Citrus Sinensis ID: 031091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Secondary Structure (PSIPRED)
cccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccHHcHEEEEEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHccccccccccHHHHccc
Coil and Loop (DISEMBL)
MADNPTEGILEQLRLGVAKFElvsspvasisnpnsqtfptafhrdsnnlffarigpplgggspamkKVERYSVQRVTGDGRCLFRALVKGMALnkgitlnsrderedADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRigrsdfwggeSELLVSTC
Flexible Loop (DISEMBL)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGmalnkgitlnsrderedadDLRMAVKEvicdsgserrqYEEALIAITIDESLKRYCQRIgrsdfwggesellvstc
Low Complexity Region (SEG)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered region (IsUnstruct)
*********LEQLRLGVAKFELV*****************AFHRDSNNLFFARIGPPL********KVERYSVQRVTGDGRCLFRALVKGMALNKGITL*************MAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGE********
Disordered Region (DISOPRED)
**********EQLRLGVAKFELVSSPVA***************************************VERYSVQRVTGDGRCLFRALVKGMAL****************DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISEMBL)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISPRO)
****PTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	no	no	0.524	0.274	0.354	4e-07

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 71  YSVQRVTGDGRCLFRALVKGMALNKG-ITLNSRDEREDADDLRMAVKEVICDSGSERRQY 129
           YS+  + GDGRCLFR++  G  L  G +    + +RE AD+LR  V     D   +RRQ 
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQE 223

Query: 130 EEALIAITIDESLKRYCQRIGRSDFWGGESELLVST 165
            E  +    D     Y ++I     WGGE EL +++
Sbjct: 224 TEWFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
255573893	162	conserved hypothetical protein [Ricinus	0.963	0.987	0.708	3e-60
356504295	226	PREDICTED: OTU domain-containing protein	0.981	0.721	0.656	1e-54
225440598	226	PREDICTED: uncharacterized protein LOC10	0.927	0.681	0.708	1e-52
388523101	225	unknown [Lotus japonicus]	0.933	0.688	0.685	2e-52
297827355	233	hypothetical protein ARALYDRAFT_482809 [	0.927	0.660	0.672	9e-50
146454972	138	putative auxin-regulated protein [Sonner	0.825	0.992	0.7	1e-49
30687357	234	cysteine proteinase-like protein [Arabid	0.975	0.692	0.640	3e-49
146454974	138	putative auxin-regulated protein [Sonner	0.825	0.992	0.692	4e-49
146454978	138	putative auxin-regulated protein [Sonner	0.825	0.992	0.685	1e-48
357468595	229	OTU-like cysteine protease family protei	0.927	0.672	0.643	8e-47

>gi|255573893|ref|XP_002527865.1| conserved hypothetical protein [Ricinus communis] gi|223532716|gb|EEF34496.1| conserved hypothetical protein [Ricinus communis]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/168 (70%), Positives = 135/168 (80%), Gaps = 8/168 (4%)

Query: 1   MADNPT--EGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPL 58
           MA  P   + ILEQL+ GVAKFE+VSSP  SIS        T F   +++ FFARIGP L
Sbjct: 1   MAAKPVNDKNILEQLKHGVAKFEIVSSPDPSISTW------TPFFAHTSHRFFARIGPSL 54

Query: 59  GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEV 118
             GSPA KK+ERYSVQ+VTGDGRCLFRALVKGMALNKG++LN R+ER+DADDLRMAVKEV
Sbjct: 55  SSGSPATKKLERYSVQKVTGDGRCLFRALVKGMALNKGVSLNPREERDDADDLRMAVKEV 114

Query: 119 ICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC 166
           +C+   ERRQYEEALIAI++DESLKRYCQRIGR DFWGGESELL  TC
Sbjct: 115 LCNGDKERRQYEEALIAISVDESLKRYCQRIGRPDFWGGESELLECTC 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504295|ref|XP_003520932.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/166 (65%), Positives = 129/166 (77%), Gaps = 3/166 (1%)

Query: 1   MADNP---TEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPP 57
           MA  P    E +LEQLR G AKFE+VSSPV S++ P ++        +S+ + FARIG  
Sbjct: 1   MARKPFKFNEDVLEQLRNGTAKFEVVSSPVPSVAAPPNRNTSLFGIGNSSTVLFARIGSS 60

Query: 58  LGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKE 117
            GG SPAMKK+E +SVQ+VTGDGRCLFRALVKGMA NKG TLN R+ERE+AD+LRMAVKE
Sbjct: 61  FGGHSPAMKKLEHFSVQKVTGDGRCLFRALVKGMAYNKGTTLNQREERENADELRMAVKE 120

Query: 118 VICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
            IC++  ER+ YEEALIAIT+DE +KRYCQRI R DFWGGESELLV
Sbjct: 121 AICENEGERKLYEEALIAITVDEPIKRYCQRIVRPDFWGGESELLV 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440598|ref|XP_002277660.1| PREDICTED: uncharacterized protein LOC100244154 isoform 1 [Vitis vinifera] gi|297740254|emb|CBI30436.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 132/158 (83%), Gaps = 4/158 (2%)

Query: 6   TEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAM 65
            E +L+QL+ G A+FELVSSPV SIS+P   T  T    ++   FFARIG  LGG SPAM
Sbjct: 9   NEAVLQQLKHGRARFELVSSPVPSISSPKLPTLST----ENGPQFFARIGSSLGGASPAM 64

Query: 66  KKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSE 125
           KKV+RYSVQ+VTGDGRC+FRALVKGMA NKGI ++SR+ER+DAD+LRMAVKE+IC +G E
Sbjct: 65  KKVQRYSVQKVTGDGRCMFRALVKGMAFNKGIAISSREERDDADELRMAVKEIICGNGKE 124

Query: 126 RRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
           RRQYEEAL+AIT++ESLKRYCQRI R DFWGGESELLV
Sbjct: 125 RRQYEEALVAITVEESLKRYCQRIERPDFWGGESELLV 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523101|gb|AFK49612.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/162 (68%), Positives = 127/162 (78%), Gaps = 7/162 (4%)

Query: 6   TEGILEQLRLGVAKFELVS-SPVASIS---NPNSQTFPTAFHRDSNNLFFARIGPPLGGG 61
            E ILEQ+R G AKFELVS SPV SI+   N N+  F      +S++LFFAR+G    G 
Sbjct: 7   NEDILEQMRNGSAKFELVSDSPVPSIAALPNRNASFFGVG---NSSSLFFARVGSLFSGQ 63

Query: 62  SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD 121
           SPAMKKVER SV +VTGDGRCLFRALVKGMA NKG+ LN R+ERE AD+LRMAVKEVIC+
Sbjct: 64  SPAMKKVERLSVHKVTGDGRCLFRALVKGMAHNKGVALNQREERESADELRMAVKEVICE 123

Query: 122 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
           +  ER+ YEEALIAIT+DE L RYC+RI RSDFWGGESELLV
Sbjct: 124 NEGERKLYEEALIAITVDEPLPRYCKRIVRSDFWGGESELLV 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827355|ref|XP_002881560.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata] gi|297327399|gb|EFH57819.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 107/159 (67%), Positives = 127/159 (79%), Gaps = 5/159 (3%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAFH---RDSNNLFFARIGPPLGGGSPA 64
           ILEQLR G A+FELVSSP ASIS+  S    P +F    + ++ +FFARIG  +   SPA
Sbjct: 11  ILEQLRNGFARFELVSSPTASISDSISSISLPASFMSATKGNSYVFFARIGSSMNR-SPA 69

Query: 65  MKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGS 124
            KKVE+Y+V RV GDGRCLFRALVKGMA NKG+TLN + ER+DAD+LRMAVKEVIC+   
Sbjct: 70  AKKVEQYAVDRVKGDGRCLFRALVKGMAFNKGVTLNPQRERDDADELRMAVKEVICNDPK 129

Query: 125 ERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
           E+ +Y+EAL+AIT+DESLKRYCQRIGR DFWGGESELLV
Sbjct: 130 EKEKYKEALVAITVDESLKRYCQRIGRHDFWGGESELLV 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454972|gb|ABQ42152.1| putative auxin-regulated protein [Sonneratia alba] gi|241865252|gb|ACS68704.1| putative auxin-regulated protein [Sonneratia alba] gi|241865485|gb|ACS68775.1| putative auxin-regulated protein [Sonneratia alba]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 117/140 (83%), Gaps = 3/140 (2%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG SPAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQ 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L +R+ER+DAD+LRMAVKE+ICDSG +RRQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLGAREERDDADELRMAVKEIICDSGEDRRQ 118

Query: 129 YEEALIAITIDESLKRYCQR 148
           YEEAL+AITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687357|ref|NP_850290.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|26449806|dbj|BAC42026.1| putative auxin-regulated protein [Arabidopsis thaliana] gi|28950787|gb|AAO63317.1| At2g38025 [Arabidopsis thaliana] gi|330254387|gb|AEC09481.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078832|gb|AFS88947.1| OTU-containing deubiquitinating enzyme 3 [Arabidopsis thaliana]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 129/167 (77%), Gaps = 5/167 (2%)

Query: 1   MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAF---HRDSNNLFFARIGP 56
           +  +    ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++ +FFARI  
Sbjct: 3   LKSSSNNNILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINS 62

Query: 57  PLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVK 116
            +   SPA KKVE+Y+V RV GDGRCLFRALVKGMA NKGITLN + ER+DAD+LRMAVK
Sbjct: 63  SMNR-SPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDADELRMAVK 121

Query: 117 EVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
           EVIC+   ER +Y+EAL+AIT+DESLKR+CQRIGR DFWGGESELLV
Sbjct: 122 EVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454974|gb|ABQ42153.1| putative auxin-regulated protein [Sonneratia caseolaris]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 117/140 (83%), Gaps = 3/140 (2%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG SPAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQ 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L++ +ER+DAD+LRMAVKE+ICDSG +RRQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTWEERDDADELRMAVKEIICDSGEDRRQ 118

Query: 129 YEEALIAITIDESLKRYCQR 148
           YEEAL+AITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia caseolaris

Species: Sonneratia caseolaris

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454978|gb|ABQ42155.1| putative auxin-regulated protein [Sonneratia apetala]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 117/140 (83%), Gaps = 3/140 (2%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG  PAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKPPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQ 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L++R+ER+DAD+LRMAVKE+ICDSG ++RQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTREERDDADELRMAVKEIICDSGEDQRQ 118

Query: 129 YEEALIAITIDESLKRYCQR 148
           YEEAL+AITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia apetala

Species: Sonneratia apetala

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468595|ref|XP_003604582.1| OTU-like cysteine protease family protein expressed [Medicago truncatula] gi|355505637|gb|AES86779.1| OTU-like cysteine protease family protein expressed [Medicago truncatula] gi|388501534|gb|AFK38833.1| unknown [Medicago truncatula]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 128/160 (80%), Gaps = 6/160 (3%)

Query: 7   EGILEQLRLGVAKFELVSSPVASIS---NPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
           + IL+QL+ G AKFE+VSSPVAS+    N NS  F      + +  FFARIG  +GG S 
Sbjct: 13  DNILKQLKDGTAKFEIVSSPVASVVSRFNRNSSLFGVG---NCSTHFFARIGSSIGGQST 69

Query: 64  AMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSG 123
           AMKK+ER+SVQ+VTGDGRCLFRALVKGMA NKG+ LN R+ERE+AD+LRMAVKE IC++ 
Sbjct: 70  AMKKLERFSVQKVTGDGRCLFRALVKGMAHNKGMALNQREERENADELRMAVKEAICENV 129

Query: 124 SERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
            +R+ YEEA+IA+T+DE L+RYC+RIG+ DFWGGESELLV
Sbjct: 130 GDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLV 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.975	0.692	0.640	5.8e-50
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.795	0.416	0.308	4e-08

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 107/167 (64%), Positives = 129/167 (77%)

Query:     1 MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAF---HRDSNNLFFARIGP 56
             +  +    ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++ +FFARI  
Sbjct:     3 LKSSSNNNILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINS 62

Query:    57 PLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVK 116
              +   SPA KKVE+Y+V RV GDGRCLFRALVKGMA NKGITLN + ER+DAD+LRMAVK
Sbjct:    63 SMNR-SPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDADELRMAVK 121

Query:   117 EVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
             EVIC+   ER +Y+EAL+AIT+DESLKR+CQRIGR DFWGGESELLV
Sbjct:   122 EVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 45/146 (30%), Positives = 67/146 (45%)

Query:    22 LVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVER-YSVQRVTGDG 80
             +VS  V   S   S    ++  +D+NN+           G    K+V   YS+  + GDG
Sbjct:   122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNG----KRVYTDYSIIGIPGDG 177

Query:    81 RCLFRALVKGMALNKG-ITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITID 139
             RCLFR++  G  L  G +    + +RE AD+LR  V     D   +RRQ  E  +    D
Sbjct:   178 RCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQETEWFVEGDFD 233

Query:   140 ESLKRYCQRIGRSDFWGGESELLVST 165
                  Y ++I     WGGE EL +++
Sbjct:   234 T----YVRQIRDPHVWGGEPELFMAS 255


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       166   0.00097  107 3  11 22  0.39    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.65u 0.15s 15.80t   Elapsed:  00:00:01
  Total cpu time:  15.65u 0.15s 15.80t   Elapsed:  00:00:01
  Start:  Fri May 10 10:39:33 2013   End:  Fri May 10 10:39:34 2013

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	4e-04

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 77  TGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAI 136
            GDG CLF A+   +             +E  D+LR AV E +      R  +E+     
Sbjct: 1   PGDGNCLFHAVSDQLGDA--------GRQELHDELREAVVEYL---RENREDFEKF---- 45

Query: 137 TIDESLKRYCQRIGRSDFWGGESELLV 163
            ++E    Y + I +   WGG  E+  
Sbjct: 46  -LEEDENEYYKWISKDGAWGGNIEIFA 71

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.91
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.73
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.67
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.01
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.72
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.57
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.07
KOG3991	256	consensus Uncharacterized conserved protein [Funct	97.59
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	81.55

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.9e-25  Score=188.59  Aligned_cols=88  Identities=24%  Similarity=0.474  Sum_probs=77.2

Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhh-----hhhhHH
Q 031091           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAIT-----IDESLK  143 (166)
Q Consensus        69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~-----~~e~fe  143 (166)
                      ++|.+++||+||||||+||+|||..+.+..+       ++..||...|+||+   +|.++|.||+...+     ..++|+
T Consensus       157 ~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~-------~v~kLR~~~a~Ymr---~H~~df~pf~~~eet~d~~~~~~f~  226 (302)
T KOG2606|consen  157 RGLKMFDIPADGHCLYAAISHQLKLRSGKLL-------SVQKLREETADYMR---EHVEDFLPFLLDEETGDSLGPEDFD  226 (302)
T ss_pred             ccCccccCCCCchhhHHHHHHHHHhccCCCC-------cHHHHHHHHHHHHH---HHHHHhhhHhcCccccccCCHHHHH
Confidence            7999999999999999999999999876544       47899999999998   48899999986422     235799


Q ss_pred             HHHHhhcCCCccccHHHHhhccC
Q 031091          144 RYCQRIGRSDFWGGESELLVSTC  166 (166)
Q Consensus       144 eYC~~I~~t~~WGGeiEL~ALS~  166 (166)
                      .||+.|++|++|||+|||.|||+
T Consensus       227 ~Yc~eI~~t~~WGgelEL~AlSh  249 (302)
T KOG2606|consen  227 KYCREIRNTAAWGGELELKALSH  249 (302)
T ss_pred             HHHHHhhhhccccchHHHHHHHH
Confidence            99999999999999999999985

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.73  E-value=4.4e-18  Score=125.94  Aligned_cols=69  Identities=33%  Similarity=0.657  Sum_probs=56.6

Q ss_pred             cCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHh-cccCCchhhHHHHHhhhhhhhHHHHHHhhcCCCcc
Q 031091           77 TGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVIC-DSGSERRQYEEALIAITIDESLKRYCQRIGRSDFW  155 (166)
Q Consensus        77 p~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~-~~~~~r~~f~efl~~~~~~e~feeYC~~I~~t~~W  155 (166)
                      |+|||||||||++||...++      ..+..+.+||+.++++|. .   +++.|.+++.    +.       +|+++++|
T Consensus         1 pgDGnClF~Avs~~l~~~~~------~~~~~~~~lR~~~~~~l~~~---~~~~~~~~~~----~~-------~~~~~~~W   60 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGG------GSEDNHQELRKAVVDYLRDK---NRDKFEEFLE----GD-------KMSKPGTW   60 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-S------SSTTTHHHHHHHHHHHHHTH---TTTHHHHHHH----HH-------HHTSTTSH
T ss_pred             CCCccHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHh---ccchhhhhhh----hh-------hhcccccc
Confidence            79999999999999985432      113468899999999997 5   7788999872    22       99999999


Q ss_pred             ccHHHHhhcc
Q 031091          156 GGESELLVST  165 (166)
Q Consensus       156 GGeiEL~ALS  165 (166)
                      ||++||.|||
T Consensus        61 g~~~el~a~a   70 (121)
T PF02338_consen   61 GGEIELQALA   70 (121)
T ss_dssp             EEHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9999999987

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4e-17  Score=139.44  Aligned_cols=80  Identities=26%  Similarity=0.469  Sum_probs=69.0

Q ss_pred             CcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHhh
Q 031091           70 RYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRI  149 (166)
Q Consensus        70 gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~I  149 (166)
                      -+..+.||+|++|||+||.+.|....+.         ...+||+.++..+.+   +++.|.+++    ++++-.+||.||
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~---------~~~elR~iiA~~Vas---np~~yn~Ai----LgK~n~eYc~WI  172 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN---------RPYELREIIAQEVAS---NPDKYNDAI----LGKPNKEYCAWI  172 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCC---------CcHHHHHHHHHHHhc---ChhhhhHHH----hCCCcHHHHHHH
Confidence            4556778999999999999988643221         125999999999985   789999998    899999999999


Q ss_pred             cCCCccccHHHHhhcc
Q 031091          150 GRSDFWGGESELLVST  165 (166)
Q Consensus       150 ~~t~~WGGeiEL~ALS  165 (166)
                      ++...|||.|||.+||
T Consensus       173 ~k~dsWGGaIElsILS  188 (307)
T KOG3288|consen  173 LKMDSWGGAIELSILS  188 (307)
T ss_pred             ccccccCceEEeeeeh
Confidence            9999999999999998

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.1e-10  Score=104.24  Aligned_cols=79  Identities=27%  Similarity=0.379  Sum_probs=69.9

Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh
Q 031091           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR  148 (166)
Q Consensus        69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~  148 (166)
                      .++.+++|..||+|+|||++||++..          .+.++..|++++|++.   +.++.|..|+     .++|-.|.++
T Consensus       216 ~g~e~~Kv~edGsC~fra~aDQvy~d----------~e~~~~~~~~~~dq~~---~e~~~~~~~v-----t~~~~~y~k~  277 (371)
T KOG2605|consen  216 FGFEYKKVVEDGSCLFRALADQVYGD----------DEQHDHNRRECVDQLK---KERDFYEDYV-----TEDFTSYIKR  277 (371)
T ss_pred             hhhhhhhcccCCchhhhccHHHhhcC----------HHHHHHHHHHHHHHHh---hccccccccc-----ccchhhcccc
Confidence            68899999999999999999999863          3457899999999995   3778888774     6899999999


Q ss_pred             hcCCCccccHHHHhhcc
Q 031091          149 IGRSDFWGGESELLVST  165 (166)
Q Consensus       149 I~~t~~WGGeiEL~ALS  165 (166)
                      ++..+.||-.+|++|++
T Consensus       278 kr~~~~~gnhie~Qa~a  294 (371)
T KOG2605|consen  278 KRADGEPGNHIEQQAAA  294 (371)
T ss_pred             cccCCCCcchHHHhhhh
Confidence            99999999999999986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.2e-09  Score=94.82  Aligned_cols=86  Identities=8%  Similarity=0.014  Sum_probs=63.5

Q ss_pred             EEEEecCCCChhhHHHHHHHHHccC-CCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhh--hhhHHHHHHh
Q 031091           72 SVQRVTGDGRCLFRALVKGMALNKG-ITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITI--DESLKRYCQR  148 (166)
Q Consensus        72 ~I~~Ip~DGnCLFrAIadQL~~~~g-~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~--~e~feeYC~~  148 (166)
                      .-.++++||+|+|.+|++||..+.- ..+      ....++|-.-..|..+   +...|+.+..+...  -.+|++||+.
T Consensus       172 ~k~d~~~dG~ieia~iS~~l~v~i~~Vdv------~~~~~dr~~~~~~~q~---~~i~f~g~hfD~~t~~m~~~dt~~ne  242 (306)
T COG5539         172 VKPDSQGDGCIEIAIISDQLPVRIHVVDV------DKDSEDRYNSHPYVQR---ISILFTGIHFDEETLAMVLWDTYVNE  242 (306)
T ss_pred             hccccCCCceEEEeEeccccceeeeeeec------chhHHhhccCChhhhh---hhhhhcccccchhhhhcchHHHHHhh
Confidence            3347899999999999999976532 222      1235667666666653   66778777653222  2489999999


Q ss_pred             hcCCCccccHHHHhhccC
Q 031091          149 IGRSDFWGGESELLVSTC  166 (166)
Q Consensus       149 I~~t~~WGGeiEL~ALS~  166 (166)
                      |+.++.||+.||+++|+.
T Consensus       243 ~~~~a~~g~~~ei~qLas  260 (306)
T COG5539         243 VLFDASDGITIEIQQLAS  260 (306)
T ss_pred             hcccccccchHHHHHHHH
Confidence            999999999999999973

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=7.6e-08  Score=83.76  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             EEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHhhcCCC
Q 031091           74 QRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSD  153 (166)
Q Consensus        74 ~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~I~~t~  153 (166)
                      ....+|.+|+|+++.+.+..            ....+||.+|+..+.+   +++.|.+++    .+.+--.||.||....
T Consensus       115 ~p~~~d~srl~q~~~~~l~~------------asv~~lrE~vs~Ev~s---nPDl~n~~i----~~~~~i~y~~~i~k~d  175 (306)
T COG5539         115 MPGQDDNSRLFQAERYSLRD------------ASVAKLREVVSLEVLS---NPDLYNPAI----LEIDVIAYATWIVKPD  175 (306)
T ss_pred             CCCCCchHHHHHHHHhhhhh------------hhHHHHHHHHHHHHhh---Cccccchhh----cCcchHHHHHhhhccc
Confidence            33458999999999997642            2467999999999985   678999988    6788999999999999


Q ss_pred             ccc-cHHHHhhccC
Q 031091          154 FWG-GESELLVSTC  166 (166)
Q Consensus       154 ~WG-GeiEL~ALS~  166 (166)
                      .|| |.+||-+||.
T Consensus       176 ~~~dG~ieia~iS~  189 (306)
T COG5539         176 SQGDGCIEIAIISD  189 (306)
T ss_pred             cCCCceEEEeEecc
Confidence            999 9999999984

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.07  E-value=4.9e-06  Score=69.49  Aligned_cols=52  Identities=12%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHH-HhhcCCCccccHHHHhhcc
Q 031091          110 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYC-QRIGRSDFWGGESELLVST  165 (166)
Q Consensus       110 eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC-~~I~~t~~WGGeiEL~ALS  165 (166)
                      .||-.++.||+.   |.+.|.+|+.+.. ..++++|| +.|...+.=.+++.+.||+
T Consensus       141 flRLlts~~l~~---~~d~y~~fi~~~~-~~tve~~C~~~Vep~~~Ead~v~i~ALa  193 (244)
T PF10275_consen  141 FLRLLTSAYLKS---NSDEYEPFIDGLE-YLTVEEFCSQEVEPMGKEADHVQIIALA  193 (244)
T ss_dssp             HHHHHHHHHHHH---THHHHGGGSSTT---S-HHHHHHHHTSSTT--B-HHHHHHHH
T ss_pred             HHHHHHHHHHHh---hHHHHhhhhcccc-cCCHHHHHHhhcccccccchhHHHHHHH
Confidence            788888888885   6788888862110 27899999 4556666777899999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=5e-05  Score=64.72  Aligned_cols=53  Identities=11%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHhhcCC-CccccHHHHhhccC
Q 031091          108 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRS-DFWGGESELLVSTC  166 (166)
Q Consensus       108 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~I~~t-~~WGGeiEL~ALS~  166 (166)
                      +.+||-.++-+|+.   +.+.|.||+   +-+.+.++||..=..| ..=-|+|+|.|||+
T Consensus       156 V~ylRLvtS~~ik~---~adfy~pFI---~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~  209 (256)
T KOG3991|consen  156 VMYLRLVTSGFIKS---NADFYQPFI---DEGMTVKAFCTQEVEPMYKESDHIHITALSQ  209 (256)
T ss_pred             HHHHHHHHHHHHhh---ChhhhhccC---CCCCcHHHHHHhhcchhhhccCceeHHHHHh
Confidence            45889999999985   668888886   2357999999976655 34567899999985

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.55  E-value=1.8  Score=32.50  Aligned_cols=16  Identities=19%  Similarity=0.426  Sum_probs=14.1

Q ss_pred             ecCCCChhhHHHHHHH
Q 031091           76 VTGDGRCLFRALVKGM   91 (166)
Q Consensus        76 Ip~DGnCLFrAIadQL   91 (166)
                      |.-|+|||.-||+..|
T Consensus         3 ~sR~NNCLVVAis~~L   18 (104)
T PF05415_consen    3 ASRPNNCLVVAISECL   18 (104)
T ss_pred             ccCCCCeEeehHHHHh
Confidence            4679999999999977

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-14
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-14
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	5e-11
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-05

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 65.1 bits (158), Expect = 6e-14
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 47  NNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDERE 106
            +L + ++       +P     + + + R  GDG C + ++ +    NK           
Sbjct: 7   RSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKT---------- 56

Query: 107 DADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
             D     +K +     + R+ Y+E   A  +  SL+ Y +R+   + WG   E  +
Sbjct: 57  --DHSYHYIKRLTES--AARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASM 109

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 47  NNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDERE 106
            +L + ++       +P     + + + R  GDG C + ++ +             ++ +
Sbjct: 7   RSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTM---------PNKTD 57

Query: 107 DADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
            +      + E        R+ Y+E   A  +  SL+ Y +R+   + WG   E  +
Sbjct: 58  HSYHYIKRLTESAA-----RKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASM 109

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 57.7 bits (139), Expect = 5e-11
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 73  VQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEA 132
           V  V  D  CLF A+  G+            +++   DLR  V + +    +   ++ +A
Sbjct: 22  VHPVLDDNSCLFHAIAYGI-----------FKQDSVRDLREMVSKEVL---NNPVKFNDA 67

Query: 133 LIAITIDESLKRYCQRIGRSDFWGGESELLV 163
                +D+  K Y Q I + + WGG  E+ +
Sbjct: 68  ----ILDKPNKDYAQWILKMESWGGAIEIGI 94

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 71  YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYE 130
           + ++++  DG CLFRA+   +  ++          +  + +R    + +         + 
Sbjct: 59  FIIKQMKEDGACLFRAVADQVYGDQ----------DMHEVVRKHCMDYLM---KNADYFS 105

Query: 131 EALIAITIDESLKRYCQRIGRSDFWGGESELLV 163
                  + E    Y  R  +++  G   E+  
Sbjct: 106 N-----YVTEDFTTYINRKRKNNCHGNHIEMQA 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.92
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.91
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.88
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.87
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.56
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.31
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.31
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.16
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	95.98
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	89.93

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.92  E-value=1.5e-25  Score=184.03  Aligned_cols=79  Identities=29%  Similarity=0.570  Sum_probs=70.7

Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh
Q 031091           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR  148 (166)
Q Consensus        69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~  148 (166)
                      .+|.+++||+|||||||||++|| ...          ..+.+||+.|++||+.   +++.|.||+    ++++|++||++
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~~----------~~~~~lR~~vv~yi~~---n~d~f~e~~----~~~~~e~Y~~~   79 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FKQ----------DSVRDLREMVSKEVLN---NPVKFNDAI----LDKPNKDYAQW   79 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HSS----------CCSHHHHHHHHHHHHH---CTTTTCHHH----HTSCHHHHHHH
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CCc----------hHHHHHHHHHHHHHHH---CHHHHhhhh----cCCCHHHHHHH
Confidence            37899999999999999999999 421          2367999999999995   788998887    67999999999


Q ss_pred             hcCCCccccHHHHhhcc
Q 031091          149 IGRSDFWGGESELLVST  165 (166)
Q Consensus       149 I~~t~~WGGeiEL~ALS  165 (166)
                      |+++++|||+|||+|||
T Consensus        80 m~~~~~WGg~iEL~Als   96 (212)
T 3by4_A           80 ILKMESWGGAIEIGIIS   96 (212)
T ss_dssp             TTSTTSCCCHHHHHHHH
T ss_pred             hcCCCEEccHHHHHHHH
Confidence            99999999999999997

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.91  E-value=6.7e-26  Score=183.35  Aligned_cols=79  Identities=16%  Similarity=0.379  Sum_probs=55.6

Q ss_pred             CCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh
Q 031091           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR  148 (166)
Q Consensus        69 ~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~  148 (166)
                      .||.+++||+|||||||||++||...          ...+.+||+.|++||+.   +++.|.+|+     +++|++||++
T Consensus        57 ~gL~~~~I~~DGnCLFrAia~qL~g~----------~~~h~~LR~~vv~yi~~---n~d~f~~Fv-----~~~~e~Y~~~  118 (185)
T 3pfy_A           57 KGFIIKQMKEDGACLFRAVADQVYGD----------QDMHEVVRKHCMDYLMK---NADYFSNYV-----TEDFTTYINR  118 (185)
T ss_dssp             HCCEEECCCCSTTHHHHHHHHHHHSC----------GGGHHHHHHHHHHHHHH---THHHHTTCC---------------
T ss_pred             CCcEEEeeCCCCChHHHHHHHHHhCC----------chHHHHHHHHHHHHHHH---HHHHHHHHH-----hccHHHHHHH
Confidence            79999999999999999999999743          23578999999999995   789999884     5789999999


Q ss_pred             hcCCCccccHHHHhhcc
Q 031091          149 IGRSDFWGGESELLVST  165 (166)
Q Consensus       149 I~~t~~WGGeiEL~ALS  165 (166)
                      |+++++|||+|||+|||
T Consensus       119 m~~~~~WGg~iEL~AlS  135 (185)
T 3pfy_A          119 KRKNNCHGNHIEMQAMA  135 (185)
T ss_dssp             -------CCHHHHHHHH
T ss_pred             hhCCCccchHHHHHHHH
Confidence            99999999999999997

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.88  E-value=2.9e-23  Score=167.49  Aligned_cols=90  Identities=21%  Similarity=0.356  Sum_probs=71.5

Q ss_pred             chhhhccCCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhh
Q 031091           62 SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDES  141 (166)
Q Consensus        62 ~~~~~k~~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~  141 (166)
                      .|......++.|.+||+|||||||||++||....  +  ....+..+.+||+.|++||++   ++++   ++    ++++
T Consensus        22 ~p~~~~~~~~~v~rv~gDGnCLFrAva~qL~~~~--~--~~~~~~~~~~LR~~~~~yi~~---~~~~---~~----~~~~   87 (185)
T 3phx_A           22 NPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHYIKRLTESAARKYYQE---EPEA---RL----VGLS   87 (185)
T ss_dssp             CCCCBHHHHEEEECCCSSTTHHHHHHHHHHSTTC--C--TTTHHHHHHHHHHHHHHHGGG---CTTH---HH----HCCC
T ss_pred             CCCcccccCeEEEccCCCCchHHHHHHHHHhCCC--c--cchhhhHHHHHHHHHHHHHHh---ChHh---hh----cCCC
Confidence            3444445678999999999999999999997531  1  011233489999999999996   4444   33    6889


Q ss_pred             HHHHHHhhcCCCccccHHHHhhcc
Q 031091          142 LKRYCQRIGRSDFWGGESELLVST  165 (166)
Q Consensus       142 feeYC~~I~~t~~WGGeiEL~ALS  165 (166)
                      |++||++|+++++|||++||+|||
T Consensus        88 ~~~Y~~~m~~~~~WGg~iEL~Als  111 (185)
T 3phx_A           88 LEDYLKRMLSDNEWGSTLEASMLA  111 (185)
T ss_dssp             HHHHHHHHTSTTCCCBHHHHHHHH
T ss_pred             HHHHHHHhhCCCccCcHHHHHHHH
Confidence            999999999999999999999997

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.87  E-value=7.7e-23  Score=169.33  Aligned_cols=89  Identities=21%  Similarity=0.356  Sum_probs=70.8

Q ss_pred             hhhhccCCcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhH
Q 031091           63 PAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESL  142 (166)
Q Consensus        63 ~~~~k~~gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~f  142 (166)
                      |......+|.|++||+|||||||||++||....  .  ....+..+.+||+.|++||+.   |++.   ++    ++++|
T Consensus        23 p~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~--~~~~~~~h~~LR~~va~yi~~---n~d~---~~----~~~~f   88 (219)
T 3phu_A           23 PRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHYIKRLTESAARKYYQE---EPEA---RL----VGLSL   88 (219)
T ss_dssp             CCCBHHHHEEEECCCCSSCHHHHHHHHHHCTTC--C--TTTHHHHHHHHHHHHHHHGGG---CHHH---HH----HCCCH
T ss_pred             CCcccccceEEEccCCCCchHHHHHHHHHhCCC--c--cchhhhHHHHHHHHHHHHHHh---Chhh---hh----cCCCH
Confidence            344444578899999999999999999996431  1  011233489999999999985   5555   33    68899


Q ss_pred             HHHHHhhcCCCccccHHHHhhcc
Q 031091          143 KRYCQRIGRSDFWGGESELLVST  165 (166)
Q Consensus       143 eeYC~~I~~t~~WGGeiEL~ALS  165 (166)
                      ++||++|+++++|||++||+|||
T Consensus        89 eeY~~~m~~~g~WGG~iEL~AlS  111 (219)
T 3phu_A           89 EDYLKRMLSDNEWGSTLEASMLA  111 (219)
T ss_dssp             HHHHHHHHSTTCCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCccCCHHHHHHHH
Confidence            99999999999999999999997

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.56  E-value=4e-15  Score=123.52  Aligned_cols=54  Identities=9%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhccC
Q 031091          107 DADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVSTC  166 (166)
Q Consensus       107 ~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS~  166 (166)
                      ....||..++.||+.   |+++|.||+.   .+.+|++||+ .|+.+++|||++||+|||.
T Consensus       131 iv~~lR~lta~~i~~---~~d~f~pFi~---~~~~~~~yC~~~ve~~~~~~~~iei~ALa~  185 (234)
T 1tff_A          131 IVQFLRLLTSAFIRN---RADFFRHFID---EEMDIKDFCTHEVEPMATECDHIQITALSQ  185 (234)
T ss_dssp             HHHHHHHHHHHHHHH---THHHHGGGSC---TTSCHHHHHHHHTSSTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---CHHHHhhhhc---CCCCHHHHHHHHhhhhhcccccHHHHHHHH
Confidence            356799999999995   7899999972   2348999999 8999999999999999973

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.31  E-value=1.1e-12  Score=112.25  Aligned_cols=52  Identities=10%  Similarity=0.075  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhcc
Q 031091          108 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST  165 (166)
Q Consensus       108 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS  165 (166)
                      ...||..++.||+.   |+++|.||+.   .+.++++||+ +|+.+++|||+|||.||+
T Consensus       170 v~~LRllts~yi~~---~~d~f~pFi~---~~~~v~~yC~~eVe~~~~e~d~leI~ALa  222 (284)
T 4dhi_B          170 LMFFRLITSAFLKQ---NSEEYAPFID---EGMTVAQYCEQEIEPMWKDADHLAINSLI  222 (284)
T ss_dssp             HHHHHHHHHHHHHH---THHHHGGGSC---TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---CHHHHHhhcC---CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence            45899999999995   8999999973   2368999999 899999999999999997

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.31  E-value=1.2e-12  Score=115.46  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccccHHHHhhcc
Q 031091          108 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST  165 (166)
Q Consensus       108 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WGGeiEL~ALS  165 (166)
                      ...||..++.||+.   |+++|.+|+.   .+.++++||+ +|+.++.|||++||.||+
T Consensus       300 v~~lRllts~~i~~---~~d~f~pFi~---~~~~v~~yc~~~ve~~~~e~d~l~I~ALa  352 (399)
T 4ddg_A          300 VVYLRLLTSGYLQR---ESKFFEHFIE---GGRTVKEFCQQEVEPMCKESDHIHIIALA  352 (399)
T ss_dssp             HHHHHHHHHHHHHH---THHHHGGGSS---SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---CHHHHhcccC---CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence            55799999999995   8899999972   2358999999 999999999999999997

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.16  E-value=8.4e-12  Score=103.35  Aligned_cols=72  Identities=11%  Similarity=0.082  Sum_probs=60.9

Q ss_pred             CCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCccc
Q 031091           78 GDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWG  156 (166)
Q Consensus        78 ~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~-~I~~t~~WG  156 (166)
                      .||+||++++.+|+...           .....||..++.||+.   |+++|.||+.   .+.+|++||+ .|+.+++||
T Consensus       116 ~~~~~L~~~fndq~~s~-----------~~v~~lR~lta~yi~~---~~d~f~pFi~---~~~~~e~yc~~~ve~~~~~~  178 (234)
T 2zfy_A          116 TSVADLLASFNDQSTSD-----------YLVVYLRLLTSGYLQR---ESKFFEHFIE---GGRTVKEFCQQEVEPMCKES  178 (234)
T ss_dssp             CCHHHHHHHHTSHHHHH-----------HHHHHHHHHHHHHHHH---THHHHGGGCC---SSCCHHHHHHHHTSSTTCCC
T ss_pred             CCHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHH---CHHHHhcccC---CCCCHHHHHHHHhhhHhhcC
Confidence            39999999999997522           3577999999999995   8899999962   2359999997 599999999


Q ss_pred             cHHHHhhccC
Q 031091          157 GESELLVSTC  166 (166)
Q Consensus       157 GeiEL~ALS~  166 (166)
                      |++||.|||.
T Consensus       179 ~~i~i~ALa~  188 (234)
T 2zfy_A          179 DHIHIIALAQ  188 (234)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999999973

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=95.98  E-value=0.0029  Score=51.95  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.0

Q ss_pred             EEEEecCCCChhhHHHHHHHHH
Q 031091           72 SVQRVTGDGRCLFRALVKGMAL   93 (166)
Q Consensus        72 ~I~~Ip~DGnCLFrAIadQL~~   93 (166)
                      .+.+|.|||||.|||++.+.-.
T Consensus        44 ~~R~vRgDGNCFyRaf~f~ylE   65 (234)
T 2zfy_A           44 YIRKTRPDGNCFYRAFGFSHLE   65 (234)
T ss_dssp             EEECBCCSSCHHHHHHHHHHHH
T ss_pred             ceeeccCCccHHHHHHHHHHHH
Confidence            5677999999999999998754

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=89.93  E-value=0.29  Score=43.38  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=32.4

Q ss_pred             CcEEEEecCCCChhhHHHHHHHHHccCCCCCCcchhhhHHHHHHHHHHHHhc
Q 031091           70 RYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDADDLRMAVKEVICD  121 (166)
Q Consensus        70 gl~I~~Ip~DGnCLFrAIadQL~~~~g~~~s~~~~~~~a~eLR~~vad~I~~  121 (166)
                      .|......||||||..|++-.|.......          ..||+...+.|..
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamWGv~Drd----------lvLRkaL~~~L~~  152 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMWGVQDTD----------LVLRKALFSTLKE  152 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHHSSCSTT----------CHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCchHHHHHhHHhcCCCCHh----------HHHHHHHHHHHHh
Confidence            45566779999999999999998643332          3788888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.36

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.4e-13  Score=109.45  Aligned_cols=50  Identities=10%  Similarity=0.159  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcccCCchhhHHHHHhhhhhhhHHHHHHh-hcCCCccccHHHHhhcc
Q 031091          110 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR-IGRSDFWGGESELLVST  165 (166)
Q Consensus       110 eLR~~vad~I~~~~~~r~~f~efl~~~~~~e~feeYC~~-I~~t~~WGGeiEL~ALS  165 (166)
                      .||..++.||+.   +++.|.+|+.   .+.++++||.+ |..+++|||++||.|||
T Consensus       128 ~lR~l~s~~i~~---~~~~y~~Fi~---~~~~~~~yc~~~v~~~~~e~d~ieI~aLa  178 (228)
T d1tffa_         128 FLRLLTSAFIRN---RADFFRHFID---EEMDIKDFCTHEVEPMATECDHIQITALS  178 (228)
T ss_dssp             HHHHHHHHHHHH---THHHHGGGSC---TTSCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHH---CHHHHHhHhc---CCccHHHHHHHHHccccccCCcHHHHHHH
Confidence            579999999995   7889998862   34689999986 89999999999999997