Citrus Sinensis ID: 031028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MDRLPPCRSPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDPYDSHLR
cccccccccccccccccccEEEccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccc
cccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHccccccccHHHHHHccEEccccccEEccccccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcc
mdrlppcrspwtsanthlqaiiypsllqlqrgvtdtedKKQKAVYMERYrrrddeeqrqytdadiereeecgicmetnskivlpncnhamcLKCYREwrirsqscpfcrdslkrvnsgdlwvymdsrdiidsaTVTRENLRRLFLYidklpliipdnlfdpydshlr
mdrlppcrspwTSANTHLQAIiypsllqlqrgvtdtedkkqkavymeryrrrddeeqrqytdadiereeecGICMEtnskivlpncNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFlyidklpliipdnlfdpydshLR
MDRLPPCRSPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMeryrrrddeeqrqyTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDPYDSHLR
***********TSANTHLQAIIYPSLLQLQRGV***********************************EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDP******
**************NTHLQAIIYPSLLQLQRGVTD********************************EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYM***************LRRLFLYIDKLPLIIPDNLFDPYDSHL*
MDRLPPCRSPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERY*************ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDPYDSHLR
******C*SP*TSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRD*****QYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDPYDSHLR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDRLPPCRSPWTSANTHLQAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLFDPYDSHLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q6IV56222 RING finger protein 141 O yes no 0.449 0.337 0.351 1e-07
Q5ZM74230 RING finger protein 141 O yes no 0.467 0.339 0.340 4e-07
Q32L15230 RING finger protein 141 O yes no 0.365 0.265 0.391 6e-07
Q5R7K8230 RING finger protein 141 O yes no 0.365 0.265 0.391 6e-07
Q8WVD5230 RING finger protein 141 O yes no 0.365 0.265 0.391 6e-07
Q6IV57230 RING finger protein 141 O yes no 0.365 0.265 0.391 6e-07
Q99MB7230 RING finger protein 141 O yes no 0.365 0.265 0.391 6e-07
Q2XNS1231 RING finger protein 141 O yes no 0.365 0.264 0.391 6e-07
Q9ULV8474 Signal transduction prote no no 0.712 0.251 0.286 7e-06
Q13064507 Probable E3 ubiquitin-pro no no 0.311 0.102 0.382 1e-05
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 16/91 (17%)

Query: 36  TEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCY 95
           +ED  Q +++M R +        Q TD     EEEC ICM+  + ++LP C H+ C KC 
Sbjct: 125 SEDTCQASMWMGRVK--------QLTD-----EEECCICMDGKADLILP-CAHSFCQKCI 170

Query: 96  REWRIRSQSCPFCRDSLKRVNSGDLWVYMDS 126
            +W  +S++CP CR  +   N  + WV  D+
Sbjct: 171 DKWSGQSRNCPVCRIQVTAAN--ESWVMSDA 199

Danio rerio (taxid: 7955)
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1 Back     alignment and function description
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1 Back     alignment and function description
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1 Back     alignment and function description
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1 Back     alignment and function description
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2 Back     alignment and function description
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1 Back     alignment and function description
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3 Back     alignment and function description
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
224125288250 predicted protein [Populus trichocarpa] 0.886 0.592 0.885 5e-74
359497085242 PREDICTED: uncharacterized protein LOC10 0.886 0.611 0.885 5e-73
224079245247 predicted protein [Populus trichocarpa] 0.886 0.599 0.864 2e-72
449433859247 PREDICTED: uncharacterized protein LOC10 0.886 0.599 0.851 4e-70
356521345247 PREDICTED: probable E3 ubiquitin-protein 0.934 0.631 0.774 9e-70
388516203252 unknown [Lotus japonicus] 0.886 0.587 0.844 3e-69
356548739247 PREDICTED: uncharacterized protein LOC10 0.934 0.631 0.768 3e-69
363807754247 uncharacterized protein LOC100789769 [Gl 0.886 0.599 0.810 1e-67
356549351247 PREDICTED: uncharacterized protein LOC10 0.886 0.599 0.810 1e-66
255556015247 protein binding protein, putative [Ricin 0.886 0.599 0.858 2e-64
>gi|224125288|ref|XP_002329768.1| predicted protein [Populus trichocarpa] gi|222870830|gb|EEF07961.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 131/148 (88%), Positives = 140/148 (94%)

Query: 20  AIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNS 79
           A+IYPSLLQLQRGVTDTEDKKQKAV +ERYRRRDDEE RQ+TD DIEREEECGICME NS
Sbjct: 103 AVIYPSLLQLQRGVTDTEDKKQKAVCLERYRRRDDEEHRQHTDIDIEREEECGICMEMNS 162

Query: 80  KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTREN 139
           KIVLPNCNHAMCLKCYREWR RSQSCPFCRDSLKRVNSGDLWV+ D RDI+D+ATVTREN
Sbjct: 163 KIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDIVDTATVTREN 222

Query: 140 LRRLFLYIDKLPLIIPDNLFDPYDSHLR 167
           LRRLF+YIDKLPLI+PDNLFD YDSH+R
Sbjct: 223 LRRLFMYIDKLPLILPDNLFDLYDSHIR 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359497085|ref|XP_002269005.2| PREDICTED: uncharacterized protein LOC100244841 [Vitis vinifera] gi|147854404|emb|CAN81290.1| hypothetical protein VITISV_005312 [Vitis vinifera] gi|296084737|emb|CBI25878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224079245|ref|XP_002305807.1| predicted protein [Populus trichocarpa] gi|222848771|gb|EEE86318.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449433859|ref|XP_004134714.1| PREDICTED: uncharacterized protein LOC101207068 [Cucumis sativus] gi|449479335|ref|XP_004155572.1| PREDICTED: uncharacterized LOC101207068 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356521345|ref|XP_003529317.1| PREDICTED: probable E3 ubiquitin-protein ligase makorin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|388516203|gb|AFK46163.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356548739|ref|XP_003542757.1| PREDICTED: uncharacterized protein LOC100786183 [Glycine max] Back     alignment and taxonomy information
>gi|363807754|ref|NP_001241918.1| uncharacterized protein LOC100789769 [Glycine max] gi|255644748|gb|ACU22876.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356549351|ref|XP_003543057.1| PREDICTED: uncharacterized protein LOC100811330 [Glycine max] Back     alignment and taxonomy information
>gi|255556015|ref|XP_002519042.1| protein binding protein, putative [Ricinus communis] gi|223541705|gb|EEF43253.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:505006703242 AT5G58787 "AT5G58787" [Arabido 0.874 0.603 0.582 4.2e-47
TAIR|locus:2149750242 AIRP2 "ABA Insensitive RING Pr 0.850 0.586 0.542 1.4e-41
TAIR|locus:505006120260 AT1G13195 [Arabidopsis thalian 0.610 0.392 0.588 4.7e-32
TAIR|locus:2024026251 AT1G24440 [Arabidopsis thalian 0.616 0.410 0.563 1.1e-30
UNIPROTKB|Q5ZM74230 RNF141 "RING finger protein 14 0.383 0.278 0.417 5.6e-10
UNIPROTKB|I3LDC9231 RNF141 "Uncharacterized protei 0.335 0.242 0.406 1.3e-09
UNIPROTKB|Q32L15230 RNF141 "RING finger protein 14 0.335 0.243 0.406 2.2e-09
UNIPROTKB|F1Q4F0230 RNF141 "RING finger protein 14 0.335 0.243 0.406 2.2e-09
UNIPROTKB|Q8WVD5230 RNF141 "RING finger protein 14 0.335 0.243 0.406 2.2e-09
MGI|MGI:1914400230 Rnf141 "ring finger protein 14 0.335 0.243 0.406 2.2e-09
TAIR|locus:505006703 AT5G58787 "AT5G58787" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 88/151 (58%), Positives = 113/151 (74%)

Query:    19 QAIIYPSLLQLQRGVTDTEDKKQKAVYMXXXXXXXXXXXXXXTDADIEREEECGICMETN 78
             QA+I PSL QLQRGVTD +D KQK V                ++ +IEREEECGICME N
Sbjct:    95 QAVILPSLSQLQRGVTDIDDSKQKEVCKMRYRKKDESEM---SEIEIEREEECGICMEMN 151

Query:    79 SKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRE 138
             SK+VLPNC H++C+KCYR+WR RSQSCPFCRDSLKRV+SGDLW+++D  D ++   + RE
Sbjct:   152 SKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARE 211

Query:   139 NLRRLFLYIDKLPLIIPDNLF--DPYDSHLR 167
             N +RLF+YI+KLPL++PD ++   PYD H+R
Sbjct:   212 NQKRLFMYIEKLPLVVPDQVYASSPYDFHVR 242
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA;ISS
TAIR|locus:2149750 AIRP2 "ABA Insensitive RING Protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006120 AT1G13195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024026 AT1G24440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM74 RNF141 "RING finger protein 141" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDC9 RNF141 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q32L15 RNF141 "RING finger protein 141" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q4F0 RNF141 "RING finger protein 141" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WVD5 RNF141 "RING finger protein 141" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914400 Rnf141 "ring finger protein 141" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
PHA02929238 PHA02929, PHA02929, N1R/p28-like protein; Provisio 3e-10
cd0016245 cd00162, RING, RING-finger (Really Interesting New 5e-08
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 7e-08
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 1e-07
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 3e-06
smart0018440 smart00184, RING, Ring finger 8e-06
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 2e-04
PHA02926242 PHA02926, PHA02926, zinc finger-like protein; Prov 5e-04
COG5243491 COG5243, HRD1, HRD ubiquitin ligase complex, ER me 7e-04
pfam1267873 pfam12678, zf-rbx1, RING-H2 zinc finger 8e-04
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional Back     alignment and domain information 
 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 61  TDADIEREEECGICMET--NSKI------VLPNCNHAMCLKCYREWRIRSQSCPFCR 109
              +  +++EC ICME   + +I      +L NCNH  C++C   W+    +CP CR
Sbjct: 167 KLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
PHA02929238 N1R/p28-like protein; Provisional 99.32
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 99.29
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.29
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 99.27
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 99.21
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 99.2
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 99.2
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 99.18
PHA02926242 zinc finger-like protein; Provisional 99.18
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 99.12
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 99.08
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.03
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 99.03
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 99.02
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.01
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 99.0
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 98.97
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.95
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 98.95
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 98.89
PF1463444 zf-RING_5: zinc-RING finger domain 98.89
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.85
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.82
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 98.79
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 98.76
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.74
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.66
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 98.61
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 98.6
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 98.56
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 98.39
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.38
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 98.38
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 98.36
COG52191525 Uncharacterized conserved protein, contains RING Z 98.36
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 98.35
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 98.23
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 98.19
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 98.12
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 98.12
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 98.04
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 98.04
KOG149384 consensus Anaphase-promoting complex (APC), subuni 98.0
COG5152259 Uncharacterized conserved protein, contains RING a 97.89
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.84
KOG0297 391 consensus TNF receptor-associated factor [Signal t 97.81
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.75
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 97.68
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 97.68
PHA03096284 p28-like protein; Provisional 97.68
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 97.67
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 97.64
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 97.53
KOG1002 791 consensus Nucleotide excision repair protein RAD16 97.52
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 97.52
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 97.48
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 97.41
KOG2660 331 consensus Locus-specific chromosome binding protei 97.32
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.14
KOG4739 233 consensus Uncharacterized protein involved in syna 97.12
KOG0825 1134 consensus PHD Zn-finger protein [General function 97.09
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 97.05
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 96.91
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 96.89
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 96.73
KOG4445 368 consensus Uncharacterized conserved protein, conta 96.63
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 96.54
KOG1941518 consensus Acetylcholine receptor-associated protei 96.48
COG5236 493 Uncharacterized conserved protein, contains RING Z 96.42
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 96.3
COG5222427 Uncharacterized conserved protein, contains RING Z 96.25
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 96.21
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 96.17
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 96.17
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 96.09
PF04641260 Rtf2: Rtf2 RING-finger 95.99
PF10272358 Tmpp129: Putative transmembrane protein precursor; 95.61
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.57
KOG3002 299 consensus Zn finger protein [General function pred 95.55
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 95.18
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 95.1
KOG4367 699 consensus Predicted Zn-finger protein [Function un 94.97
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 94.96
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 94.79
PHA02862156 5L protein; Provisional 94.61
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 94.54
PF0874643 zf-RING-like: RING-like domain; InterPro: IPR01485 94.34
PHA02825162 LAP/PHD finger-like protein; Provisional 93.77
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 93.26
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 92.79
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 92.12
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 92.03
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 91.7
KOG0298 1394 consensus DEAD box-containing helicase-like transc 91.64
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 91.5
KOG1952 950 consensus Transcription factor NF-X1, contains NFX 91.03
KOG1940276 consensus Zn-finger protein [General function pred 90.71
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 90.61
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 89.55
COG5175 480 MOT2 Transcriptional repressor [Transcription] 89.31
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 88.81
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 87.94
KOG3053 293 consensus Uncharacterized conserved protein [Funct 87.88
KOG3899381 consensus Uncharacterized conserved protein [Funct 87.58
KOG03091081 consensus Conserved WD40 repeat-containing protein 86.59
KOG1812 384 consensus Predicted E3 ubiquitin ligase [Posttrans 85.17
KOG3039 303 consensus Uncharacterized conserved protein [Funct 85.08
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 84.95
KOG2113394 consensus Predicted RNA binding protein, contains 83.68
KOG1815 444 consensus Predicted E3 ubiquitin ligase [Posttrans 83.67
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 83.44
KOG3799169 consensus Rab3 effector RIM1 and related proteins, 83.1
KOG3113293 consensus Uncharacterized conserved protein [Funct 82.44
PF1456980 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. 81.29
PLN02638 1079 cellulose synthase A (UDP-forming), catalytic subu 80.15
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information 
Probab=99.32  E-value=9.5e-13  Score=104.16  Aligned_cols=56  Identities=34%  Similarity=0.921  Sum_probs=47.0

Q ss_pred             CCCCcccccccCCCc--------ceeCCCCCcccHhhHHHhcccCCcccccccccccccCCCce
Q 031028           66 EREEECGICMETNSK--------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLW  121 (167)
Q Consensus        66 ~~~~~C~IC~~~~~~--------~~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~~~~~~~~  121 (167)
                      ..+.+|+||++.+.+        +++++|||.||..||.+|+..+.+||+||.++..+.++..|
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~  235 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF  235 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence            456899999998653        36778999999999999999999999999999877665544

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>PHA03096 p28-like protein; Provisional Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] Back     alignment and domain information
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3053 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3899 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2ecn_A70 Solution Structure Of The Ring Domain Of The Human 6e-06
4epo_C149 Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE 2e-04
4ayc_B138 Rnf8 Ring Domain Structure Length = 138 2e-04
1fbv_A388 Structure Of A Cbl-Ubch7 Complex: Ring Domain Funct 3e-04
4ayc_A138 Rnf8 Ring Domain Structure Length = 138 3e-04
4a4c_A391 Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Comp 3e-04
4a4b_A391 Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Za 3e-04
2y1m_A389 Structure Of Native C-Cbl Length = 389 3e-04
3vgo_A394 Crystal Structure Of The N-Terminal Fragment Of Cbl 4e-04
4a49_A84 Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Len 7e-04
2k4d_A83 E2-C-Cbl Recognition Is Necessary But Not Sufficien 7e-04
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 68  EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 116
           EEEC ICM+  + ++LP C H+ C KC  +W  R ++CP CR  +   N
Sbjct: 15  EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149 Back     alignment and structure
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138 Back     alignment and structure
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In Ubiquitin-Protein Ligases Length = 388 Back     alignment and structure
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138 Back     alignment and structure
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391 Back     alignment and structure
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391 Back     alignment and structure
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl Length = 389 Back     alignment and structure
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B Length = 394 Back     alignment and structure
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Length = 84 Back     alignment and structure
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For Ubiquitination Activity Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 5e-20
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 5e-16
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 5e-13
2ecm_A55 Ring finger and CHY zinc finger domain- containing 3e-09
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 2e-08
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 4e-08
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 7e-08
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 8e-08
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 8e-08
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 2e-07
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 4e-07
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 7e-07
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 8e-07
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 9e-07
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 1e-06
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 3e-06
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 4e-06
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 5e-06
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 6e-06
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 2e-05
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 3e-05
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 3e-05
2ect_A78 Ring finger protein 126; metal binding protein, st 5e-05
2ea5_A68 Cell growth regulator with ring finger domain prot 6e-05
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 7e-05
1z6u_A150 NP95-like ring finger protein isoform B; structura 1e-04
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 2e-04
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 3e-04
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 5e-04
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 5e-04
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 5e-04
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 5e-04
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 6e-04
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 7e-04
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 7e-04
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
 Score = 77.8 bits (192), Expect = 5e-20
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 64  DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 117
            +  EEEC ICM+  + ++LP C H+ C KC  +W  R ++CP CR  +   N 
Sbjct: 11  QLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 99.49
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 99.46
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 99.45
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 99.45
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 99.44
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 99.43
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 99.43
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 99.43
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 99.42
2ysl_A73 Tripartite motif-containing protein 31; ring-type 99.41
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 99.41
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 99.4
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 99.4
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 99.4
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 99.39
2ecw_A85 Tripartite motif-containing protein 30; metal bind 99.39
2ecm_A55 Ring finger and CHY zinc finger domain- containing 99.39
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 99.39
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 99.37
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 99.37
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 99.37
2ect_A78 Ring finger protein 126; metal binding protein, st 99.37
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 99.37
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 99.36
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 99.36
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 99.36
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 99.36
2ysj_A63 Tripartite motif-containing protein 31; ring-type 99.34
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 99.34
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 99.33
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 99.32
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 99.32
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 99.32
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 99.29
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 99.28
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 99.27
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.26
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 99.26
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 99.26
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 99.25
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 99.25
1z6u_A150 NP95-like ring finger protein isoform B; structura 99.24
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 99.24
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 99.23
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 99.21
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 99.2
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 99.2
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 99.18
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 99.18
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 99.16
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 99.14
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 99.14
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 99.12
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 99.11
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.1
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.07
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 99.05
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 99.05
2f42_A179 STIP1 homology and U-box containing protein 1; cha 99.03
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 99.0
2ea5_A68 Cell growth regulator with ring finger domain prot 98.95
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 98.95
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.91
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 98.89
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.77
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 98.74
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 98.69
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 98.59
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 98.52
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 98.37
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 98.37
3nw0_A238 Non-structural maintenance of chromosomes element 97.62
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 96.33
2ko5_A99 Ring finger protein Z; lassa fever virus-Z, negati 94.21
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 93.86
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 90.33
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 85.93
1zbd_B134 Rabphilin-3A; G protein, effector, RABCDR, synapti 84.79
1weo_A93 Cellulose synthase, catalytic subunit (IRX3); stru 84.75
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 84.69
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 81.35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.49  E-value=9.8e-15  Score=93.58  Aligned_cols=51  Identities=31%  Similarity=0.767  Sum_probs=45.2

Q ss_pred             cCCCCCcccccccCCCcc-------eeCCCCCcccHhhHHHhcccCCccccccccccc
Q 031028           64 DIEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR  114 (167)
Q Consensus        64 ~~~~~~~C~IC~~~~~~~-------~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~~  114 (167)
                      ..+++..|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||..+..
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            345678999999998776       889999999999999999989999999998874
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Back     alignment and structure
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Back     alignment and structure
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 6e-10
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 8e-10
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 3e-09
d3dplr188 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S 1e-07
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 6e-07
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 6e-06
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 8e-06
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 9e-06
d1v87a_114 g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou 3e-05
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 7e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 8e-04
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 0.003
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 50.3 bits (120), Expect = 6e-10
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 65  IEREEECGICMET----NSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 112
           ++   EC +C+           LP C H    +C   W     +CP CR ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 99.5
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 99.49
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.42
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.37
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.37
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 99.35
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 99.33
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 99.32
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.31
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.31
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 99.28
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.27
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 99.24
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.05
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 99.0
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 98.34
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 88.5
d1weoa_93 Cellulose synthase A catalytic subunit 7, IRX3 {Th 88.45
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 83.83
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 83.12
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 82.41
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 81.2
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.50  E-value=5.6e-15  Score=89.54  Aligned_cols=48  Identities=27%  Similarity=0.752  Sum_probs=40.6

Q ss_pred             CCCCcccccccCCCcc----eeCCCCCcccHhhHHHhcccCCcccccccccc
Q 031028           66 EREEECGICMETNSKI----VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK  113 (167)
Q Consensus        66 ~~~~~C~IC~~~~~~~----~~~~CgH~fc~~Ci~~w~~~~~~CP~Cr~~i~  113 (167)
                      +++.+|+||++.+...    .++.|||.||..|+.+|++.+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567899999997642    34579999999999999999999999998763
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure