Citrus Sinensis ID: 031080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MDDTTSTTDTKPDNKTLTVNTNERSKVNNKKGGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKMAFGELWPLRDCFIYITLSTLQI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccEHHHHHHHHcccccccccEEEEEEcEccc
Coil and Loop (DISEMBL)
mddttsttdtkpdnktltvntnerskvnnkkgggrdddsdeeeyDAEAWNTLSKSFKQVQTVLDNNRSLIERVNenhlsripdnmsKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKmafgelwplrdcfIYITLSTLQI
Flexible Loop (DISEMBL)
mddttsttdtkpdnktltvntnerskvnnkkgggrdddsdeEEYDAEAWNTLSKSFKQVQTVLDNNRSLIErvnenhlsripdnmsKNVELIREINGNISKVVsiysdlsanfcnivsqrrrrmrmrmnnghrrraqrirrekmafgelwplrdcfIYITLSTLQI
Low Complexity Region (SEG)
MddttsttdtkpdnktLTVNTNERSKVNNKKGGGRdddsdeeeydaeaWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQrrrrmrmrmnnghrrrAQRIRREKMAFGELWPLRDCFIYITLSTLQI
Disordered region (IsUnstruct)
**********************************************************VQTVLD****LIE***************KNVELIREINGNISKVVSIYSDLSANFCNIVS***********************EKMAFGELWPLRDCFIYITLST***
Disordered Region (DISOPRED)
************************************************WNTLSKSFKQVQTVLDNNRSLIERVN******I**NMSKNVELIREINGNISKVVSIYSDLSA***********************************GELWPLRDCFIYITLSTLQI
Disordered Region (DISEMBL)
***********PDNKTLTVNTNERSK********************EAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKMAFGELWPLRDCFIYITLSTLQI
Disordered Region (DISPRO)
***********************RSKVN*************EEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRR**************AQRIRREKMAFGELWPLRDCFIYITLSTLQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDTTSTTDTKPDNKTLTVNTNERSKVNNKKGGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHRRRAQRIRREKMAFGELWPLRDCFIYITLSTLQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
O80877	125	Protein ELF4-LIKE 1 OS=Ar	yes	no	0.469	0.624	0.666	2e-23
O04211	111	Protein EARLY FLOWERING 4	no	no	0.445	0.666	0.608	7e-20
Q8S8F5	109	Protein ELF4-LIKE 3 OS=Ar	no	no	0.433	0.660	0.513	2e-15
Q570U6	114	Protein ELF4-LIKE 4 OS=Ar	no	no	0.475	0.692	0.455	8e-14
Q94BS8	119	Protein ELF4-LIKE 2 OS=Ar	no	no	0.451	0.630	0.466	1e-12

>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 60/78 (76%)

Query: 45  DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVS 104
           D E W+TLS  FK+ Q  LD NR LI+RVNENH+SRIPDN+S+NV LI EINGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 105 IYSDLSANFCNIVSQRRR 122
           IYSDLS NF     QRRR
Sbjct: 94  IYSDLSLNFAKKFDQRRR 111

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.
Arabidopsis thaliana (taxid: 3702)

>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 60/74 (81%)

Query: 41  EEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNIS 100
           E+  D   W  L ++F+QVQ+VLD NRSLI++VN+NH SR+ DNMSKNV LI+E+NGNIS
Sbjct: 18  EQGEDPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNIS 77

Query: 101 KVVSIYSDLSANFC 114
           KVV++YSDL+ +F 
Sbjct: 78  KVVNMYSDLNTSFS 91

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. Required for responsiveness to continuous red, by regulating phytochrome B (phyB) signaling (including during seedling de-etiolation) and gene expression. Mediates both entrainment to an environmental cycle and circadian rhythm sustainability under constant conditions. Controls flowering time. Necessary for light-induced expression of both CCA1 and LHY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 50/72 (69%)

Query: 43  EYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKV 102
           + D +   T  KSF QVQ +LD+NR LI  +N+NH S+IPDN+ +NV LIRE+N N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 103 VSIYSDLSANFC 114
             +Y DLS NF 
Sbjct: 75  AHLYVDLSNNFS 86

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 49/79 (62%)

Query: 39  SDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGN 98
            D    D +   +  KSF  VQ +LD NR LI  +N+NH S+ PDN+ +NV LI+E+N N
Sbjct: 10  GDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNN 69

Query: 99  ISKVVSIYSDLSANFCNIV 117
           I +V S+Y DLS +F   V
Sbjct: 70  IRRVASLYGDLSHSFARSV 88

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%)

Query: 43  EYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKV 102
           + D +      KSF QVQ +LD NR LI  +N+NH S+  D++ +NV LIRE+N NI  V
Sbjct: 18  QMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTV 77

Query: 103 VSIYSDLSANFCNIV 117
            S+Y DLS +F   V
Sbjct: 78  ASLYGDLSHSFARSV 92

Component of the central CCA1/LHY-TOC1 feedback loop in the circadian clock that promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
224106251	124	predicted protein [Populus trichocarpa]	0.650	0.870	0.565	6e-28
224059290	99	predicted protein [Populus trichocarpa]	0.548	0.919	0.714	4e-27
270356912	135	early flowering 4 [Pisum sativum]	0.572	0.703	0.589	1e-24
217793962	131	ELF4-like protein [Ipomoea nil]	0.463	0.587	0.701	2e-24
255569353	120	conserved hypothetical protein [Ricinus	0.602	0.833	0.643	2e-24
388497302	130	unknown [Medicago truncatula]	0.620	0.792	0.540	5e-24
357461215	120	Early flowering [Medicago truncatula] gi	0.620	0.858	0.540	6e-24
395146516	137	hypothetical protein [Linum usitatissimu	0.542	0.656	0.622	7e-24
225448425	145	PREDICTED: protein EARLY FLOWERING 4 [Vi	0.518	0.593	0.627	2e-23
224098596	122	predicted protein [Populus trichocarpa]	0.542	0.737	0.591	1e-22

>gi|224106251|ref|XP_002314100.1| predicted protein [Populus trichocarpa] gi|222850508|gb|EEE88055.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 86/122 (70%), Gaps = 14/122 (11%)

Query: 1   MDDTTSTTDTKPDNKTLTVNTNERSKVNNKKGGGRDDDSDEEEYDAEAWNTLSKSFKQVQ 60
           M++TT T   KP+ K          ++ N +GG +     EEE DAEAW+TLSKSFKQVQ
Sbjct: 1   MNNTTVTASPKPNKK----------RIKNDRGGAKK----EEECDAEAWDTLSKSFKQVQ 46

Query: 61  TVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQR 120
           +VLD+N  LI +VN NH S+IPDN+ K+V LIREINGNI+KV+SIYSDLS    NIV +R
Sbjct: 47  SVLDHNSDLIRQVNANHQSKIPDNLVKSVSLIREINGNITKVMSIYSDLSFKVSNIVEER 106

Query: 121 RR 122
           RR
Sbjct: 107 RR 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059290|ref|XP_002299809.1| predicted protein [Populus trichocarpa] gi|222847067|gb|EEE84614.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 76/91 (83%)

Query: 32  GGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVEL 91
           GG   +  +EEE D EAW+TLSKSFKQVQ+VLD+NR LI++VN NH S+IPDN+ KNV L
Sbjct: 9   GGDAKNGEEEEECDVEAWDTLSKSFKQVQSVLDHNRDLIQQVNANHQSKIPDNLVKNVSL 68

Query: 92  IREINGNISKVVSIYSDLSANFCNIVSQRRR 122
           IREINGNISKV+SIYSDLS NF NIV +RRR
Sbjct: 69  IREINGNISKVMSIYSDLSVNFSNIVQERRR 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270356912|gb|AAX47177.2| early flowering 4 [Pisum sativum]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 73/95 (76%)

Query: 33  GGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELI 92
           G   D  D E+ D EAW TL+KSF+QVQ+VLD NR++I++VNEN  SR+PDNM KNV LI
Sbjct: 39  GDYSDVEDAEDGDPEAWATLNKSFRQVQSVLDRNRAIIQQVNENQQSRMPDNMVKNVSLI 98

Query: 93  REINGNISKVVSIYSDLSANFCNIVSQRRRRMRMR 127
           +E+NGNISKV S+YSDL+++F NI  Q++R    R
Sbjct: 99  QELNGNISKVASLYSDLNSDFTNICHQQQRSSHTR 133

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217793962|gb|ACK56115.1| ELF4-like protein [Ipomoea nil]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 67/77 (87%)

Query: 45  DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVS 104
           D EAW TLS+SF+ VQTVLD NR+LI++VNENH S++P+N+++NV+LIREINGNISKVV 
Sbjct: 49  DQEAWETLSQSFRDVQTVLDQNRTLIQQVNENHQSKLPNNIARNVDLIREINGNISKVVG 108

Query: 105 IYSDLSANFCNIVSQRR 121
           +YSDLS NF  IV QRR
Sbjct: 109 MYSDLSGNFSGIVHQRR 125

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569353|ref|XP_002525644.1| conserved hypothetical protein [Ricinus communis] gi|223535080|gb|EEF36762.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 22  NERSKVNNKKGGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRI 81
           N  SK+N KK  G +++ +EE  D E W+TLS+SF+QVQ VLD NR LI +VNENH S++
Sbjct: 18  NSVSKMNTKKRDGYENEDEEEC-DVEVWDTLSRSFRQVQAVLDQNRDLINQVNENHQSKV 76

Query: 82  PDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRR 122
           PDN++KN+ LIREINGNISKV+SIYSDLS  F NIV QRRR
Sbjct: 77  PDNLTKNISLIREINGNISKVISIYSDLSLRFSNIVHQRRR 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497302|gb|AFK36717.1| unknown [Medicago truncatula]

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 80/111 (72%), Gaps = 8/111 (7%)

Query: 20  NTNERSKVNNKK--------GGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIE 71
           +TN RSK N ++             D  D E+ D EAW TL+KSF+QVQ+VLD NR++I+
Sbjct: 13  DTNHRSKKNQRRRRPSATPTNNDYSDVEDAEDGDPEAWQTLNKSFRQVQSVLDRNRAIIQ 72

Query: 72  RVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRR 122
           +VNEN  SR+PDNM KNV LI+E+NGNISKV S+YSDL+++F NI  Q++R
Sbjct: 73  QVNENQQSRMPDNMVKNVGLIQELNGNISKVASLYSDLNSDFTNICHQQQR 123

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461215|ref|XP_003600889.1| Early flowering [Medicago truncatula] gi|355489937|gb|AES71140.1| Early flowering [Medicago truncatula]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 80/111 (72%), Gaps = 8/111 (7%)

Query: 20  NTNERSKVNNKK--------GGGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIE 71
           +TN RSK N ++             D  D E+ D EAW TL+KSF+QVQ+VLD NR++I+
Sbjct: 3   DTNHRSKKNQRRRRPSATPTNNDYSDVEDAEDGDPEAWQTLNKSFRQVQSVLDRNRAIIQ 62

Query: 72  RVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRRR 122
           +VNEN  SR+PDNM KNV LI+E+NGNISKV S+YSDL+++F NI  Q++R
Sbjct: 63  QVNENQQSRMPDNMVKNVGLIQELNGNISKVASLYSDLNSDFTNICHQQQR 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146516|gb|AFN53671.1| hypothetical protein [Linum usitatissimum]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 69/90 (76%)

Query: 33  GGRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELI 92
           G  + +  +EE D EAW  L+KSF+Q Q+VLD NR LI +VNENH S+IP N+S+NV LI
Sbjct: 38  GDFESEEGQEECDKEAWVALNKSFRQAQSVLDQNRDLIHQVNENHQSKIPANLSRNVSLI 97

Query: 93  REINGNISKVVSIYSDLSANFCNIVSQRRR 122
            +INGNISKV+SIYSDLS NF N V +RRR
Sbjct: 98  NDINGNISKVMSIYSDLSVNFANAVQERRR 127

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448425|ref|XP_002270733.1| PREDICTED: protein EARLY FLOWERING 4 [Vitis vinifera] gi|297736609|emb|CBI25480.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 65/86 (75%)

Query: 34  GRDDDSDEEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIR 93
           G D   + EE  AE W T + SF+QVQ+VLD NR LI++VNENH S+IPDN+ KNV LI+
Sbjct: 37  GDDSGGEAEEGSAEVWETFNDSFRQVQSVLDRNRVLIQQVNENHQSKIPDNLVKNVALIQ 96

Query: 94  EINGNISKVVSIYSDLSANFCNIVSQ 119
           EINGNISKVVS+YSDLS NF  +  Q
Sbjct: 97  EINGNISKVVSLYSDLSTNFSGVFHQ 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098596|ref|XP_002311221.1| predicted protein [Populus trichocarpa] gi|222851041|gb|EEE88588.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%), Gaps = 3/93 (3%)

Query: 41  EEEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNIS 100
           E+E DAE W T + SF+QVQ+VLD NR LI++VNENH SR PDNM KNV LI+E+NGNIS
Sbjct: 32  EDEVDAEVWATFNNSFRQVQSVLDRNRVLIQQVNENHQSRTPDNMVKNVSLIQELNGNIS 91

Query: 101 KVVSIYSDLSANFCNIVSQRRRRMRMRMNNGHR 133
           KVV +YSDL++NF     QR    +   NNG +
Sbjct: 92  KVVGLYSDLNSNFSTAYHQRNHNGK---NNGKK 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2045673	125	ELF4-L1 "AT2G29950" [Arabidops	0.584	0.776	0.530	3e-21
TAIR|locus:2061226	111	ELF4 "AT2G40080" [Arabidopsis	0.391	0.585	0.661	9.2e-20
TAIR|locus:505006240	109	ELF4-L3 "AT2G06255" [Arabidops	0.379	0.577	0.571	1.3e-15
TAIR|locus:505006126	114	ELF4-L4 "AT1G17455" [Arabidops	0.403	0.587	0.507	6.2e-14
TAIR|locus:2030165	119	ELF4-L2 "AT1G72630" [Arabidops	0.385	0.537	0.531	5.6e-13

TAIR|locus:2045673 ELF4-L1 "AT2G29950" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/98 (53%), Positives = 61/98 (62%)

Query:    22 NERSKVNNKKGGGRXXXXXXXXXXXXXWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRI 81
             N RS   N+  G               W+TLS  FK+ Q  LD NR LI+RVNENH+SRI
Sbjct:    12 NNRSPEMNENDG-EDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRI 70

Query:    82 PDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQ 119
             PDN+S+NV LI EINGNIS+V+ IYSDLS NF     Q
Sbjct:    71 PDNVSRNVGLINEINGNISQVMEIYSDLSLNFAKKFDQ 108

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

TAIR|locus:2061226 ELF4 "AT2G40080" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 43/65 (66%), Positives = 57/65 (87%)

Query:    49 WNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSD 108
             W  L ++F+QVQ+VLD NRSLI++VN+NH SR+ DNMSKNV LI+E+NGNISKVV++YSD
Sbjct:    26 WENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSD 85

Query:   109 LSANF 113
             L+ +F
Sbjct:    86 LNTSF 90

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009648 "photoperiodism" evidence=IEP;IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

TAIR|locus:505006240 ELF4-L3 "AT2G06255" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query:    51 TLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLS 110
             T  KSF QVQ +LD+NR LI  +N+NH S+IPDN+ +NV LIRE+N N+ +V  +Y DLS
Sbjct:    23 TFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLS 82

Query:   111 ANF 113
              NF
Sbjct:    83 NNF 85

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006126 ELF4-L4 "AT1G17455" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    51 TLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLS 110
             +  KSF  VQ +LD NR LI  +N+NH S+ PDN+ +NV LI+E+N NI +V S+Y DLS
Sbjct:    22 SFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLS 81

Query:   111 ANFCNIV 117
              +F   V
Sbjct:    82 HSFARSV 88

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

TAIR|locus:2030165 ELF4-L2 "AT1G72630" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query:    54 KSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANF 113
             KSF QVQ +LD NR LI  +N+NH S+  D++ +NV LIRE+N NI  V S+Y DLS +F
Sbjct:    29 KSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSHSF 88

Query:   114 CNIV 117
                V
Sbjct:    89 ARSV 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       122   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.20u 0.10s 12.30t   Elapsed:  00:00:00
  Total cpu time:  12.20u 0.10s 12.30t   Elapsed:  00:00:00
  Start:  Fri May 10 10:06:55 2013   End:  Fri May 10 10:06:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009648 "photoperiodism" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam07011	89	pfam07011, DUF1313, Protein of unknown function (D	2e-33

>gnl|CDD|191668 pfam07011, DUF1313, Protein of unknown function (DUF1313)

 Score =  113 bits (284), Expect = 2e-33
 Identities = 47/78 (60%), Positives = 59/78 (75%)

Query: 45  DAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVS 104
           D + W T  +SF QVQ+VLD NR LI+ +N+NH SRIPDN+S+NV LIRE+NGNIS+VVS
Sbjct: 5   DGKVWQTFQRSFVQVQSVLDQNRLLIQEINQNHESRIPDNLSRNVGLIRELNGNISRVVS 64

Query: 105 IYSDLSANFCNIVSQRRR 122
           +YSDLS +F   V   R 
Sbjct: 65  LYSDLSGSFSRSVRASRE 82

This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	100.0
PF05030	65	SSXT: SSXT protein (N-terminal region); InterPro:	84.28

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=100.00  E-value=5.6e-49  Score=290.39  Aligned_cols=82  Identities=57%  Similarity=0.893  Sum_probs=79.5

Q ss_pred             cccCHHHHHHHHHhHHHHHHHhhhhHHHHHHHhhhcccCCCCcchhhHHHHHHHhhhHHHHHHHhhhhhhhHHHHHhhhh
Q 031080           42 EEYDAEAWNTLSKSFKQVQTVLDNNRSLIERVNENHLSRIPDNMSKNVELIREINGNISKVVSIYSDLSANFCNIVSQRR  121 (166)
Q Consensus        42 e~~D~kvw~tfqksF~QVQ~ILDqNRlLInEINqNHeSriPDnLsRNV~LIRELN~NIskVV~LYsDLS~sFs~~v~qrr  121 (166)
                      +++|+|+|++|++||+|||+||||||+||+|||||||||+||+|+|||+||||||+||+|||+||+|||++|+++|++++
T Consensus         1 ~~~d~~~~~tf~~sF~qVQ~iLDqNR~LI~eINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~sFs~~~~~~~   80 (87)
T PF07011_consen    1 EQGDGKVWQTFQKSFVQVQSILDQNRLLINEINQNHESRIPDNLSRNVGLIRELNGNISRVVDLYSDLSSSFSKSVEQSS   80 (87)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccCCchhhHhHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hc
Q 031080          122 RR  123 (166)
Q Consensus       122 ~~  123 (166)
                      ..
T Consensus        81 ~g   82 (87)
T PF07011_consen   81 EG   82 (87)
T ss_pred             cc
Confidence            64

The function of this family is unknown.

>PF05030 SSXT: SSXT protein (N-terminal region); InterPro: IPR007726 SSXT (also known as SYT or SS18) appears to function synergistically with RBM14 as a transcriptional coactivator []

Probab=84.28  E-value=0.98  Score=32.30  Aligned_cols=39  Identities=28%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             HHHHHHhhhhHHHHHHHhhhcc-cCCCCcchhhHHHHHHHhhhH
Q 031080           57 KQVQTVLDNNRSLIERVNENHL-SRIPDNMSKNVELIREINGNI   99 (166)
Q Consensus        57 ~QVQ~ILDqNRlLInEINqNHe-SriPDnLsRNV~LIRELN~NI   99 (166)
                      .+||.+||.|.-||+-|.+++. .|.+|    =|..-.-|..|+
T Consensus         9 ~~IQk~LdEN~~LI~~I~e~qn~Gr~~E----c~qyq~~LhrNL   48 (65)
T PF05030_consen    9 EQIQKMLDENDQLIQCIQEYQNKGRAQE----CVQYQQILHRNL   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHH
Confidence            5899999999999999999885 23332    334445555554

The SSXT protein is involved in synovial sarcoma in humans. A SYT-SSX fusion gene resulting from the chromosomal translocation t(X;18) (p11;q11) is characteristic of synovial sarcomas. This translocation fuses the SSXT (SYT) gene from chromosome 18 to either of two homologous genes at Xp11, SSX1 or SSX2 []. This entry also includes SS18-like protein 1, a transcriptional activator which is required for calcium-dependent dendritic growth and branching in cortical neurons [],[].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00