +L  S+N L+++   + 
Sbjct: 448 LAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VA 505

Query: 63  SCYSLEELQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
           +   L+EL   +N + +  A   + +   L  L L  N++ Q      +  + L ++S 
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.7 bits (188), Expect = 4e-17
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 6   NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY 65
             +        +   +  L +    LT L   +  L  +  L++S+N+L++LP ++ +  
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 66  SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL-LKDCKALQNISLHNNPI 124
            LE LQA+DN +  +   + NL  L+ L L NN + Q  A   L  C  L  ++L  N +
Sbjct: 487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 125 S 125
            
Sbjct: 546 C 546

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 26/128 (20%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
           +  N +  +       L  LE+L++    LT +P E +  L  L++L + +  + ++ + 
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 61  I-GSCYSLEELQ-ANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
                Y L+ L+ ++   +  +  +    ++L SL + + N+  +P   ++    L+ ++
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254

Query: 119 LHNNPISM 126
           L  NPIS 
Sbjct: 255 LSYNPIST 262

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILG-NMLTCLPETIGSLRNLVLLNVSNNKLKSLPE- 59
           L    I ++ D    +L RL+ L I     L  +        NL  L++++  L ++P  
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 60  SIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           ++     L  L  + N I  +  S+   L+ L+ + L    +  +     +    L+ ++
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 119 LHNNPIS 125
           +  N ++
Sbjct: 303 VSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 4e-17
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES 60
           L  NRI +L  DE      LE L +  N+++ +      +L NL  L + +N+LK +P  
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +     +L +L  ++N I  L   +  +L +LKSL + +N++  I         +L+ ++
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158

Query: 119 LHNNPISM 126
           L    ++ 
Sbjct: 159 LEKCNLTS 166

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 7e-17
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVS-NNKLKSL 57
           +TL+   +TS+P E L  L  L  L +    +  + + +   L  L +L +S    L ++
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 58  PESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
             +     +L  L      +  +P     +L++L+ L L+ N I  I  ++L +   LQ 
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 117 ISLHNNPIS 125
           I L    ++
Sbjct: 277 IQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 6e-16
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 4   DGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI- 61
               + ++       + L  LSI    LT +P   +  L  L  LN+S N + ++  S+ 
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 62  GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
                L+E+Q     +  +       L +L+ L ++ N +  +  ++      L+ + L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 121 NNPIS 125
           +NP++
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI 61
               R  ++P+ +        L +  N +  L +    S  +L  L ++ N + ++    
Sbjct: 18  CHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 62  -GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
             + ++L  L    N +  +P  +   L +L  L ++ N I  +   + +D   L+++ +
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 120 HNNPIS 125
            +N + 
Sbjct: 136 GDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY-SLEELQANDNLIGELPASI-C 85
                 +PE I       LL++  N++K+L +   + +  LEEL+ N+N++  +      
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
           NL +L++L L +N +  IP  +      L  + +  N I +
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           +  N++ +LP  +  QLV L  L +  N L  LP  +  SL  L  L++  N+L+SLP+ 
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 61  I-GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +     SL+EL+  +N +  +P      L  LK+L L+NN + ++P       + L+ + 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 119 LHNNP 123
           L  NP
Sbjct: 212 LQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 3e-16
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L+ N++ +LP  +  +L  LE L +  N L  LP  +   L NL  L +  N+LKSLP  
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127

Query: 61  I-GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +  S   L  L    N +  LP  +   L  LK L L NN + ++P         L+ + 
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 119 LHNNPISM 126
           L NN +  
Sbjct: 188 LDNNQLKR 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 8e-16
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N+++SLP +   +L +L  L +  N L  LP  I   L+NL  L V++NKL++LP  
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103

Query: 61  IGSC-YSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +     +L EL+ + N +  LP  +  +L  L  L L  N +  +P  +     +L+ + 
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163

Query: 119 LHNNPIS 125
           L+NN + 
Sbjct: 164 LYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-G 62
             ++T++P         ++L +  N L+ LP      L  L LL +++NKL++LP  I  
Sbjct: 25  SKKLTAIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82

Query: 63  SCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
              +LE L   DN +  LP  +   L++L  L L+ N +  +P  +      L  +SL  
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 122 N 122
           N
Sbjct: 143 N 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 50  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLL 108
           S+ KL ++P +I +    ++L    N +  LP+     L  L+ L LN+N +  +PA + 
Sbjct: 24  SSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 109 KDCKALQNISLHNNPIS 125
           K+ K L+ + + +N + 
Sbjct: 82  KELKNLETLWVTDNKLQ 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4   DGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SI 61
           +  R++ + +     L  L  L++    L  +P  +  L  L  L++S N L ++   S 
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 62  GSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
                L++L    + I  +   +  NL  L  + L +NN+  +P +L      L+ I LH
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 121 NNPI 124
           +NP 
Sbjct: 288 HNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILG-NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L  N I S+P     ++  L RL +     L+ + E     L NL  LN++   L+ +P 
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201

Query: 60  SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           ++     L+EL  + N +  +   S   L+HL+ L +  + I  I  N   + ++L  I+
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 119 LHNNPISM 126
           L +N +++
Sbjct: 262 LAHNNLTL 269

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-13
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
                +  +PD +        L++  N +  +   +   LR+L +L +S N ++++    
Sbjct: 50  CVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 62  -GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
                +L  L+  DN +  +P      L  LK L L NN I  IP+       +L+ + L
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 120 -HNNPIS 125
                +S
Sbjct: 168 GELKRLS 174

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 50  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLL 108
               L+ +P+ I +  +   L  ++N I  +  +   +L HL+ L L+ N+I  I     
Sbjct: 51  VRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 109 KDCKALQNISLHNNPISM 126
                L  + L +N ++ 
Sbjct: 109 NGLANLNTLELFDNRLTT 126

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4   DGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SI 61
           +  ++  + +     L  L+ L++    +  +P  +  L  L  L +S N    +   S 
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 62  GSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
               SL++L   ++ +  +   +   L  L  L L +NN+  +P +L    + L  + LH
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 121 NNPI 124
           +NP 
Sbjct: 299 HNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 3e-17
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILG-NMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L  N I S+P     ++  L RL +     L  + E     L NL  LN+    +K +P 
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212

Query: 60  SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           ++     LEEL+ + N   E+   S   L  LK L + N+ +  I  N      +L  ++
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 119 LHNNPISM 126
           L +N +S 
Sbjct: 273 LAHNNLSS 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
           L  N I  +       L  L  L +  N LT +P      L  L  L + NN ++S+P  
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

Query: 61  I-GSCYSLEELQ-ANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
                 SL  L       +  +       L +LK L L   NI  +P   L     L+ +
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEEL 223

Query: 118 SLHNNPISMDQ 128
            +  N     +
Sbjct: 224 EMSGNHFPEIR 234

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
                ++ +P  +        L+++ N +  +   T   L +L +L +  N ++ +    
Sbjct: 61  CTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 62  -GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
                SL  L+  DN +  +P+     L  L+ L L NN I  IP+       +L  + L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 120 -HNNPIS 125
                + 
Sbjct: 179 GELKKLE 185

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY-SLEELQANDNLIGELPASI-C 85
              L+ +P+ I    N   LN+  N ++ +          LE LQ   N I ++      
Sbjct: 63  RRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
            L  L +L L +N +  IP+   +    L+ + L NNPI  
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI 61
           L  N +T     L     L  + +  N L  +       ++ L  L +SNN+L +L    
Sbjct: 233 LQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 291

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               +L+ L  + N +  +  +      L++L L++N+I  +  +       L+N++L +
Sbjct: 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSH 348

Query: 122 NPISMDQF 129
           N    +  
Sbjct: 349 NDWDCNSL 356

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
              + +  LP   L    ++E L++    +  +          +  L +  N ++ LP  
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +  +   L  L    N +  LP  I  N   L +L ++NNN+ +I  +  +   +LQN+ 
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 119 LHNNPIS 125
           L +N ++
Sbjct: 172 LSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 7e-14
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 3   LDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           +  N I  LP  + Q +  L  L +  N L+ LP  I  +   L  L++SNN L+ + + 
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

Query: 61  I-GSCYSLEELQANDNLIGELPA-----------------SICNLIHLKSLCLNNNNIGQ 102
              +  SL+ LQ + N +  +                   ++   I ++ L  ++N+I  
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219

Query: 103 IPANLLKDCKALQNISLHNNPIS 125
           +   +  +   L  + L +N ++
Sbjct: 220 VRGPVNVE---LTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 7   RITSLPDELGQLVRLERLSI--LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GS 63
               +   L        + I      +    E I +L N  ++   N+ ++ LP ++  S
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 64  CYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +E L  ND  I E+          ++ L +  N I  +P ++ ++   L  + L  N
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 123 PISM 126
            +S 
Sbjct: 128 DLSS 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.8 bits (192), Expect = 5e-18
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI 61
           L  N++ SLP     L  L  L +  N LT LP      L  L  L +  N+LK+LP  +
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 62  -GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
                 LE+L   +N + ELPA +   L +L +L L  N++  IP         L    L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFL 202

Query: 120 HNNP 123
           H NP
Sbjct: 203 HGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.8 bits (192), Expect = 6e-18
 Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI- 61
           LD   +T L    G L  L  L +  N L  LP    +L  L +L+VS N+L SLP    
Sbjct: 62  LDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 62  GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
                L+EL    N +  LP  +      L+ L L NNN+ ++PA LL   + L  + L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 121 NNPISM 126
            N +  
Sbjct: 181 ENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI 61
            D   +T+LP +L        L +  N+L             L  LN+   +L  L    
Sbjct: 17  CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
           G+   L  L  + N +  LP     L  L  L ++ N +  +P   L+    LQ + L  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 122 NPIS 125
           N + 
Sbjct: 134 NELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 43  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIG 101
           + + +N     L +LP  +        L  ++NL+     +       L  L L+   + 
Sbjct: 11  SHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 102 QIPANLLKDCKALQNISLHNNPIS 125
           ++          L  + L +N + 
Sbjct: 69  KLQV--DGTLPVLGTLDLSHNQLQ 90

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 7e-18
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           LD   +  L       L  L+ L +  N L  LP+     L NL  L +  N++ S+PE 
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
                +SL+ L  + N +  +      +L  L +L L  NN+  +P   L   +ALQ + 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 119 LHNNP 123
           L++NP
Sbjct: 232 LNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 3   LDGN-RITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L  N ++ S+       L RL  L +    L  L   +   L  L  L + +N L++LP+
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 60  SI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
                  +L  L  + N I  +P      L  L  L L+ N +  +  +  +D   L  +
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 118 SLHNNPISM 126
            L  N +S 
Sbjct: 207 YLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNN-KLKSLPE 59
           L GNRI+ +P         L  L +  N+L  +       L  L  L++S+N +L+S+  
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 60  SI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           +       L  L  +   + EL   +   L  L+ L L +N +  +P +  +D   L ++
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 118 SLHNNPIS 125
            LH N IS
Sbjct: 159 FLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-C 85
              L  +P  I        + +  N++  +P +   +C +L  L  + N++  + A+   
Sbjct: 20  QQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 86  NLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPIS 125
            L  L+ L L++N  +  +          L  + L    + 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP 58
           + L GNRI+S+P+     L  L+RL +  N +  +       L  L+ L +  N L +LP
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 59  ESI-GSCYSLEELQANDN 75
                   +L+ L+ NDN
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L+ N I  +P        +L R+ +  N ++ L       LR+L  L +  NK+  LP+S
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +    +SL+ L  N N I  L      +L +L  L L +N +  I        +A+Q + 
Sbjct: 99  LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158

Query: 119 LHNNP 123
           L  NP
Sbjct: 159 LAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 7/109 (6%)

Query: 22  ERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQA---NDNLI 77
             + +  N +  +P       + L  +++SNN++  L     +   L  L +     N I
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLRSLNSLVLYGNKI 92

Query: 78  GELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
            ELP S+   L  L+ L LN N I  +  +  +D   L  +SL++N + 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE- 59
           L  N++  L      +  +L  L +  N ++ L PE    L  L +LN+ +N+L  L + 
Sbjct: 32  LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91

Query: 60  SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +   C +L EL    N I ++         +L +L L++N +           + LQ + 
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 119 LHNNPIS 125
           L NN I 
Sbjct: 152 LSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PE 59
           L  N ++ L D+       L  L ++ N +  +        +NL+ L++S+N L S    
Sbjct: 80  LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 60  SIGSCYSLEELQANDNLIGELPA---SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
           +     +L+EL  ++N I  L +    I     LK L L++N I +           L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 117 ISLHNNPIS 125
           + L+N  + 
Sbjct: 200 LFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PES 60
               ++T +PD+L     +  L++  N L  L          L  L+V  N +  L PE 
Sbjct: 11  CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 61  IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
                 L+ L    N + +L   +     +L  L L +N+I +I  N     K L  + L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 120 HNNPIS 125
            +N +S
Sbjct: 129 SHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSL-P 58
           L  N+I+ +  +    L  LE L +  N +      +    L N+  + +S NK   L  
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 59  ESIGSCYSLEELQANDNLI---GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115
            S     SL+ L      +      P+    L +L  L L+NNNI  I  ++L+  + L+
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 116 NISLHNNPIS 125
            + L +N ++
Sbjct: 508 ILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 3   LDGNRITSL---PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL- 57
           L    + ++   P     L  L  L +  N +  +  + +  L  L +L++ +N L  L 
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 58  --------PESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLL 108
                      +     L  L    N   E+P  +  +L  LK + L  NN+  +PA++ 
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580

Query: 109 KDCKALQNISLHNNPISM 126
            +  +L++++L  N I+ 
Sbjct: 581 NNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 15/138 (10%)

Query: 3   LDGNRITSLPDELGQLVRLERLSIL---GNMLTCL-PETIGSLRNLVLLNVSNNKLKSL- 57
           L  +++++  +     ++   L++L    N L  +  ++   L  L    +  N ++ L 
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 58  PESIGSCYSLEELQANDNLI----------GELPASICNLIHLKSLCLNNNNIGQIPANL 107
             S+   +++  L    +                 S   L  L+ L + +N+I  I +N+
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 108 LKDCKALQNISLHNNPIS 125
                 L+ +SL N+  S
Sbjct: 349 FTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL---------PETIGSLRNLVLLNVSNN 52
           L  N I ++ D+ L  L +LE L +  N L  L            +  L +L +LN+ +N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 53  KLKSL-PESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKD 110
               +  E     + L+ +    N +  LPAS+  N + LKSL L  N I  +   +   
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 111 C-KALQNISLHNNPISMD 127
             + L  + +  NP    
Sbjct: 607 AFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVL-----LNVSNNKL 54
           + ++ N I  +       L+ L+ LS+  +  +    T  +  +L       LN++ NK+
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 55  KSL-PESIGSCYSLEELQANDNLIGEL--PASICNLIHLKSLCLNNNNIGQIPANLLKDC 111
             +  ++      LE L    N IG+         L ++  + L+ N   Q+  N     
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 112 KALQNISLHNNPIS 125
            +LQ + L    + 
Sbjct: 454 PSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 19  VRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77
           V  E        LT +P+ +    N+ +LN+++N+L+ L   +      L  L    N I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 78  GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
            +L P     L  LK L L +N + Q+       C  L  + L +N I 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTC-LPETIG---SLRNLVLLNVSNNKLKSL 57
           L  N+I    P     + RL  L +    L   L E +    +  ++  L++SN++L + 
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 58  PESIGS---CYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 113
             +        +L  L  + N +  +   S   L  L+   L  NNI  + ++ L     
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297

Query: 114 LQNISLHNNPISMD 127
           ++ ++L  +     
Sbjct: 298 VRYLNLKRSFTKQS 311

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES 60
           +    +  + D     L  LE L++  N +  +       L NL  L++SN+       +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 61  IGSCY-----SLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQ-IPANLLKDCKA 113
             +        L  L    N I ++ + +   L HL+ L L  N IGQ +     +  + 
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 114 LQNISLHNNPISM 126
           +  I L  N    
Sbjct: 432 IFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 17/140 (12%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL----------PETIGSLRNLVLLNVSN 51
           L+ N I  L    L  L  +  L++  +                 +   L+ L  LN+ +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 52  NKLKSLPE-SIGSCYSLEELQANDNLIGELPASICNLIH-----LKSLCLNNNNIGQIPA 105
           N +  +         +L+ L  +++       +    +      L  L L  N I +I +
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 106 NLLKDCKALQNISLHNNPIS 125
           +       L+ + L  N I 
Sbjct: 399 DAFSWLGHLEVLDLGLNEIG 418

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPES 60
           L  N + ++      L +LE L    + L  + E     SLRNL+ L++S+   +     
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

Query: 61  I-GSCYSLEEL--QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           I     SLE L    N      LP     L +L  L L+   + Q+         +LQ +
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 118 SLHNNPIS 125
           ++ +N   
Sbjct: 205 NMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 5e-17
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGS---LRNLVLLNVSNNKLKSLP 58
           L+ N++ SLP     +L +L +LS+  N L+       S     +L  L++S N + ++ 
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94

Query: 59  ESIGSCYSLEELQANDNLIGELPAS--ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
            +      LE L    + + ++       +L +L  L +++ +       +     +L+ 
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 117 ISLHNNPI 124
           + +  N  
Sbjct: 155 LKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 6/130 (4%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKS--L 57
              + +  + +      L  L  L I           I   L +L +L ++ N  +   L
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 58  PESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
           P+      +L  L  +   + +L  +   +L  L+ L +++NN   +     K   +LQ 
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 117 ISLHNNPISM 126
           +    N I  
Sbjct: 228 LDYSLNHIMT 237

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGN-MLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           +         +     L  LE L + GN         I   LRNL  L++S  +L+ L  
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 60  SIGSC-YSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKD-CKALQN 116
           +  +   SL+ L  + N    L       L  L+ L  + N+I       L+    +L  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 117 ISLHNNPIS 125
           ++L  N  +
Sbjct: 253 LNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-- 84
              LT +P  I    +   L + +NKL+SLP  +      L +L  + N +         
Sbjct: 16  SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 85  -CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
                 LK L L+ N +  + +N L   + L+++   ++ +  
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQ 115

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              N+IT +   +  + RL  L I  N +T L   + +L  L  L +  N++  +  ++ 
Sbjct: 206 AYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVK 262

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L+ L    N I ++   + NL  L SL LNNN +G     ++     L  + L  N
Sbjct: 263 DLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 123 PIS 125
            I+
Sbjct: 322 HIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+ + I+ +   L  L ++  L++  N        + ++  L  L V+ +K+K +   I 
Sbjct: 117 LNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IA 174

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   L  L  N N I ++   + +L  L       N I  I    + +   L ++ + NN
Sbjct: 175 NLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231

Query: 123 PIS 125
            I+
Sbjct: 232 KIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N+IT L   L  L +L  L I  N ++ +   +  L  L +LNV +N++  +   + 
Sbjct: 228 IGNNKITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLN 284

Query: 63  SCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
           +   L  L  N+N +G      I  L +L +L L+ N+I  I    L     + +    N
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 122 NPIS 125
             I 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
                 I  +      L    R  +    +T +  T   L ++  L V+  K+ S+   I
Sbjct: 6   ATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-I 62

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               +LE L  N N I ++   + NL+ L +L +  N I  I A  L++   L+ + L+ 
Sbjct: 63  EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNE 119

Query: 122 NPIS 125
           + IS
Sbjct: 120 DNIS 123

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L    +T +     +L  + +L + G  +  +   I  L NL  LN++ N++  +   + 
Sbjct: 29  LQKASVTDVVT-QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LS 85

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   L  L    N I ++ A + NL +L+ L LN +NI  I    L +   + +++L  N
Sbjct: 86  NLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142

Query: 123 PI 124
             
Sbjct: 143 HN 144

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 5e-17
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLP-E 59
              N + ++      +L+ L  L +    +  +  +T  S   L  L ++ N L  +   
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 60  SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           ++    +L+ L      I  +    + N   L+SL L +N+I  I        + L+ + 
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 119 LHNNPIS 125
             NN I 
Sbjct: 160 FQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL--PE 59
           L    ++ LP  L  L  L++L +  N    L + +  +  +L  L++  N  +      
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 60  SIGSCYSLEELQANDNLIGELPA---SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
            + +  +L EL  + + I         + NL HL+SL L+ N    +     K+C  L+ 
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 117 ISLHNNPIS 125
           + L    + 
Sbjct: 405 LDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PES 60
            +   +  +P  L      E L    N+L  +   T   L NL  L+++  ++  +  ++
Sbjct: 19  CENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 61  IGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
             S + L+ L    N +  +  +       LK L      I  I    L + K L+++ L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 120 HNNPIS 125
            +N IS
Sbjct: 137 GSNHIS 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLT----CLPETIGSLRNLVLLNVSNNKLKSL 57
           L  + +    ++    L  L+ L++ GN           ++ +L  L +L +S   L S+
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 58  P-ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
              +  S   +  +  + N +        + +    L L +N+I  I  +LL      + 
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551

Query: 117 ISLHNNPIS 125
           I+L  NP+ 
Sbjct: 552 INLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 18/132 (13%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 3   LDGNRITSLPDE---LGQLVRLERLSILGNMLTCLPETI---GSLRNLVLLNVSNNKLKS 56
             G +   +  +      +  L   +        +   +       ++  +N+  +   +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 57  L-PESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115
           +   +      L+EL      + ELP+ +  L  LK L L+ N    +      +  +L 
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 116 NISLHNNPISMD 127
           ++S+  N   ++
Sbjct: 329 HLSIKGNTKRLE 340

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE- 59
           L   +I  + ++      RL+ L +  N L  +    +   + L  L      + S+   
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 60  SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
            + +  +LE L    N I  +          LK L   NN I  +    +   +   N+S
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 119 LH--NNPIS 125
           L+   N I+
Sbjct: 184 LNLNGNDIA 192

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 7e-13
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 2   TLDGNRITSLPDEL---GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL 57
           T +      +   +      + +E +++  +    +   T      L  L+++   L  L
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 58  PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
           P  +    +L++L  + N    L   S  N   L  L +  N    ++    L++ + L+
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 116 NISLHNNPISM 126
            + L ++ I  
Sbjct: 354 ELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSL--PDELGQLVRLERLSILGNMLT---CLPETIGSLRNLVLLNVSNNKLKSL 57
           + GN          L  L  L  L +  + +    C    + +L +L  LN+S N+  SL
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 58  -PESIGSCYSLEELQANDNLIGEL--PASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 114
             E+   C  LE L      +      +   NL  LK L L+++ +      L     AL
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 115 QNISLHNNPIS 125
           Q+++L  N   
Sbjct: 452 QHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 3   LDGNRITSLPDE----LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP 58
              N I  L  E    L Q      L++ GN +  +            LN    +   + 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQA-TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 59  E---SIGSCYSLEELQANDNLIGELPASI---CNLIHLKSLCLNNNNIGQIPANLLKDCK 112
                  +  SL      D    ++  ++      + ++S+ L  +    I +N      
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 113 ALQNISLHNNPIS 125
            LQ + L    +S
Sbjct: 279 GLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 47  LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPA 105
            N  N  L  +P ++ +  S E L+ + N++  +   +   LI+L  L L    I  I  
Sbjct: 17  YNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 106 NLLKDCKALQNISLHNNPIS 125
           +  +    L  + L  NP+ 
Sbjct: 75  DTFQSQHRLDTLVLTANPLI 94

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 8e-17
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSLPE 59
                + SL +   G L  L+ L++  N++          +L NL  L++S+NK++S+  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 60  SIGSCYSLEELQA-------NDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCK 112
                  L ++         + N +  +       I LK L L+ N +  +P  +     
Sbjct: 167 --TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 113 ALQNISLHNNP 123
           +LQ I LH NP
Sbjct: 225 SLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 5e-14
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N +  L          L+ L +    +  + +    SL +L  L ++ N ++SL   
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNI 117
                 SL++L A +  +  L      +L  LK L + +N I          +   L+++
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 118 SLHNNPISM 126
            L +N I  
Sbjct: 155 DLSSNKIQS 163

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES 60
           L GN I SL       L  L++L  +   L  L    IG L+ L  LNV++N ++S    
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 61  --IGSCYSLEELQANDNLIGELPASI-CNLIHLK----SLCLNNNNIGQIPANLLKDCKA 113
               +  +LE L  + N I  +  +    L  +     SL L+ N +  I     K+ + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 114 LQNISLHNNPISM 126
           L+ ++L  N +  
Sbjct: 202 LKELALDTNQLKS 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%)

Query: 4   DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI- 61
                  +PD L      + L +  N L  L      S   L +L++S  +++++ +   
Sbjct: 15  MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 62  GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
            S   L  L    N I  L       L  L+ L     N+  +    +   K L+ +++ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 121 NNPIS 125
           +N I 
Sbjct: 133 HNLIQ 137

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N++  LP EL     L+ + +  N L  LP+   SL  +      NN+L+ LPE + 
Sbjct: 138 VSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI---AAGNNQLEELPE-LQ 192

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   L  + A++N + +LP    +   L+S+   NN + ++P   L++   L  I   NN
Sbjct: 193 NLPFLTAIYADNNSLKKLPDLPLS---LESIVAGNNILEELPE--LQNLPFLTTIYADNN 247

Query: 123 PIS 125
            + 
Sbjct: 248 LLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+   ++SLP+    L   E L    N LT LPE   SL++L++ N +   L  LP    
Sbjct: 78  LNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP--- 131

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               LE L  ++N + +LP  + N   LK + ++NN++ ++P        +L+ I+  NN
Sbjct: 132 ---LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNN 183

Query: 123 PIS 125
            + 
Sbjct: 184 QLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 25/139 (17%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N++  LP    +L   ERL    N L  +PE   +L+    L+V  N L+  P+   
Sbjct: 324 VSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPE 377

Query: 63  S----------------CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN 106
           S                  +L++L    N + E P    ++  L+   +N+  +      
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR---MNSERVVDPYEF 434

Query: 107 LLKDCKALQNISLHNNPIS 125
             +    L++    ++   
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           +    N++  LP EL  L  L  +    N L  LP+   SL ++V     NN L+ LPE 
Sbjct: 178 IAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA---GNNILEELPE- 232

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + +   L  + A++NL+  LP    +   L++L + +N +  +P       ++L  + + 
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPELP----QSLTFLDVS 285

Query: 121 NNPIS 125
            N  S
Sbjct: 286 ENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 32/152 (21%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVL-------------LN 48
              + +T +P E   +          +      P   G  R + +             L 
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 49  VSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANL- 107
           ++N  L SLPE       LE L A+ N + ELP    +L  L     N   +  +P  L 
Sbjct: 78  LNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 108 --------------LKDCKALQNISLHNNPIS 125
                         L++   L+ I + NN + 
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + +  N +T LP+       L  L +  N+ + L E   +L     LN S+N+++SL + 
Sbjct: 262 LNVRDNYLTDLPELPQS---LTFLDVSENIFSGLSELPPNLYY---LNASSNEIRSLCDL 315

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
                SLEEL  ++N + ELPA       L+ L  + N++ ++P       + L+ + + 
Sbjct: 316 PP---SLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELP----QNLKQLHVE 365

Query: 121 NNPIS 125
            NP+ 
Sbjct: 366 YNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              N +  LP EL  L  L  +    N+L  LP+   SL     LNV +N L  LPE   
Sbjct: 222 AGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEA---LNVRDNYLTDLPELPQ 277

Query: 63  SCYSLEELQANDNLIGELPASICNLI--------------HLKSLCLNNNNIGQIPANLL 108
           S   L+  +   + + ELP ++  L                L+ L ++NN + ++PA   
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP 337

Query: 109 KDCKALQNISLHNNPIS 125
           +    L+ +    N ++
Sbjct: 338 R----LERLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 17  QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL-KSLPESIGS------------ 63
               L+      + LT +P    ++++      + ++  ++ P   G             
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 64  -CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
                 EL+ N+  +  LP    +   L+SL  + N++ ++P  L +  K+L   + +  
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELP-ELPQSLKSLLVDNNNLK 124

Query: 123 PIS 125
            +S
Sbjct: 125 ALS 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 18/106 (16%)

Query: 34  LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLI---- 88
           +     S   L      ++ L  +P    +  S  E     +      P           
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 89  ---------HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
                        L LNN  +  +P         L+++    N ++
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLT 104

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
              + +  LP   L    ++E L++    +  +          +  L +  N ++ LP  
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +  +   L  L    N +  LP  I  N   L +L ++NNN+ +I  +  +   +LQN+ 
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 119 LHNNPISMDQFQQMEGFEE 137
           L +N ++      +     
Sbjct: 178 LSSNRLTHVDLSLIPSLFH 196

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 8e-15
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
               N I  +   +   V L  L +  N LT     + +   LV +++S N+L+ +    
Sbjct: 217 DASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHP 273

Query: 62  -GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
                 LE L  ++N +  L      +  LK L L++N++  +  N  +    L+N+ L 
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLD 332

Query: 121 NNPIS 125
           +N I 
Sbjct: 333 HNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           L  N +  +      ++ RLERL I  N L  L      +  L +L++S+N L  +  + 
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
                LE L  + N I  L  S      LK+L L++N+      +L    + +   ++ +
Sbjct: 321 PQFDRLENLYLDHNSIVTLKLS--THHTLKNLTLSHNDW--DCNSLRALFRNVARPAVDD 376

Query: 122 NPISMDQFQQMEG 134
                    Q+E 
Sbjct: 377 ADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 6e-14
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 9/123 (7%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L  NR+T +   L  +  L   ++  N+L+ L         +  L+ S+N +  +     
Sbjct: 178 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSINVVRG--P 229

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L  L+   N + +    + N   L  + L+ N + +I  +     + L+ + + NN
Sbjct: 230 VNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 123 PIS 125
            + 
Sbjct: 289 RLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 7   RITSLPDELGQLVRLERLSI--LGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GS 63
               +   L        + I      +    E I +L N  ++   N+ ++ LP ++  S
Sbjct: 15  EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDS 73

Query: 64  CYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +E L  ND  I E+          ++ L +  N I  +P ++ ++   L  + L  N
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 123 PIS 125
            +S
Sbjct: 134 DLS 136

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL---PETIGSLRNLVLLNVSNNKLKSLP 58
           +  N IT +       L ++  + +  N L            ++ L  + +++  + ++P
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187

Query: 59  ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           +  G   SL EL  + N I ++ A S+  L +L  L L+ N+I  +    L +   L+ +
Sbjct: 188 Q--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245

Query: 118 SLHNNPISM 126
            L+NN +  
Sbjct: 246 HLNNNKLVK 254

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE 59
           + +    IT++P  L     L  L + GN +T +   ++  L NL  L +S N + ++  
Sbjct: 176 IRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 60  -SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN------LLKDCK 112
            S+ +   L EL  N+N + ++P  + +  +++ + L+NNNI  I +N            
Sbjct: 234 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 113 ALQNISLHNNPISM 126
           +   +SL +NP+  
Sbjct: 294 SYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES 60
           LDGN+IT +    L  L  L +L +  N ++ +   ++ +  +L  L+++NNKL  +P  
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 61  IGSCYSLEELQANDNLIGELPAS-------ICNLIHLKSLCLNNNNI--GQIPANLLKDC 111
           +     ++ +  ++N I  + ++                + L +N +   +I  +  +  
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 112 KALQNISLHNN 122
                + L N 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
                +  +P +L        L +  N +T + +    +L+NL  L + NNK+  +    
Sbjct: 38  CSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95

Query: 62  GS-CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
            +    LE L  + N + ELP  +     L+ L ++ N I ++  ++      +  + L 
Sbjct: 96  FAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153

Query: 121 NNPIS 125
            NP+ 
Sbjct: 154 TNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPASI-C 85
              L  +P+ +    +  LL++ NNK+  + +    +  +L  L   +N I ++      
Sbjct: 40  DLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
            L+ L+ L L+ N + ++P  + K    LQ + +H N I+ 
Sbjct: 98  PLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITK 135

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 43  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG 101
           +L ++  S+  L+ +P+ +        L   +N I E+      NL +L +L L NN I 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 102 QIPANLLKDCKALQNISLHNNPIS 125
           +I          L+ + L  N + 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK 113

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           LD N++ +L   +   L  L  L +  N L  LP  +   L  L  L +  N+LKSLP  
Sbjct: 66  LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125

Query: 61  I-GSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +      L+EL+ N N +  +PA   + L +L++L L+ N +  +P         LQ I+
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 119 LHNNP 123
           L  N 
Sbjct: 186 LFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 22  ERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE 79
           E+L +    L  L +     L  L  LN+  N+L++L   +      L  L   +N +  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 80  LPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           LP  +  +L  L  L L  N +  +P+ +      L+ + L+ N
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLP--DELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L+ N  T L       +L +L +++   N +T + E        +  + +++N+L+++  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 60  SI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
            +     SL+ L    N I  +       L  ++ L L +N I  +         +L  +
Sbjct: 99  KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158

Query: 118 SLHNNP 123
           +L  NP
Sbjct: 159 NLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 50  SNNKLKSLPESIGSCYSLEELQANDNLIGELPASIC--NLIHLKSLCLNNNNIGQIPANL 107
           SN KL  +PE I       EL+ N+N    L A+     L  L+ +  +NN I  I    
Sbjct: 19  SNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 108 LKDCKALQNISLHNNPIS 125
            +    +  I L +N + 
Sbjct: 77  FEGASGVNEILLTSNRLE 94

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 22  ERLSILGNMLTCLPETIG--SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 79
             L +  N  T L  T     L  L  +N SNNK+  + E                    
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE---------------- 78

Query: 80  LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
                     +  + L +N +  +   + K  ++L+ + L +N I+
Sbjct: 79  ------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 3   LDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPE 59
           L  N+IT L D + G   R++ L +  N +  +   E   S   L  LN+  N +  +  
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 60  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
            +     L+ L  + N +  +     +   +  + L NN +  I    L+  + L++  L
Sbjct: 187 QV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDL 244

Query: 120 HNNPISMD 127
             N     
Sbjct: 245 RGNGFHCG 252

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 4e-15
 Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 1/123 (0%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L  N I  +  ++    +L+ L +  N L  +     S   +  +++ NNKL  + +++ 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +LE      N             + +   +    + ++     ++C           
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 123 PIS 125
              
Sbjct: 295 CCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 8e-15
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 8/124 (6%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           L GN ++ +   +L    +LE L++  N+L    + + SL  L  L+++NN ++ L    
Sbjct: 41  LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGP 99

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               S+E L A +N I  +  S       K++ L NN I  +          +Q + L  
Sbjct: 100 ----SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 122 NPIS 125
           N I 
Sbjct: 154 NEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 3   LDGNRITSLPDELGQ-LVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES 60
           +  + +      L Q    ++ L + GN L+ +    +     L LLN+S+N L    + 
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD- 75

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + S  +L  L  N+N + EL         +++L   NNNI ++  +  +     +NI L 
Sbjct: 76  LESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRGQG---KKNIYLA 128

Query: 121 NNPIS 125
           NN I+
Sbjct: 129 NNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 10  SLPDELGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSL-PESIGSCYSL 67
           ++ +      R +   +  + L     ++     N+  L++S N L  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 68  EELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           E L  + N++ E    + +L  L++L LNNN + ++         +++ +   NN IS
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 18/153 (11%), Positives = 36/153 (23%), Gaps = 30/153 (19%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP-ESI 61
           L  N++  +   L     LE   + GN   C        +N  +  V+   +K L  ++ 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 62  GSCYSLEELQANDNLIGELPAS-----------------------------ICNLIHLKS 92
             C              +LPA                                N    + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 93  LCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           +         +   +    +A   +      + 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 12/130 (9%), Positives = 30/130 (23%), Gaps = 8/130 (6%)

Query: 2   TLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGS------LRNLVLLNVSNNKL 54
           T+    +  L  +  +                 LP            +   LL+   ++ 
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 55  KSLPESIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKA 113
           + L     +     E+ A       +   +        +L      + +  +N  +    
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 114 LQNISLHNNP 123
           L         
Sbjct: 386 LDGTLQQAVG 395

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS--L 57
              + +  + +      L  L  L I               L +L +L ++ N  +   L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 58  PESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
           P+      +L  L  +   + +L  +   +L  L+ L + +N +  +P  +     +LQ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 117 ISLHNNPIS 125
           I LH NP  
Sbjct: 523 IWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPES 60
           L  N + ++      L +LE L    + L  + E     SLRNL+ L++S+   +     
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 61  I-GSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           I     SLE L+   N   E  LP     L +L  L L+   + Q+         +LQ +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 118 SLHNNPISM 126
           ++ +N +  
Sbjct: 500 NMASNQLKS 508

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 3   LDGNRITSL---PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 59
           L  N ++              L+ L +  N +  +      L  L  L+  ++ LK + E
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 60  SI--GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNI-GQIPANLLKDCKALQ 115
                S  +L  L  +          I   L  L+ L +  N+       ++  + + L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 116 NISLHNNPIS 125
            + L    + 
Sbjct: 474 FLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLP-ES 60
                   +PD L      + L +  N L  L      S   L +L++S  +++++   +
Sbjct: 14  CMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 61  IGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
             S   L  L    N I  L       L  L+ L     N+  +    +   K L+ +++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 120 HNNPIS 125
            +N I 
Sbjct: 132 AHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSLPE 59
                + SL +  +G L  L+ L++  N++     PE   +L NL  L++S+NK++S+  
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 60  SI-----GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKA 113
           +              L  + N +  +       I L  L L NN     +    ++    
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 114 LQNISLHNNPIS 125
           L+   L      
Sbjct: 227 LEVHRLVLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL---P 58
            L   +    P    +L  L+RL+   N        +  L +L  L++S N L       
Sbjct: 310 ELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 59  ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNI 117
           +S     SL+ L  + N +  + ++   L  L+ L   ++N+ Q+   ++    + L  +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 118 SLHNNPIS 125
            + +    
Sbjct: 427 DISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTC--LPETIGSLRNLVLLN------VSNNKL 54
           L  N +  +     + +RL +L++  N  +   +   I  L  L +         +   L
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 55  KSLPESI-GSCYSLE----ELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLK 109
           +   +S      +L      L   D  + ++      L ++ S  L +  I ++      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FS 301

Query: 110 DCKALQNISLHNNPISMDQFQQMEGFEE 137
                Q++ L N         +++  + 
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKR 329

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N    +PD      ++  L++    +  +       + L +L+VSNN L S    + 
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLP 451

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L+EL  + N +  LP +      L  + ++ N +  +P  +     +LQ I LH N
Sbjct: 452 R---LQELYISRNKLKTLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 123 PI 124
           P 
Sbjct: 508 PW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 5e-15
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
           L  +RI ++  +    L  LE L +  N L+ L     G L +L  LN+  N  ++L  +
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 61  --IGSCYSLEELQ-ANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
               +  +L+ L+  N     E+       L  L  L +   ++    +  LK  + + +
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176

Query: 117 ISLHNNPIS 125
           ++LH +  +
Sbjct: 177 LTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 11/132 (8%)

Query: 2   TLDGNRITSLPDELGQ-LVRLERLSILGNMLT----CLPETIGSLRNLVLLNVSNNKLKS 56
           T++ +++  +P    Q L  LE L +  N++           G+  +L  L +S N L+S
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 57  LPESIGSCYSLEELQA---NDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA 113
           + ++     +L+ L +   + N    +P S      ++ L L++  I  +   + +    
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT--- 432

Query: 114 LQNISLHNNPIS 125
           L+ + + NN + 
Sbjct: 433 LEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVS-NNKLKSLP 58
           L  N ++SL     G L  L+ L+++GN    L  T    +L NL  L +        + 
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 59  E-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
                   SL EL+     +    + S+ ++  +  L L+ +    +         +++ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 117 ISLHNNPISM 126
           + L +  ++ 
Sbjct: 201 LELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNKLKSLPESI 61
                 TS+P  L     ++ L +  N +T +    + +  NL +L + ++++ ++    
Sbjct: 12  GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 62  -GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPAN-LLKDCKALQNIS 118
             S  SLE L  +DN +  L +S    L  LK L L  N    +    L  +   LQ + 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 119 LHNNPI 124
           + N   
Sbjct: 130 IGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 29  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGS---------CYSLEELQANDNLIGE 79
           N L  L   I  L  +   + + N L     S              ++  L      +  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 80  LPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 135
             +++   L  +K + + N+ +  +P +  +  K+L+ + L  N +  +  +     
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 47  LNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPA 105
            +  +    S+P  + +  +++ L  + N I  +    +    +L+ L L ++ I  I  
Sbjct: 10  CDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 106 NLLKDCKALQNISLHNNPIS 125
           +      +L+++ L +N +S
Sbjct: 68  DAFYSLGSLEHLDLSDNHLS 87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 17/172 (9%), Positives = 49/172 (28%), Gaps = 46/172 (26%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLP 58
           + +    + +   + L  +  +  L++  +    L E     L ++  L + +  L    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 59  ESI----------------------GSCYSLEELQANDNLIGELPASICNL--------- 87
            S                        S   L +L      + E+    C L         
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 88  -------------IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
                        + ++ L +    +    + +    + ++ I++ N+ + +
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
           +  N +  +P  L     L  L I  N +  +P+     LRN+  + +  N L++     
Sbjct: 109 ISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 62  G--SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
           G      L  L+ ++  +  +P  +     L  L L++N I  I    L     L  + L
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224

Query: 120 HNNPISM 126
            +N I M
Sbjct: 225 GHNQIRM 231

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
           +   ++T +P +L     L  L +  N +  +    +     L  L + +N+++ +    
Sbjct: 179 ISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 62  -GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA------L 114
                +L EL  ++N +  +PA + +L  L+ + L+ NNI ++  N              
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 115 QNISLHNNPISMDQFQ 130
             ISL NNP+   + Q
Sbjct: 297 NGISLFNNPVPYWEVQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVL--LNVSNNKLKSLPE 59
           +  NRI  +P      L  +  + + GN L       G+   L L  L +S  KL  +P+
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK 189

Query: 60  SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
            +    +L EL  + N I  +    +     L  L L +N I  I    L     L+ + 
Sbjct: 190 DLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 119 LHNNPIS 125
           L NN +S
Sbjct: 248 LDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 3   LDGNRITSLPDELG--QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE- 59
           + GN + +   E G    ++L  L I    LT +P+       L  L++ +NK++++   
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELE 211

Query: 60  SIGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
            +     L  L    N I  +       L  L+ L L+NN + ++PA L  D K LQ + 
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL-PDLKLLQVVY 270

Query: 119 LHNNPIS 125
           LH N I+
Sbjct: 271 LHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPES 60
           L  N I+ L  D+   L  L  L ++ N ++ + E     LR L  L +S N L  +P +
Sbjct: 61  LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120

Query: 61  IGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNI 117
           + S  SL EL+ +DN I ++P  +   L ++  + +  N +             K L  +
Sbjct: 121 LPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYL 177

Query: 118 SLHNNPIS 125
            +    ++
Sbjct: 178 RISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           L  N+I+ + ++    L +L++L I  N L  +P       +LV L + +N+++ +P+ +
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGV 142

Query: 62  -GSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
                ++  ++   N +          + + L  L ++   +  IP +L    + L  + 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELH 199

Query: 119 LHNNPIS 125
           L +N I 
Sbjct: 200 LDHNKIQ 206

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SIC 85
              L  +P+ I    +  LL++ NN +  L +        L  L   +N I ++   +  
Sbjct: 42  DLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
            L  L+ L ++ N++ +IP NL      L  + +H+N I  
Sbjct: 100 PLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRK 137

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 19/123 (15%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           L  N+I  + +  L  L  L  L +  N L+ +P  +  L+ L ++ +  N +  +  + 
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI--GQIPANLLKDCKALQNISL 119
                                      +   + L NN +   ++     +       I  
Sbjct: 284 FCPVGFGV----------------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 120 HNN 122
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 43  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIG 101
           +L ++  S+  LK++P+ I        L   +N I EL       L HL +L L NN I 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 102 QIPANLLKDCKALQNISLHNNPIS 125
           +I        + LQ + +  N + 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV 115

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 9/131 (6%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
           L  N +  +  E    +  L  L +  N L  L       L+ L +L + NN +  +  +
Sbjct: 71  LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

Query: 61  I-GSCYSLEELQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQIPANLLKDCKAL- 114
                  L++L  + N I   P         L  L  L L++N + ++P   L+   A  
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 115 -QNISLHNNPI 124
              + LHNNP+
Sbjct: 191 KNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE 59
           L  N ++ L  E    +L  L  L +  N L  +       + NL  L++S+N L +L E
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105

Query: 60  SI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDC---KAL 114
            +     +LE L   +N I  +  +   ++  L+ L L+ N I + P  L+KD      L
Sbjct: 106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 115 QNISLHNNPIS 125
             + L +N + 
Sbjct: 166 MLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 8e-13
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNNKLKSLPESI- 61
             ++ ++P  L        L +  N L+ L        L NL  L +S+N L  +     
Sbjct: 27  KQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84

Query: 62  GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
               +L  L  + N +  L   +  +L  L+ L L NN+I  +  N  +D   LQ + L 
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 121 NNPIS 125
            N IS
Sbjct: 145 QNQIS 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPE 59
           +         D     L  L  L + GN      L     +  NL  L++S  +L+ +  
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 60  SI-GSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
            +  + + L+ L  + N +  L +S    L  L +L  + N I      L    K+L   
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 118 SLHNNPISMD 127
           +L NN ++  
Sbjct: 551 NLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PES 60
               +++ +PD++      + + +  N L  L   +  +   L  L++S  +++++  ++
Sbjct: 18  CMDQKLSKVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 61  IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
               + L  L    N I      S   L  L++L      +  + +  +     L+ +++
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 120 HNNPIS 125
            +N I 
Sbjct: 136 AHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGS---LRNLVLLNVSNNKLKSLPE 59
           L  N+ +    ++  L  L  L +  N L+       S     +L  L++S N    +  
Sbjct: 335 LTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393

Query: 60  SIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           +      L+ L    + +  +    +  +L  L  L ++  N       +     +L  +
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 118 SLHNNPIS 125
            +  N   
Sbjct: 454 KMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKS--LP 58
           L GN I S        L  LE L  +   L  L    IG L  L  LNV++N + S  LP
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 59  ESIGSCYSLEELQANDNLIGELPASIC-----NLIHLKSLCLNNNNIGQIPANLLKDCKA 113
               +  +L  +  + N I  +  +       N     SL ++ N I  I     +  K 
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK- 205

Query: 114 LQNISLHNNPIS 125
           L  ++L  N  S
Sbjct: 206 LHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE--- 59
           +   ++   P     L  L+ L++  N  + +     +L +L  L++S N L        
Sbjct: 314 IIRCQLKQFPT--LDLPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 60  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNIS 118
           S     SL  L  + N    + A+   L  L+ L   ++ + ++   +     + L  + 
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 119 LHNNPISM 126
           +      +
Sbjct: 431 ISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 9/127 (7%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL---PETIGSLRNLVLLNVSNNKLKSLP 58
            D   +    P  +  L  +                      L N+  ++++   +K L 
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 59  ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +     +  + L      + + P    +L  LKSL L  N        +     +L  + 
Sbjct: 302 DVPK-HFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV--ALPSLSYLD 356

Query: 119 LHNNPIS 125
           L  N +S
Sbjct: 357 LSRNALS 363

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 15/135 (11%)

Query: 3   LDGNRITS--LPDELGQLVRLERLSILGNMLTCLPETI-----GSLRNLVLLNVSNNKLK 55
           +  N I S  LP     L  L  + +  N +  +          + +  + L++S N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 56  SLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCL------NNNNIGQIPANL 107
            + +       L EL    N      +   + NL  L    L      +  N+     ++
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 108 LKDCKALQNISLHNN 122
           ++    +        
Sbjct: 255 MEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGS-LRNLVLLNVSNNKLKSLPES 60
           +  N +  L      QL  L  L    N +      +    ++L   N++NN +  + E 
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

Query: 61  IGSCYSLEELQANDNLIGELPASICN 86
                 L+ ++     +  +    C 
Sbjct: 564 QK---FLQWVKEQKQFLVNVEQMTCA 586

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  ++I +L   +      LE+L++  N +  + +     L +L+ LN+S N L S+   
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 61  I-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
           +  +   LE L  + N I  L       L +LK L L+ N +  +P  +     +LQ I 
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401

Query: 119 LHNNP 123
           LH NP
Sbjct: 402 LHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 8e-13
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSLPE 59
           L  N I  L +    +L  L+ L +       +    T   L +L++L +  N+   L  
Sbjct: 37  LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96

Query: 60  SI-GSCYSLEELQANDNLI--GELPASI-CNLIHLKSLCLNNNNIGQI-PANLLKDCKAL 114
                  +LE L      +    L  +    L  L+ L L +NNI +I PA+   + +  
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 115 QNISLHNNPIS 125
             + L  N + 
Sbjct: 157 HVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 18/130 (13%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   TLDGNRITSLPDEL---GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSL 57
           +          +      +   ++   +  + +  L +++     +L  L ++ N++  +
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 58  PESI-GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115
            ++       L +L  + N +G + + +  NL  L+ L L+ N+I  +          L+
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 116 NISLHNNPIS 125
            ++L  N + 
Sbjct: 375 ELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 2   TLDGNRITSLPDE----LGQLVRLERL----------SILGNMLTCLPETI---GSLRNL 44
            L GN       +         +++ L          S                     +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

Query: 45  VLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQ 102
              ++S +K+ +L +S+      LE+L    N I ++  +    L HL  L L+ N +G 
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 103 IPANLLKDCKALQNISLHNNPIS 125
           I + + ++   L+ + L  N I 
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 10/134 (7%)

Query: 3   LDGNRI-TSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           ++       + +     L  L  L +  N    L       L NL +L ++   L     
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 60  SIGS---CYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDC--K 112
           S        SLE L   DN I ++   +   N+     L L  N +  I    L +   K
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

Query: 113 ALQNISLHNNPISM 126
               + L +  +  
Sbjct: 181 HFTLLRLSSITLQD 194

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 29/154 (18%)

Query: 1   MTLDGNRITSLPDEL---GQLVRLERLSILGNMLTCLPETIGS---------LRNLVLLN 48
           + L  N++ S+ +E     Q      L +    L  + E               ++  L+
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 49  VSNNKLKSLPESI------GSCYSLEELQANDNLIGELPASICNLIH-----------LK 91
           +S N  K            G+      L  + N+      +                 +K
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 92  SLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           +  L+ + I  +  ++      L+ ++L  N I+
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 43  NLVLLNVSNNKLKSLPESIGSCYS-LEELQANDNLIG-ELPASIC-NLIHLKSLCLNNNN 99
           ++  +++S N +  L E+  S    L+ L+      G  +  +    L  L  L L+ N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 100 IGQIPANLLKDCKALQNISLHNNPIS 125
             Q+          L+ ++L    + 
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 20/150 (13%)

Query: 2   TLDGNRITSL---PDELGQLVRLERLSILGNMLTCL-PETI-GSLRNLVLLNVSNNKLKS 56
           TL    +       +    L  LE L +  N +  + P +   ++R   +L+++ NK+KS
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 57  LPESI---GSCYSLEELQANDNLIGELPASIC---------NLIHLKSLCLNNNNIGQIP 104
           + E             L+ +   + ++                  + +L L+ N   +  
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 105 ANL---LKDCKALQNISLHNNPISMDQFQQ 131
           A           +Q++ L N+      F  
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 5e-15
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+ N I+ +   L  L +LE L +  N +T +   +  L  L  L++ +N++  +   + 
Sbjct: 116 LEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLA 172

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L+ L  + N I +L A +  L +L  L L +      P N   +      +   + 
Sbjct: 173 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 123 PISMDQFQQ 131
            +   +   
Sbjct: 232 SLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 1e-14
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
            L    +T       +L  ++++    + +  + + I  L N+  L ++ NKL  + + +
Sbjct: 27  NLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPL 83

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
            +  +L  L  ++N I +L  S+ +L  LKSL L +N I  I    L     L+++ L N
Sbjct: 84  TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGN 140

Query: 122 NPIS 125
           N I+
Sbjct: 141 NKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 40  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 99
           +    +  N+    +     +     S++++ AN++ I  +   I  L ++  L LN N 
Sbjct: 19  AFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK 76

Query: 100 IGQIPANLLKDCKALQNISLHNNPIS 125
           +  I    L + K L  + L  N I 
Sbjct: 77  LTDIKP--LTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 3/59 (5%)

Query: 67  LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           + E       I ++              L   ++         +  ++  I  +N+ I 
Sbjct: 1   MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 8e-15
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
            D   I S+   +  L  L +++   N LT +   + +L  LV + ++NN++  +   + 
Sbjct: 53  ADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA 109

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +  +L  L   +N I ++   + NL +L  L L++N I  I A  L    +LQ +S  N 
Sbjct: 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ 166

Query: 123 PISMDQFQQM 132
              +     +
Sbjct: 167 VTDLKPLANL 176

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+GN++  +   L  L  L  L +  N ++ L   +  L  L  L +  N++ ++   + 
Sbjct: 228 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNIS-PLA 284

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +L  L+ N+N + ++   I NL +L  L L  NNI  I    +     LQ +  +NN
Sbjct: 285 GLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341

Query: 123 PIS 125
            +S
Sbjct: 342 KVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 6/121 (4%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSC 64
           GN++T L   L  L  LERL I  N ++ +   +  L NL  L  +NN++  +   +G  
Sbjct: 164 GNQVTDLK-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGIL 220

Query: 65  YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
            +L+EL  N N + ++  ++ +L +L  L L NN I  +    L     L  + L  N I
Sbjct: 221 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 125 S 125
           S
Sbjct: 278 S 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 7/123 (5%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           ++ N+I  +   L  L  L  L++  N +T +   + +L NL  L +S+N +  +  ++ 
Sbjct: 97  MNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALS 153

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              SL++L   + +    P  + NL  L+ L +++N +  I    L     L+++   NN
Sbjct: 154 GLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNN 209

Query: 123 PIS 125
            IS
Sbjct: 210 QIS 212

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L    +T        L ++  L      +  +   +  L NL  +N SNN+L  +   + 
Sbjct: 31  LGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LK 87

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   L ++  N+N I ++   + NL +L  L L NN I  I    LK+   L  + L +N
Sbjct: 88  NLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144

Query: 123 PIS 125
            IS
Sbjct: 145 TIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L  N I+ +   +  L +L+RL    N ++ +   + +L N+  L+  +N++  L   + 
Sbjct: 316 LYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP-LA 372

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   + +L  ND      P +    + + +   N       PA  + D  +     +  N
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT-ISDGGSYTEPDITWN 431

Query: 123 PIS 125
             S
Sbjct: 432 LPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              N+++ +   L  L  +  LS   N ++ L   + +L  +  L +++    + P +  
Sbjct: 338 FYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYK 395

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP 104
           +  S+     N       PA+I +        +  N      
Sbjct: 396 ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 20  RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 79
            L   +I  +       T  +L   +   +    +     S      +  LQA+   I  
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKS 60

Query: 80  LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           +   +  L +L  +  +NN +  I    LK+   L +I ++NN I+
Sbjct: 61  IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.5 bits (170), Expect = 8e-15
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPE 59
              N +  +  E    L  L+ L I    +  LP+   I SL+ ++L    N  + ++  
Sbjct: 87  EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 60  SI--GSCYSLEELQANDNLIGELPASICNLIHLKSLCL-NNNNIGQIPANLLKDCKALQN 116
           +   G  +    L  N N I E+  S  N   L  L L +NNN+ ++P ++         
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 117 ISLHNNPISM 126
           + +    I  
Sbjct: 207 LDISRTRIHS 216

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSL--PDELGQLVRLERLSIL-GNMLTCLPETI-GSLRNLVLLNVSNNKLKSLP 58
           +  N +  +   D    L +L  + I   N L  +      +L NL  L +SN  +K LP
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

Query: 59  ESI-GSCYSLEELQANDNL-IGELPA-SICNL-IHLKSLCLNNNNIGQIPANLLKDCKAL 114
           +           L   DN+ I  +   S   L      L LN N I +I  +     +  
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 115 QNISLHNNPIS 125
           +     NN + 
Sbjct: 181 ELNLSDNNNLE 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSN-NKLKSLP 58
               ++  +          LE++ I  N +  +   +   +L  L  + +   N L  + 
Sbjct: 37  FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96

Query: 59  ESI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLN-NNNIGQIPANLLKDCKA-L 114
                +  +L+ L  ++  I  LP     + +    L +  N NI  I  N         
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 115 QNISLHNNPIS 125
             + L+ N I 
Sbjct: 157 VILWLNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE-LPASI- 84
            + +T +P  +   RN + L     KL+ + +        LE+++ + N + E + A + 
Sbjct: 18  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 85  CNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPIS 125
            NL  L  + +   NN+  I     ++   LQ + + N  I 
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNM-LTCLPETI-GSLRNLVLLNVSNNKLKSLP 58
           + L+ N I  + +      +L+ L++  N  L  LP  +       V+L++S  ++ SLP
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 59  ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNN 98
                  +L++L+A      +   ++  L+ L    L   
Sbjct: 219 S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI--GSLRNLVLLNVSNN-KLKSLP 58
           L  N +++L       L  L  L++LGN    L ET     L  L +L V N      + 
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 59  ESI-GSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
                    LEEL+ + + +      S+ ++ ++  L L+      +    +    +++ 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 117 ISLHNNPISMDQFQQ 131
           + L +  +    F +
Sbjct: 227 LELRDTDLDTFHFSE 241

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N I ++ ++    L  LE L +  N L+ L  +    L +L  LN+  N  K+L E+
Sbjct: 83  LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142

Query: 61  I--GSCYSLEELQANDN-LIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
                   L+ L+  +     ++       L  L+ L ++ +++       LK  + + +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 117 ISLHNNPISM 126
           + LH     +
Sbjct: 203 LILHMKQHIL 212

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLP 58
           + +D + + S   + L  +  +  L +       L E       ++  L + +  L +  
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 59  ---------ESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLK 109
                     S+   ++   ++  D  + ++   +  +  L  L  + N +  +P  +  
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD 298

Query: 110 DCKALQNISLHNNP 123
              +LQ I LH NP
Sbjct: 299 RLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  NRIT +   +L + V L+ L +  N +  + E    SL +L  L++S N L +L  S
Sbjct: 59  LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118

Query: 61  I-GSCYSLEELQANDNLIGELPASIC--NLIHLKSL-CLNNNNIGQIPANLLKDCKALQN 116
                 SL  L    N    L  +    +L  L+ L   N +   +I          L+ 
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 117 ISLHNNPIS 125
           + +  + + 
Sbjct: 179 LEIDASDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNM-LTCLPE-TIGSLRNLVLLNVSNNKLKSLP 58
           L GN   +L +      L +L+ L +      T +       L  L  L +  + L+S  
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190

Query: 59  -ESIGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIP--------ANLL 108
            +S+ S  ++  L  +      L          ++ L L + ++             N L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 109 KDCKALQNISLHNNPIS 125
                 +N+ + +  + 
Sbjct: 251 IKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGELPASI-C 85
              L  +P  +     +  L++SNN++  +  S    C +L+ L    N I  +      
Sbjct: 40  SGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           +L  L+ L L+ N +  + ++  K   +L  ++L  NP  
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES 60
            + +  T +  +    L  LE L I  + L     +++ S++N+  L +   +   L E 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 61  I-GSCYSLEELQANDNLIGELP---------ASICNLIHLKSLCLNNNNIGQIPANLLKD 110
                 S+E L+  D  +              S+      +++ + + ++ Q+   LL  
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQ 275

Query: 111 CKALQNISLHNNPISM 126
              L  +    N +  
Sbjct: 276 ISGLLELEFSRNQLKS 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-----ETIGSLRNLVLLNVSNNKLK 55
           + L  N + +          +  L  L   L  L       T     ++++LN+S+N L 
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 56  SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115
                      ++ L  ++N I  +P  + +L  L+ L + +N +  +P  +     +LQ
Sbjct: 442 GSVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 116 NISLHNNP 123
            I LH+NP
Sbjct: 501 YIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N I+ L   ++  L  L  L +  N +  L   +    ++L  L+VS+N+L+++   
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-- 116

Query: 61  IGSCYSLEELQANDNLIGELPASIC--NLIHLKSLCLNNNNIGQIPANLLK 109
                SL  L  + N    LP      NL  L  L L+     Q+    + 
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  +    +             L+   N+ T        +L+ L  L +  N LK+  + 
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 61  IGSCYSLEELQANDNLIGELPASICNLI---------------------------HLKSL 93
                ++  L+  D  +  L +   +                              +K L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL 455

Query: 94  CLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
            L+NN I  IP ++    +ALQ +++ +N +
Sbjct: 456 DLHNNRIMSIPKDVTHL-QALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 47  LNVSNNKLKSLPES-IGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIP 104
           L++S N +  L    I     L  L+ + N I  L   +      L+ L +++N +  I 
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 105 ANLLKDCKALQNISLHNNPIS 125
              +    +L+++ L  N   
Sbjct: 117 CCPM---ASLRHLDLSFNDFD 134

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.9 bits (161), Expect = 5e-14
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
                I  +   L  L   + L++  N +  +  ++  + NL +L++  N +K +     
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENLDA 90

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHN 121
              +LEEL  + N I  L + I  L++L+ L ++NN I      + L     L+++ L  
Sbjct: 91  VADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 122 NPISMDQFQQME 133
           NP+  D  +   
Sbjct: 150 NPLYNDYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 23  RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82
            L  +   +  +  T+ +L+    L +S N ++ +  S+    +L  L    NLI ++  
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 83  SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
                  L+ L ++ N I  +    ++    L+ + + NN I+
Sbjct: 88  LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 44  LVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI 103
            V L+     ++ +  ++ +  + + L  + N I ++ +S+  + +L+ L L  N I +I
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKI 85

Query: 104 PANLLKDCKALQNISLHNNPIS 125
             NL      L+ + +  N I+
Sbjct: 86  E-NLDAVADTLEELWISYNQIA 106

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-P 58
           +               L  LE L + GN      LP+    LRNL  L++S  +L+ L P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 59  ESIGSCYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQN 116
            +  S  SL+ L  + N            L  L+ L  + N+I       L     +L  
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 117 ISLHNNPIS 125
           ++L  N  +
Sbjct: 548 LNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 8e-14
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLKS--L 57
              + +  + +      L  L  L I               L +L +L ++ N  +   L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 58  PESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
           P+      +L  L  +   L    P +  +L  L+ L +++NN   +     K   +LQ 
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 117 ISLHNNPIS 125
           +    N I 
Sbjct: 523 LDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PE 59
           L    I ++       L  L  L + GN +  L       L +L  L      L SL   
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 60  SIGSCYSLEELQANDNLI--GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN- 116
            IG   +L+EL    NLI   +LP    NL +L+ L L++N I  I    L+    +   
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 117 ---ISLHNNPIS 125
              + L  NP++
Sbjct: 179 NLSLDLSLNPMN 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIG 62
                 +PD L      + L +  N L  L   +  S   L +L++S  +++++   +  
Sbjct: 16  ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 63  SCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
           S   L  L    N +      +   L  L+ L     N+  +    +   K L+ +++ +
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 122 NPIS 125
           N I 
Sbjct: 134 NLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLT---CLPETIGSLRNLVLLNVSNNKLKSLP 58
           T   N+  +   E+  L  LE L +  N L+   C  ++     +L  L++S N + ++ 
Sbjct: 331 TFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 59  ESIGSCYSLEELQANDN-LIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
            +      LE L    + L      S+  +L +L  L +++ +       +     +L+ 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 117 ISLHNNPIS 125
           + +  N   
Sbjct: 450 LKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 3   LDGNRITSL--PDELGQLVRLERLSILGNMLTCL-PETIGSLRNL----VLLNVSNNKLK 55
           +  N I S   P+    L  LE L +  N +  +    +  L  +    + L++S N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 56  SLPESIGSCYSLEELQANDNLIGE--LPASICNLIHLKSLCL---NNNNIGQIPANLLKD 110
            +         L +L   +N      +   I  L  L+   L      N G +       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 111 CKALQNISLHNNPIS 125
            + L N+++    ++
Sbjct: 251 LEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 23  RLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82
           RL+ L   L  + +    L N+   ++ +  ++ +       +  + L+  +   G+ P 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT 321

Query: 83  SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
               L  LK L   +N  G   + +  D  +L+ + L  N +S 
Sbjct: 322 --LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 23/156 (14%), Positives = 39/156 (25%), Gaps = 37/156 (23%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLT-----------------------------C 33
           L  N +  +     + +RL +L++  N  +                              
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 34  LPETIGSLRNLVLLNVSNNKLKSL-------PESIGSCYSLEELQANDNLIGELPASICN 86
                 +L  L  L +   +L  L        +      ++         I  +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSY 302

Query: 87  LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               + L L N   GQ P   LK  K L   S    
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 50  SNNKLKSLPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLL 108
                  +P+++    S + L  + N +  L   S  +   L+ L L+   I  I     
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 109 KDCKALQNISLHNNPIS 125
           +    L  + L  NPI 
Sbjct: 73  QSLSHLSTLILTGNPIQ 89

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES 60
           L   ++  L P     L  L+ L++  N    L       L +L +L+ S N + +  + 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 61  I--GSCYSLEELQANDN-LIGELPAS--ICNLIHLKSLCLNNNNI-GQIPANL 107
                  SL  L    N           +  +   + L +    +    P++ 
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 23/122 (18%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESI 61
           LDGN+ T +P EL     L  + +  N ++ L   +  ++  L+ L +S N+L+ +P   
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
                                    L  L+ L L+ N+I  +P     D  AL ++++  
Sbjct: 98  FD----------------------GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135

Query: 122 NP 123
           NP
Sbjct: 136 NP 137

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 3   LDGNRITSLPDELG---QLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSL 57
           L  N++  L        Q+  L++L I  N ++           ++L+ LN+S+N L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 58  PESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
                    ++ L  + N I  +P  +  L  L+ L + +N +  +P  +     +LQ I
Sbjct: 415 IFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 118 SLHNNP 123
            LH NP
Sbjct: 474 WLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 7/140 (5%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPET-IGSLRNLVLLNVSNNKLKSLPESI 61
              N +  +P +L    +   L+I  N ++ L  + I SL  L +L +S+N+++ L  S+
Sbjct: 7   RSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 62  -GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISL 119
                 LE L  + N + ++       ++LK L L+ N    +P      +   L+ + L
Sbjct: 65  FKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 120 HNNPISMDQFQQMEGFEEFE 139
               +       +      +
Sbjct: 123 STTHLEKSSVLPIAHLNISK 142

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 1   MTLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLP 58
                +    +      ++     L    N+LT       G L  L  L +  N+LK L 
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 59  ESIG---SCYSLEELQANDN-LIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKA 113
           +         SL++L  + N +  +     C     L SL +++N +       L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422

Query: 114 LQNISLHNNPIS 125
           ++ + LH+N I 
Sbjct: 423 IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 6/131 (4%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES- 60
           +  NRI  L          LE L +  N L  +        NL  L++S N   +LP   
Sbjct: 52  ISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICK 109

Query: 61  -IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
             G+   L+ L  +   + +        +++  + L             +  +     SL
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET-YGEKEDPEGLQDFNTESL 168

Query: 120 HNNPISMDQFQ 130
           H    +  +F 
Sbjct: 169 HIVFPTNKEFH 179

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 20/150 (13%), Positives = 43/150 (28%), Gaps = 9/150 (6%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPES 60
           L  N++  +       V L+ L +  N    LP     G++  L  L +S   L+     
Sbjct: 76  LSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 61  I---GSCYSLEELQANDNLIGELPASICNL--IHLKSLCLNNNNIGQIPANLLKDCKALQ 115
                +   +  +        E P  + +     L  +   N     I    +K    L+
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 116 NISLHNNPISMDQFQQMEGFEEFEARRRKK 145
             ++            +    + +   +  
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 43  NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNNNIG 101
           +  L++ S N L  +P+ +        L  + N I EL  S I +L  L+ L +++N I 
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 102 QIPANLLKDCKALQNISLHNNPIS 125
            +  ++ K  + L+ + L +N + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLV 82

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 3   LDGNRITSLPDE-LGQLVRLERLSILGNMLTCL--PETIGSLRNLVLLNVSNNKLKSLPE 59
           L  N I ++       L +L+ L +           E   +L NL +L++ ++K+  L  
Sbjct: 31  LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 60  SI-GSCYSLEELQANDNLIGEL---PASICNLIHLKSLCLNNNNIGQIPAN-LLKDCKAL 114
                 + L EL+     + +         NL  L  L L+ N I  +  +       +L
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150

Query: 115 QNISLHNNPIS 125
           ++I   +N I 
Sbjct: 151 KSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 3   LDGNRITSLPDEL---GQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLP 58
              + I               +  L +    +  L      +L++L +LN++ NK+  + 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 59  ESI-GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
           +       +L+ L  + NL+GEL +S    L  +  + L  N+I  I     K  + LQ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 117 ISLHNNPISMDQF 129
           + L +N ++   F
Sbjct: 367 LDLRDNALTTIHF 379

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPET--IGSLRNLVLLNVSNNKLKSLPES 60
           L GN++ +LP      +    + +  N L  L     +  + +L +L ++ N+  S    
Sbjct: 388 LSGNKLVTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 61  --IGSCYSLEELQANDNLIGELPASIC------NLIHLKSLCLNNNNIGQIPANLLKDCK 112
                  SLE+L   +N++     +         L HL+ L LN+N +  +P  +     
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 113 ALQNISLHNNPIS 125
           AL+ +SL++N ++
Sbjct: 505 ALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 9/127 (7%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSL--PESI 61
              +T +P  L      ERL +  N +  +  +    L  L LL + +         E+ 
Sbjct: 13  FCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 62  GSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNI--GQIPANLLKDCKALQNIS 118
            +  +L  L    + I  L       L HL  L L    +    +     ++ KAL  + 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 119 LHNNPIS 125
           L  N I 
Sbjct: 130 LSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 10/137 (7%)

Query: 3   LDGNRITSL--PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-- 57
           L           +    L  L  L +  + +  L       L +L  L +    L     
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 58  -PESIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPANLLKDCKA- 113
                 +  +L  L  + N I  L    S   L  LKS+  ++N I  +  + L+  +  
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 114 -LQNISLHNNPISMDQF 129
            L   SL  N +     
Sbjct: 175 TLSFFSLAANSLYSRVS 191

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 2   TLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE 59
            L  N+I  + DE    L  L+ L++  N+L  L       L  +  +++  N +  + +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 60  SI-GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
                   L+ L   DN +     +I  +  +  + L+ N +  +P   L        I 
Sbjct: 356 QTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIH 407

Query: 119 LHNNPIS 125
           L  N + 
Sbjct: 408 LSENRLE 414

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 1   MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 59
           + L  N I  + D+    L +L+ L +  N LT +      + ++  + +S NKL +LP+
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPK 398

Query: 60  SIGSCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPAN-LLKDCKALQN 116
                 +   +  ++N +  L     +  + HL+ L LN N       +    +  +L+ 
Sbjct: 399 ---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 117 ISLHNNPIS 125
           + L  N + 
Sbjct: 456 LFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 3   LDGNRITSL------PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLK 55
           L  N +          D    L  L+ L +  N L  LP      L  L  L++++N+L 
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 56  SLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115
            L  +     +LE L  + N +      +   + +  +  +N  I +   +   +     
Sbjct: 518 VLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDI-THNKFICECELSTFINWLNHT 575

Query: 116 NISLHNNPISM 126
           N+++   P  +
Sbjct: 576 NVTIAGPPADI 586

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 27/150 (18%)

Query: 3   LDGNRITSL---PDELGQLVRLERLSILGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSL 57
           L    ++           L  L RL +  N +  L    + G L +L  ++ S+N++  +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 58  PESI---GSCYSLEELQANDNLIGELPASIC-------NLIHLKSLCLNNNNIGQIPANL 107
            E         +L       N +    +            + L+ L ++ N         
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

Query: 108 ------------LKDCKALQNISLHNNPIS 125
                       L     +       + I 
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+ N I+ +   L  L +LE L +  N +T +   +  L  L  L++ +N++  +   + 
Sbjct: 119 LEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLA 175

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L+ L  + N I +L A +  L +L  L L +      P N   +      +   + 
Sbjct: 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 123 PI 124
            +
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           LD N++  L   L  L +L+ LS+  N ++ +   +  L  L  L + NNK+  +   + 
Sbjct: 97  LDENKVKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLS 153

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L+ L   DN I ++   +  L  L++L L+ N+I  + A  L   K L  + L + 
Sbjct: 154 RLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ 210

Query: 123 PISMDQ 128
                 
Sbjct: 211 ECLNKP 216

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L    +T       +L  ++++    + +  + + I  L N+  L ++ NKL  + + + 
Sbjct: 31  LKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLA 87

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +  +L  L  ++N + +L  S+ +L  LKSL L +N I  I    L     L+++ L NN
Sbjct: 88  NLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN 144

Query: 123 PIS 125
            I+
Sbjct: 145 KIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 36  ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCL 95
            +  +    +  N+    +     +     S++++ AN++ I  +   I  L ++  L L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFL 75

Query: 96  NNNNIGQIPANLLKDCKALQNISLHNNPIS 125
           N N +  I    L + K L  + L  N + 
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVK 103

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
           +  G  +T++   +  L  L  L +  N +T L   + +L  +  L +S N LK++  +I
Sbjct: 47  SAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-SAI 103

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               S++ L      I ++   +  L +L+ L L+ N I  I    L     LQ +S+ N
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 122 NPIS 125
             +S
Sbjct: 161 AQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 3e-12
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
               + +T        L  +  LS  G  +T + E +  L NL+ L + +N++  L   +
Sbjct: 25  AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-L 81

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
            +   + EL+ + N +  + A I  L  +K+L L +  I  +    L     LQ + L  
Sbjct: 82  KNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 138

Query: 122 NPIS 125
           N I+
Sbjct: 139 NQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 5e-10
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           LD N+IT++   L  L  L+ LSI    ++ L   + +L  L  L   +NK+  +   + 
Sbjct: 136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PLA 192

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           S  +L E+   +N I ++   + N  +L  + L N  I   P     +      +   + 
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 40  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 99
           +L N + +    + +     +      +  L A    +  +   +  L +L  L L +N 
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 100 IGQIPANLLKDCKALQNISLHNNPIS 125
           I  +    LK+   +  + L  NP+ 
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK 98

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 25/123 (20%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N++ +LP  +   L +L  L +  N LT LP  +   L +L  L +  NKL  LP  
Sbjct: 71  LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           I                         L HL  L L+ N +  IP        +L +  L 
Sbjct: 131 IE-----------------------RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167

Query: 121 NNP 123
            NP
Sbjct: 168 GNP 170

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           + L    I     +    VR   L + G  +  +     +L     ++ S+N+++ L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 61  IGSCYSLEELQANDNLIGELPASI-CNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNIS 118
                 L+ L  N+N I  +   +   L  L  L L NN++ ++   + L   K+L  + 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 119 LHNNPISMDQ 128
           +  NP++  +
Sbjct: 120 ILRNPVTNKK 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPES 60
           ++    T+  + +  L  LERL I+G  +T      +  L +L LL++S++    S+   
Sbjct: 73  INNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           I +   +  +  + N        +  L  LKSL +  + +       ++D   L  +   
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 121 NNPIS 125
           +  I 
Sbjct: 190 SQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
            L  +   ++     Q+  L  +++    +T L   I    N+  L ++N    +    I
Sbjct: 29  LLGQSSTANI--TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPI 84

Query: 62  GSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
               +LE L+     +  +   ++  L  L  L ++++         +     + +I L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 121 NNP 123
            N 
Sbjct: 145 YNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 3   LDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES 60
           + G  +TS     L  L  L  L I  +         I +L  +  +++S N   +    
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI 103
           + +   L+ L    + + +    I +   L  L   +  IG  
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 37  TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN 96
           T   + +L  + ++N  +  L   I   +++++L  N+         I  L +L+ L + 
Sbjct: 39  TEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIM 96

Query: 97  NNNIGQIPANLLKDCKALQNISLHNNPIS 125
             ++       L    +L  + + ++   
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 24/123 (19%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L+ N++ SLP  +  +L +L +LS+  N +  LP+ +   L  L +L +  NKL+SLP  
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +                         L  LK L L+ N +  +P  +     +LQ I LH
Sbjct: 95  VFD----------------------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132

Query: 121 NNP 123
            NP
Sbjct: 133 TNP 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 31/123 (25%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              N IT+L   L Q   L  L+   N LT L   +  L  L  LN   NKL  L   + 
Sbjct: 71  CTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VS 124

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L  L    N + E+  S  +   L  L  + N         +     L  +    N
Sbjct: 125 QNPLLTYLNCARNTLTEIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 123 PIS 125
            I+
Sbjct: 181 KIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 10/130 (7%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
            D N IT L   L Q ++L  L    N LT +   +  L  L   + S N L  L  S  
Sbjct: 198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS-- 251

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           +   L  L      + E+  +  +   L           +I    +     L  +     
Sbjct: 252 TLSKLTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCR--KIKELDVTHNTQLYLLDCQAA 307

Query: 123 PISMDQFQQM 132
            I+     Q 
Sbjct: 308 GITELDLSQN 317

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
              N+  +  D +    +L  L    N +T L   +   + L  LN   N +  L   + 
Sbjct: 155 CHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LN 209

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               L  L  + N + E+   +  L  L     + N + ++  + L     L  +     
Sbjct: 210 QNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQT 264

Query: 123 PIS 125
            + 
Sbjct: 265 DLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
             +     ++     QL  L  L    + +T +   I  L  L  L  ++N + +L   +
Sbjct: 27  AFEMQATDTIS--EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--L 81

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
               +L  L  + N +  L   +  L  L  L  + N + ++    +     L  ++   
Sbjct: 82  SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR 136

Query: 122 NPIS 125
           N ++
Sbjct: 137 NTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 2   TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
                    + + ++    +L  L      +T L   +     LV L ++N +L  L   
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD-- 334

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
           +     L+ L   +  I +   S+  +  L +          +P   L +      +S 
Sbjct: 335 VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 10/124 (8%)

Query: 2   TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI 61
               N +T L   +  L +L  L  +   L  +   +     L+       +     + +
Sbjct: 239 DCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD-V 293

Query: 62  GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121
                L  L      I EL   +     L  L LNN  + ++    +     L+++S  N
Sbjct: 294 THNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVN 348

Query: 122 NPIS 125
             I 
Sbjct: 349 AHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
                IT L   L Q  +L  L +    LT L   +     L  L+  N  ++     +G
Sbjct: 304 CQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VG 358

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +L      +     +P        L ++ ++ + + Q    +  +           N
Sbjct: 359 KIPALNNNFEAEGQTITMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 123 PISMDQF 129
            I+ +  
Sbjct: 418 TITWENL 424

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 41  LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI 100
             + V          ++ E      +L  L  +++ I ++   I  L  L  L   +NNI
Sbjct: 20  FASEVAAAFEMQATDTISEE--QLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76

Query: 101 GQIPANLLKDCKALQNISLHNNPIS 125
             +    L     L  ++  +N ++
Sbjct: 77  TTLD---LSQNTNLTYLACDSNKLT 98

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)

Query: 3   LDGNRITSLP--DELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L GN++  +       +L  L  L + GN L  LP  +   L NL  L +  N+L+SLP+
Sbjct: 70  LGGNKLHDISALK---ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126

Query: 60  SI-GSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
            +     +L  L    N +  LP  +   L +L  L L+ N +  +P  +      L+++
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 118 SLHNN 122
            L+ N
Sbjct: 187 RLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 24/123 (19%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L  N++ SLPD +  +L  L  L++  N L  LP+ +   L NL  L++S N+L+SLPE 
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +                         L  LK L L  N +  +P  +     +LQ I LH
Sbjct: 176 VFD----------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213

Query: 121 NNP 123
           +NP
Sbjct: 214 DNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 22  ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81
            + ++    +T        L ++  +  +N+ +KS+   I    ++  L    N + ++ 
Sbjct: 22  IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS 79

Query: 82  ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           A +  L +L  L L  N +  +P  +      L+ + L  N
Sbjct: 80  A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 24/123 (19%)

Query: 3   LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPES 60
           L GN++ SLP+ +  +L  L  L++  N L  LP  +   L  L  L ++ N+L+SLP+ 
Sbjct: 59  LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           +                         L  LK L L  N +  +P  +     +LQ I LH
Sbjct: 119 VFD----------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156

Query: 121 NNP 123
           +NP
Sbjct: 157 DNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 22  ERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIGE 79
             L +  N L  LP  +   L +L  L +  NKL+SLP  +     SL  L  + N +  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 80  LPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
           LP  + + L  LK L LN N +  +P  +      L+++ L+ N
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 25/124 (20%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
           L+ N +  +  +   G+L  L +L +  N LT +         ++  L +  NK+K +  
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95

Query: 60  SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
            +                         L  LK+L L +N I  +     +   +L +++L
Sbjct: 96  KMFL----------------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 120 HNNP 123
            +NP
Sbjct: 134 ASNP 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES 60
           M +       L +     VR   L    +    +        NL  L++ N  L S+  +
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN 66

Query: 61  IGSCYSLEELQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNIS 118
           +     L++L+ ++N I      +   L +L  L L+ N +  I     LK  + L+++ 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 119 LHNNPIS 125
           L N  ++
Sbjct: 127 LFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 5   GNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG-S 63
            +    +     + V LE LS++   L  +   +  L  L  L +S N++    + +   
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93

Query: 64  CYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIP 104
             +L  L  + N + ++     +  L  LKSL L N  +  + 
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 9/126 (7%)

Query: 6   NRITSLPDEL-GQLVRLERLSILGN-MLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE--S 60
             +  L       L ++  + I     LT +  + +  L  L  L + N  LK  P+   
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 61  IGSCYSLEELQANDNL-IGELPA-SICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNI 117
           + S      L+  DN  +  +P  +   L     +L L NN    +        K L  +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAV 184

Query: 118 SLHNNP 123
            L+ N 
Sbjct: 185 YLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 3   LDGNRITSLP-DELGQLVRLERLSILGNM-LTCLPETI-GSLRNLVLLNVSNNK-LKSLP 58
           L    + ++P      L  + R+ +  ++ L  L      +L  +  + + N + L  + 
Sbjct: 38  LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 59  ESI-GSCYSLEELQANDNLIGELPA--SICNLIHLKSLCL-NNNNIGQIPANLLKD-CKA 113
                    L+ L   +  +   P    + +      L + +N  +  IP N  +  C  
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 114 LQNISLHNNPIS 125
              + L+NN  +
Sbjct: 158 TLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 3   LDGNRITSLPDE--LGQLVRLERLSILGNM-LTCLPE-TIGSLRN-LVLLNVSNNKLKSL 57
           +    +   PD   +        L I  N  +T +P      L N  + L + NN   S+
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

Query: 58  PESIGSCYSLEELQANDN-LIGELPASI-CNLIH-LKSLCLNNNNIGQIPANLLKDCKAL 114
                +   L+ +  N N  +  +       +      L ++  ++  +P+  L+  K L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

Query: 115 QNISLHN 121
              +   
Sbjct: 232 IARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 16/110 (14%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 21  LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL-IG 78
            E   +    +  +P       +   L +    L+++P  +  +  ++  +  + ++ + 
Sbjct: 13  EEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 79  ELPASI-CNLIHLKSLCL-NNNNIGQIPANLLKDCKALQNISLHNNPISM 126
           +L +    NL  +  + + N  N+  I  + LK+   L+ + + N  + M
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGN-MLTCLPETI--GSLRNLVLLNVSNNKLKSL 57
           + L  N  TS+        +L+ + +  N  LT + +    G      LL+VS   + +L
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

Query: 58  PESIGSCYSLEELQANDN 75
           P        L+EL A + 
Sbjct: 221 PS--KGLEHLKELIARNT 236

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 31  LTCLPETIGSLRNLVLLNVSNNK-LKSLP-ESIGSCYSLEELQANDNLIGELPASI-CNL 87
                  +    NL  L + N + L+ L    +     L  L    + +  +        
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 88  IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127
             L  L L+ N +  +    ++    LQ + L  NP+   
Sbjct: 80  PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 6   NRITSLPDE-LGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGS 63
             +  L    L  L  L  L+I+ + L  + P+       L  LN+S N L+SL      
Sbjct: 42  QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

Query: 64  CYSLEELQANDN 75
             SL+EL  + N
Sbjct: 102 GLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 50  SNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANL 107
           + +        +    +L EL   N   +  L    +  L  L++L +  + +  +  + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 108 LKDCKALQNISLHNNPIS 125
                 L  ++L  N + 
Sbjct: 76  FHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 7/64 (10%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHN 121
             +    L+   +   +    +    +L  L + N   +  +    L+    L+N+++  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 122 NPIS 125
           + + 
Sbjct: 66  SGLR 69

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
                I  +      L    + ++    +T L  +   L  +   N  N+ ++SL   + 
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGMQ 60

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +L+EL  + N I +L   + +L  L+ L +N N +  +          L  + L NN
Sbjct: 61  FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNN 116

Query: 123 PIS 125
            + 
Sbjct: 117 ELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           ++ NR+ +L         L RL +  N L    +++  L+NL +L++ NNKLKS+   +G
Sbjct: 92  VNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLG 147

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
               LE L  + N I      +  L  +  + L        P     +      +   + 
Sbjct: 148 FLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 24  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 83
           L    +    L         L  L+  N  L S+  ++     L++L+ +DN +      
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 84  IC-NLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQ 128
           +     +L  L L+ N I  +     LK  + L+++ L N  ++   
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 2   TLDGNRITSLPDE--LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE 59
            LD +R      E    +   LE LS +   LT +   +  L  L  L +S+N++    E
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE 81

Query: 60  SIG-SCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIP 104
            +   C +L  L  + N I +L     +  L +LKSL L N  +  + 
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 40  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 99
            ++ LVL N  +N+ K L         LE L   +  +  + A++  L  LK L L++N 
Sbjct: 18  DVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR 75

Query: 100 IGQIPANLLKDCKALQNISLHNNPIS 125
           +      L + C  L +++L  N I 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK 101

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 3   LDGNRITSLPDE----LGQLVRLERLSILGNMLTCLPETIGS--LRNLVLLNVSNNKLKS 56
           L    + +            V+L+ L +  N L              L  LN+S   LK 
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 57  LPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI 100
           +P+ + +   L  L  + N +   P S   L  + +L L  N  
Sbjct: 268 VPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 15  LGQLVRLERLSILGNMLTCLPETIGSL----RNLVLLNVSNNKLKSLPESIGSCY--SLE 68
             +   L+ L++    +        +L      L  L++S+N L+    +    +   L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 69  ELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
            L  +   + ++P  +     L  L L+ N + + P+    +   + N+SL  NP 
Sbjct: 257 SLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 15/136 (11%)

Query: 2   TLDGNRITSLP-DELGQLVRLERLSILGNMLT---CLPETI--GSLRNLVLLNVSNNKLK 55
           ++      +   +++     L  L +  N       L   +       L +L + N  ++
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 56  SLPESIGSC----YSLEELQANDNLIGELPASI--CNLIHLKSLCLNNNNIGQIPANLLK 109
           +      +       L+ L  + N + +   +        L SL L+   + Q+P  L  
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273

Query: 110 DCKALQNISLHNNPIS 125
               L  + L  N + 
Sbjct: 274 --AKLSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 21  LERLSILGNMLTCLPETIG--SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG 78
           +    I   +L      +G   L+ L L N+        P    +   L  L   +    
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 79  ELPASICNLI-----HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
              A +  L       LK L +   +        ++   AL  + L +NP  
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 25/121 (20%)

Query: 4   DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIG 62
            G  + S+P   G     + L +  N +T L   +   L  L  L++ NN+L  LP  + 
Sbjct: 17  SGKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
                                   L  L  L LN+N +  IP     + K+L +I L NN
Sbjct: 75  D----------------------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

Query: 123 P 123
           P
Sbjct: 113 P 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 3  LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
          L  N+IT L   +  +L +L RL +  N LT LP  +   L  L  L++++N+LKS+P 
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 9e-07
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 25/121 (20%)

Query: 4   DGNRITSLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIG 62
              R+ S+P   G     +RL +  N +T L   +   L NL  L  ++NKL ++P  + 
Sbjct: 20  QNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
                                   L  L  L LN+N++  IP     + K+L +I L+NN
Sbjct: 78  D----------------------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

Query: 123 P 123
           P
Sbjct: 116 P 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 3  LDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPE 59
          L+ N+IT L   +   LV L++L    N LT +P  +   L  L  L++++N LKS+P 
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR 98

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 25/130 (19%)

Query: 21  LERLSILGNMLT-----CLPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCYSLEEL 70
           +E  S+  + +T      +   +    ++  + +S N +     + L E+I S   LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 71  QANDNLIGELPA-----------SICNLIHLKSLCLNNNNIG----QIPANLLKDCKALQ 115
           + +D   G +             ++     L ++ L++N  G    +   + L     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 116 NISLHNNPIS 125
           ++ LHNN + 
Sbjct: 126 HLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 23/120 (19%)

Query: 31  LTCLPETIGSLRNLVLLNVSNNKL-----KSLPESIGSCYSLEELQANDNLIGE------ 79
           L  L + +     L  + +S+N       + L + +     LE L  ++N +G       
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 80  --------LPASICNLIHLKSLCLNNNNIG----QIPANLLKDCKALQNISLHNNPISMD 127
                   +     N   L+S+    N +     +  A   +  + L  + +  N I  +
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 21/127 (16%)

Query: 20  RLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKL-----KSLPESIGSC-YSLE 68
           RLE+L +    L+      L   + +  +   L VSNN +     + L + +      LE
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 69  ELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIG-----QIPANLLKDCKALQNIS 118
            L+     +       L   + +   L+ L L +N +G     ++   LL     L+ + 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 119 LHNNPIS 125
           +    I+
Sbjct: 263 IWECGIT 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 68/195 (34%)

Query: 7   RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL------------ 54
           RI S+  EL +L++ +          CL         LVLLNV N K             
Sbjct: 226 RIHSIQAELRRLLKSKPYE------NCL---------LVLLNVQNAKAWNAFNLSCKILL 270

Query: 55  ----KSLPESIGSCYS----------------LEELQAN--DNLIGELPASICNLIHLKS 92
               K + + + +  +                ++ L     D    +LP  +      + 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR- 329

Query: 93  LCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM--EGFEEFEARRRKK----F 146
                  +  I    ++D  A  +   H N   +    +      E  E R+       F
Sbjct: 330 -------LSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 147 DKQIDSNVMISSKGL 161
                 +  I +  L
Sbjct: 382 PP----SAHIPTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.68
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.51
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.28
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.55
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.86

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.9e-19  Score=127.83  Aligned_cols=128  Identities=32%  Similarity=0.479  Sum_probs=116.3

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+..+ |..+..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.+
T Consensus        45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence            47889999976 667899999999999999999987 457899999999999999998865 568899999999999999


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      +.+|..+..+++|++|++++|.+..++...+..+++|+.+++++|++.+..
T Consensus       125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999999999999999999999999998877899999999999999999763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.2e-19  Score=126.81  Aligned_cols=127  Identities=29%  Similarity=0.456  Sum_probs=110.8

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|+|+.++. .|..+++|++|++++|+++.+ |..|..+++|+.|++++|.++.+|+. |..+++|+.|++++|.+
T Consensus        37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence            4677888887754 688899999999999999986 67889999999999999999988764 67899999999999999


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.+ +..+..+++|++|++++|.+..++...+..+++|+.+++++|++.++
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            877 56788899999999999999988887788999999999999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.79  E-value=4.8e-19  Score=122.75  Aligned_cols=126  Identities=25%  Similarity=0.430  Sum_probs=113.7

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +++++++++.+|..+  .+.+++|++++|.++.+|..|..+++|+.|++++|.++.+++ .|..+++|++|++++|.++.
T Consensus        15 l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            356788899998754  368999999999999999999999999999999999998854 68999999999999999998


Q ss_pred             cc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           80 LP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++ ..+..+++|++|++++|.+..++..++..+++|+.+++++|++.++.
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            85 57889999999999999999999988999999999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=8.4e-19  Score=123.80  Aligned_cols=128  Identities=20%  Similarity=0.306  Sum_probs=110.3

Q ss_pred             CcccCCCCCCCc--hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSLP--DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|+++.++  ..+..+++|++|++++|.++.+++ .|..+++|+.|++++|.++.+++ .+..+++|++|++++|.
T Consensus        37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence            467788888663  237889999999999999998764 78999999999999999998855 58889999999999999


Q ss_pred             CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++.+ |..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.++.
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            9877 677888999999999999998887666899999999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=6.2e-18  Score=118.08  Aligned_cols=139  Identities=32%  Similarity=0.506  Sum_probs=117.6

Q ss_pred             CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|+++.++.. +..+++|++|++++|+++.++. .|..+++|++|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  112 (208)
T 2o6s_A           33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL  112 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC
Confidence            46788889877654 6889999999999999998864 57889999999999999998865 468899999999999999


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHH
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRR  143 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~  143 (167)
                      +.++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+.    .+.++.+.....
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n  175 (208)
T 2o6s_A          113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWIN  175 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHH
T ss_pred             cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHH
Confidence            88865 478899999999999999999887788999999999999988764    445666665554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=7.6e-19  Score=130.90  Aligned_cols=123  Identities=29%  Similarity=0.410  Sum_probs=63.1

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCC----------------
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY----------------   65 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~----------------   65 (167)
                      +++++.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|+.+..++                
T Consensus        87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~  166 (328)
T 4fcg_A           87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL  166 (328)
T ss_dssp             EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred             EccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence            3444444444444444455555555555444444444444445555554444444444444444                


Q ss_pred             -----------------CCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           66 -----------------SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        66 -----------------~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                                       +|+.|++++|.++.+|..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+.
T Consensus       167 p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTC
T ss_pred             ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcch
Confidence                             44444444444444555555555666666666666555554 455556666666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=2.4e-18  Score=123.51  Aligned_cols=126  Identities=30%  Similarity=0.467  Sum_probs=81.4

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+..+++ .+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++
T Consensus        65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            455555554432 3555666666666666666554 345666666666666666666644 3456667777777777776


Q ss_pred             ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+.
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            6654 466677777777777777777665567777777777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=1.9e-18  Score=122.00  Aligned_cols=126  Identities=25%  Similarity=0.394  Sum_probs=111.8

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.++++++.+|..+.  +.++.|++++|.++.++. .|..+++|+.|++++|.++.+ |..|..+++|++|++++|.++.
T Consensus        17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           17 DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             ECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred             EcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence            567788888887654  689999999999999864 789999999999999999988 6689999999999999999999


Q ss_pred             cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      +|. .+..+++|++|++++|.+..++...+..+++|+.|++++|.++....
T Consensus        95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            875 46789999999999999999988779999999999999999985543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=4.2e-18  Score=122.29  Aligned_cols=128  Identities=29%  Similarity=0.400  Sum_probs=113.8

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+..++ ..+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence            478899999774 46899999999999999999875 568999999999999999998865 678999999999999999


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      +.++. .+..+++|++|++++|.+..++...++.+++|+.|++++|.+....
T Consensus       120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            98865 4688999999999999999999877899999999999999988543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.77  E-value=2.3e-18  Score=116.46  Aligned_cols=123  Identities=21%  Similarity=0.230  Sum_probs=82.1

Q ss_pred             cccCCCCC--CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus        30 ~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  108 (168)
T 2ell_A           30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK  108 (168)
T ss_dssp             ECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred             ECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence            55666666  5666666677777777777776666 556666777777777777765 4555555777777777777776


Q ss_pred             ccc--hhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEcccCCCC
Q 031005           79 ELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 ~l~--~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .++  ..+..+++|++|++++|.+..++.   ..+..+++|+.+++++|.+.
T Consensus       109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            654  456666777777777777766655   44666777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=1.7e-18  Score=119.75  Aligned_cols=126  Identities=24%  Similarity=0.413  Sum_probs=111.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc--cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      +++++++++.+|..+.  ..+++|++++|.++.++.  .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+
T Consensus        13 l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            4678899999987654  389999999999999875  389999999999999999988 66899999999999999999


Q ss_pred             Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      +.++ ..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            9775 45888999999999999998876666899999999999999999764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=3.6e-18  Score=125.24  Aligned_cols=109  Identities=33%  Similarity=0.444  Sum_probs=64.3

Q ss_pred             CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEE
Q 031005           17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLC   94 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~   94 (167)
                      .+++|++|++++|+++.+|..+..+++|+.|++++|.++.++ ..|..+++|++|++++|.++.+|. .+..+++|+.|+
T Consensus        75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            344444444445555555555555566666666666666554 345566666666666666665543 345566666666


Q ss_pred             ccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           95 LNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +++|.+..++..++..+++|+.|++++|.++
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            6666666666655566666666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=7.9e-18  Score=122.07  Aligned_cols=124  Identities=31%  Similarity=0.492  Sum_probs=58.5

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.++.++. .+..+++|++|++++|.++.++. .|..+++|++|++++|.+..+++ .+..+++|++|++++|.++
T Consensus        43 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  122 (270)
T 2o6q_A           43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK  122 (270)
T ss_dssp             ECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred             ECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence            445555554433 35555555555555555555543 23455555555555555554433 3344455555555555444


Q ss_pred             ccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           79 ELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 ~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .++ ..+..+++|++|++++|.+..++...+..+++|+.|++++|.+.
T Consensus       123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            332 22334444444444444444444333344444444444444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.75  E-value=4.7e-18  Score=126.63  Aligned_cols=124  Identities=27%  Similarity=0.359  Sum_probs=79.8

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCc-ccccccc---------CCCCCcEEEeeCCCCCccchhhccCCCCCeEE
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIG---------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ   71 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---------~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~   71 (167)
                      ++++|.+..+|..+..+++|++|++++|.+. .+|..+.         .+++|+.|++++|.++.+|+.+..+++|+.|+
T Consensus       133 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK  212 (328)
T ss_dssp             EEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred             ECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence            4556666666666666666666666664433 3444332         25666666666666666666777777777777


Q ss_pred             cCCCcCCccchhHhcCCCcCEEEccCCcC-CCCchHHhhCCCCCceEEcccCCCCh
Q 031005           72 ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        72 l~~~~~~~l~~~~~~~~~l~~l~l~~n~l-~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +++|.+..+|..+..+++|++|++++|.+ +.+|.. +..+++|+.|++++|.+..
T Consensus       213 L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             EESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCC
T ss_pred             ccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchh
Confidence            77777777776677777777777777665 344433 5667777777777766553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.3e-17  Score=120.89  Aligned_cols=127  Identities=31%  Similarity=0.485  Sum_probs=82.1

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+..++. .+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+|+ .+..+++|+.|++++|.++
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            344555554433 2355555666666666655543 345566666666666666666644 3566677777777777776


Q ss_pred             ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .++. .+..+++|++|++++|.+..++..++..+++|+.+++++|++.+..
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            6643 4666777788888888777777766777778888888888877653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=118.20  Aligned_cols=130  Identities=20%  Similarity=0.282  Sum_probs=111.6

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc--ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      ++++++.++.+|..+.  ..+++|++++|.++.++  ..|..+++|+.|++++|.++.+++ .|..+++|++|++++|.+
T Consensus        16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            4678888999987553  45789999999999874  358999999999999999998865 789999999999999999


Q ss_pred             Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccc
Q 031005           78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM  132 (167)
Q Consensus        78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  132 (167)
                      +.++ ..+..+++|++|++++|.+..+++..+..+++|+.|++++|.++......+
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence            9885 458889999999999999998877778999999999999999986543333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=4.2e-17  Score=118.40  Aligned_cols=139  Identities=32%  Similarity=0.520  Sum_probs=99.0

Q ss_pred             CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.++.. +..+++|++|++++|+++.+++ .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.+
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence            35667777766443 5677777777777777777653 46777778888888887777654 456777888888888877


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHH
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRR  143 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~  143 (167)
                      +.++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+.    .+.++.+..+..
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n  232 (272)
T 3rfs_A          170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWIN  232 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHH
T ss_pred             CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHH
Confidence            76643 456777888888888888777776677788888888888887754    335565555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=5.5e-18  Score=112.44  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=81.0

Q ss_pred             CCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc-cchhHhcCCCcCEE
Q 031005           17 QLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-LPASICNLIHLKSL   93 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~-l~~~~~~~~~l~~l   93 (167)
                      ..++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++. +|..+..+++|+++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3466778888888877  5777777778888888888877766 667777788888888887776 66666667788888


Q ss_pred             EccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005           94 CLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        94 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ++++|.+..++. ..+..+++|+.+++++|+++.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            888888776642 346777788888888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=9.5e-18  Score=133.66  Aligned_cols=132  Identities=21%  Similarity=0.251  Sum_probs=105.0

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |+|++|.|+.+| .+|..+++|++|++++|+++.++ ..|..+++|++|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            578888888775 46888889999999999888876 468888899999999998888865 578888899999999888


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCCCc-hHHhhCCCCCceEEcccCCCChhhhccc
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQQM  132 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~  132 (167)
                      +.++. .++.+++|++|++++|.+..++ +..++.++.|+.|++++|.++......+
T Consensus       137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence            87754 5788888999999998886542 2347788889999999988875544333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=2.1e-17  Score=121.23  Aligned_cols=127  Identities=32%  Similarity=0.391  Sum_probs=114.0

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      |++++|++..+|..+..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+|+ .+..+++|+.|++++|.++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            47888999999988899999999999999999986 678999999999999999998866 5678999999999999999


Q ss_pred             ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .+|. .+..+++|++|++++|.+..+|..+ ...+.|+.+++++|++.+..
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBCCSG
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCccCcC
Confidence            9875 4577999999999999999999874 56779999999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=1.9e-17  Score=120.20  Aligned_cols=127  Identities=28%  Similarity=0.449  Sum_probs=99.0

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      |++++|.+..++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++ .+..+++|++|++++|.++
T Consensus        68 L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  146 (272)
T 3rfs_A           68 LALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ  146 (272)
T ss_dssp             EECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC
Confidence            356777777654 57788888888888888887654 46788888888888888887755 4677888888888888887


Q ss_pred             ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .++. .+..+++|++|++++|.+..++...++.+++|+.|++++|.++...
T Consensus       147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            7754 4577888888888888888887776788888888888888887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=3.5e-17  Score=111.56  Aligned_cols=125  Identities=29%  Similarity=0.461  Sum_probs=110.0

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +++++++..+|..+  .+++++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.
T Consensus        13 ~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   90 (177)
T 2o6r_A           13 RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS   90 (177)
T ss_dssp             ECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence            56778888888644  4789999999999999864 57899999999999999998866 46899999999999999998


Q ss_pred             cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++. .+..+++|++|++++|.+..++..++..+++|+.+++++|++.+..
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            865 4688999999999999999999987889999999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=2.2e-17  Score=117.15  Aligned_cols=124  Identities=27%  Similarity=0.377  Sum_probs=108.8

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.+++++..+|..+.  +++++|++++|.++.+ |..|..+++|+.|++++|.+..+|+ .+..+++|+.|++++|.++.
T Consensus        25 ~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           25 DCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             ECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence            456777888887543  8899999999999987 5778999999999999999999875 56899999999999999998


Q ss_pred             cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++. .+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+....
T Consensus       103 l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCC
T ss_pred             cChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccC
Confidence            864 568899999999999999999887 689999999999999998543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.73  E-value=1.4e-17  Score=113.55  Aligned_cols=124  Identities=21%  Similarity=0.310  Sum_probs=93.8

Q ss_pred             CcccCCCCCCCchhhhCC-CCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQL-VRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l-~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~~   78 (167)
                      |++++|+++.++. +..+ ++|++|++++|.++.+ ..+..+++|+.|++++|.++.+|+. +..+++|+.|++++|.++
T Consensus        24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence            4677777777754 4444 4888888888888877 6677788888888888888877654 377888888888888887


Q ss_pred             ccch--hHhcCCCcCEEEccCCcCCCCchH---HhhCCCCCceEEcccCCCCh
Q 031005           79 ELPA--SICNLIHLKSLCLNNNNIGQIPAN---LLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        79 ~l~~--~~~~~~~l~~l~l~~n~l~~~~~~---~~~~~~~L~~l~l~~n~~~~  126 (167)
                      .+|.  .+..+++|+++++++|.+..++..   ++..+++|+.++++.|....
T Consensus       102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7765  677788888888888888777664   56778888888888777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=5.1e-17  Score=112.65  Aligned_cols=123  Identities=21%  Similarity=0.232  Sum_probs=105.0

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcCCc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      |+++++.+..+| .+..+++|++|++++|.++.++ .+..+++|+.|++++|.++. .++.+..+++|+.|++++|.++.
T Consensus        49 L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           49 ITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             EEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             EeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            467888888887 6889999999999999777664 67889999999999999985 46778889999999999999875


Q ss_pred             -cchhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           80 -LPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        80 -l~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                       .+..+..+++|++|++++|. ++.++.  +..+++|+.|++++|.++..
T Consensus       127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          127 SILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             GGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC
T ss_pred             HhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh
Confidence             56778889999999999998 888874  78899999999999988753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1.9e-17  Score=124.72  Aligned_cols=127  Identities=26%  Similarity=0.358  Sum_probs=100.1

Q ss_pred             CcccCCCCCCCchh-hh-CCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSLPDE-LG-QLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l~~~-~~-~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|+|+.++.. +. .+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+++ .|..+++|+.|++++|.
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence            46778888876544 44 7888888888888888876 468888888888888888887755 57788888888888888


Q ss_pred             CCcc-chhHhcCCCcCEEEccCCcCCCCchHHh---hCCCCCceEEcccCCCChh
Q 031005           77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLL---KDCKALQNISLHNNPISMD  127 (167)
Q Consensus        77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~  127 (167)
                      +..+ +..+..+++|++|++++|.+..+|..++   ..+++|+.|++++|.++..
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8766 5677888888888888888888888766   5688888888888888753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=4.8e-17  Score=118.64  Aligned_cols=126  Identities=32%  Similarity=0.475  Sum_probs=94.1

Q ss_pred             cccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            5566666655 4456677777777777777776653 46777777777777777777654 4677777888888888776


Q ss_pred             cc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           79 EL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        79 ~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .+ |..+..+++|+.|++++|.+..++...+..+++|+.+++++|++.++
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            55 66777788888888888888888877788888888888888888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=4.2e-17  Score=118.94  Aligned_cols=125  Identities=29%  Similarity=0.418  Sum_probs=76.4

Q ss_pred             cccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccCCCCCeEEcCCCcC
Q 031005            2 TLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         2 ~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      +++++.++.++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..+ +..+..+++|++|++++|.+
T Consensus        38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l  117 (285)
T 1ozn_A           38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL  117 (285)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC
Confidence            45566666554 3456666677777776666665 4556666666666666665 5555 34556666666666666666


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +.+ +..+..+++|++|++++|.+..++...++.+++|+.|++++|.++.
T Consensus       118 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            554 3445556666666666666665555545566666666666665553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=2.5e-17  Score=134.24  Aligned_cols=126  Identities=20%  Similarity=0.247  Sum_probs=108.0

Q ss_pred             CCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005            7 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN   86 (167)
Q Consensus         7 ~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~   86 (167)
                      .+...+..+..+..|+.|++++|.+..+|..+..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+|..++.
T Consensus       212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred             ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence            33334566888999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             CCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhcccc
Q 031005           87 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQME  133 (167)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  133 (167)
                      +.+|++|++++|.++.+|.. ++.+++|+.|++++|+++......+.
T Consensus       292 l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHh
Confidence            99999999999999999887 89999999999999999976555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=1.5e-16  Score=122.71  Aligned_cols=128  Identities=28%  Similarity=0.385  Sum_probs=114.4

Q ss_pred             CcccCCCCCC-CchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITS-LPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+.. +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI  359 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence            3567777874 466789999999999999999986 56889999999999999999987 56788999999999999999


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      +.+ |..+..+++|++|++++|.+..++...+..+++|+.+++++|++.+..
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            877 678899999999999999999999887899999999999999999763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=4.7e-17  Score=118.14  Aligned_cols=129  Identities=22%  Similarity=0.280  Sum_probs=106.2

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.++. .+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence            4678888887654 6888999999999999998876 47888999999999999998775 5688899999999999988


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhc
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      ..++. .+..+++|++|++++|.+..  +|.. ++.+++|+.|++++|.++.....
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGG
T ss_pred             cccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHH
Confidence            87754 67888899999999999976  4444 78899999999999988865333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.9e-16  Score=109.76  Aligned_cols=122  Identities=21%  Similarity=0.315  Sum_probs=105.5

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCc-C
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNL-I   77 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~-~   77 (167)
                      |++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|+.|++++|.++. .++.+..+++|++|++++|. +
T Consensus        71 L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A           71 LTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             EEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             EEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence            467788776664 68899999999999999997 67889999999999999999995 56788999999999999998 8


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +.++ .+..+++|++|++++|.+..++.  +..+++|+.+++++|++..
T Consensus       150 ~~~~-~l~~l~~L~~L~l~~n~i~~~~~--l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 TDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCG-GGGGCSSCCEEECTTBCCCCCTT--GGGCSSCCEEEECBC----
T ss_pred             cccH-hhcCCCCCCEEECCCCCCcChHH--hccCCCCCEEEeeCcccCC
Confidence            8887 68899999999999999988873  8899999999999999753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=2.9e-17  Score=116.97  Aligned_cols=125  Identities=16%  Similarity=0.258  Sum_probs=103.7

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCc-Cccccc-cccCCCCCcEEEeeC-CCCCccch-hhccCCCCCeEEcCCC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNM-LTCLPE-TIGSLRNLVLLNVSN-NKLKSLPE-SIGSCYSLEELQANDN   75 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~-l~~l~~-~~~~l~~L~~l~l~~-n~~~~~~~-~~~~l~~L~~l~l~~~   75 (167)
                      |++++|+++.++. .+..+++|++|++++|. ++.+++ .|..+++|+.|++++ |.++.+++ .|..+++|++|++++|
T Consensus        36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            4678888887765 68889999999999997 888764 788899999999998 89988864 6788899999999999


Q ss_pred             cCCccchhHhcCCCcC---EEEccCC-cCCCCchHHhhCCCCCc-eEEcccCCCCh
Q 031005           76 LIGELPASICNLIHLK---SLCLNNN-NIGQIPANLLKDCKALQ-NISLHNNPISM  126 (167)
Q Consensus        76 ~~~~l~~~~~~~~~l~---~l~l~~n-~l~~~~~~~~~~~~~L~-~l~l~~n~~~~  126 (167)
                      .++.+|. +..+++++   ++++++| .+..++...+..+++|+ .+++++|.++.
T Consensus       116 ~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          116 GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            8888876 77777777   8888888 88888777778888888 88888888774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.2e-16  Score=111.43  Aligned_cols=125  Identities=27%  Similarity=0.392  Sum_probs=108.2

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.+++++..+|..+  .+++++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|++|++++|.++.
T Consensus        13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           13 ECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             ECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence            34566777787644  4689999999999998864 57899999999999999998866 46889999999999999998


Q ss_pred             cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++. .+..+++|++|++++|.+..++...+..+++|+.|++++|.++...
T Consensus        91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            864 4688999999999999999998887899999999999999988543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.6e-16  Score=114.94  Aligned_cols=120  Identities=27%  Similarity=0.340  Sum_probs=85.3

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|+++.++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+|+...  ++|+.|++++|.++.+
T Consensus        46 L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~  121 (263)
T 1xeu_A           46 FNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT  121 (263)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS
T ss_pred             EECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCC
Confidence            356777777776 57777888888888888877766 7777788888888887777654322  6777777777777666


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      + .+..+++|+.|++++|.++.++.  +..+++|+.|++++|.++..
T Consensus       122 ~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          122 D-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             h-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcCcch
Confidence            4 36667777777777777766653  66777777777777777643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=7.3e-17  Score=121.59  Aligned_cols=128  Identities=24%  Similarity=0.350  Sum_probs=112.6

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|+|..++ ..|..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+ +..|..+++|+.|++++|.+
T Consensus        69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            478899999875 46899999999999999999986 4689999999999999999988 55889999999999999999


Q ss_pred             CccchhH----hcCCCcCEEEccCCcCCCCchHHhhCCCC--CceEEcccCCCChhh
Q 031005           78 GELPASI----CNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l~~~~----~~~~~l~~l~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~  128 (167)
                      +.+|..+    ..+++|++|++++|.+..++...+..++.  ++.+++++|++.++.
T Consensus       149 ~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred             CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence            9997654    56899999999999999999877888887  489999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.68  E-value=8.7e-17  Score=118.99  Aligned_cols=125  Identities=25%  Similarity=0.434  Sum_probs=97.6

Q ss_pred             CcccCCCCC---CCchhhhCCCCCCEEEeeC-CcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCC
Q 031005            1 MTLDGNRIT---SLPDELGQLVRLERLSILG-NMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQAND   74 (167)
Q Consensus         1 L~l~~~~i~---~l~~~~~~l~~L~~L~l~~-n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~   74 (167)
                      |+++++.+.   .+|..+..+++|++|++++ |.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            456777777   4788888888888888884 77774 6778888888888888888887 5677788888888888888


Q ss_pred             CcCC-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCC-CCceEEcccCCCCh
Q 031005           75 NLIG-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCK-ALQNISLHNNPISM  126 (167)
Q Consensus        75 ~~~~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~-~L~~l~l~~n~~~~  126 (167)
                      |.+. .+|..+..+++|++|++++|.+. .+|.. +..++ .|+.+++++|.+..
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE
T ss_pred             CccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec
Confidence            8886 56777888888888888888885 66665 56665 78888888887763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.68  E-value=1.3e-16  Score=121.04  Aligned_cols=135  Identities=20%  Similarity=0.299  Sum_probs=112.9

Q ss_pred             cccCCCCCCCchh-hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++.++.+|.. +..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..+++ .+..+++|++|++++|.++
T Consensus        51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  130 (390)
T 3o6n_A           51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  130 (390)
T ss_dssp             EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence            5667777778765 678999999999999999876 578999999999999999998854 5788999999999999999


Q ss_pred             ccchh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005           79 ELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE  136 (167)
Q Consensus        79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~  136 (167)
                      .+|.. +..+++|++|++++|.+..+++..+..+++|+.|++++|.++......++.++
T Consensus       131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~  189 (390)
T 3o6n_A          131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  189 (390)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred             cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccc
Confidence            88765 57889999999999999888777788999999999999998866555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=3.7e-17  Score=122.64  Aligned_cols=127  Identities=24%  Similarity=0.295  Sum_probs=87.9

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|+++.++. .+..+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++. +..+++|++|++++|.+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence            3566677776644 5677777777777777777653 4577777777777777777777554 66777777777777777


Q ss_pred             Cccch--hHhcCCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           78 GELPA--SICNLIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        78 ~~l~~--~~~~~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.+|.  .+..+++|++|++++| .+..++...+..+++|+.+++++|.+...
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            76654  5666777777777777 45666555566777777777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=2.8e-17  Score=117.02  Aligned_cols=123  Identities=21%  Similarity=0.363  Sum_probs=76.3

Q ss_pred             CcccCCC-CCCCch-hhhCCCCCCEEEeeC-CcCcccc-ccccCCCCCcEEEeeCCCCCccchhhccCCCCC---eEEcC
Q 031005            1 MTLDGNR-ITSLPD-ELGQLVRLERLSILG-NMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLE---ELQAN   73 (167)
Q Consensus         1 L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~---~l~l~   73 (167)
                      |++++|. ++.+++ .|..+++|++|++++ |.++.++ ..|..+++|+.|++++|.++.+|+ +..+++|+   .++++
T Consensus        60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~  138 (239)
T 2xwt_C           60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT  138 (239)
T ss_dssp             EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE
T ss_pred             EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC
Confidence            3566665 666644 566777777777776 7777765 456677777777777776666654 55555555   66666


Q ss_pred             CC-cCCccch-hHhcCCCcC-EEEccCCcCCCCchHHhhCCCCCceEEcccCC-CC
Q 031005           74 DN-LIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNISLHNNP-IS  125 (167)
Q Consensus        74 ~~-~~~~l~~-~~~~~~~l~-~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~  125 (167)
                      +| .++.++. .+..+++++ .+++++|.+..++..++.. ++|+.+++++|+ ++
T Consensus       139 ~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT  193 (239)
T ss_dssp             SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC
T ss_pred             CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc
Confidence            66 5655543 355556666 6666666665555544444 556666666663 54

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=1.6e-16  Score=126.56  Aligned_cols=135  Identities=24%  Similarity=0.311  Sum_probs=111.0

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+++ .|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            4678888886644 788999999999999999987 46788999999999999999887 66888999999999999999


Q ss_pred             Cccc-hhHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005           78 GELP-ASICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQQMEGFE  136 (167)
Q Consensus        78 ~~l~-~~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~  136 (167)
                      ..++ ..++.+++|++|++++|.+..  +|.. ++.+++|+.|++++|.+.......+..+.
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  177 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLR  177 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred             ccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhh
Confidence            8775 678889999999999999864  5554 78999999999999988865444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.7e-16  Score=124.88  Aligned_cols=106  Identities=29%  Similarity=0.428  Sum_probs=90.9

Q ss_pred             CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCc
Q 031005           20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN   99 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~   99 (167)
                      .|+.|++++|.++.+|. +..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+| .++.+++|++|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58889999999988876 88888999999999999988888888999999999999988887 78888999999999999


Q ss_pred             CCCCc-hHHhhCCCCCceEEcccCCCChh
Q 031005          100 IGQIP-ANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus       100 l~~~~-~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +..++ +..+..+++|+.|++++|+++..
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            98773 33478889999999999988754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.5e-16  Score=126.79  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=105.9

Q ss_pred             CCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-
Q 031005            6 NRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-   82 (167)
Q Consensus         6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~-   82 (167)
                      .+++++|..+.  +.++.|++++|+|+.++ ..|..+++|++|++++|.++.+++ +|..+++|++|++++|.++.+|. 
T Consensus        41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            35667876542  47999999999999987 579999999999999999999965 68999999999999999998874 


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      .|..+++|++|++++|.+..++...++.+++|+.|++++|.+..
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence            68899999999999999999988778999999999999999863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=2.9e-17  Score=120.86  Aligned_cols=127  Identities=19%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             cccCCCCCCCch--hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCc--cchhhccCCCCCeEEcCCCc
Q 031005            2 TLDGNRITSLPD--ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNL   76 (167)
Q Consensus         2 ~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~l~~L~~l~l~~~~   76 (167)
                      ++++|.+..++.  .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..  +|..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            344444444432  345555555556555555543 3445556666666666666553  35556666666666666666


Q ss_pred             CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++.+ |..+..+++|++|++++|.+..++...+..+++|+.|++++|.+....
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            6655 455666667777777777776665544666677777777777666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=1.8e-16  Score=116.56  Aligned_cols=127  Identities=25%  Similarity=0.294  Sum_probs=105.1

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|.+..+ +..+..+++|++|++++|.++.  +|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus       131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            46777888744 5667889999999999999875  678888999999999999999977 5578889999999999999


Q ss_pred             CCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCC-CCceEEcccCCCChh
Q 031005           77 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLHNNPISMD  127 (167)
Q Consensus        77 ~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~  127 (167)
                      ++.++ ..+..+++|++|++++|.+...+...+..++ +|+.+++++|++.+.
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            98775 4678889999999999999766655567774 899999999999865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=1e-15  Score=113.06  Aligned_cols=117  Identities=23%  Similarity=0.420  Sum_probs=55.6

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      +++|.+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++.
T Consensus        70 L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  146 (308)
T 1h6u_A           70 LKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP  146 (308)
T ss_dssp             CCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             ccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc
Confidence            33444443333 344444444444444444332 23444444444444444444432 4444455555555554444433


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       +..+++|++|++++|.+..++.  +..+++|+.|++++|.++
T Consensus       147 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          147 -LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             -ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence             4455555555555555555544  455555556665555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=1.5e-15  Score=112.16  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=59.0

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      ++++.+..++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.
T Consensus        48 l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~  124 (308)
T 1h6u_A           48 AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP  124 (308)
T ss_dssp             CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG
T ss_pred             eeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh
Confidence            4444444443 34455555555555555555444 455555555555555555442 34445555555555555544432


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       +..+++|++|++++|.+..++.  +..+++|+.|++++|.++
T Consensus       125 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             -hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence             4445555555555555544444  445555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.66  E-value=4.2e-16  Score=122.21  Aligned_cols=130  Identities=20%  Similarity=0.242  Sum_probs=105.6

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++++++.+|..+.  +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++
T Consensus         5 l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             EECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            4678888888887665  78999999999988875 5788889999999999998877 567888899999999999888


Q ss_pred             ccchhHhcCCCcCEEEccCCcCCCC--chHHhhCCCCCceEEcccCCCChhhhccccch
Q 031005           79 ELPASICNLIHLKSLCLNNNNIGQI--PANLLKDCKALQNISLHNNPISMDQFQQMEGF  135 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l~~n~l~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l  135 (167)
                      .+|..  .+++|++|++++|.+..+  |. .++.+++|+.|++++|.+....+..+..+
T Consensus        83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L  138 (520)
T 2z7x_B           83 KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHL  138 (520)
T ss_dssp             EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTS
T ss_pred             ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchhhccccccc
Confidence            88765  788899999999988654  34 37888899999999998887655555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=1.7e-15  Score=111.02  Aligned_cols=117  Identities=29%  Similarity=0.425  Sum_probs=54.6

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      +++|+++.+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++.+ .
T Consensus        75 L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~  150 (291)
T 1h6t_A           75 LNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T  150 (291)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-G
T ss_pred             ccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-h
Confidence            34444444333 4444444444444444444322 44444444444444444443 2344444455555555544444 2


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .+..+++|++|++++|.+..++.  +..+++|+.|++++|.++
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            34445555555555555544443  445555555555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.66  E-value=4.3e-16  Score=115.34  Aligned_cols=146  Identities=20%  Similarity=0.236  Sum_probs=117.0

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccc-cCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~-~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+++ .+..+++|++|++++|.++.++ ..+ ..+++|+.|++++|.++.++.. ..+++|++|++++|.+
T Consensus       125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcC
Confidence            4677788887644 6788899999999999998753 445 4789999999999999987543 3588999999999999


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh----hccccchHHHHHHHHHhhhh
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ----FQQMEGFEEFEARRRKKFDK  148 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~l~~l~~~~~~~~~~  148 (167)
                      +.+|..+..+++|++|++++|.+..+|.. +..+++|+.+++++|++.+..    +..+..++.+.......+..
T Consensus       204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          204 AFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             CEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             CcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            99988899999999999999999988876 788999999999999999432    33455566666665555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=1e-15  Score=111.13  Aligned_cols=127  Identities=33%  Similarity=0.500  Sum_probs=95.3

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCc--cchhhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~--~~~~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..  +|..+..+++|+.|++++|.
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            456777777554 557777888888888887777653 57777788888888887775  46677777778888887777


Q ss_pred             CCccc-hh---------------------------HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           77 IGELP-AS---------------------------ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        77 ~~~l~-~~---------------------------~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      ++.++ ..                           .....+|+.|++++|.++.++..++..+++|+.+++++|++.+.
T Consensus       161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            66442 11                           12223688899999999989888788999999999999999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.66  E-value=6.4e-17  Score=119.72  Aligned_cols=122  Identities=25%  Similarity=0.457  Sum_probs=78.3

Q ss_pred             cccC-CCCC-CCchhhhCCCCCCEEEeeCCcCc-cccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005            2 TLDG-NRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         2 ~l~~-~~i~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      ++++ |.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            4452 5555 56777777777777777777776 46667777777777777777777 4566677777777777777777


Q ss_pred             C-ccchhHhcCC-CcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005           78 G-ELPASICNLI-HLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        78 ~-~l~~~~~~~~-~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      + .+|..+..+. +|+++++++|.+. .+|.. +..+. |+.|++++|.++
T Consensus       162 ~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             EEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE
T ss_pred             cCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc
Confidence            5 5666666665 6666666666663 33332 34443 555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=2e-17  Score=134.75  Aligned_cols=126  Identities=30%  Similarity=0.428  Sum_probs=107.3

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |+|++|.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|+.++.+++|++|++++|.++.+
T Consensus       229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l  308 (727)
T 4b8c_D          229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL  308 (727)
T ss_dssp             EECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred             EECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence            57899999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCC-CCceEEcccCCCCh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLHNNPISM  126 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~  126 (167)
                      |..++.+++|++|++++|.+...++..+..+. .+..+++++|.++.
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence            98899999999999999999765554443321 11224455555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=1.7e-15  Score=111.02  Aligned_cols=121  Identities=30%  Similarity=0.409  Sum_probs=107.1

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |+++++.+..++. +..+++|++|++++|+++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+
T Consensus        51 L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~  127 (291)
T 1h6t_A           51 IIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI  127 (291)
T ss_dssp             EECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC
T ss_pred             EEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC
Confidence            4677888888854 8889999999999999999877 8999999999999999998754 88999999999999999887


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                       ..+..+++|++|++++|.+..++.  +..+++|+.|++++|.++..
T Consensus       128 -~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          128 -NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             -GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred             -hhhcCCCCCCEEEccCCcCCcchh--hccCCCCCEEEccCCccccc
Confidence             457889999999999999988843  88999999999999999854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.66  E-value=7.1e-16  Score=122.17  Aligned_cols=131  Identities=21%  Similarity=0.287  Sum_probs=105.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++++++.+|..+.  ++++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..|..+++|++|++++|.++
T Consensus        36 l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           36 VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             EECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             EEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence            3677888888887653  78899999999998876 5788899999999999998877 557888899999999999988


Q ss_pred             ccchhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChhhhccccch
Q 031005           79 ELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQFQQMEGF  135 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l  135 (167)
                      .+|..  .+++|++|++++|.+..++. ..++.+++|+.|++++|.+....+..+..+
T Consensus       114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L  169 (562)
T 3a79_B          114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL  169 (562)
T ss_dssp             EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS
T ss_pred             ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc
Confidence            88766  78889999999999877652 447888999999999998876555444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=5.2e-16  Score=112.27  Aligned_cols=121  Identities=27%  Similarity=0.275  Sum_probs=107.5

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|+++.+++ +..+++|++|++++|+++.++....  ++|+.|++++|.++.++ .+..+++|+.|++++|.++.+
T Consensus        68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           68 LHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             EECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred             EECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC
Confidence            5788999998877 8999999999999999999875433  89999999999999875 588999999999999999988


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      + .+..+++|+.|++++|.+..+.  .+..+++|+.+++++|++....
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~~--~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBCT--TSTTCCCCCEEEEEEEEEECCC
T ss_pred             h-HHccCCCCCEEECCCCcCcchH--HhccCCCCCEEeCCCCcccCCc
Confidence            6 6888999999999999998873  3789999999999999987653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=3.9e-16  Score=120.33  Aligned_cols=41  Identities=29%  Similarity=0.428  Sum_probs=16.4

Q ss_pred             hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCC
Q 031005           15 LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLK   55 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~   55 (167)
                      |..+++|++|++++|.++.++. .|..+++|+.|++++|.+.
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            3334444444444444443332 2333444444444444333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=4.3e-16  Score=120.47  Aligned_cols=81  Identities=26%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.|+.+ +..|..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence            35666777654 455677777777777777777654 566677777777777777776654 356667777777777666


Q ss_pred             Cccc
Q 031005           78 GELP   81 (167)
Q Consensus        78 ~~l~   81 (167)
                      +.++
T Consensus       160 ~~~~  163 (452)
T 3zyi_A          160 ESIP  163 (452)
T ss_dssp             CEEC
T ss_pred             ceeC
Confidence            5443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=1.7e-16  Score=123.22  Aligned_cols=125  Identities=27%  Similarity=0.416  Sum_probs=71.0

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+ +..|..+++|++|++++|.++.+ |..|..+++|+.|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence            35666666655 34566677777777777766664 4566666677777777766666654 345666666666666665


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ..+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+.
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            543 334444455555555555444433333444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.65  E-value=4.3e-16  Score=121.02  Aligned_cols=129  Identities=26%  Similarity=0.372  Sum_probs=112.5

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+..+ |..|..+++|++|++++|.++.+|. .|..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus        61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A           61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred             EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence            46788888866 7789999999999999999999875 578999999999999999977 55788999999999999999


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      ..+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++|.+.....
T Consensus       141 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  193 (477)
T 2id5_A          141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD  193 (477)
T ss_dssp             CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred             ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence            866 4578888999999999999999998888999999999999998875433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.65  E-value=5.9e-16  Score=119.33  Aligned_cols=97  Identities=25%  Similarity=0.386  Sum_probs=76.7

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|++..+ +..|..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            46888899876 467899999999999999999875 678999999999999999998866 688899999999999988


Q ss_pred             Cccch-hHhcCCCcCEEEccC
Q 031005           78 GELPA-SICNLIHLKSLCLNN   97 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~   97 (167)
                      +.++. .+..+++|++|++++
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCC
T ss_pred             cccCHHHhhhCcccCEeCCCC
Confidence            76543 333333444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=5e-16  Score=120.09  Aligned_cols=57  Identities=30%  Similarity=0.464  Sum_probs=32.8

Q ss_pred             cccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccc
Q 031005            2 TLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP   58 (167)
Q Consensus         2 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~   58 (167)
                      ++++|.+..+ +..|..+++|++|++++|.++.++. .|..+++|+.|++++|.++.++
T Consensus       105 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (452)
T 3zyi_A          105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP  163 (452)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred             ECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence            4556666644 3445666666666666666665543 3555666666666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=5e-16  Score=123.98  Aligned_cols=135  Identities=20%  Similarity=0.299  Sum_probs=112.1

Q ss_pred             cccCCCCCCCchh-hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++.+..+|+. +..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .++.+++|+.|++++|.++
T Consensus        57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            4566777777665 678999999999999999875 588999999999999999998855 5688999999999999998


Q ss_pred             ccchh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005           79 ELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE  136 (167)
Q Consensus        79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~  136 (167)
                      .+|.. +..+++|++|++++|.+..+++..++.+++|+.|++++|.+.......++.+.
T Consensus       137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  195 (597)
T 3oja_B          137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  195 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred             CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence            88764 57889999999999999888776688999999999999998866555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=9.7e-16  Score=116.28  Aligned_cols=124  Identities=22%  Similarity=0.222  Sum_probs=104.6

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      ++++|.++.. +.+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+
T Consensus       232 ~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          232 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec
Confidence            4566666655 4578889999999999998875 6788889999999999999998877777889999999999999888


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      |..+..+++|+.|++++|.+..++   +..+++|+.+++++|++.+...
T Consensus       311 ~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          311 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence            888888899999999999998875   5678899999999999987643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6e-16  Score=104.50  Aligned_cols=111  Identities=21%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             hCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc-cchhHhcCCCcCE
Q 031005           16 GQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-LPASICNLIHLKS   92 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~-l~~~~~~~~~l~~   92 (167)
                      ...++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.+.. +|..+..+++|++
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            34578999999999999  7888889999999999999999988 778899999999999999987 7788888999999


Q ss_pred             EEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           93 LCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        93 l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      |++++|.+..++. ..+..+++|+.|++++|+++..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            9999999998864 4588999999999999998754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=1.5e-15  Score=119.72  Aligned_cols=126  Identities=24%  Similarity=0.323  Sum_probs=89.5

Q ss_pred             cccCCCCCCCc---hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhh-----------------
Q 031005            2 TLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-----------------   61 (167)
Q Consensus         2 ~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~-----------------   61 (167)
                      ++++|.++.++   ..+..+++|++|++++|+++.+|..+..+++|+.|++++|.++.+|..+                 
T Consensus       367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~  446 (549)
T 2z81_A          367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF  446 (549)
T ss_dssp             ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC
T ss_pred             EccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh
Confidence            45666666554   2356677777777777777777666666666666666666665543322                 


Q ss_pred             -ccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           62 -GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        62 -~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                       ..+++|++|++++|.++.+|. ...+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus       447 ~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          447 SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence             256678888888888877765 456788888888888888777766788888999999999887653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=119.27  Aligned_cols=127  Identities=24%  Similarity=0.362  Sum_probs=84.7

Q ss_pred             cccCCCCCC-CchhhhCCCCCCEEEeeCCcCcc---ccccccCCCCCcEEEeeCCCCCc-cchh-hccC-----------
Q 031005            2 TLDGNRITS-LPDELGQLVRLERLSILGNMLTC---LPETIGSLRNLVLLNVSNNKLKS-LPES-IGSC-----------   64 (167)
Q Consensus         2 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~---l~~~~~~l~~L~~l~l~~n~~~~-~~~~-~~~l-----------   64 (167)
                      ++++|.+.. +|..+..+++|++|++++|+++.   +|..+..+++|+.|++++|.+.. +|.. +..+           
T Consensus       330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence            455555553 44555555555555555555553   23345555555555555555554 4332 2222           


Q ss_pred             -----------CCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           65 -----------YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        65 -----------~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                                 ++|+.|++++|.++.+|..+..+++|+++++++|.+..+|...+..+++|+.+++++|++.++.
T Consensus       410 ~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence                       5677777777777778877778889999999999998888876788899999999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.64  E-value=3.8e-16  Score=124.43  Aligned_cols=127  Identities=20%  Similarity=0.208  Sum_probs=102.4

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+ |..|..+++|++|++++|.++.+ |..|..+++|++|++++|.+..+ |..+..+++|++|++++|.+
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence            46788888866 56788899999999999998875 57788899999999999988876 55788889999999999988


Q ss_pred             Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+...
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence            876 56677888888999988888766332245588888888888888743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=7.4e-16  Score=121.75  Aligned_cols=132  Identities=22%  Similarity=0.281  Sum_probs=108.4

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+ +.+|..+++|++|++++|.++.++ ..|..+++|++|++++|.++.++ ..|..+++|++|++++|.+
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  112 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence            46788888866 446888999999999999998875 57888999999999999998775 5788899999999999998


Q ss_pred             Cccch-hHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhcccc
Q 031005           78 GELPA-SICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQQME  133 (167)
Q Consensus        78 ~~l~~-~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  133 (167)
                      +.++. .++.+++|++|++++|.+..  +|.. ++.+++|+.|++++|.+.......+.
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~  170 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR  170 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred             ccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHcc
Confidence            87754 68888999999999999865  4554 78899999999999988765433333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=4.3e-16  Score=103.21  Aligned_cols=119  Identities=27%  Similarity=0.325  Sum_probs=107.4

Q ss_pred             CcccCCCCC--CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i  100 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI  100 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence            468889998  7888889999999999999999988 778999999999999999997 677777899999999999999


Q ss_pred             Cccc--hhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEcc
Q 031005           78 GELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH  120 (167)
Q Consensus        78 ~~l~--~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~  120 (167)
                      +.++  ..+..+++|+++++++|.+..++.   ..+..+++|+.++++
T Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9875  788999999999999999988876   668999999999876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=1.1e-15  Score=113.67  Aligned_cols=123  Identities=28%  Similarity=0.396  Sum_probs=71.6

Q ss_pred             cccCCCCC---CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005            2 TLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         2 ~l~~~~i~---~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~   77 (167)
                      ++++|.+.   ..+..+..+++|++|++++|.++.+|..+.  ++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            45566664   234556667777777777766666554332  5566666666666654 34555566666666666666


Q ss_pred             Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.++ ..+..+++|++|++++|.+..+|.. +..+++|+.+++++|+++..
T Consensus       229 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          229 SAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             CEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCC
T ss_pred             ceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCcc
Confidence            5443 2455556666666666666655554 45556666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=8e-16  Score=115.34  Aligned_cols=123  Identities=23%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.+++.++.+|..+.  +++++|++++|.++.++. .+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.
T Consensus        37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence            456778888887654  589999999999999875 7899999999999999999884 578999999999999999998


Q ss_pred             cchh-HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCC-CCh
Q 031005           80 LPAS-ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNP-ISM  126 (167)
Q Consensus        80 l~~~-~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~-~~~  126 (167)
                      ++.. +..+++|++|++++|.+..++. ..+..+++|+.|++++|. +..
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence            8765 8889999999999999998887 568899999999999984 554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=2.4e-15  Score=101.99  Aligned_cols=107  Identities=27%  Similarity=0.396  Sum_probs=94.9

Q ss_pred             CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEEccC
Q 031005           20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNN   97 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~l~~   97 (167)
                      ..+.+++++|.++.+|..+.  ++++.|++++|.++.+ |..|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45789999999999987653  7899999999999988 5578899999999999999998865 467899999999999


Q ss_pred             CcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           98 NNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      |.+..++...+..+++|+.|++++|++.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999999887899999999999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=3.1e-16  Score=123.56  Aligned_cols=127  Identities=23%  Similarity=0.272  Sum_probs=98.0

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+ |..+..+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ .+..+++|++|++++|.+
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence            46777777755 556788888888888888888764 567888888888888888887755 478888888888888888


Q ss_pred             Ccc--chhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           78 GEL--PASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        78 ~~l--~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.+  |..++.+++|++|++++|. ++.++...++.+++|+.|++++|.+...
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            743  5567778888888888887 5677665578888888888888887753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=1.9e-15  Score=112.22  Aligned_cols=121  Identities=27%  Similarity=0.432  Sum_probs=60.7

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      ++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++.
T Consensus        58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~  135 (330)
T 1xku_A           58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK  135 (330)
T ss_dssp             ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred             ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccc
Confidence            455566665543 456666666666666666654 4556666666666666666655544332  345555555554444


Q ss_pred             cc-hhHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCC
Q 031005           80 LP-ASICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPI  124 (167)
Q Consensus        80 l~-~~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~  124 (167)
                      ++ ..+..+++|+++++++|.+..  +....+..+++|+.+++++|.+
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            32 234444444444444444421  2222234444444444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.62  E-value=4.1e-15  Score=101.26  Aligned_cols=106  Identities=26%  Similarity=0.377  Sum_probs=94.8

Q ss_pred             CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCccchh-HhcCCCcCEEEccCC
Q 031005           21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNN   98 (167)
Q Consensus        21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~l~~~-~~~~~~l~~l~l~~n   98 (167)
                      -+.+++++++++.+|..+.  ++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4789999999999987664  8899999999999988 55788999999999999999988764 578999999999999


Q ss_pred             cCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           99 NIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        99 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .+..++...+..+++|+.|++++|++.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999999887899999999999999999753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=9.4e-16  Score=114.07  Aligned_cols=122  Identities=25%  Similarity=0.406  Sum_probs=80.4

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      ++++|++..+|..+.  ++|++|++++|.++.++ ..+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.
T Consensus       178 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  255 (332)
T 2ft3_A          178 RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR  255 (332)
T ss_dssp             BCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred             ECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence            445555555544332  56667777777776654 556677777777777777776643 56677777777777777777


Q ss_pred             cchhHhcCCCcCEEEccCCcCCCCchHHhhCC------CCCceEEcccCCCC
Q 031005           80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDC------KALQNISLHNNPIS  125 (167)
Q Consensus        80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~------~~L~~l~l~~n~~~  125 (167)
                      +|..+..+++|+++++++|.++.++...+...      ..++.+++++|++.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            77667777777777777777766665544432      45677777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=4.7e-15  Score=118.55  Aligned_cols=106  Identities=28%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC   94 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~   94 (167)
                      +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.+..+ ..+..+++|+.|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~  159 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS  159 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred             hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence            333344444444444433332 233444444444444444433 2234444444444444444443 3344445555555


Q ss_pred             ccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           95 LNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +++|.+..+++  +..+++|+.|++++|.++
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            55555544443  445555555555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.7e-15  Score=117.18  Aligned_cols=126  Identities=20%  Similarity=0.198  Sum_probs=105.9

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-ccccc-CCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.++.+ |..+..+++|++|++++|.++.+ |..+. .+++|+.|++++|.++.+++ ...+++|+.|++++|.+
T Consensus       125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCC
Confidence            46777888765 45678889999999999998874 55664 78899999999999987754 34588999999999999


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      +.+|..+..+++|+.|++++|.+..+|.. +..+++|+.+++++|++.+..
T Consensus       204 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          204 AFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcc
Confidence            98888888999999999999999988876 788899999999999999543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=8.1e-15  Score=109.39  Aligned_cols=109  Identities=27%  Similarity=0.427  Sum_probs=59.2

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC   94 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~   94 (167)
                      +..+++|++|++++|.++.++. +..+++|+.|++++|.++.+ +.+..+++|+.+++++|.++.++ .+..+++|+.++
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~  293 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLF  293 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred             hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEE
Confidence            4445555555555555555443 45555555555555555544 23455555555555555555542 345555566666


Q ss_pred             ccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           95 LNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +++|.+...+...+..+++|+.+++++|+++.
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            66666555544445556666666666665553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=1.7e-15  Score=120.69  Aligned_cols=135  Identities=16%  Similarity=0.269  Sum_probs=114.9

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.++++++.+|..+.  +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.
T Consensus        17 ~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           17 QCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS   94 (606)
T ss_dssp             ECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred             EccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence            456677888887654  78999999999999976 5899999999999999999988 5578999999999999999987


Q ss_pred             c-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh----hhhccccchHHH
Q 031005           80 L-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM----DQFQQMEGFEEF  138 (167)
Q Consensus        80 l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~----~~~~~~~~l~~l  138 (167)
                      + |..++.+++|++|++++|.+..++...++.+++|+.|++++|.+..    ..+..+.+++.+
T Consensus        95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            7 7889999999999999999988886568999999999999999874    234444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=3e-15  Score=115.41  Aligned_cols=130  Identities=22%  Similarity=0.286  Sum_probs=109.3

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCc-cc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLT-CL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~-~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|.+..+ |..+..+++|++|++++|.+. .+ +..|..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  114 (455)
T 3v47_A           35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN  114 (455)
T ss_dssp             EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence            57888999866 677899999999999999987 45 46789999999999999999977 6688999999999999999


Q ss_pred             CCc-cch--hHhcCCCcCEEEccCCcCCCC-chHHhhCCCCCceEEcccCCCChhhhc
Q 031005           77 IGE-LPA--SICNLIHLKSLCLNNNNIGQI-PANLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        77 ~~~-l~~--~~~~~~~l~~l~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      ++. ++.  .+..+++|++|++++|.+..+ |...+..+++|+.|++++|.+......
T Consensus       115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  172 (455)
T 3v47_A          115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE  172 (455)
T ss_dssp             CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred             CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence            875 333  378899999999999999776 445578999999999999988754433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.7e-15  Score=119.79  Aligned_cols=123  Identities=22%  Similarity=0.218  Sum_probs=106.4

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      ++++|.++.. ..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+
T Consensus       238 ~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i  316 (597)
T 3oja_B          238 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV  316 (597)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc
Confidence            4566666653 5578899999999999999885 6788999999999999999999888788899999999999999999


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      |..+..+++|+.|++++|.+..++   +..++.|+.|++++|++.+..
T Consensus       317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence            888888999999999999998876   567889999999999998654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=8.1e-15  Score=117.22  Aligned_cols=130  Identities=28%  Similarity=0.392  Sum_probs=111.7

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |+++++.+..++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+
T Consensus        48 L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l  124 (605)
T 1m9s_A           48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI  124 (605)
T ss_dssp             CBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred             EECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC
Confidence            567888888886 58899999999999999999876 889999999999999999875 688999999999999999887


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh-hccccchH
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ-FQQMEGFE  136 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~l~  136 (167)
                      + .+..+++|+.|++++|.+..++.  +..+++|+.|++++|.+.... +..+..++
T Consensus       125 ~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~  178 (605)
T 1m9s_A          125 N-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ  178 (605)
T ss_dssp             G-GGGGCTTCSEEECCSSCCCCCGG--GGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             c-cccCCCccCEEECCCCccCCchh--hcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence            4 58889999999999999988843  899999999999999998542 33334443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=2.7e-17  Score=114.13  Aligned_cols=119  Identities=25%  Similarity=0.368  Sum_probs=106.7

Q ss_pred             CCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005            7 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN   86 (167)
Q Consensus         7 ~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~   86 (167)
                      .++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .+..
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            34456668999999999999999999988 889999999999999999999888888899999999999999887 6888


Q ss_pred             CCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           87 LIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        87 ~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +++|++|++++|.+..++. ..+..+++|+.+++++|++.+.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            8999999999999988765 5588999999999999998765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.7e-15  Score=103.09  Aligned_cols=107  Identities=26%  Similarity=0.361  Sum_probs=96.4

Q ss_pred             CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCc
Q 031005           21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN   99 (167)
Q Consensus        21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~   99 (167)
                      -+.+++++++++.+|..+.  ++++.|++++|.++.+|+.+..+++|+.|++++|.++.++ ..|..+++|++|++++|.
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3689999999999987653  6899999999999999999999999999999999999885 578899999999999999


Q ss_pred             CCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005          100 IGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus       100 l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      +..++...+..+++|+.|++++|.++....
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            999998779999999999999999985443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=2.8e-15  Score=120.58  Aligned_cols=124  Identities=24%  Similarity=0.390  Sum_probs=76.9

Q ss_pred             CcccCCCCCCCchhh-hCCCCCCEEEeeCCcCccccccc-cCC-------CCCcEEEeeCCCCCccchhhc--cCCCCCe
Q 031005            1 MTLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSL-------RNLVLLNVSNNKLKSLPESIG--SCYSLEE   69 (167)
Q Consensus         1 L~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~~l~~~~-~~l-------~~L~~l~l~~n~~~~~~~~~~--~l~~L~~   69 (167)
                      |++++|.+..+|..+ ..+++|++|++++|.++.+|... ...       ++|+.|++++|.++.+|..+.  .+++|+.
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~  517 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG  517 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence            356677777666553 45677777777777776665432 222       267777777777766666655  6667777


Q ss_pred             EEcCCCcCCccchhHhcCCCcCEEEcc------CCcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005           70 LQANDNLIGELPASICNLIHLKSLCLN------NNNI-GQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        70 l~l~~~~~~~l~~~~~~~~~l~~l~l~------~n~l-~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      |++++|.++.+|..+..+++|++|+++      +|.+ +.+|.. +..+++|+.|++++|.+.
T Consensus       518 L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             EECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC
T ss_pred             EECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCcCC
Confidence            777777666666666666666666663      3443 344443 556666666666666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=2.4e-15  Score=123.16  Aligned_cols=123  Identities=29%  Similarity=0.410  Sum_probs=71.0

Q ss_pred             cccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++|.+. .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence            34445444 445556666666666666666653 4555666666666666666665 34555556666666666666554


Q ss_pred             -ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005           79 -ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 -~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       .+|..+..+++|++|++++|.+. .+|.+ ++.+++|+.|++++|.+.
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc
Confidence             44555556666666666666663 33333 455566666666666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.60  E-value=4.7e-15  Score=110.30  Aligned_cols=120  Identities=20%  Similarity=0.365  Sum_probs=96.2

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +++++.++.+|..+  .++++.|++++|.++.++ ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.
T Consensus        39 ~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  116 (332)
T 2ft3_A           39 QCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE  116 (332)
T ss_dssp             ECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred             ECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence            45667777777654  367888888888888864 5788888888888888888877 5678888888888888888887


Q ss_pred             cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +|..+.  ++|++|++++|.+..++...+..+++|+.|++++|.++
T Consensus       117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            776554  68888888888888888777888888888888888875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=3.4e-15  Score=120.48  Aligned_cols=125  Identities=26%  Similarity=0.381  Sum_probs=84.0

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+..+++ .|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            3566677766544 467777777777777777765 4556777777777777777777655 466777777777777777


Q ss_pred             Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ..++ ..++.+++|++|++++|.+...+...+..+++|+.|++++|.++
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence            6664 45666777777777777765554444566666777777666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=7.5e-16  Score=113.83  Aligned_cols=125  Identities=20%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             cccCCCCC-CCchhh--hCCCCCCEEEeeCCcCccccccccCC-----CCCcEEEeeCCCCCccc-hhhccCCCCCeEEc
Q 031005            2 TLDGNRIT-SLPDEL--GQLVRLERLSILGNMLTCLPETIGSL-----RNLVLLNVSNNKLKSLP-ESIGSCYSLEELQA   72 (167)
Q Consensus         2 ~l~~~~i~-~l~~~~--~~l~~L~~L~l~~n~l~~l~~~~~~l-----~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l   72 (167)
                      ++++|.+. .+|..+  ..+++|++|++++|+++.+|..+..+     ++|++|++++|.+..++ ..+..+++|++|++
T Consensus       101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  180 (312)
T 1wwl_A          101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL  180 (312)
T ss_dssp             EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred             EccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence            34455554 344443  55555666666666555554444443     55556666665555553 34555555666666


Q ss_pred             CCCcCCc---cchhH--hcCCCcCEEEccCCcCCCC---chHHhhCCCCCceEEcccCCCCh
Q 031005           73 NDNLIGE---LPASI--CNLIHLKSLCLNNNNIGQI---PANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        73 ~~~~~~~---l~~~~--~~~~~l~~l~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ++|.+..   ++..+  ..+++|++|++++|.+..+   +...+..+++|+.|++++|.+..
T Consensus       181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            5555431   12222  4455555555555555422   22334455555555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=4e-15  Score=118.14  Aligned_cols=123  Identities=34%  Similarity=0.447  Sum_probs=95.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|.++.+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|. +.  ++|+.|++++|.++.+
T Consensus       125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          125 LDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSC
T ss_pred             EECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCch
Confidence            3566677776665   56778888888888777765   46788888888888888877 54  7899999999999888


Q ss_pred             chhHhcCCCc-------CEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005           81 PASICNLIHL-------KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE  136 (167)
Q Consensus        81 ~~~~~~~~~l-------~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~  136 (167)
                      |. +..  +|       +.|++++|.++.+|..++ .+++|+.|++++|+++...+..+..+.
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            77 543  67       999999999999998854 599999999999999987665554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.60  E-value=9.9e-16  Score=123.15  Aligned_cols=121  Identities=19%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             CCCCCCCchhhhCCCCCCEEEeeCCcCcc------------------cccccc--CCCCCcEEEeeCCCCC-ccchhhcc
Q 031005            5 GNRITSLPDELGQLVRLERLSILGNMLTC------------------LPETIG--SLRNLVLLNVSNNKLK-SLPESIGS   63 (167)
Q Consensus         5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~------------------l~~~~~--~l~~L~~l~l~~n~~~-~~~~~~~~   63 (167)
                      +|+++.+|.++.++++|++|++++|.++.                  +|..+.  .+++|++|++++|.+. .+|+.++.
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            45566688889999999999999999988                  888888  8999999999999876 56888888


Q ss_pred             CCCCCeEEcCCCc-CC--ccchhHhcC------CCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCC
Q 031005           64 CYSLEELQANDNL-IG--ELPASICNL------IHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        64 l~~L~~l~l~~~~-~~--~l~~~~~~~------~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +++|+.|++++|. ++  .+|..++.+      ++|++|++++|.+..+|. ..++.+++|+.|++++|.+.
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence            9999999999997 76  478777765      889999999999988887 24788889999999998887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=6.2e-15  Score=116.77  Aligned_cols=127  Identities=24%  Similarity=0.295  Sum_probs=87.1

Q ss_pred             cccCCCCCC-CchhhhCCCCCCEEEeeCCcCcccc---ccccCCCCCcEEEeeCCCCCc-cchh-hcc------------
Q 031005            2 TLDGNRITS-LPDELGQLVRLERLSILGNMLTCLP---ETIGSLRNLVLLNVSNNKLKS-LPES-IGS------------   63 (167)
Q Consensus         2 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~l~l~~n~~~~-~~~~-~~~------------   63 (167)
                      ++++|.+.. +|..+..+++|++|++++|+++.++   ..+..+++|+.|++++|.++. +|.. +..            
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            455566653 4555566666666666666665432   345555666666666665554 4331 222            


Q ss_pred             ---------C-CCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           64 ---------C-YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        64 ---------l-~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                               + ++|+.|++++|.++.+|..+..+++|++|++++|.+..+|...+..+++|+.+++++|++.++.
T Consensus       439 ~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence                     2 5777888888888778777778889999999999998888876788889999999999998753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=3.2e-15  Score=120.66  Aligned_cols=127  Identities=25%  Similarity=0.333  Sum_probs=111.6

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      +.++++++.+|..+.  +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.
T Consensus        10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             ECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred             ECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence            456778888887654  78999999999999986 4699999999999999999987 5678999999999999999998


Q ss_pred             cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhc
Q 031005           80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      +|. .+..+++|++|++++|.+..+++..++.+++|++|++++|.+......
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            876 689999999999999999999876789999999999999988754433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.59  E-value=1.5e-14  Score=107.98  Aligned_cols=121  Identities=25%  Similarity=0.404  Sum_probs=81.1

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      ++++|.+..++. +..+++|+.+++++|.++.++. +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+ 
T Consensus       183 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-  258 (347)
T 4fmz_A          183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-  258 (347)
T ss_dssp             ECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred             EccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-
Confidence            344455554433 4555555555555555555433 5666777777777777776655 66777777777777777766 


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ..+..+++|+++++++|.+..++.  +..+++|+.|++++|.+....
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGG
T ss_pred             hhHhcCCCcCEEEccCCccCCChh--hcCCCCCCEEECcCCcCCCcC
Confidence            346677788888888888777743  677788888888888877544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=2.7e-15  Score=118.51  Aligned_cols=127  Identities=20%  Similarity=0.321  Sum_probs=105.8

Q ss_pred             cccCCCCCCCc--hhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCc
Q 031005            2 TLDGNRITSLP--DELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNL   76 (167)
Q Consensus         2 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~   76 (167)
                      ++++|.+..++  ..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.+.  .+|..+..+++|+.|++++|.
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            45666666443  356788888888888888876 4567888899999999999887  467788889999999999999


Q ss_pred             CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++.+ |..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            9876 778888999999999999998888877899999999999999998763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=1.2e-15  Score=126.22  Aligned_cols=113  Identities=21%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             Cchhhh--CCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCC-CCc--cchhhccCC-------CCCeEEcCCCcC
Q 031005           11 LPDELG--QLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNK-LKS--LPESIGSCY-------SLEELQANDNLI   77 (167)
Q Consensus        11 l~~~~~--~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~-~~~--~~~~~~~l~-------~L~~l~l~~~~~   77 (167)
                      +|..+.  .+++|++|++++|.+.. +|..+..+++|+.|++++|. ++.  +|+.++.++       +|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            777765  78888888888887654 67777888888888888886 664  566555544       778888888877


Q ss_pred             Cccch--hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           78 GELPA--SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        78 ~~l~~--~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ..+|.  .+..+++|+.|++++|.+..+|  .++.+++|+.|++++|.+.
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc
Confidence            77776  7777777777777777777776  3677777777777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=8.5e-15  Score=116.32  Aligned_cols=117  Identities=25%  Similarity=0.310  Sum_probs=105.2

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|.++.+
T Consensus       446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence            5788999999987 99999999999999999999999999999999999999999987 889999999999999999987


Q ss_pred             --chhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEc
Q 031005           81 --PASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISL  119 (167)
Q Consensus        81 --~~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l  119 (167)
                        |..+..+++|+.|++++|.+..+|+   .++..+++|+.|++
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence              8899999999999999999966654   34566889998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=5.4e-15  Score=121.13  Aligned_cols=128  Identities=30%  Similarity=0.482  Sum_probs=114.7

Q ss_pred             CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005            1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI   77 (167)
Q Consensus         1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~   77 (167)
                      |++++|.+. .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  502 (768)
T 3rgz_A          423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL  502 (768)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence            467888887 678899999999999999999995 7889999999999999999999 5688999999999999999999


Q ss_pred             C-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           78 G-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        78 ~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      . .+|..++.+++|++|++++|.+. .+|.. +..+++|+.+++++|++.+..+
T Consensus       503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCC
T ss_pred             CCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCC
Confidence            7 67999999999999999999995 66665 7899999999999998875433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=5.5e-15  Score=100.60  Aligned_cols=111  Identities=22%  Similarity=0.308  Sum_probs=96.8

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh-HhcCCCcCEE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSL   93 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~-~~~~~~l~~l   93 (167)
                      +..+.+++.|++++|+++.++......++|+.|++++|.++.+ +.+..+++|+.|++++|.++.+|.. +..+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            5678899999999999998865333345999999999999988 6788999999999999999988754 5889999999


Q ss_pred             EccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005           94 CLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        94 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ++++|.++.++. ..+..+++|+.+++++|++..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            999999998886 347899999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=9.6e-15  Score=120.84  Aligned_cols=123  Identities=25%  Similarity=0.382  Sum_probs=79.9

Q ss_pred             cccCCCCCCCchhh-hCCCCCCEEEeeCCcCccccccccCC--------CCCcEEEeeCCCCCccchhhc--cCCCCCeE
Q 031005            2 TLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETIGSL--------RNLVLLNVSNNKLKSLPESIG--SCYSLEEL   70 (167)
Q Consensus         2 ~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~~l~~~~~~l--------~~L~~l~l~~n~~~~~~~~~~--~l~~L~~l   70 (167)
                      ++++|.+..+|..+ ..+++|+.|++++|.++.+|..+...        ++|+.|++++|.++.+|..+.  .+++|+.|
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence            56666666666654 36677777777777777666543222        267777777777776666665  67777777


Q ss_pred             EcCCCcCCccchhHhcCCCcCEEEccC------CcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005           71 QANDNLIGELPASICNLIHLKSLCLNN------NNI-GQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        71 ~l~~~~~~~l~~~~~~~~~l~~l~l~~------n~l-~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ++++|.+..+|..+..+++|+.|++++      |.+ +.+|.. +..+++|+.|++++|.+.
T Consensus       759 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~  819 (876)
T 4ecn_A          759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIR  819 (876)
T ss_dssp             ECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC
T ss_pred             EeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCC
Confidence            777777766666666777777777755      444 344443 566777777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=4.5e-15  Score=102.52  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=95.1

Q ss_pred             CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch--hhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccC
Q 031005           21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNN   97 (167)
Q Consensus        21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~   97 (167)
                      -+++++++++++.+|..+..  +++.|++++|.++.+++  .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            37899999999999876643  89999999999998865  388999999999999999877 67899999999999999


Q ss_pred             CcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           98 NNIGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                      |.+..++...+..+++|+.|++++|.++....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence            99998888778999999999999999985433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=1.1e-15  Score=112.85  Aligned_cols=125  Identities=16%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             CcccCCCCCC-Cc----hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---cch--hhccCCCCCe
Q 031005            1 MTLDGNRITS-LP----DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS---LPE--SIGSCYSLEE   69 (167)
Q Consensus         1 L~l~~~~i~~-l~----~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~---~~~--~~~~l~~L~~   69 (167)
                      |++++|.+.. .+    ..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..   ++.  .+..+++|++
T Consensus       122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  201 (310)
T 4glp_A          122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN  201 (310)
T ss_dssp             CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred             EEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence            4667777763 22    23456778888888888887754 567778888888888887653   322  2256777778


Q ss_pred             EEcCCCcCCccch----hHhcCCCcCEEEccCCcCCCC-chHHhhCC---CCCceEEcccCCCCh
Q 031005           70 LQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQI-PANLLKDC---KALQNISLHNNPISM  126 (167)
Q Consensus        70 l~l~~~~~~~l~~----~~~~~~~l~~l~l~~n~l~~~-~~~~~~~~---~~L~~l~l~~n~~~~  126 (167)
                      |++++|.++.++.    .+..+++|++|++++|.+... |.. +..+   ++|+.|++++|.++.
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~  265 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQ  265 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCS
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCc
Confidence            8887777765543    245667777777777777555 433 3343   577777777777763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=1e-14  Score=107.79  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=99.0

Q ss_pred             CcccCCCCCCCchhhhCC-----CCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---cchhh--ccCCCCCe
Q 031005            1 MTLDGNRITSLPDELGQL-----VRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS---LPESI--GSCYSLEE   69 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~---~~~~~--~~l~~L~~   69 (167)
                      |++++|++..+|..+..+     ++|++|++++|+++.++ ..+..+++|+.|++++|.+..   +++.+  ..+++|++
T Consensus       126 L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~  205 (312)
T 1wwl_A          126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV  205 (312)
T ss_dssp             EEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE
T ss_pred             EEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE
Confidence            467888888777777666     89999999999999876 788899999999999998763   34444  78889999


Q ss_pred             EEcCCCcCCccc---h-hHhcCCCcCEEEccCCcCCCCc-hHHhhCCCCCceEEcccCCCCh
Q 031005           70 LQANDNLIGELP---A-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        70 l~l~~~~~~~l~---~-~~~~~~~l~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      |++++|.++.++   . .+..+++|++|++++|.+...+ ...+..+++|+.|++++|.++.
T Consensus       206 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (312)
T 1wwl_A          206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ  267 (312)
T ss_dssp             EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred             EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence            999999888543   2 3356789999999999986644 2335667889999999998873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=120.60  Aligned_cols=127  Identities=22%  Similarity=0.273  Sum_probs=105.2

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCc-Cccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNM-LTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL   76 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~-l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~   76 (167)
                      |++++|.|+.+ +..|..+++|++|++++|. +..+ |..|..+++|++|++++|.+..+ |..|..+++|++|++++|.
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence            57888888865 6678899999999999995 4456 57889999999999999999977 6788999999999999998


Q ss_pred             CCc-cchh--HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           77 IGE-LPAS--ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        77 ~~~-l~~~--~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.. ++..  +..+++|++|++++|.+..++. ..++.+++|+.|++++|.+...
T Consensus       109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            874 4443  7889999999999999966533 4588999999999999988754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2.1e-14  Score=97.74  Aligned_cols=103  Identities=28%  Similarity=0.367  Sum_probs=90.9

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~~   78 (167)
                      ++++++++..+|..+.  +.|+.|++++|+++.+ |..|..+++|+.|++++|.++.+|+. |..+++|+.|++++|.++
T Consensus        17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            4678889999988664  8899999999999997 56889999999999999999999774 688999999999999999


Q ss_pred             ccchh-HhcCCCcCEEEccCCcCCCCch
Q 031005           79 ELPAS-ICNLIHLKSLCLNNNNIGQIPA  105 (167)
Q Consensus        79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~  105 (167)
                      .+|.. +..+++|++|++++|++...+.
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             eeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88764 8889999999999999965554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.56  E-value=1.6e-14  Score=112.08  Aligned_cols=112  Identities=23%  Similarity=0.308  Sum_probs=74.9

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |+++++.++.+| ++..+++|++|++++|.++.+|  +..+++|+.|++++|.++.++  +..+++|++|++++|.++.+
T Consensus        47 L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           47 LDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             EECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred             EEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee
Confidence            356677777665 5677777777777777777764  666777777777777777663  66677777777777777666


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      +  ++.+++|++|++++|.+..++   ++.+++|+.+++++|
T Consensus       122 ~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          122 D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLN  158 (457)
T ss_dssp             C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC
T ss_pred             c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCC
Confidence            4  566667777777777665553   344455555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=9.9e-15  Score=116.28  Aligned_cols=124  Identities=25%  Similarity=0.289  Sum_probs=71.8

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC-
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG-   78 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~-   78 (167)
                      ++++|.+..++. .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+. 
T Consensus       260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            455666665543 36667777777777777777776667777777777777776655 335566666666666666553 


Q ss_pred             ccc-hhHhcCCCcCEEEccCCcCCCCc--hHHhhCCCCCceEEcccCCCC
Q 031005           79 ELP-ASICNLIHLKSLCLNNNNIGQIP--ANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 ~l~-~~~~~~~~l~~l~l~~n~l~~~~--~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .++ ..+..+++|+++++++|.+..+.  ...+..+++|+.+++++|.+.
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence            332 23445555555555555554332  222444555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=2.7e-15  Score=110.66  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcc---cc--ccccCCCCCcEEEeeCCCCCccchh----hccCCCCCeE
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTC---LP--ETIGSLRNLVLLNVSNNKLKSLPES----IGSCYSLEEL   70 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~---l~--~~~~~l~~L~~l~l~~n~~~~~~~~----~~~l~~L~~l   70 (167)
                      |++++|.+..++ ..+..+++|++|++++|++..   ++  ..+..+++|++|++++|.++.++..    +..+++|++|
T Consensus       150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred             EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence            478889998664 568899999999999999764   43  2347889999999999999876542    4678999999


Q ss_pred             EcCCCcCCcc-chhHhcC---CCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh-hhccccchH
Q 031005           71 QANDNLIGEL-PASICNL---IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD-QFQQMEGFE  136 (167)
Q Consensus        71 ~l~~~~~~~l-~~~~~~~---~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~  136 (167)
                      ++++|.++.. |..+..+   ++|++|++++|.+..+|..+   .++|+.|++++|.++.. .+..++.++
T Consensus       230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCchhhhCCCcc
Confidence            9999999876 6666665   69999999999999888754   37899999999999863 334444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=1.7e-14  Score=97.73  Aligned_cols=102  Identities=27%  Similarity=0.390  Sum_probs=89.8

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++++++.+|..+  .+.+++|++++|.++.+ |..|..+++|+.|++++|.++.+|+ .|..+++|+.|++++|.++
T Consensus        14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence            467889999998765  38899999999999997 5679999999999999999999976 5689999999999999999


Q ss_pred             ccch-hHhcCCCcCEEEccCCcCCCCc
Q 031005           79 ELPA-SICNLIHLKSLCLNNNNIGQIP  104 (167)
Q Consensus        79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~  104 (167)
                      .++. .+..+++|++|++++|++.-.+
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           92 SIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            8865 5888999999999999985443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.55  E-value=6e-14  Score=108.82  Aligned_cols=118  Identities=25%  Similarity=0.386  Sum_probs=61.9

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA   82 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~   82 (167)
                      +++|.+..+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.+..+++ +..+++|+.|++++|.+..++.
T Consensus       250 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          250 LANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence            34444443332 4444555555555555554433 4445555555555555554433 4455555555555555554432


Q ss_pred             hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                       +..+++|+.+++++|.+..++.  +..+++|+.+++++|.+..
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             -hccCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccCc
Confidence             4455566666666666655532  5556666666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.4e-16  Score=110.59  Aligned_cols=123  Identities=23%  Similarity=0.282  Sum_probs=106.1

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+
T Consensus        53 L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~  130 (198)
T 1ds9_A           53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred             EECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCch
Confidence            467888888888 889999999999999999999888888899999999999999986 688899999999999999987


Q ss_pred             ch--hHhcCCCcCEEEccCCcCCCCc----------hHHhhCCCCCceEEcccCCCChh
Q 031005           81 PA--SICNLIHLKSLCLNNNNIGQIP----------ANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~--~~~~~~~l~~l~l~~n~l~~~~----------~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +.  .+..+++|+++++++|.+...+          ..++..+++|+.++  +++++..
T Consensus       131 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred             hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence            54  7889999999999999984332          23578899999987  7777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=1.3e-14  Score=113.40  Aligned_cols=126  Identities=22%  Similarity=0.264  Sum_probs=85.6

Q ss_pred             CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-----------------hc
Q 031005            1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-----------------IG   62 (167)
Q Consensus         1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-----------------~~   62 (167)
                      |++++|.+..+ |..+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+|+.                 ..
T Consensus        39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~  117 (487)
T 3oja_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS  117 (487)
T ss_dssp             EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC
T ss_pred             EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc
Confidence            46788888866 4578888889999998888887554 77778888888887777655321                 11


Q ss_pred             cCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005           63 SCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        63 ~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .+++|+.|++++|.++.+ |..++.+++|++|++++|.+..+++ .+...++.|+.|++++|.++..
T Consensus       118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            234566666666666554 4456667777777777777755433 3333677777777777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.52  E-value=1.6e-14  Score=106.86  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=83.1

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-----------------hc
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-----------------IG   62 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-----------------~~   62 (167)
                      |++++|.+..++ ..+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++..                 ..
T Consensus        39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~  117 (317)
T 3o53_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS  117 (317)
T ss_dssp             EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC
T ss_pred             EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc
Confidence            467888888764 578888999999999998887654 77788888888888877655321                 01


Q ss_pred             cCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHh-hCCCCCceEEcccCCCCh
Q 031005           63 SCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLL-KDCKALQNISLHNNPISM  126 (167)
Q Consensus        63 ~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~  126 (167)
                      .+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++...+ ..+++|+.|++++|.++.
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            2344555566666555542 355556677777777777755543323 456677777777777664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=6.2e-14  Score=108.75  Aligned_cols=121  Identities=25%  Similarity=0.353  Sum_probs=87.9

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      ++.++.+..+|. +..+++|++|++++|.++.+++ +..+++|+.|++++|.+..+++ +..+++|++|++++|.++.++
T Consensus        52 ~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~  128 (466)
T 1o6v_A           52 QADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID  128 (466)
T ss_dssp             ECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence            456666776653 6778888888888888887766 7778888888888888877765 777888888888888877775


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCch-------------------HHhhCCCCCceEEcccCCCCh
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPA-------------------NLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~-------------------~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      . +..+++|++|++++|.+..++.                   ..+..+++|+.|++++|.+..
T Consensus       129 ~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          129 P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence            4 6777788888888777765543                   014556667777777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.51  E-value=1.6e-13  Score=110.09  Aligned_cols=111  Identities=30%  Similarity=0.371  Sum_probs=80.7

Q ss_pred             CCCCEEEeeCCcCccccccccC-----------------CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005           19 VRLERLSILGNMLTCLPETIGS-----------------LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus        19 ~~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      ++|+.|++++|.++.+|..+..                 +++|+.|++++|.++.+|   ..+++|+.|++++|.++.+|
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp  257 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLP  257 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCC
Confidence            5556666666665554432111                 256777777777777665   34577888888888888777


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE  136 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~  136 (167)
                      .   .+++|+.|++++|.+..+|.. +..+++|+.|++++|+++...+..+..+.
T Consensus       258 ~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          258 M---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             C---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             c---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            6   567899999999999999876 78999999999999999977655544443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.49  E-value=1e-13  Score=107.48  Aligned_cols=116  Identities=28%  Similarity=0.319  Sum_probs=77.2

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|.++.+|  +..+++|++|++++|.++.++  +..+++|+.|++++|.++.++  +..+++|++|++++|.++.+
T Consensus        69 L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A           69 LICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred             EEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee
Confidence            467777777765  677888888888888887764  677788888888888777764  66777788888877777655


Q ss_pred             chhHhcCC----------------------CcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLI----------------------HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~----------------------~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +  +..++                      +|++|++++|.+..++   ++.+++|+.+++++|.++..
T Consensus       143 ~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          143 D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC
T ss_pred             c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee
Confidence            3  33444                      4555555555554443   34555555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=1.9e-13  Score=92.97  Aligned_cols=106  Identities=25%  Similarity=0.365  Sum_probs=93.1

Q ss_pred             CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEEccC
Q 031005           20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNN   97 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~l~~   97 (167)
                      ..+.+++++++++.+|..+.  ++++.|++++|.++.+++ .+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35789999999999886543  689999999999998865 56889999999999999998864 568899999999999


Q ss_pred             CcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           98 NNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      |.++.++...+..+++|+.|++++|.++..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  115 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV  115 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEe
Confidence            999999888789999999999999998744

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=2.5e-13  Score=107.87  Aligned_cols=69  Identities=38%  Similarity=0.479  Sum_probs=28.6

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      +++|.|+.+|   ..+++|++|++++|+++.+|. +..  +|+.|++++|.++.+|+   .+++|+.|++++|.++.+
T Consensus        87 Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l  155 (571)
T 3cvr_A           87 ITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTML  155 (571)
T ss_dssp             CCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred             CcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcC
Confidence            3444444444   223444444444444444443 222  44444444444444333   233344444444444333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.48  E-value=2.4e-13  Score=105.35  Aligned_cols=115  Identities=27%  Similarity=0.411  Sum_probs=71.2

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      ++++|+++.+| ++..+++|++|++++|+++.+|..+   .+|+.|++++|.++.+| .+..+++|+.+++++|.++.+|
T Consensus       137 ~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          137 GVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             ECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             ECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence            45566666665 4666666777777776666655432   35666666666666655 4666666666666666665554


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      ...   .+++++++++|.+..+|.  +..+++|+.+++++|.++.
T Consensus       212 ~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          212 DLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred             CCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence            321   356666666666666653  5666667777777666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=2.6e-13  Score=101.34  Aligned_cols=104  Identities=19%  Similarity=0.230  Sum_probs=82.3

Q ss_pred             CEEEeeCC-cCccccccccCCCCCcEEEeeC-CCCCccc-hhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccC
Q 031005           22 ERLSILGN-MLTCLPETIGSLRNLVLLNVSN-NKLKSLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNN   97 (167)
Q Consensus        22 ~~L~l~~n-~l~~l~~~~~~l~~L~~l~l~~-n~~~~~~-~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~   97 (167)
                      ..++++++ +++.+|. +..+.+|+.|++++ |.++.++ ..|..+++|+.|+|++|.++.++ ..|..+++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35677777 7888888 88888888888885 8888775 46788888888888888887664 4677888888888888


Q ss_pred             CcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           98 NNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      |.+..+|..++..++ |+.|++.+|++.+.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            888888877666665 88888888888865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.45  E-value=9.6e-14  Score=105.19  Aligned_cols=128  Identities=22%  Similarity=0.292  Sum_probs=100.1

Q ss_pred             CcccCCCCC--CCc---hhhhCCCCCCEEEeeCCcCc--c---c-cccccCCCCCcEEEeeCCCCC-----ccchhhccC
Q 031005            1 MTLDGNRIT--SLP---DELGQLVRLERLSILGNMLT--C---L-PETIGSLRNLVLLNVSNNKLK-----SLPESIGSC   64 (167)
Q Consensus         1 L~l~~~~i~--~l~---~~~~~l~~L~~L~l~~n~l~--~---l-~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l   64 (167)
                      |++++|++.  .++   ..+..+++|++|++++|+++  .   + +..+..+++|+.|++++|.++     .+|..+..+
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            467777776  334   45678889999999999887  2   2 337788899999999999884     567778888


Q ss_pred             CCCCeEEcCCCcCCc-----cchhHhc--CCCcCEEEccCCcCCC-----CchHHhhCCCCCceEEcccCCCChhh
Q 031005           65 YSLEELQANDNLIGE-----LPASICN--LIHLKSLCLNNNNIGQ-----IPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        65 ~~L~~l~l~~~~~~~-----l~~~~~~--~~~l~~l~l~~n~l~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++|+.|++++|.++.     ++..+..  +++|++|++++|.++.     ++..+...+++|+.|++++|+++...
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            999999999998874     3555543  7899999999999966     77765577899999999999998654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=9e-14  Score=103.22  Aligned_cols=111  Identities=18%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             chhhhCCCCCCEEEeeCC-cCcc--ccccccCCCCCcEEEeeCC-CCCc--cchhhccCC-CCCeEEcCCCc--C--Ccc
Q 031005           12 PDELGQLVRLERLSILGN-MLTC--LPETIGSLRNLVLLNVSNN-KLKS--LPESIGSCY-SLEELQANDNL--I--GEL   80 (167)
Q Consensus        12 ~~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~l~l~~n-~~~~--~~~~~~~l~-~L~~l~l~~~~--~--~~l   80 (167)
                      +..+..+++|++|++++| .++.  ++..+..+++|+.|++++| .++.  ++..+..++ +|++|++++|.  +  ..+
T Consensus       135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l  214 (336)
T 2ast_B          135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL  214 (336)
T ss_dssp             HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred             HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence            333444444444444444 3432  3333444444555555444 4442  233344444 55555555542  2  123


Q ss_pred             chhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccC
Q 031005           81 PASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      +..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus       215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            3344445555555555554 32211112444555555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=111.81  Aligned_cols=134  Identities=22%  Similarity=0.268  Sum_probs=110.5

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l~~L~~l~l~~~~~~   78 (167)
                      +.++++++.+|.   -.++++.|++++|.++.+ +..|..+++|++|++++|. +..+ |..|..+++|++|++++|.+.
T Consensus        10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             EESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             EccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            446678888886   557899999999999986 6789999999999999994 4466 668999999999999999998


Q ss_pred             cc-chhHhcCCCcCEEEccCCcCCC-Cch-HHhhCCCCCceEEcccCCCChh----hhccccchHHH
Q 031005           79 EL-PASICNLIHLKSLCLNNNNIGQ-IPA-NLLKDCKALQNISLHNNPISMD----QFQQMEGFEEF  138 (167)
Q Consensus        79 ~l-~~~~~~~~~l~~l~l~~n~l~~-~~~-~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~l  138 (167)
                      .+ |..+..+++|++|++++|.+.. ++. ..++.+++|+.|++++|.+...    .+..+.+++.|
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            76 7889999999999999999965 333 3478999999999999998743    34445555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=9.1e-14  Score=103.18  Aligned_cols=125  Identities=26%  Similarity=0.384  Sum_probs=81.8

Q ss_pred             cccCCCCC-C-CchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCC-CCCc--cchhhccCCCCCeEEcCCC
Q 031005            2 TLDGNRIT-S-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNN-KLKS--LPESIGSCYSLEELQANDN   75 (167)
Q Consensus         2 ~l~~~~i~-~-l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n-~~~~--~~~~~~~l~~L~~l~l~~~   75 (167)
                      ++++|.+. . ++..+..+++|++|++++|.++. .+..+..+++|+.|++++| .++.  ++..+..+++|++|++++|
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            45555554 2 45556677777777777777663 4556666777777777777 5662  4555666777777777777


Q ss_pred             -cCCc--cchhHhcCC-CcCEEEccCCc--C--CCCchHHhhCCCCCceEEcccCC-CChh
Q 031005           76 -LIGE--LPASICNLI-HLKSLCLNNNN--I--GQIPANLLKDCKALQNISLHNNP-ISMD  127 (167)
Q Consensus        76 -~~~~--l~~~~~~~~-~l~~l~l~~n~--l--~~~~~~~~~~~~~L~~l~l~~n~-~~~~  127 (167)
                       .++.  ++..+..++ +|++|++++|.  +  ..++. .+..+++|+.|++++|. ++..
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKND  238 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGG
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHH
Confidence             6653  455666777 77777777773  3  22333 35677788888888877 5543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=1.1e-12  Score=97.92  Aligned_cols=101  Identities=20%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             cccCC-CCCCCchhhhCCCCCCEEEeeC-CcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005            2 TLDGN-RITSLPDELGQLVRLERLSILG-NMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI   77 (167)
Q Consensus         2 ~l~~~-~i~~l~~~~~~l~~L~~L~l~~-n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~   77 (167)
                      +.+++ ++..+|. +..+.+|+.|++++ |.++.++ ..|..+++|+.|++++|.++.+++ .|..+++|++|+|++|.+
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            44566 7889999 99999999999996 9999987 679999999999999999998855 789999999999999999


Q ss_pred             CccchhHhcCCCcCEEEccCCcCCCC
Q 031005           78 GELPASICNLIHLKSLCLNNNNIGQI  103 (167)
Q Consensus        78 ~~l~~~~~~~~~l~~l~l~~n~l~~~  103 (167)
                      +.+|........|+.|++.+|.+.-.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCccCC
Confidence            99876554444499999999999543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=1.9e-12  Score=103.83  Aligned_cols=92  Identities=35%  Similarity=0.394  Sum_probs=54.0

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      +++++.++.+|..+.  ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.++.+|
T Consensus        46 ~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~  117 (622)
T 3g06_A           46 NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP  117 (622)
T ss_dssp             ECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC
T ss_pred             EecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC
Confidence            566666766665543  567777777777666655   34666666676666666654   4556666666666655554


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCc
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIP  104 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~  104 (167)
                      .   .+.+|+.|++++|.+..+|
T Consensus       118 ~---~l~~L~~L~L~~N~l~~lp  137 (622)
T 3g06_A          118 A---LPSGLCKLWIFGNQLTSLP  137 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSCCC
T ss_pred             C---CCCCcCEEECCCCCCCcCC
Confidence            4   2334444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=2.8e-13  Score=101.53  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=86.3

Q ss_pred             cccCCCCC-CCch-hhhCCCCCCE-EEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---------------------
Q 031005            2 TLDGNRIT-SLPD-ELGQLVRLER-LSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS---------------------   56 (167)
Q Consensus         2 ~l~~~~i~-~l~~-~~~~l~~L~~-L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~---------------------   56 (167)
                      ++++|.+. .+|. .|..++++.+ +.+.+|+++.++ ..|..+++|+.+++++|.+..                     
T Consensus        60 ~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~  139 (350)
T 4ay9_X           60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI  139 (350)
T ss_dssp             EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred             ECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence            45555553 2332 3445555443 333445555543 345555555555555555443                     


Q ss_pred             ----cch-hhccC-CCCCeEEcCCCcCCccchhHhcCCCcCEEEcc-CCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005           57 ----LPE-SIGSC-YSLEELQANDNLIGELPASICNLIHLKSLCLN-NNNIGQIPANLLKDCKALQNISLHNNPISMDQF  129 (167)
Q Consensus        57 ----~~~-~~~~l-~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~-~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  129 (167)
                          +++ .|..+ ..++.|++++|.++.++.......++..+++. +|.++.+|..+|+.+++|+.|++++|.++....
T Consensus       140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence                322 22233 24777888888888887766666788889886 467899998888999999999999999886544


Q ss_pred             ccccchHHHH
Q 031005          130 QQMEGFEEFE  139 (167)
Q Consensus       130 ~~~~~l~~l~  139 (167)
                      ..+.++..|.
T Consensus       220 ~~~~~L~~L~  229 (350)
T 4ay9_X          220 YGLENLKKLR  229 (350)
T ss_dssp             SSCTTCCEEE
T ss_pred             hhhccchHhh
Confidence            4455544433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.37  E-value=2.6e-12  Score=99.53  Aligned_cols=78  Identities=28%  Similarity=0.420  Sum_probs=38.1

Q ss_pred             CCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEccc
Q 031005           42 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN  121 (167)
Q Consensus        42 ~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~  121 (167)
                      ++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+   .+++++++++|.+..+|.  ++.+++|+.+++++
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCC
Confidence            34555555555555544 3555555555555555554444321   245555555555544442  44455555555554


Q ss_pred             CCCC
Q 031005          122 NPIS  125 (167)
Q Consensus       122 n~~~  125 (167)
                      |.+.
T Consensus       205 N~l~  208 (454)
T 1jl5_A          205 NSLK  208 (454)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            4443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=4.6e-13  Score=101.44  Aligned_cols=17  Identities=24%  Similarity=0.387  Sum_probs=6.9

Q ss_pred             hCCCCCceEEcccCCCC
Q 031005          109 KDCKALQNISLHNNPIS  125 (167)
Q Consensus       109 ~~~~~L~~l~l~~n~~~  125 (167)
                      ..+++|+.|++++|.+.
T Consensus       241 ~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             GGCTTCCEEECTTCCCC
T ss_pred             ccCCCcCEEECCCCCCc
Confidence            33334444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.33  E-value=2.6e-12  Score=96.60  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             CCEEEeeCCcCcccc-----ccccCCC-CCcEEEeeCCCCCcc-chhhccC-----CCCCeEEcCCCcCC
Q 031005           21 LERLSILGNMLTCLP-----ETIGSLR-NLVLLNVSNNKLKSL-PESIGSC-----YSLEELQANDNLIG   78 (167)
Q Consensus        21 L~~L~l~~n~l~~l~-----~~~~~l~-~L~~l~l~~n~~~~~-~~~~~~l-----~~L~~l~l~~~~~~   78 (167)
                      |++|++++|.++..+     ..+..++ +|+.|++++|.++.. +..+..+     ++|++|++++|.++
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            555555555554432     2344444 455555555555433 2222222     44555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.31  E-value=5e-12  Score=94.71  Aligned_cols=98  Identities=19%  Similarity=0.316  Sum_probs=46.9

Q ss_pred             CCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCc-cch-hhccCCCCCe-EEcCCCcCCcc
Q 031005            5 GNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKS-LPE-SIGSCYSLEE-LQANDNLIGEL   80 (167)
Q Consensus         5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~-~~~-~~~~l~~L~~-l~l~~~~~~~l   80 (167)
                      +++++++|..+  .+++++|++++|+|+.+|. .|..+++|++|++++|.+.. +|+ .|..++++.+ +.+..|.+..+
T Consensus        18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            34455555433  2345555555555555542 45555555555555555432 332 3444444433 33334445444


Q ss_pred             -chhHhcCCCcCEEEccCCcCCCCc
Q 031005           81 -PASICNLIHLKSLCLNNNNIGQIP  104 (167)
Q Consensus        81 -~~~~~~~~~l~~l~l~~n~l~~~~  104 (167)
                       |..+..+++|+++++++|.+..++
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~  120 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLP  120 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred             CchhhhhccccccccccccccccCC
Confidence             234444555555555555544333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.28  E-value=2.8e-12  Score=96.45  Aligned_cols=13  Identities=15%  Similarity=0.184  Sum_probs=5.9

Q ss_pred             CCceEEcccCCCC
Q 031005          113 ALQNISLHNNPIS  125 (167)
Q Consensus       113 ~L~~l~l~~n~~~  125 (167)
                      +|+.|++++|.+.
T Consensus       226 ~L~~L~Ls~N~l~  238 (362)
T 3goz_A          226 HVVSLNLCLNCLH  238 (362)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CceEEECcCCCCC
Confidence            4444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=3.1e-12  Score=98.62  Aligned_cols=125  Identities=24%  Similarity=0.232  Sum_probs=75.7

Q ss_pred             cccCCCCCC-----CchhhhCCCCCCEEEeeCCcCccc-----cccc-cCCCCCcEEEeeCCCCCc-----cchhhccCC
Q 031005            2 TLDGNRITS-----LPDELGQLVRLERLSILGNMLTCL-----PETI-GSLRNLVLLNVSNNKLKS-----LPESIGSCY   65 (167)
Q Consensus         2 ~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~l~~l-----~~~~-~~l~~L~~l~l~~n~~~~-----~~~~~~~l~   65 (167)
                      ++++|.++.     ++..+..+++|++|++++|.++..     ...+ ...++|+.|++++|.++.     ++..+..++
T Consensus       262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  341 (461)
T 1z7x_W          262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR  341 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred             ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence            455555553     455555566666666666666531     1111 122466777777776663     344556667


Q ss_pred             CCCeEEcCCCcCCcc-chhHh----c-CCCcCEEEccCCcCC-----CCchHHhhCCCCCceEEcccCCCChh
Q 031005           66 SLEELQANDNLIGEL-PASIC----N-LIHLKSLCLNNNNIG-----QIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        66 ~L~~l~l~~~~~~~l-~~~~~----~-~~~l~~l~l~~n~l~-----~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +|++|++++|.++.. +..+.    . .++|++|++++|.++     .++.. +..+++|+.+++++|++...
T Consensus       342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHH
T ss_pred             CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCHH
Confidence            778888877777533 22222    1 567888888888776     34443 56678888888888888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.18  E-value=1.2e-11  Score=95.38  Aligned_cols=77  Identities=22%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             cccCCCCCC-----CchhhhCCCCCCEEEeeCCcCccc-----cc-cccCCCCCcEEEeeCCCCCc-----cchhhccCC
Q 031005            2 TLDGNRITS-----LPDELGQLVRLERLSILGNMLTCL-----PE-TIGSLRNLVLLNVSNNKLKS-----LPESIGSCY   65 (167)
Q Consensus         2 ~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~l~~l-----~~-~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~   65 (167)
                      ++++|.++.     ++..+..+++|++|++++|.++..     .. .+..+++|+.|++++|.++.     ++..+..++
T Consensus       205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  284 (461)
T 1z7x_W          205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE  284 (461)
T ss_dssp             ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred             EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence            455555553     344455566666666666665531     11 12245566666666666653     444455556


Q ss_pred             CCCeEEcCCCcCC
Q 031005           66 SLEELQANDNLIG   78 (167)
Q Consensus        66 ~L~~l~l~~~~~~   78 (167)
                      +|++|++++|.++
T Consensus       285 ~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          285 SLKELSLAGNELG  297 (461)
T ss_dssp             TCCEEECTTCCCH
T ss_pred             CcceEECCCCCCc
Confidence            6666666666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=5.3e-11  Score=88.35  Aligned_cols=90  Identities=18%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             CCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC-EEEccCCcCCCCchHHhhCCCCCceE
Q 031005           41 LRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNI  117 (167)
Q Consensus        41 l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~-~l~l~~n~l~~~~~~~~~~~~~L~~l  117 (167)
                      +++|+.+++.+|.++.+|+ .|..+.+|+.+++..| ++.++ ..|..+.+|+ .+++.+ .+..++..+|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            4566666666666666654 5666667777777665 55553 3566666676 677666 6666666666777777777


Q ss_pred             EcccCCCChhhhccc
Q 031005          118 SLHNNPISMDQFQQM  132 (167)
Q Consensus       118 ~l~~n~~~~~~~~~~  132 (167)
                      ++..|.++......+
T Consensus       303 ~l~~n~i~~I~~~aF  317 (329)
T 3sb4_A          303 LATGDKITTLGDELF  317 (329)
T ss_dssp             EECSSCCCEECTTTT
T ss_pred             EeCCCccCccchhhh
Confidence            766666654433333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.7e-11  Score=92.78  Aligned_cols=129  Identities=22%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             cccCCCCCCC-chh-hhCCCCCCEEEeeCCcCccc-----cccc-cCCCCCcEEEeeCCCCCc-----cchhhccCCCCC
Q 031005            2 TLDGNRITSL-PDE-LGQLVRLERLSILGNMLTCL-----PETI-GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLE   68 (167)
Q Consensus         2 ~l~~~~i~~l-~~~-~~~l~~L~~L~l~~n~l~~l-----~~~~-~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~   68 (167)
                      ++++|.++.. ... ...+.+|+.|++++|.++..     ...+ ...++|+.|++++|.++.     ++..+..+++|+
T Consensus       107 ~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~  186 (372)
T 3un9_A          107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT  186 (372)
T ss_dssp             ECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCC
T ss_pred             EecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcC
Confidence            5556665421 111 22345667777777776632     1122 235678888888887763     344556677888


Q ss_pred             eEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccCCCChhhhc
Q 031005           69 ELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        69 ~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      +|++++|.++.     ++..+...++|++|++++|.++....    .++...+.|+.|++++|++......
T Consensus       187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence            88888887763     24455667788888888888854322    2244567888888888888755433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=6.7e-10  Score=82.41  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             CCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCC-eEEcCCCcCCccc-hhHhcCCCcCEE
Q 031005           18 LVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE-ELQANDNLIGELP-ASICNLIHLKSL   93 (167)
Q Consensus        18 l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~-~l~l~~~~~~~l~-~~~~~~~~l~~l   93 (167)
                      +++|+.+++++|+++.++ ..|..+.+|+.+++.+| +..+++ +|..+.+|+ .+++.. .++.++ ..|..+.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999999997 57999999999999997 888855 789999999 999988 777774 688899999999


Q ss_pred             EccCCcCCCCchHHhhCCCCCceEEc
Q 031005           94 CLNNNNIGQIPANLLKDCKALQNISL  119 (167)
Q Consensus        94 ~l~~n~l~~~~~~~~~~~~~L~~l~l  119 (167)
                      ++.+|.+..++..+|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999989999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.94  E-value=4.4e-10  Score=84.98  Aligned_cols=127  Identities=20%  Similarity=0.213  Sum_probs=91.2

Q ss_pred             CcccCCCCCCC-chh----h-hCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccC
Q 031005            1 MTLDGNRITSL-PDE----L-GQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSC   64 (167)
Q Consensus         1 L~l~~~~i~~l-~~~----~-~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l   64 (167)
                      |++++|.++.. ...    + ...+.|++|++++|.++.     ++..+...++|+.|++++|.+..     ++..+...
T Consensus       131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence            47888888732 222    3 346889999999999874     45566788999999999999883     35567778


Q ss_pred             CCCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCC-----CceEE--cccCCCChh
Q 031005           65 YSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA-----LQNIS--LHNNPISMD  127 (167)
Q Consensus        65 ~~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~-----L~~l~--l~~n~~~~~  127 (167)
                      ++|+.|++++|.++.     ++..+...++|++|++++|.++......+..+..     ++.+.  +.++.+...
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            899999999999974     3455667899999999999997655544444322     66666  666666544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=1e-09  Score=75.17  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=91.1

Q ss_pred             hhhCCCCCCEEEeeCC-cCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccCCCCCeEEcCCCcCCc---
Q 031005           14 ELGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE---   79 (167)
Q Consensus        14 ~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~~l~l~~~~~~~---   79 (167)
                      .+...+.|++|++++| .+..     +...+...++|+.|++++|.+..     +...+...++|++|++++|.++.   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4567889999999999 8873     44567778999999999999983     35566677899999999999973   


Q ss_pred             --cchhHhcCCCcCEEEc--cCCcCCCCc----hHHhhCCCCCceEEcccCCCChh
Q 031005           80 --LPASICNLIHLKSLCL--NNNNIGQIP----ANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        80 --l~~~~~~~~~l~~l~l--~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                        +...+...++|++|++  ++|.++...    ...+...+.|+.|++++|.+...
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence              4556777889999999  889995432    23456678999999999988755

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.81  E-value=3e-09  Score=84.33  Aligned_cols=91  Identities=11%  Similarity=-0.026  Sum_probs=58.2

Q ss_pred             ccCCCCCcEEEeeCCC--CCc-cchhh-ccCCCCCeEEcCCCcCCc--cchhHhcCCCcCEEEccCCcCCCC-chHHhhC
Q 031005           38 IGSLRNLVLLNVSNNK--LKS-LPESI-GSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQI-PANLLKD  110 (167)
Q Consensus        38 ~~~l~~L~~l~l~~n~--~~~-~~~~~-~~l~~L~~l~l~~~~~~~--l~~~~~~~~~l~~l~l~~n~l~~~-~~~~~~~  110 (167)
                      +..+++|+.|+++.|.  ++. .+..+ ..+++|+.|++++|.++.  ++..+..+++|+.|++++|.++.. .......
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3445666666665432  331 12222 336778888888887753  344556778888888888887422 2334567


Q ss_pred             CCCCceEEcccCCCChhh
Q 031005          111 CKALQNISLHNNPISMDQ  128 (167)
Q Consensus       111 ~~~L~~l~l~~n~~~~~~  128 (167)
                      +++|+.|++++|.++...
T Consensus       512 l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             CSSCCEEEEESCBCCTTC
T ss_pred             cCccCeeECcCCcCCHHH
Confidence            888888888888887653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=9.3e-09  Score=70.33  Aligned_cols=101  Identities=23%  Similarity=0.274  Sum_probs=80.8

Q ss_pred             CcccCC-CCC-----CCchhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccC
Q 031005            1 MTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSC   64 (167)
Q Consensus         1 L~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l   64 (167)
                      |++++| .+.     .+...+...+.|++|++++|.+..     +...+...++|+.|++++|.+..     +...+...
T Consensus        41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n  120 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN  120 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence            467777 776     245567788999999999999873     34566777899999999999983     45667778


Q ss_pred             CCCCeEEc--CCCcCCc-----cchhHhcCCCcCEEEccCCcCC
Q 031005           65 YSLEELQA--NDNLIGE-----LPASICNLIHLKSLCLNNNNIG  101 (167)
Q Consensus        65 ~~L~~l~l--~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~  101 (167)
                      ++|++|++  ++|.++.     +...+...++|++|++++|.++
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            89999999  8899873     4456677889999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.66  E-value=1.6e-08  Score=80.15  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             hhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcC
Q 031005           15 LGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAN   73 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~   73 (167)
                      +..+++|+.|++++|.++.     ++..+..+++|+.|++++|.+..++..+..+++|++++++
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            3455666666666666541     2333445566666666666555555445555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.54  E-value=1.7e-07  Score=71.54  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-hHhcCCC
Q 031005           13 DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIH   89 (167)
Q Consensus        13 ~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~   89 (167)
                      .+|..+.+|+.+++..|+++.++. .|. ..+|+.+.+.. .+..++. +|..+++|+.+++..+ ++.++. .|.. ++
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG  249 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence            346677777777777777776653 333 46666666653 3555533 5666777777777554 222221 2222 33


Q ss_pred             cCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005           90 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        90 l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      |+.+.+ .+.+..++..+|..|++|+.+.+.++
T Consensus       250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred             ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence            444444 22333444444444444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=4.7e-07  Score=65.36  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             cCCCCCeEEcCCCcCCcc---chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCC
Q 031005           63 SCYSLEELQANDNLIGEL---PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        63 ~l~~L~~l~l~~~~~~~l---~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .++.|+.|++++|.+..+   +..+..+++|+.|++++|.+..+.. ..+..+ .|+.|++++|+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            345555555555555433   2334455555555555555544422 112222 5555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.43  E-value=1.5e-07  Score=74.60  Aligned_cols=39  Identities=15%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             CCCCCCEEEeeCC-cCcc--ccccccCCCCCcEEEeeCCCCC
Q 031005           17 QLVRLERLSILGN-MLTC--LPETIGSLRNLVLLNVSNNKLK   55 (167)
Q Consensus        17 ~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~l~l~~n~~~   55 (167)
                      .+++|+.|++++| .++.  ++..+..+++|+.|++++|.++
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence            3455555555555 3332  2233334555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.42  E-value=2.6e-07  Score=66.70  Aligned_cols=94  Identities=19%  Similarity=0.300  Sum_probs=67.3

Q ss_pred             EEeeCCcCccccc----cccCCCCCcEEEeeCCCCCccc---hhhccCCCCCeEEcCCCcCCccchhHhcCC--CcCEEE
Q 031005           24 LSILGNMLTCLPE----TIGSLRNLVLLNVSNNKLKSLP---ESIGSCYSLEELQANDNLIGELPASICNLI--HLKSLC   94 (167)
Q Consensus        24 L~l~~n~l~~l~~----~~~~l~~L~~l~l~~n~~~~~~---~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~--~l~~l~   94 (167)
                      ++++.|....++.    ....+++|+.|++++|.++.++   ..+..+++|+.|++++|.+..+. .+..+.  +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence            5566665443332    2245788999999999888653   45678899999999999988662 233333  899999


Q ss_pred             ccCCcCC-CCc------hHHhhCCCCCceEE
Q 031005           95 LNNNNIG-QIP------ANLLKDCKALQNIS  118 (167)
Q Consensus        95 l~~n~l~-~~~------~~~~~~~~~L~~l~  118 (167)
                      +++|++. .+|      ..++..+++|+.||
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999984 344      24578899999886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.39  E-value=1.3e-06  Score=66.56  Aligned_cols=93  Identities=11%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             Ccccc-ccccCCCCCcEEEeeCCCCC-----ccc-hhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCC
Q 031005           31 LTCLP-ETIGSLRNLVLLNVSNNKLK-----SLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQ  102 (167)
Q Consensus        31 l~~l~-~~~~~l~~L~~l~l~~n~~~-----~~~-~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~  102 (167)
                      ++.++ ..|..+++|+.+.+.++.+.     .++ ..|..+++|+.+.+.. .++.++ ..|..+.+|+.+.+..+ +..
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            44443 45677778888888776554     453 3677788888888873 466664 46777788888888544 777


Q ss_pred             CchHHhhCCCCCceEEcccCCCCh
Q 031005          103 IPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus       103 ~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      +...+|..+ +|+.+.+.+|.+..
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcc
Confidence            777778888 88888888886654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.29  E-value=6.1e-07  Score=71.06  Aligned_cols=106  Identities=20%  Similarity=0.309  Sum_probs=69.6

Q ss_pred             hCCCCCCEEEeeCCcCcc-cccccc-CCCCCcEEEeeCC-CCCc--cchhhccCCCCCeEEcCCCcCCcc-----chhHh
Q 031005           16 GQLVRLERLSILGNMLTC-LPETIG-SLRNLVLLNVSNN-KLKS--LPESIGSCYSLEELQANDNLIGEL-----PASIC   85 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~-l~~~~~-~l~~L~~l~l~~n-~~~~--~~~~~~~l~~L~~l~l~~~~~~~l-----~~~~~   85 (167)
                      ..+++|++|++++|.++. .+..+. .+++|+.|++.+| .++.  ++.....+++|++|++++|.++..     +....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            457788888888887764 233443 5778888888888 4543  344445788888888888876532     22223


Q ss_pred             cCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccC
Q 031005           86 NLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNN  122 (167)
Q Consensus        86 ~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n  122 (167)
                      .+++|+.|++++|. ..+..    .+...+++|+.|++++|
T Consensus       182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            55688888888776 33322    22345688888888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=5.5e-06  Score=62.33  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=54.0

Q ss_pred             CchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhh--ccCCCCCeEEcCC--Cc------CCc
Q 031005           11 LPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESI--GSCYSLEELQAND--NL------IGE   79 (167)
Q Consensus        11 l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~--~~l~~L~~l~l~~--~~------~~~   79 (167)
                      +...+..+|+|+.|.++++.-..++. + .+++|+.|++..+.+..- ...+  ..+++|+.|++..  +.      +..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            44556677888888887773222332 2 255666666666555421 1122  2456666665531  11      111


Q ss_pred             cchhH--hcCCCcCEEEccCCcCCC-CchHHh--hCCCCCceEEcccCCCCh
Q 031005           80 LPASI--CNLIHLKSLCLNNNNIGQ-IPANLL--KDCKALQNISLHNNPISM  126 (167)
Q Consensus        80 l~~~~--~~~~~l~~l~l~~n~l~~-~~~~~~--~~~~~L~~l~l~~n~~~~  126 (167)
                      +...+  ..+++|++|++.+|.++. ....+.  ..++.|+.|+++.|.+..
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            11111  134566666666555532 111111  134456666666555553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.17  E-value=3.1e-06  Score=63.71  Aligned_cols=115  Identities=19%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             CCCCCCEEEeeCCcCcc-ccccc--cCCCCCcEEEeeCC--C------CCccchhh--ccCCCCCeEEcCCCcCCc-cch
Q 031005           17 QLVRLERLSILGNMLTC-LPETI--GSLRNLVLLNVSNN--K------LKSLPESI--GSCYSLEELQANDNLIGE-LPA   82 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~-l~~~~--~~l~~L~~l~l~~n--~------~~~~~~~~--~~l~~L~~l~l~~~~~~~-l~~   82 (167)
                      .+++|+.|++..+.++. ....+  ..+++|+.|+++.+  .      +..+.+.+  ..+++|+.|++.+|.++. .+.
T Consensus       191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            37899999999998764 22333  36899999998632  1      22222223  247899999999998863 222


Q ss_pred             hHh---cCCCcCEEEccCCcCCCCchHH----hhCCCCCceEEcccCCCChhhhcc
Q 031005           83 SIC---NLIHLKSLCLNNNNIGQIPANL----LKDCKALQNISLHNNPISMDQFQQ  131 (167)
Q Consensus        83 ~~~---~~~~l~~l~l~~n~l~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~  131 (167)
                      .+.   .+++|++|+++.|.++..-...    +..+++|+.|+++.|.+.......
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence            332   4679999999999885432111    245789999999999988654443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.09  E-value=1.8e-05  Score=59.95  Aligned_cols=121  Identities=16%  Similarity=0.357  Sum_probs=89.8

Q ss_pred             hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCc
Q 031005           14 ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL   90 (167)
Q Consensus        14 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l   90 (167)
                      +|..+..|+.+.+..+- ..+. ..|..+..|+.+.+. +.+..+++ .|..+.+|+.+.+..+ ++.+. ..|..+.+|
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            46778888888886553 3443 567888999999885 46777755 7888999999999765 65563 578888999


Q ss_pred             CEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHH
Q 031005           91 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF  138 (167)
Q Consensus        91 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l  138 (167)
                      +.+.+.. .+..+...+|.+|.+|+.+++.++......+....+++.+
T Consensus       337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i  383 (394)
T 4gt6_A          337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNL  383 (394)
T ss_dssp             CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC---
T ss_pred             CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEE
Confidence            9999964 4888999899999999999999876544434444455544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.04  E-value=6.9e-06  Score=52.81  Aligned_cols=57  Identities=26%  Similarity=0.411  Sum_probs=41.7

Q ss_pred             eEEcCCCcCC--ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           69 ELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        69 ~l~l~~~~~~--~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .++-+++.++  .+|..+.  .++++|+|++|.|+.++..+|..+++|+.|++.+|++.++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5555666665  6664332  3678888888888888887788888888888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1e-05  Score=54.64  Aligned_cols=82  Identities=10%  Similarity=0.136  Sum_probs=45.2

Q ss_pred             CCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc-CCcc-chhHhcC----CCcCEEEccCCc-CCCCchHHhhCCCC
Q 031005           42 RNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL-IGEL-PASICNL----IHLKSLCLNNNN-IGQIPANLLKDCKA  113 (167)
Q Consensus        42 ~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~-~~~l-~~~~~~~----~~l~~l~l~~n~-l~~~~~~~~~~~~~  113 (167)
                      ..|+.||++++.++.. -..+..+++|+.|++++|. ++.- -..+...    ++|++|++++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3466666666665522 1234566666666666663 4421 1223332    357777777764 54433333566777


Q ss_pred             CceEEcccCC
Q 031005          114 LQNISLHNNP  123 (167)
Q Consensus       114 L~~l~l~~n~  123 (167)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.00  E-value=3.5e-05  Score=53.00  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             hhCCCCCCEEEeeCC-cCc-----cccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCc----
Q 031005           15 LGQLVRLERLSILGN-MLT-----CLPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE----   79 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n-~l~-----~l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~----   79 (167)
                      +..-+.|++|+++++ .+.     .+...+..-..|+.|++++|.+.     .+.+.+..-.+|+.|+++.|.|+.    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            456778999999986 776     24566777789999999999998     345566677899999999999972    


Q ss_pred             -cchhHhcCCCcCEEEccCC---cCCCC----chHHhhCCCCCceEEcccCCCC
Q 031005           80 -LPASICNLIHLKSLCLNNN---NIGQI----PANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        80 -l~~~~~~~~~l~~l~l~~n---~l~~~----~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       +...+.....|+.|++++|   .++..    -..++..-+.|+.++++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence             3445666678999999865   44321    1234566778999999876544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.89  E-value=5.4e-05  Score=56.83  Aligned_cols=105  Identities=24%  Similarity=0.361  Sum_probs=70.6

Q ss_pred             hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC
Q 031005           15 LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK   91 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~   91 (167)
                      +..+..|+.+.+..+ ++.+. ..|....+|+.+.+.. .+..++. .|..+.+|+.+.+.++.++.++ ..|.++.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            455666666666554 55553 4566677777777654 3555543 5677788888888777777664 4677777888


Q ss_pred             EEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005           92 SLCLNNNNIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      .+.+..+ +..+...+|.+|.+|+.+.+..+
T Consensus       314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8887543 67777777888888887777544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=3.1e-05  Score=52.28  Aligned_cols=98  Identities=9%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             CCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccC----CCCCeEEcCCCc-CCcc-chhHhcCC
Q 031005           18 LVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSC----YSLEELQANDNL-IGEL-PASICNLI   88 (167)
Q Consensus        18 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l----~~L~~l~l~~~~-~~~l-~~~~~~~~   88 (167)
                      -..|+.|++++|.++.. -..+..+++|+.|++++|. ++.- -..+..+    ++|++|++++|. ++.- -..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34689999999998853 2556889999999999994 6621 1234443    479999999984 7632 13567789


Q ss_pred             CcCEEEccCCc-CCCCc---hHHhhCCCCCc
Q 031005           89 HLKSLCLNNNN-IGQIP---ANLLKDCKALQ  115 (167)
Q Consensus        89 ~l~~l~l~~n~-l~~~~---~~~~~~~~~L~  115 (167)
                      +|++|++++++ ++...   ...-..+|.++
T Consensus       140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            99999999996 44322   12224566654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.72  E-value=4.6e-05  Score=52.41  Aligned_cols=99  Identities=22%  Similarity=0.292  Sum_probs=74.4

Q ss_pred             cccCC-CCC-----CCchhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCC
Q 031005            2 TLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCY   65 (167)
Q Consensus         2 ~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~   65 (167)
                      +++++ +|.     .+...+..-..|+.|++++|++..     +...+..-++|+.|++++|.|.     .+.+.+..-.
T Consensus        47 ~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~  126 (197)
T 1pgv_A           47 NINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQ  126 (197)
T ss_dssp             ECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTC
T ss_pred             ECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCC
Confidence            45553 555     245667788899999999999982     4556677789999999999998     2345666677


Q ss_pred             CCCeEEcCCC---cCC-----ccchhHhcCCCcCEEEccCCcC
Q 031005           66 SLEELQANDN---LIG-----ELPASICNLIHLKSLCLNNNNI  100 (167)
Q Consensus        66 ~L~~l~l~~~---~~~-----~l~~~~~~~~~l~~l~l~~n~l  100 (167)
                      .|+.|+++++   .++     .+...+...++|..++++.|.+
T Consensus       127 tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          127 SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            8999999865   444     2345667778999999987764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.55  E-value=0.00024  Score=53.69  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             ccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCc
Q 031005           38 IGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ  115 (167)
Q Consensus        38 ~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~  115 (167)
                      |..+.+|+.+.+..+ +..+++ +|..+.+|+.+++..+ ++.++ ..|..+.+|+.+.+..+ +..+...+|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            445566666666543 555533 5666777777777543 55553 45666677777777555 6666666677777777


Q ss_pred             eEEcccC
Q 031005          116 NISLHNN  122 (167)
Q Consensus       116 ~l~l~~n  122 (167)
                      .+.+..+
T Consensus       370 ~i~lp~~  376 (394)
T 4fs7_A          370 KVELPKR  376 (394)
T ss_dssp             EEEEEGG
T ss_pred             EEEECCC
Confidence            7776543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.38  E-value=0.00045  Score=44.20  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=33.1

Q ss_pred             CEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005           22 ERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus        22 ~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      ..++.++++++  .+|..+.  .+++.|++++|.|+.+|+ .|..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35666666666  6664321  346666777777766644 4455666666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.34  E-value=0.00049  Score=51.98  Aligned_cols=106  Identities=15%  Similarity=0.294  Sum_probs=74.3

Q ss_pred             hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCC
Q 031005           13 DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIH   89 (167)
Q Consensus        13 ~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~   89 (167)
                      .+|..+..|+.+.+. +.++.++ ..|..+.+|+.+.+.. .++.+.+ +|.++.+|+.+.+..+ ++.+. ..|.++.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            347788999999986 5577776 5789999999999976 4777754 7899999999999655 66674 57889999


Q ss_pred             cCEEEccCCcCCCCchHHhhCCCCCceEEcccCCC
Q 031005           90 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI  124 (167)
Q Consensus        90 l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  124 (167)
                      |+.+++.++...   ...+..+..|+.+.+..+.+
T Consensus       359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            999999887531   12356677788887766544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.22  E-value=0.0014  Score=49.08  Aligned_cols=105  Identities=17%  Similarity=0.343  Sum_probs=78.8

Q ss_pred             hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC
Q 031005           15 LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK   91 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~   91 (167)
                      +.....++.+.+..+ +..+. ..|.....|+.+.+..+ ++.+.. .|..+..|+.+.+..+ +..++ ..|..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            445566666666543 44443 46677888888888664 666643 6778889999988654 55554 4677889999


Q ss_pred             EEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005           92 SLCLNNNNIGQIPANLLKDCKALQNISLHNN  122 (167)
Q Consensus        92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n  122 (167)
                      .+.+.++.+..++..+|.+|.+|+.+.+..+
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            9999999999999988999999999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.86  E-value=0.0028  Score=47.78  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=56.4

Q ss_pred             cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCC
Q 031005           37 TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL  114 (167)
Q Consensus        37 ~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L  114 (167)
                      .|.....++.+......   +++ .|..+.+|+.+.+..+ ++.++ ..|..+.+|+.+++.. .+..+...+|.+|.+|
T Consensus       271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTC
T ss_pred             ccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCC
Confidence            34444445444443322   222 4667778888888654 55553 4677888999999964 4888888889999999


Q ss_pred             ceEEcccCCCC
Q 031005          115 QNISLHNNPIS  125 (167)
Q Consensus       115 ~~l~l~~n~~~  125 (167)
                      +.+.+..+ +.
T Consensus       346 ~~i~lp~~-l~  355 (394)
T 4fs7_A          346 SNINFPLS-LR  355 (394)
T ss_dssp             CEECCCTT-CC
T ss_pred             CEEEECcc-cc
Confidence            99998766 44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 2e-09
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           +  N++  LP       RLERL    N L  +PE   +L+    L+V  N L+  P+   
Sbjct: 291 VSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPE 344

Query: 63  SCYSLEELQAN 73
              S+E+L+ N
Sbjct: 345 ---SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 1e-08
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 17  QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNL 76
               LE L++  N L  LP     L  L+    S N L  +PE      +L++L    N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERLIA---SFNHLAEVPELPQ---NLKQLHVEYNP 335

Query: 77  IGELPASICNLIHLKSLCLNN 97
           + E P    ++  L+   +N+
Sbjct: 336 LREFPDIPESVEDLR---MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 41  LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNI 100
             +L  LNVSNNKL  LP        LE L A+ N + E+P    NL   K L +  N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQNL---KQLHVEYNPL 336

Query: 101 GQIPANLLKDCKALQNISLHN 121
            + P       ++++++ +++
Sbjct: 337 REFPDIP----ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 6e-07
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 42  RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG 101
           R    L ++N  L SLPE       LE L A+ N + ELP    +L  L     N   + 
Sbjct: 38  RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 102 QIPANLLKDCKALQNISLHNNPISMDQFQQM 132
            +P  L     +   +       +    + +
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKII 125

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 64  CYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
             SLEEL  ++N + ELPA       L+ L  + N++ ++P       + L+ + +  NP
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELP----QNLKQLHVEYNP 335

Query: 124 IS 125
           + 
Sbjct: 336 LR 337

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+   ++SLP+    L   E L    N LT LPE   SL++L++ N +   L  LP  + 
Sbjct: 45  LNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 101

Query: 63  SCY 65
              
Sbjct: 102 YLG 104

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 21  LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80
              L +    L+ LPE    L +L     S N L  LPE      SL+ L  ++N +  L
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQ---SLKSLLVDNNNLKAL 93

Query: 81  PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 132
                 L +L         + ++  +       + N SL   P      + +
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 26/143 (18%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG--------------------- 39
           + L  N+I++L   L  L +L  L +  N ++ +    G                     
Sbjct: 246 LDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 40  SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 99
           +L+NL  L +  N +  +   + S   L+ L   +N + ++  S+ NL ++  L   +N 
Sbjct: 305 NLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ 362

Query: 100 IGQIPANLLKDCKALQNISLHNN 122
           I  +    L +   +  + L++ 
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L+GN++  +   L  L  L  L +  N ++ L   +  L  L  L +  N++ ++    G
Sbjct: 226 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAG 283

Query: 63  SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
              +       +    E  + I NL +L  L L  NNI  I    +     LQ +   NN
Sbjct: 284 --LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339

Query: 123 PIS 125
            +S
Sbjct: 340 KVS 342

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 6e-08
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 1   MTLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLKSLPE 59
           + +    IT++P   G    L  L + GN +T     ++  L NL  L +S N + ++  
Sbjct: 155 IRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 60  SIGSCYS-LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPAN------LLKDCK 112
              +    L EL  N+N + ++P  + +  +++ + L+NNNI  I +N            
Sbjct: 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 113 ALQNISLHNNPISMDQFQQ 131
           +   +SL +NP+   + Q 
Sbjct: 273 SYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 4/137 (2%)

Query: 28  GNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQ-ANDNLIGELPASIC 85
              L  +P+ +    +  LL++ NNK+  + +    +  +L  L   N+ +    P +  
Sbjct: 19  DLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 86  NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKK 145
            L+ L+ L L+ N + ++P  + K  + L+        +    F  +      E      
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 146 FDKQIDSNVMISSKGLN 162
               I++      K L+
Sbjct: 137 KSSGIENGAFQGMKKLS 153

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 30/160 (18%)

Query: 3   LDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES 60
           L  N+IT + D +   L  L  L ++ N ++ + P     L  L  L +S N+LK LPE 
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97

Query: 61  I-------------------------GSCYSLEELQANDNLIGELPASICNLIHLKSLCL 95
           +                              +E         G    +   +  L  + +
Sbjct: 98  MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 96  NNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 135
            + NI  IP  L     +L  + L  N I+      ++G 
Sbjct: 158 ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGL 194

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 8e-08
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 24  LSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 83
           L +    LT L   +  L  +  L++S+N+L++LP ++ +   LE LQA+DN +  +   
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 60

Query: 84  ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS 125
           + NL  L+ L L NN + Q  A   L  C  L  ++L  N + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3   LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG 62
           L   ++  L   + +     + ++    L   P+ + +    V+LN  ++   +L     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 63  SCYSLEELQANDNLI---GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
           +   L  L  ++N +    ++ + +    +LK L L+ N +             L+ + L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 120 HNNPIS 125
             N +S
Sbjct: 123 DGNSLS 128

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 73  NDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNP 123
           N+ + G LP  +  L  L SL ++ NN+ G+IP     + +     +  NN 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 1   MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKL 54
           + L  NRI  +LP  L QL  L  L++  N L       G+L+   +   +NNK 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 29  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ-ANDNLIGELPASIC 85
            +   LP+ +  L+ L  LNVS N L       G+    +    AN+  +   P   C
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 50  SNNKLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKSLCLNNNN 99
           +N    +LP+ +     L  L  + N L GE+P    NL         NN 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 42  RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLN 96
           ++L L  ++    KS+   +    S++E+  + N IG      L  +I +   L+    +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 97  NNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF 138
           +   G++   + +  + L    L    +   +          
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 10/97 (10%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 43  NLVLLNVSNNKL--KSLPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCL 95
           ++  L++   +L      E +      + ++ +D  + E     + +++     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 96  NNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 132
            +N +G +  + +       +  +    +        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 63  SCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIG-----QIPANLLKDCK 112
               L  L   D  + +     L A++     L+ L L+NN +G     Q+  ++ +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 113 ALQNISLHNNPISMDQFQQMEGFEE 137
            L+ + L++   S +   +++  E+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (78), Expect = 0.003
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 43  NLVLLNVSNNKL-----KSLPESIGSCYSLEELQANDNLIGE------LPASICNLIHLK 91
            L +L +++  +      SL  ++ + +SL EL  ++N +G+      + +       L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 92  SLCLNNNNIGQIPANLLKD 110
            L L +    +   + L+ 
Sbjct: 430 QLVLYDIYWSEEMEDRLQA 448

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 37 TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCL 95
           +  + + + +N     L +LP  +        L  ++NL+     A++     L  L L
Sbjct: 5  EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 96 NNNN 99
          +   
Sbjct: 63 DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 75  NLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
           NL       +  L +L +L L  N++  IP         L    LH NP
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 29  NMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDN 75
           N+       +  L NL  L +  N L ++P+     + L     + N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 51  NNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNN 98
           NN  +     +    +L+ L   +N +  +P        L    L+ N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 83  SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122
                     L ++   I  +P+  L++ K L+  S +N 
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 27  LGNMLTCLPETIG------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80
           LG+    +P  I       +    +  N+    +     +     S++++ AN++ I  +
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV 61

Query: 81  PASICNLIHLKSLCLNNNNI 100
              I  L ++  L LN N +
Sbjct: 62  QG-IQYLPNVTKLFLNGNKL 80

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 61  IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
           + +   L  L+A+DN I ++   + +L +L  + L NN I  +    L +   L  ++L 
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

Query: 121 N 121
           N
Sbjct: 226 N 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.98
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.78
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.62
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.01
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.4e-18  Score=108.85  Aligned_cols=115  Identities=25%  Similarity=0.341  Sum_probs=74.7

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|+++.++. +..+++|++|++++|.++.+|+.+..+++|+.+++++|.++.+| .+..+++|+.+++++|.++.+
T Consensus         3 L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~   80 (124)
T d1dcea3           3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS   80 (124)
T ss_dssp             EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             EEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCC
Confidence            4667777776653 66677777777777777777666667777777777777777664 366667777777777776655


Q ss_pred             c--hhHhcCCCcCEEEccCCcCC---CCchHHhhCCCCCceE
Q 031005           81 P--ASICNLIHLKSLCLNNNNIG---QIPANLLKDCKALQNI  117 (167)
Q Consensus        81 ~--~~~~~~~~l~~l~l~~n~l~---~~~~~~~~~~~~L~~l  117 (167)
                      +  ..+..+++++++++++|++.   ..+..+...+|+++.+
T Consensus        81 ~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            4  34566667777777777663   2334445556666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=1.3e-18  Score=118.74  Aligned_cols=124  Identities=23%  Similarity=0.385  Sum_probs=110.1

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcc-cc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTC-LP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~-l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~   78 (167)
                      +.++++++.+|..+.  +.+++|++++|+|+. ++ ..|..+++|+.|++++|.+..++ ..+..++.|++|++++|.++
T Consensus        14 ~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          14 DCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             ECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence            456788899987653  689999999999986 53 67899999999999999999874 57888999999999999999


Q ss_pred             ccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           79 ELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        79 ~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .++ ..|..+++|++|++++|.++.+++.+|..+++|+++++++|++.+.
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            885 5688899999999999999999998899999999999999999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.5e-18  Score=112.03  Aligned_cols=110  Identities=22%  Similarity=0.309  Sum_probs=68.6

Q ss_pred             hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEE
Q 031005           15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSL   93 (167)
Q Consensus        15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l   93 (167)
                      +.+..++++|++++|+|+.+++.+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++.++. .+..+++++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3455566666666666666655555566666666666666666 345666666666666666666643 33456666666


Q ss_pred             EccCCcCCCCch-HHhhCCCCCceEEcccCCCC
Q 031005           94 CLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        94 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ++++|.+..++. ..+..+++|+.+++++|+++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            666666655543 33566666666666666664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.3e-17  Score=104.94  Aligned_cols=104  Identities=31%  Similarity=0.440  Sum_probs=94.2

Q ss_pred             CEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCC
Q 031005           22 ERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIG  101 (167)
Q Consensus        22 ~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~  101 (167)
                      +.|++++|+++.++ .+..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+| .+..+++++++++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            57999999999886 488999999999999999999988999999999999999999986 4889999999999999998


Q ss_pred             CCch-HHhhCCCCCceEEcccCCCChh
Q 031005          102 QIPA-NLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus       102 ~~~~-~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .++. ..+..+++|+.+++++|+++..
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            8764 4578899999999999998743

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.8e-17  Score=116.08  Aligned_cols=125  Identities=30%  Similarity=0.369  Sum_probs=91.8

Q ss_pred             CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005            1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      |+|++|.|+.+| ..|..+++|++|++++|+++.++. +..+++|++|++++|.++..++.+..++.|+.++++++.+..
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC
T ss_pred             EECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccce
Confidence            467888888775 457888888888888888887753 456778888888888877766666667777777766665443


Q ss_pred             ------------------------cc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           80 ------------------------LP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        80 ------------------------l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                                              ++ ..+..++.++.+++++|.+..++...++.+++|+.|++++|.++.
T Consensus       115 ~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence                                    22 223445678888888888888877777888888888888888874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-16  Score=112.09  Aligned_cols=126  Identities=32%  Similarity=0.382  Sum_probs=93.7

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~   79 (167)
                      ++++|++..++..+..+++|+.|+++++.+..++ ..+..+.+++.+++.+|.+..+++ .+..++.++.+++++|.++.
T Consensus        83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            4455555555555555555666666666555543 344556667777777777776654 45678899999999999988


Q ss_pred             cc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           80 LP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++ ..+..+++|++|++++|.++++|.. +..+++|+.+++++|++.++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSG
T ss_pred             cCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCCCCCc
Confidence            85 5678899999999999999999987 457899999999999999763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=105.27  Aligned_cols=125  Identities=20%  Similarity=0.276  Sum_probs=108.3

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcCCc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~~~   79 (167)
                      |++++|+|+.++..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+++. +..+++|+.|++++|.++.
T Consensus        23 L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          23 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             EECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc
Confidence            57899999999877788999999999999999984 588899999999999999999764 5679999999999999988


Q ss_pred             cc--hhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEcccCCCChhh
Q 031005           80 LP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        80 l~--~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++  ..+..+++|+++++++|++...+.   .++..+++|+.||  +.+++.++
T Consensus       102 ~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~~e  153 (162)
T d1a9na_         102 LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKLKE  153 (162)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCHHH
T ss_pred             cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCHHH
Confidence            75  367889999999999999977763   4678999999987  55777553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=103.87  Aligned_cols=118  Identities=25%  Similarity=0.373  Sum_probs=65.8

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      ++.+++++.++ .++.+++|++|++++|+++.+++ +..+++|+.+++++|.+..++ .+..++.|+.++++++....++
T Consensus        46 ~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~  122 (199)
T d2omxa2          46 QADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID  122 (199)
T ss_dssp             ECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred             ECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc
Confidence            45566666653 36667777777777777776643 666777777777777666554 2555555666655555444332


Q ss_pred             hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                       .+..+++++.+++++|.+..++.  +..+++++.+++.+|.++
T Consensus       123 -~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         123 -PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred             -ccchhhhhHHhhhhhhhhccccc--cccccccccccccccccc
Confidence             23344445555555554444432  344444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-15  Score=109.81  Aligned_cols=127  Identities=31%  Similarity=0.439  Sum_probs=108.3

Q ss_pred             cccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~   78 (167)
                      +++++.+..++. .+....+|+.+++.+|+++.++ ..|..+++|+.|++++|.++.+++ .|..+++|+++++++|.+.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            566777766543 4667788899999999998886 567888899999999999998854 7788999999999999998


Q ss_pred             cc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           79 EL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        79 ~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      .+ |..|..+++++++++++|.+..++..+++.+++|+.+++++|++.++.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            66 678889999999999999999999888999999999999999998763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.4e-14  Score=99.78  Aligned_cols=120  Identities=30%  Similarity=0.405  Sum_probs=79.5

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      +++++.++.++ .+..+++|++|++++|+++.+++ +..+++|+.|++++|.++.++ .+..+++|+.+++.++.+..++
T Consensus        52 ~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~  128 (210)
T d1h6ta2          52 IANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDIN  128 (210)
T ss_dssp             ECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCG
T ss_pred             ECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-cccccccccccccccccccccc
Confidence            45666666654 36677778888888887777653 566777778888777777765 4666777777777777554332


Q ss_pred             ---------------------hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           82 ---------------------ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        82 ---------------------~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                                           ..+..+++|+++++++|.+..++.  ++.+++|+.|++++|.++.
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCC
Confidence                                 123445666677777776666654  5666777777777776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.3e-14  Score=99.05  Aligned_cols=120  Identities=20%  Similarity=0.402  Sum_probs=100.3

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|+++.+++ +..+++|++|++++|.+..++ .+..++.|+.++++++.+..++ .+..+++|+.+++++|.+..+
T Consensus        67 L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~  143 (199)
T d2omxa2          67 INFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI  143 (199)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             CccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhccc
Confidence            4678888887765 788999999999999888775 4778899999999988877653 467788999999999988876


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM  126 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  126 (167)
                      + .+..+++++.+++.+|.+..++.  ++.+++|+.|++++|+++.
T Consensus       144 ~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         144 S-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             c-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCC
Confidence            5 47788899999999999988875  7889999999999998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=2.8e-15  Score=101.91  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=95.1

Q ss_pred             CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-c-chhhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccC
Q 031005           21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-L-PESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNN   97 (167)
Q Consensus        21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~-~~~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~   97 (167)
                      .++++.++++++.+|..+.  +++++|++++|.++. + +..|..+++|+.|++++|.+..+ +..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4689999999999997653  689999999999985 4 34678999999999999999876 46788899999999999


Q ss_pred             CcCCCCchHHhhCCCCCceEEcccCCCChhhhccc
Q 031005           98 NNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM  132 (167)
Q Consensus        98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  132 (167)
                      |.+..+++.+|.++++|+.|++++|.++....+.+
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHh
Confidence            99999999889999999999999999986544333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.54  E-value=1.6e-16  Score=108.74  Aligned_cols=119  Identities=25%  Similarity=0.365  Sum_probs=104.1

Q ss_pred             CCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcC
Q 031005            8 ITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL   87 (167)
Q Consensus         8 i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~   87 (167)
                      +..++.++..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+|.....++.|+.|++++|.++.++ .+..+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l  114 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccc
Confidence            5567788999999999999999999985 588899999999999999988766666778999999999999874 47788


Q ss_pred             CCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChhh
Q 031005           88 IHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        88 ~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++|++|++++|.+..++. ..++.+++|+.|++++|++....
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            999999999999988865 45789999999999999987553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-14  Score=93.73  Aligned_cols=111  Identities=17%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCC-CCCccc-hhhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEE
Q 031005           17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN-KLKSLP-ESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSL   93 (167)
Q Consensus        17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n-~~~~~~-~~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l   93 (167)
                      .......++.+++.+..+|..+..+++++.|++.++ .++.++ +.|..+++|+.|++++|.++.+ +..|..++++++|
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334456788888888888888888999999999766 588885 4788999999999999999988 4678899999999


Q ss_pred             EccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           94 CLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        94 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                      ++++|.+++++..++... .++.+++++|++.++.
T Consensus        86 ~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred             eccCCCCcccChhhhccc-cccccccCCCcccCCc
Confidence            999999999999877655 6999999999998653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=4.8e-14  Score=101.84  Aligned_cols=123  Identities=26%  Similarity=0.409  Sum_probs=95.6

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCCc
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGE   79 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~~   79 (167)
                      ++.++++..+|..  .+++++.|++.+|..... +..+..++.++.|++++|.+..++ ..+..+++|++|++++|.++.
T Consensus       156 ~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         156 RIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             ECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred             ccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc
Confidence            3555666666543  356788888888877764 567788888899999998888774 467788899999999998888


Q ss_pred             cchhHhcCCCcCEEEccCCcCCCCchHHh------hCCCCCceEEcccCCCCh
Q 031005           80 LPASICNLIHLKSLCLNNNNIGQIPANLL------KDCKALQNISLHNNPISM  126 (167)
Q Consensus        80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~------~~~~~L~~l~l~~n~~~~  126 (167)
                      +|..+..+++|++|++++|.++.++...|      ....+|+.+++++|++..
T Consensus       234 lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            88888888899999999998877765433      456778889999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=7.9e-14  Score=95.90  Aligned_cols=105  Identities=27%  Similarity=0.362  Sum_probs=85.3

Q ss_pred             hCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEc
Q 031005           16 GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCL   95 (167)
Q Consensus        16 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l   95 (167)
                      ..+..++.|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++ .+..+++|+.+++
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccccccccccccc
Confidence            34678999999999999875 47889999999999999998864 678999999999999999886 4778889999999


Q ss_pred             cCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           96 NNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        96 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ++|.+..++.  +..++.++.++++.|.+.
T Consensus       120 ~~~~~~~~~~--l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         120 EHNGISDING--LVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             TTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccccccccccccccccc
Confidence            9888766654  556666666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=2.2e-14  Score=104.12  Aligned_cols=127  Identities=26%  Similarity=0.432  Sum_probs=103.2

Q ss_pred             CcccCCCCC---CCchhhhCCCCCCEEEeeC-CcCc-cccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCC
Q 031005            1 MTLDGNRIT---SLPDELGQLVRLERLSILG-NMLT-CLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQAND   74 (167)
Q Consensus         1 L~l~~~~i~---~l~~~~~~l~~L~~L~l~~-n~l~-~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~   74 (167)
                      |+++++.+.   .+|+++.++++|++|++++ |.++ .+|..+..+++|++|++++|.+..+ +..+..+..|+.+++..
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            467777776   4788999999999999986 6777 5899999999999999999999876 45678888999999999


Q ss_pred             CcCC-ccchhHhcCCCcCEEEccCCcC-CCCchHHhhCCCCC-ceEEcccCCCChhh
Q 031005           75 NLIG-ELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKAL-QNISLHNNPISMDQ  128 (167)
Q Consensus        75 ~~~~-~l~~~~~~~~~l~~l~l~~n~l-~~~~~~~~~~~~~L-~~l~l~~n~~~~~~  128 (167)
                      |.+. .+|..+..++.++++++++|.+ +.+|.. +..+..+ +.++++.|.+....
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC
T ss_pred             ccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccccccc
Confidence            8765 5688899999999999999988 467766 4555554 78888888776543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=94.38  Aligned_cols=99  Identities=18%  Similarity=0.171  Sum_probs=86.5

Q ss_pred             cccCCCCCCCchhhhCCCCCCEEEeeCC-cCcccc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCC
Q 031005            2 TLDGNRITSLPDELGQLVRLERLSILGN-MLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIG   78 (167)
Q Consensus         2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n-~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~   78 (167)
                      +.+++++.++|..+..++++++|++.++ .++.++ +.|..+++|+.|++++|.++.++ .+|..+++|+.|++++|.++
T Consensus        14 ~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             EecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            3456677778888889999999999876 599986 67999999999999999999994 57899999999999999999


Q ss_pred             ccchhHhcCCCcCEEEccCCcC
Q 031005           79 ELPASICNLIHLKSLCLNNNNI  100 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l~~n~l  100 (167)
                      .+|..+....++++|++++|++
T Consensus        94 ~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          94 SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccChhhhccccccccccCCCcc
Confidence            9987666666899999999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-14  Score=101.26  Aligned_cols=124  Identities=24%  Similarity=0.325  Sum_probs=105.1

Q ss_pred             CCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc
Q 031005            5 GNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP   81 (167)
Q Consensus         5 ~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~   81 (167)
                      .+.+..+ +..+..+++|++|++++|.+..++ ..+....+|+.+++.+|.++.+|+ .|..+++|+.|++++|.+..++
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            3445555 556888999999999999998765 567778899999999999998865 6778899999999999998774


Q ss_pred             -hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005           82 -ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ  128 (167)
Q Consensus        82 -~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  128 (167)
                       ..+..+++++++++++|.+..+++..+..+++++.+++++|.+....
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence             57788999999999999998887777899999999999999998543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=6.8e-13  Score=92.01  Aligned_cols=120  Identities=23%  Similarity=0.371  Sum_probs=78.0

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++.+++|+.++ .+..+++|++|++++|.++.+++ +..+++++.+++.+|.++.++ .+..++.|+.++++++....+
T Consensus        46 L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~  122 (227)
T d1h6ua2          46 LSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV  122 (227)
T ss_dssp             EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred             EECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            356778888774 57888888888888888887643 677778888888887777663 355666677776666643311


Q ss_pred             c---------------------hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           81 P---------------------ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        81 ~---------------------~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +                     ..+...++++++++++|.+...+.  ++.+++|+.|++++|.++
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             chhccccchhhhhchhhhhchhhhhccccccccccccccccccchh--hcccccceecccCCCccC
Confidence            0                     123344556666666666655544  556666666666666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=7.9e-13  Score=97.64  Aligned_cols=121  Identities=24%  Similarity=0.379  Sum_probs=97.7

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      ++++++.+..+++ +..+++|++|++++++++.+++ +..+..++.+.+..|.++.++ .+..++.++.+++++|.++.+
T Consensus       246 L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l  322 (384)
T d2omza2         246 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI  322 (384)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCC
T ss_pred             hccccCccCCCCc-ccccccCCEeeccCcccCCCCc-ccccccccccccccccccccc-ccchhcccCeEECCCCCCCCC
Confidence            3567788887754 7889999999999999988753 667788888888888887764 467788889999999888877


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      + .+..+++|++|++++|.++.++.  ++.+++|+.|++++|.++..
T Consensus       323 ~-~l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         323 S-PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             G-GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCBC
T ss_pred             c-ccccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCCcCCCC
Confidence            5 37778889999999998888764  78888999999999888753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=4.1e-16  Score=106.71  Aligned_cols=123  Identities=23%  Similarity=0.281  Sum_probs=101.3

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++|+|+.++ .+..+++|+.|++++|.++.++..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+
T Consensus        53 L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             EECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred             eECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccccccccccccccchhccc
Confidence            467888899886 588999999999999999998876666778999999999999874 577899999999999999887


Q ss_pred             c--hhHhcCCCcCEEEccCCcCCCCc----------hHHhhCCCCCceEEcccCCCChh
Q 031005           81 P--ASICNLIHLKSLCLNNNNIGQIP----------ANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        81 ~--~~~~~~~~l~~l~l~~n~l~~~~----------~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      +  ..+..+++|+.|++++|++...+          ..++..+|+|+.||  +.+|+.+
T Consensus       131 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~  187 (198)
T d1m9la_         131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTT
T ss_pred             cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHH
Confidence            5  46888999999999999873221          12367899999986  6667644

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.3e-12  Score=96.47  Aligned_cols=135  Identities=24%  Similarity=0.413  Sum_probs=108.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |+++++.++.++ .+..+++++.+++++|.++.+++ +..+++|+.++++++.++.+++ +..+..++.+.+..|.+..+
T Consensus       224 L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~  300 (384)
T d2omza2         224 LSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI  300 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC
T ss_pred             EECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc-cccccccccccccccccccc
Confidence            356778888765 57889999999999999988754 7788999999999999988754 67788899999999988876


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh-hhccccchHHHHHH
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD-QFQQMEGFEEFEAR  141 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~~  141 (167)
                      + .+..+++++++++++|.+..++.  +..+++|+.|++++|.++.. .+..++.++.+...
T Consensus       301 ~-~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~  359 (384)
T d2omza2         301 S-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG  359 (384)
T ss_dssp             G-GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             c-ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECC
Confidence            4 47778899999999999988865  78899999999999998743 24445555544443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=5.5e-12  Score=90.80  Aligned_cols=113  Identities=29%  Similarity=0.416  Sum_probs=97.6

Q ss_pred             chhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCcc-chhHhcCCC
Q 031005           12 PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGEL-PASICNLIH   89 (167)
Q Consensus        12 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~   89 (167)
                      +..+..+++|+.+++.+|.++.+|..+  +++++.+++.+|..... +..+..++.++.|++++|.+..+ +..+..+++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             ccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            445778889999999999998887543  57899999999988865 55788899999999999999877 467788999


Q ss_pred             cCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           90 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        90 l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      |++|++++|.+.++|.. +..+++|+.|++++|.++..
T Consensus       221 L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         221 LRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCC
T ss_pred             ceeeecccccccccccc-cccccCCCEEECCCCccCcc
Confidence            99999999999999875 78899999999999999854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.32  E-value=9e-13  Score=95.41  Aligned_cols=110  Identities=23%  Similarity=0.359  Sum_probs=95.4

Q ss_pred             CCCEEEeeCCcCc---cccccccCCCCCcEEEeeC-CCCC-ccchhhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEE
Q 031005           20 RLERLSILGNMLT---CLPETIGSLRNLVLLNVSN-NKLK-SLPESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSL   93 (167)
Q Consensus        20 ~L~~L~l~~n~l~---~l~~~~~~l~~L~~l~l~~-n~~~-~~~~~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l   93 (167)
                      +++.|+++++.++   .+|+.++.+++|++|++++ |.+. .+|+.++.+++|++|++++|.+..+ +..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            6889999999887   4789999999999999987 7777 7899999999999999999999765 5678889999999


Q ss_pred             EccCCcC-CCCchHHhhCCCCCceEEcccCCCChhhhc
Q 031005           94 CLNNNNI-GQIPANLLKDCKALQNISLHNNPISMDQFQ  130 (167)
Q Consensus        94 ~l~~n~l-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  130 (167)
                      +++.|.+ ..+|.. +..++.++.+++++|.+....+.
T Consensus       131 ~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCG
T ss_pred             ccccccccccCchh-hccCcccceeecccccccccccc
Confidence            9999988 556655 78999999999999998754333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=2.1e-11  Score=84.31  Aligned_cols=122  Identities=25%  Similarity=0.431  Sum_probs=95.5

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccc---------------------h
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP---------------------E   59 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~---------------------~   59 (167)
                      |++++|.+..+++ +..+++++++++++|.++.++ .+..+++|+.+.++++....++                     .
T Consensus        68 L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  145 (227)
T d1h6ua2          68 LELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS  145 (227)
T ss_dssp             EECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             eecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccccccccchhccccchhhhhchhhhhchhh
Confidence            4677788877653 788888999999888887764 4667777888887777544221                     1


Q ss_pred             hhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005           60 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        60 ~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                      .+..++.|+++++.+|.+...+ .+..+++|+.|++++|.+..++.  ++.+++|+.|++++|+++..
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             hhccccccccccccccccccch-hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCC
Confidence            2445677999999999887664 37889999999999999998876  78999999999999998854

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.3e-12  Score=86.95  Aligned_cols=135  Identities=16%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcc-cc-ccccCCCCCcEEEeeC-CCCCccc-hhhccCCCCCeEEcCCC
Q 031005            1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTC-LP-ETIGSLRNLVLLNVSN-NKLKSLP-ESIGSCYSLEELQANDN   75 (167)
Q Consensus         1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~-l~-~~~~~l~~L~~l~l~~-n~~~~~~-~~~~~l~~L~~l~l~~~   75 (167)
                      |++++|.|+.+|. .|.++++|++|++++|.+.. ++ ..|..++.++.+.+.. +.+..++ ..+..+++|+.+++.++
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh
Confidence            4677888887765 47888888888888887654 33 3455555555555543 3444332 23455555666655555


Q ss_pred             cCC--------------------------------------------------ccchhHhcCCCcCEE-EccCCcCCCCc
Q 031005           76 LIG--------------------------------------------------ELPASICNLIHLKSL-CLNNNNIGQIP  104 (167)
Q Consensus        76 ~~~--------------------------------------------------~l~~~~~~~~~l~~l-~l~~n~l~~~~  104 (167)
                      .+.                                                  .++.......++..+ ++.+|.+++++
T Consensus       114 ~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCC
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccccccc
Confidence            443                                                  222211222333333 44666777888


Q ss_pred             hHHhhCCCCCceEEcccCCCChhhhccccch
Q 031005          105 ANLLKDCKALQNISLHNNPISMDQFQQMEGF  135 (167)
Q Consensus       105 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l  135 (167)
                      ..+|..+++|+.|++++|+++......+.++
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            7778888999999999998885443444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.1e-10  Score=78.78  Aligned_cols=101  Identities=19%  Similarity=0.340  Sum_probs=79.8

Q ss_pred             ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCcc-c-hhhccCCCCCeEEcCC-CcCC
Q 031005            3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-P-ESIGSCYSLEELQAND-NLIG   78 (167)
Q Consensus         3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~-~-~~~~~l~~L~~l~l~~-~~~~   78 (167)
                      .++.+++.+|..+.  ..+++|++++|+++.+|. .|.++++|++|++++|.+... + ..|..++.++++.+.. +.+.
T Consensus        15 c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          15 CQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             EESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             EeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            34566788886543  579999999999999875 689999999999999988754 3 3678899999998754 4565


Q ss_pred             cc-chhHhcCCCcCEEEccCCcCCCCch
Q 031005           79 EL-PASICNLIHLKSLCLNNNNIGQIPA  105 (167)
Q Consensus        79 ~l-~~~~~~~~~l~~l~l~~n~l~~~~~  105 (167)
                      .+ +..+..+++|+++++++|.+...+.
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             ccccccccccccccccccchhhhccccc
Confidence            54 4567888999999999998866544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.00  E-value=1.3e-09  Score=78.91  Aligned_cols=95  Identities=29%  Similarity=0.365  Sum_probs=50.7

Q ss_pred             CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCc
Q 031005           20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN   99 (167)
Q Consensus        20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~   99 (167)
                      +++.|++++++++.+|+.   .++|++|++++|.++.+|+.   ..+|+.|++.+|.++.++..   .+.+++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            455666666666555542   24555666666666555543   23455556665555544321   1245566666666


Q ss_pred             CCCCchHHhhCCCCCceEEcccCCCC
Q 031005          100 IGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus       100 l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      +..+|.  ++.+++|+.++++++.+.
T Consensus       110 l~~lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         110 LEKLPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             cccccc--hhhhccceeecccccccc
Confidence            655554  345555666666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.98  E-value=2.7e-09  Score=77.15  Aligned_cols=94  Identities=35%  Similarity=0.441  Sum_probs=77.4

Q ss_pred             CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005            1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL   80 (167)
Q Consensus         1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l   80 (167)
                      |++++++++.+|+   ..++|++|++++|+++.+|..+   .+|+.|++++|.++.+++.   .+.|++|++++|.+..+
T Consensus        43 LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~l  113 (353)
T d1jl5a_          43 LELNNLGLSSLPE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL  113 (353)
T ss_dssp             EECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred             EEeCCCCCCCCCC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccccccc
Confidence            5788999999985   3578999999999999998654   5789999999999877542   24699999999999988


Q ss_pred             chhHhcCCCcCEEEccCCcCCCCc
Q 031005           81 PASICNLIHLKSLCLNNNNIGQIP  104 (167)
Q Consensus        81 ~~~~~~~~~l~~l~l~~n~l~~~~  104 (167)
                      |. ++.+++|++++++++.+...+
T Consensus       114 p~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         114 PE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             cc-hhhhccceeeccccccccccc
Confidence            75 567889999999988875443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=3.1e-09  Score=77.40  Aligned_cols=116  Identities=22%  Similarity=0.271  Sum_probs=83.7

Q ss_pred             chhhhCCCCCCEEEeeCCcCcc------ccccccCCCCCcEEEeeCCCCCc-----cchhhccCCCCCeEEcCCCcCCc-
Q 031005           12 PDELGQLVRLERLSILGNMLTC------LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE-   79 (167)
Q Consensus        12 ~~~~~~l~~L~~L~l~~n~l~~------l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~~l~l~~~~~~~-   79 (167)
                      ...+...+.+++|++++|+++.      +...+...++|+.|++++|.+..     +...+..+++|++|++++|.++. 
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            3445677889999999998863      23446678889999999998762     34556778889999999998863 


Q ss_pred             ----cchhHhc--CCCcCEEEccCCcCCC-----CchHHhhCCCCCceEEcccCCCChh
Q 031005           80 ----LPASICN--LIHLKSLCLNNNNIGQ-----IPANLLKDCKALQNISLHNNPISMD  127 (167)
Q Consensus        80 ----l~~~~~~--~~~l~~l~l~~n~l~~-----~~~~~~~~~~~L~~l~l~~n~~~~~  127 (167)
                          +...+..  ...+++|++++|.++.     +...+....+.|+.+++++|.+..+
T Consensus       259 g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                2233433  3578999999998843     2233224577899999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.8e-09  Score=74.65  Aligned_cols=43  Identities=19%  Similarity=0.070  Sum_probs=23.1

Q ss_pred             hcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccC-CCChh
Q 031005           85 CNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNN-PISMD  127 (167)
Q Consensus        85 ~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n-~~~~~  127 (167)
                      ..+++|++|++++|. ++......+..+++|+.|+++++ .++..
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            345666666666653 33222222556666667766663 45443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.1e-09  Score=75.66  Aligned_cols=141  Identities=24%  Similarity=0.350  Sum_probs=88.2

Q ss_pred             cccCCCCC--CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCC-CCCc--cchhhccCCCCCeEEcCCC
Q 031005            2 TLDGNRIT--SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNN-KLKS--LPESIGSCYSLEELQANDN   75 (167)
Q Consensus         2 ~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n-~~~~--~~~~~~~l~~L~~l~l~~~   75 (167)
                      +++++.+.  .+..-+..+++|++|++.++.++. .+..+..+++|+.|++++| .++.  +..-...+++|++|+++++
T Consensus        52 dLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          52 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            45555554  233446778888888888888764 4566777888888888885 5552  2233456788888888876


Q ss_pred             -cCCc--cchhHhc-CCCcCEEEccCCc--CCCC-chHHhhCCCCCceEEcccC-CCChhhhccc---cchHHHHHHH
Q 031005           76 -LIGE--LPASICN-LIHLKSLCLNNNN--IGQI-PANLLKDCKALQNISLHNN-PISMDQFQQM---EGFEEFEARR  142 (167)
Q Consensus        76 -~~~~--l~~~~~~-~~~l~~l~l~~n~--l~~~-~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~---~~l~~l~~~~  142 (167)
                       .++.  +...+.. .+.++.++++++.  ++.. -..+...+++|+.|+++++ .++...+..+   +.++.+...+
T Consensus       132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~  209 (284)
T d2astb2         132 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  209 (284)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             cccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCC
Confidence             3432  2223333 4678899888753  3221 2234577899999999986 4665444433   4444444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.9e-09  Score=79.44  Aligned_cols=105  Identities=18%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             CCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCcc-----chhHhc-C
Q 031005           21 LERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGEL-----PASICN-L   87 (167)
Q Consensus        21 L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~l-----~~~~~~-~   87 (167)
                      |++||+++++++.  +..-+..++++++|++++|.++     .+...+..+++|+.|++++|.++..     ...+.. .
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence            4455555555543  1223344455555555555544     1223344455555555555554311     111111 1


Q ss_pred             CCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccCCCC
Q 031005           88 IHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        88 ~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .++++|++++|.++....    .++..++.|+.+++++|.+.
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            245555555555532211    12334455555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.1e-09  Score=70.51  Aligned_cols=64  Identities=20%  Similarity=0.149  Sum_probs=35.7

Q ss_pred             ccCCCCCeEEcCCCcCCcc---chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005           62 GSCYSLEELQANDNLIGEL---PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        62 ~~l~~L~~l~l~~~~~~~l---~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      ..++.|+.|++++|.++.+   +..+..+++|+.|++++|.+.+++.-.......++.+++++|+++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            4456666666666666544   233455666666666666666555422223334666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.5e-08  Score=73.43  Aligned_cols=101  Identities=17%  Similarity=0.266  Sum_probs=77.9

Q ss_pred             CcccCCCCCC--CchhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhc-cCCCC
Q 031005            1 MTLDGNRITS--LPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIG-SCYSL   67 (167)
Q Consensus         1 L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~-~l~~L   67 (167)
                      ||+++++++.  +..-+..+++++.|++++|+++.     +...+...++|+.|++++|.++.     +...+. ...+|
T Consensus         7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L   86 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI   86 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred             EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCC
Confidence            5788899883  34446778999999999999872     45567889999999999998862     222332 23579


Q ss_pred             CeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCC
Q 031005           68 EELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIG  101 (167)
Q Consensus        68 ~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~  101 (167)
                      +.|++++|.++.     ++..+..+++|+++++++|.++
T Consensus        87 ~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          87 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CEEECCCCCccccccccccchhhccccccccccccccch
Confidence            999999999864     3456677899999999999874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.5e-09  Score=71.21  Aligned_cols=85  Identities=19%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             ccCCCCCcEEEeeCCCCCccc---hhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEEccCCcCCCCch-------H
Q 031005           38 IGSLRNLVLLNVSNNKLKSLP---ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPA-------N  106 (167)
Q Consensus        38 ~~~l~~L~~l~l~~n~~~~~~---~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~l~~n~l~~~~~-------~  106 (167)
                      +..+++|++|++++|+++.++   ..+..+++|+.|++++|.++.++. .......++.+++++|++.....       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            456899999999999999763   356789999999999999998864 33445679999999999954322       4


Q ss_pred             HhhCCCCCceEEcccCCC
Q 031005          107 LLKDCKALQNISLHNNPI  124 (167)
Q Consensus       107 ~~~~~~~L~~l~l~~n~~  124 (167)
                      ++..+|+|+.||  |..+
T Consensus       141 i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         141 IRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHTTSTTCCEET--TEEC
T ss_pred             HHHHCCCCCEEC--cCCC
Confidence            567899999886  4444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.46  E-value=1.4e-07  Score=68.38  Aligned_cols=90  Identities=26%  Similarity=0.354  Sum_probs=50.9

Q ss_pred             ccCCCCCcEEEeeCCCCCc------cchhhccCCCCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCch-
Q 031005           38 IGSLRNLVLLNVSNNKLKS------LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPA-  105 (167)
Q Consensus        38 ~~~l~~L~~l~l~~n~~~~------~~~~~~~l~~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~~-  105 (167)
                      +...++++.+++++|.+..      +...+..+++|+.|++++|.++.     +...+...++|++|++++|.++.... 
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3445667777777766652      12234556667777777776642     23345566677777777777643221 


Q ss_pred             ---HHhhC--CCCCceEEcccCCCChh
Q 031005          106 ---NLLKD--CKALQNISLHNNPISMD  127 (167)
Q Consensus       106 ---~~~~~--~~~L~~l~l~~n~~~~~  127 (167)
                         .++..  .+.|+.|++++|.+...
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChH
Confidence               11222  24577777777776644

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.40  E-value=6e-07  Score=58.68  Aligned_cols=109  Identities=15%  Similarity=0.165  Sum_probs=81.9

Q ss_pred             hCCCCCCEEEeeCC-cCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCc-----
Q 031005           16 GQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE-----   79 (167)
Q Consensus        16 ~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~-----   79 (167)
                      .+.+.|++|+++++ .++.     +...+...++|+.|++++|.+.     .+...+...+.|++|++++|.++.     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999975 4652     3345677789999999999887     234456678899999999998873     


Q ss_pred             cchhHhcCCCcCEEEccCCcCCCCc-------hHHhhCCCCCceEEcccCCC
Q 031005           80 LPASICNLIHLKSLCLNNNNIGQIP-------ANLLKDCKALQNISLHNNPI  124 (167)
Q Consensus        80 l~~~~~~~~~l~~l~l~~n~l~~~~-------~~~~~~~~~L~~l~l~~n~~  124 (167)
                      +...+...+++++|++++|.+..+.       ..++...+.|+.++++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            3345667789999999999875543       23355678899999877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.01  E-value=4.6e-06  Score=54.29  Aligned_cols=88  Identities=22%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             chhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccCCCCCeEEcCCCcCCcc-
Q 031005           12 PDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGEL-   80 (167)
Q Consensus        12 ~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~~l~l~~~~~~~l-   80 (167)
                      ...+...+.|++|++++|.+..     +...+...++|+.|++++|.+..     +-..+...++|++|++.+|.+..+ 
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCcc
Confidence            4456788899999999999872     33456677899999999999983     344567778999999998876543 


Q ss_pred             -------chhHhcCCCcCEEEccCCc
Q 031005           81 -------PASICNLIHLKSLCLNNNN   99 (167)
Q Consensus        81 -------~~~~~~~~~l~~l~l~~n~   99 (167)
                             ...+...++++.++++.+.
T Consensus       117 ~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         117 NQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                   3355567899999987664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=1.6e-05  Score=51.51  Aligned_cols=111  Identities=16%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             hhCCCCCCEEEeeC-CcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCC-----
Q 031005           15 LGQLVRLERLSILG-NMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIG-----   78 (167)
Q Consensus        15 ~~~l~~L~~L~l~~-n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~-----   78 (167)
                      ..+.+.|++|++++ +.++.     +...+...++|+.|++++|.+.     .+...+...+.++.+++.++.++     
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            35678999999997 45662     3345677899999999999987     23445667789999999999886     


Q ss_pred             ccchhHhcCCCcCEEEc--cCCcCCCC----chHHhhCCCCCceEEcccCCCC
Q 031005           79 ELPASICNLIHLKSLCL--NNNNIGQI----PANLLKDCKALQNISLHNNPIS  125 (167)
Q Consensus        79 ~l~~~~~~~~~l~~l~l--~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~  125 (167)
                      .+...+...++++.+++  ++|.++..    -..++...+.|+.++++.+...
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            23456667788887666  46667431    1234667889999999876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=2.8e-05  Score=50.26  Aligned_cols=89  Identities=24%  Similarity=0.261  Sum_probs=67.3

Q ss_pred             chhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEc--CCCcCC-
Q 031005           12 PDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQA--NDNLIG-   78 (167)
Q Consensus        12 ~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l--~~~~~~-   78 (167)
                      ..++...++|+.|++++|.++.     +...+...++++.+++++|.+.     .+...+...++|+.+++  ++|.++ 
T Consensus        39 ~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          39 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcH
Confidence            4456788999999999999873     3345677899999999999887     23456677888987666  456665 


Q ss_pred             ----ccchhHhcCCCcCEEEccCCcC
Q 031005           79 ----ELPASICNLIHLKSLCLNNNNI  100 (167)
Q Consensus        79 ----~l~~~~~~~~~l~~l~l~~n~l  100 (167)
                          .+...+...++++.|+++.+..
T Consensus       119 ~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         119 NVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                2455677889999999977654