Citrus Sinensis ID: 031119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEccccccccEEEEEEEccccccccEEEEEEccccccccccccccHHHHHHHHHHcccccccccccccEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccHHHHHccccccccEEccccccccEEEEEEcccccccccEEEEEEccccccccccccccHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccccEcEEEEEEccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfqlaftacsfPAIVSYALAAndwqlgagepngfksitafypqeassssVSVVITGlgpdftrmesfgKVEAFADTLVSGldrswrrppgvaaklidckaskgfYYIEYtlqnpgesRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Flexible Loop (DISEMBL)
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYpqeassssVSVVITGLGPDFTRMESFGKVEAFADTLVSgldrswrrppgvaaKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEeesekygsniekavasfrfi
Low Complexity Region (SEG)
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered region (IsUnstruct)
**QLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEA**SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVE********************
Disordered Region (DISOPRED)
**QLAFTACSFPAIVSYALAANDWQLGAG*PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVS******************CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISEMBL)
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Disordered Region (DISPRO)
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFQLAFTACSFPAIVSYALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q9S720	247	PsbP domain-containing pr	yes	no	0.872	0.582	0.798	5e-67

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2

 Score =  253 bits (645), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
            DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGL
Sbjct: 104 QDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGL 163

Query: 82  DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
           DRSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTG
Sbjct: 164 DRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTG 223

Query: 142 QFVEEESEKYGSNIEKAVASFRFI 165
           QF +EES +  S I+K V SFRFI
Sbjct: 224 QFTDEESAEQSSKIQKTVKSFRFI 247

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255539324	264	conserved hypothetical protein [Ricinus	1.0	0.625	0.718	1e-70
449522159	188	PREDICTED: psbP domain-containing protei	1.0	0.877	0.680	8e-69
449458059	257	PREDICTED: psbP domain-containing protei	1.0	0.642	0.675	3e-68
188509930	274	unknown predicted protein [Gossypioides	0.824	0.496	0.882	6e-68
225457650	253	PREDICTED: psbP domain-containing protei	1.0	0.652	0.663	7e-67
21537211	247	thylakoid lumen protein, chloroplast pre	0.872	0.582	0.798	2e-65
18411110	247	PsbP domain-containing protein 3 [Arabid	0.872	0.582	0.798	2e-65
297839519	225	hypothetical protein ARALYDRAFT_476802 [	0.896	0.657	0.770	4e-65
224083366	193	predicted protein [Populus trichocarpa]	0.951	0.813	0.675	1e-64
357467179	241	PsbP domain-containing protein [Medicago	0.872	0.597	0.777	3e-64

>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis] gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 150/185 (81%), Gaps = 20/185 (10%)

Query: 1   MFQLAFTA-CSFPAIVSYALA-------------------ANDWQLGAGEPNGFKSITAF 40
           +F +AFT   +FP ++S A A                     DW++GAGEPNGFKS+TAF
Sbjct: 80  LFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPNGFKSVTAF 139

Query: 41  YPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKA 100
           YP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVAAKLIDCKA
Sbjct: 140 YPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVAAKLIDCKA 199

Query: 101 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVA 160
           +KG YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YGS ++K V+
Sbjct: 200 TKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYGSKVQKVVS 259

Query: 161 SFRFI 165
           SF+FI
Sbjct: 260 SFKFI 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/188 (68%), Positives = 146/188 (77%), Gaps = 23/188 (12%)

Query: 1   MFQLAFTACSFPAIVSYALAAN-----------------------DWQLGAGEPNGFKSI 37
           M  + FTA SF  +VS ALA +                       DWQ+G GEPNGFKS+
Sbjct: 1   MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60

Query: 38  TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 97
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61  TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120

Query: 98  CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 157
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180

Query: 158 AVASFRFI 165
            V SF FI
Sbjct: 181 VVNSFAFI 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Cucumis sativus]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/188 (67%), Positives = 145/188 (77%), Gaps = 23/188 (12%)

Query: 1   MFQLAFTACSFPAIVSYALAAN-----------------------DWQLGAGEPNGFKSI 37
           M  + FTA SF  + S ALA +                       DWQ+G GEPNGFKS+
Sbjct: 70  MLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 129

Query: 38  TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 97
           TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 130 TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 189

Query: 98  CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 157
           C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 190 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 249

Query: 158 AVASFRFI 165
            V SF FI
Sbjct: 250 VVNSFAFI 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]

 Score =  261 bits (667), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 130/136 (95%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
            DWQ+GAGEPN FKSITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLVSGL
Sbjct: 109 QDWQVGAGEPNNFKSITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGL 168

Query: 82  DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
           DRSW+RPPGVAAKLIDCKA+ GFYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTG
Sbjct: 169 DRSWQRPPGVAAKLIDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTG 228

Query: 142 QFVEEESEKYGSNIEK 157
           QFVEEE+EKYGS IEK
Sbjct: 229 QFVEEEAEKYGSRIEK 244

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera] gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (658), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 147/187 (78%), Gaps = 22/187 (11%)

Query: 1   MFQLAFTACSFPAIVSYALA----------------------ANDWQLGAGEPNGFKSIT 38
           + Q+ F+  S  AIV  ALA                        DWQ+G+GEP+GFKS+T
Sbjct: 67  VLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVT 126

Query: 39  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 98
           AFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKLIDC
Sbjct: 127 AFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDC 186

Query: 99  KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 158
           +A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S IEK 
Sbjct: 187 RAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEKV 246

Query: 159 VASFRFI 165
           VASFRFI
Sbjct: 247 VASFRFI 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis thaliana]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
            DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGL
Sbjct: 104 QDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGL 163

Query: 82  DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
           DRSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTG
Sbjct: 164 DRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTG 223

Query: 142 QFVEEESEKYGSNIEKAVASFRFI 165
           QF +EES +  S I+K V SFRFI
Sbjct: 224 QFTDEESSEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana] gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic; AltName: Full=OEC23-like protein 2; Flags: Precursor gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana] gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana] gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 129/144 (89%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
            DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGL
Sbjct: 104 QDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGL 163

Query: 82  DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
           DRSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTG
Sbjct: 164 DRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTG 223

Query: 142 QFVEEESEKYGSNIEKAVASFRFI 165
           QF +EES +  S I+K V SFRFI
Sbjct: 224 QFTDEESAEQSSKIQKTVKSFRFI 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata] gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 131/148 (88%)

Query: 18  ALAANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTL 77
           ++   DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TL
Sbjct: 78  SIPQEDWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETL 137

Query: 78  VSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLY 137
           VSGLDRSW++P GV AKLID ++SKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLY
Sbjct: 138 VSGLDRSWQKPAGVTAKLIDSRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLY 197

Query: 138 TVTGQFVEEESEKYGSNIEKAVASFRFI 165
           TVTGQF +EES +  S I+K V SFRFI
Sbjct: 198 TVTGQFTDEESAEQSSKIQKTVKSFRFI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa] gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 141/179 (78%), Gaps = 22/179 (12%)

Query: 1   MFQLAFTACSFPAIVSYALAA----------------------NDWQLGAGEPNGFKSIT 38
           +F + FTA +FPAI S ALAA                        WQ+GAGEP+G+KS+T
Sbjct: 8   LFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPSGYKSVT 67

Query: 39  AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 98
           AFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVAAKLID 
Sbjct: 68  AFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVAAKLIDS 127

Query: 99  KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 157
           KA+ G YYIEYTLQNPGESR+HL SA+G+  NGWYNRLYTVTGQFV+EESEK+G+ I K
Sbjct: 128 KAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFGTEIRK 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467179|ref|XP_003603874.1| PsbP domain-containing protein [Medicago truncatula] gi|355492922|gb|AES74125.1| PsbP domain-containing protein [Medicago truncatula]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 132/144 (91%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
            +WQ+G GE  GFKS+TAFYP+E S+S+VSVVITG+GPDFT+MESFGKVE FADTLVSGL
Sbjct: 98  QEWQIGTGESAGFKSLTAFYPKEQSNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGL 157

Query: 82  DRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTG 141
           DRSW++PPGVAAKLIDCK+SKGFY+IEYTLQ+PGE RKHL+SAIGM +NGWYNRLYTVTG
Sbjct: 158 DRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTG 217

Query: 142 QFVEEESEKYGSNIEKAVASFRFI 165
           Q+ EEE++KY S I+KAV SF+FI
Sbjct: 218 QYGEEETDKYASKIQKAVRSFKFI 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2011711	247	AT1G76450 [Arabidopsis thalian	0.866	0.578	0.804	5.5e-61

TAIR|locus:2011711 AT1G76450 [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 115/143 (80%), Positives = 129/143 (90%)

Query:    23 DWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 82
             DWQ+G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLD
Sbjct:   105 DWQVGQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLD 164

Query:    83 RSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQ 142
             RSW++P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQ
Sbjct:   165 RSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQ 224

Query:   143 FVEEESEKYGSNIEKAVASFRFI 165
             F +EES +  S I+K V SFRFI
Sbjct:   225 FTDEESAEQSSKIQKTVKSFRFI 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      165       165   0.00093  107 3  11 22  0.38    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.73u 0.19s 13.92t   Elapsed:  00:00:00
  Total cpu time:  13.73u 0.19s 13.92t   Elapsed:  00:00:01
  Start:  Mon May 20 20:12:47 2013   End:  Mon May 20 20:12:48 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S720	PPD3_ARATH	No assigned EC number	0.7986	0.8727	0.5829	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002933001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (184 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023298001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (264 aa)				•			•		0.546
	GSVIVG00032533001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (266 aa)				•			•		0.512
	GSVIVG00014308001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)				•			•		0.427

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam01789	163	pfam01789, PsbP, PsbP	2e-07

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 46  SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG-LDRSWRRPPGV--AAKLIDCKA-- 100
           S  +VSVVI+ +    + +E  G  E   + L+ G L      P G    A+L++     
Sbjct: 47  SDENVSVVISPVDKKKS-LEDLGSPEEVGERLLRGVLA-----PEGSGREAELLEASERE 100

Query: 101 --SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 158
              K +Y +EY ++      +H  + +     G   +LYT+  Q  E+   K     E+ 
Sbjct: 101 VDGKTYYDLEYLVRLADGGDRHELATVT-VDRG---KLYTLAAQTNEKRWFKVKKLFERV 156

Query: 159 VASFRF 164
           V SF  
Sbjct: 157 VDSFSV 162

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	99.97
PLN00067	263	PsbP domain-containing protein 6; Provisional	99.97
PLN03152	241	hypothetical protein; Provisional	99.95
PLN00066	262	PsbP domain-containing protein 4; Provisional	99.94
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.66
PF10738	175	Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR	96.21
COG5435	147	Uncharacterized conserved protein [Function unknow	84.52

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=2.7e-38  Score=271.18  Aligned_cols=134  Identities=19%  Similarity=0.349  Sum_probs=118.5

Q ss_pred             cCcee--ccccCCCceeEEEecCCCCCcceEEEEEecCCC-CccccccCCCHHHHHHHHhhccccCC---CCCCCCeeEE
Q 031119           22 NDWQL--GAGEPNGFKSITAFYPQEASSSSVSVVITGLGP-DFTRMESFGKVEAFADTLVSGLDRSW---RRPPGVAAKL   95 (165)
Q Consensus        22 ~~W~~--~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~-dft~L~sfG~p~evae~Lv~~~~rs~---~~ppg~~A~L   95 (165)
                      .||+.  +.|.+..|||++      +.+|||||+|++++. ++++|++||+|+||||+|+++++.+.   +..+|++++|
T Consensus       125 ~GWi~V~~~G~DVvFrD~I------e~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeL  198 (286)
T PLN00059        125 QNWIQVRGAGADIFFRDPV------VLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANI  198 (286)
T ss_pred             CCCeEeccCCCceEEeccC------ccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEE
Confidence            89994  778898999998      999999999999974 46899999999999999999987421   1224799999


Q ss_pred             Eeceec-----CceEEEEEEEeCCC----------------CCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHH
Q 031119           96 IDCKAS-----KGFYYIEYTLQNPG----------------ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN  154 (165)
Q Consensus        96 idA~~r-----k~yY~lEYtv~~P~----------------~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~  154 (165)
                      |+|.+|     +.||+|||++++|+                ++.||++|+|+|.|    ||||||++|+||+||+|+++.
T Consensus       199 VsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~n----GkLYTL~~qtpE~RW~kvk~~  274 (286)
T PLN00059        199 LSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN----DRLYSIRLQTPEKVFLEEEKD  274 (286)
T ss_pred             EEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeC----CEEEEEEcCCcHHHHHHHHHH
Confidence            999999     56999999999972                23899999999999    599999999999999999999


Q ss_pred             HHHhhceeeeC
Q 031119          155 IEKAVASFRFI  165 (165)
Q Consensus       155 ~~~vv~SF~v~  165 (165)
                      |++|++||+|+
T Consensus       275 f~~V~dSF~V~  285 (286)
T PLN00059        275 LRRVMDSFRVE  285 (286)
T ss_pred             HHHHHhheeec
Confidence            99999999985

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=5.9e-34  Score=226.65  Aligned_cols=132  Identities=32%  Similarity=0.491  Sum_probs=113.4

Q ss_pred             cCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec
Q 031119           22 NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS  101 (165)
Q Consensus        22 ~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r  101 (165)
                      ++|+..++  .|  ..+.|.++...++||||+|+|++.++ +|++||+|++||++|++..++++  ..++.++||++.+|
T Consensus        39 ~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~va~~l~~~~~~~~--~~~~~a~li~a~~~  111 (175)
T PF01789_consen   39 SGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEEVAERLLNGELASP--GSGREAELISASER  111 (175)
T ss_dssp             TTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHHHHHHHHHHCCCHC--TSSEEEEEEEEEEE
T ss_pred             CCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHHHHHHHhhhhcccc--cCCcceEEEEeeee
Confidence            89976555  33  45779999889999999999999997 99999999999999999987431  12499999999999


Q ss_pred             ----CceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          102 ----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       102 ----k~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                          +.||+|||+++.|++..||+++++++.+    ||||||++||||+||+|+++.|++|++||+|
T Consensus       112 ~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~----g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v  174 (175)
T PF01789_consen  112 EVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKN----GKLYTLTAQAPESRWDKVEPKLRKIVDSFRV  174 (175)
T ss_dssp             EETTEEEEEEEEEEEETTEEEEEEEEEEEEET----TEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE
T ss_pred             ecCCccEEEEEEEeccCCCcccEEEEEEEEEC----CEEEEEEEEcCHHHHHHHHHHHHHHHhcEEe
Confidence                5699999999999956899999999976    5999999999999999999999999999997

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=99.97  E-value=1.6e-31  Score=228.24  Aligned_cols=131  Identities=20%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             cCce---ec--cccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHH----HHHHHhhccccCC-CC----
Q 031119           22 NDWQ---LG--AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FADTLVSGLDRSW-RR----   87 (165)
Q Consensus        22 ~~W~---~~--~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~e----vae~Lv~~~~rs~-~~----   87 (165)
                      ++|+   +.  .|++.-|+|.+      +.++||||+|+|+  |+++|++||+|+|    |++.|.+.+.... ..    
T Consensus       106 ~~W~~~ke~~~~G~dv~f~D~~------~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf  177 (260)
T PLN00042        106 SKWNPSKEREFPGQVLRFEDNF------DATSNLSVMVTPT--DKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGF  177 (260)
T ss_pred             CCCccccccccCCceEEeeccc------cccccEEEEEecC--CcCCHhhcCCHHHHHHHHHHHHHhhhccCccccccCc
Confidence            8997   22  36666666666      8899999999998  4579999999999    7777887765221 00    


Q ss_pred             CCC--CeeEEEeceec----CceEEEEEEEeCCC--CCceeEEEEEEeecCCccceEEEEeccccchhhHHh-HHHHHHh
Q 031119           88 PPG--VAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKA  158 (165)
Q Consensus        88 ppg--~~A~LidA~~r----k~yY~lEYtv~~P~--~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~-~~~~~~v  158 (165)
                      .|+  .+|+||++++|    +.||+|||.+++|+  +..||+|++++|.+    ||||||++|+||+||.|+ ++.|+.|
T Consensus       178 ~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~aqa~EkRW~K~~~k~l~~v  253 (260)
T PLN00042        178 DANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKAQAGDKRWFKGARKFVEGA  253 (260)
T ss_pred             CcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEecCchhhhhHHHHHHHHHH
Confidence            122  27899999999    77999999999997  35799999999988    599999999999999998 6689999


Q ss_pred             hceeee
Q 031119          159 VASFRF  164 (165)
Q Consensus       159 v~SF~v  164 (165)
                      ++||+|
T Consensus       254 ~~SFsV  259 (260)
T PLN00042        254 ASSFSV  259 (260)
T ss_pred             Hhceec
Confidence            999997

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=99.97  E-value=5.2e-30  Score=219.07  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=104.0

Q ss_pred             EEEecCCCCCcceEEEEEecCC-----CCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEE
Q 031119           37 ITAFYPQEASSSSVSVVITGLG-----PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYI  107 (165)
Q Consensus        37 V~Af~P~~~~~eNVSVvit~v~-----~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~l  107 (165)
                      .+.|-.  +.++||||||+|+.     +| ++|++||+|++|+++|.+.+.    .++++.++||||++|    ++||+|
T Consensus       139 dv~F~D--~~dgnVSVIVSPV~r~t~k~~-~sIeDlGsPeeVl~~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~~  211 (263)
T PLN00067        139 EVKFED--EKQGKVQVVASPLIRLTNKPN-ATIEEIGSPEKLIASLGPFVT----GNSYDPDELLETSVEKIGDQTYYKY  211 (263)
T ss_pred             eEEEeC--CCCCCEEEEEecccccccCCC-CChHHccCHHHHHHHhhHHhh----cCCCCCcceEEeeeEeeCCeEEEEE
Confidence            355633  66889999999984     45 699999999999999999987    568999999999999    779999


Q ss_pred             EEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          108 EYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       108 EYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      ||.+..+++ .||+|+++++.+    |||||+++|+||+||.|+++.|++|++||+|
T Consensus       212 E~~tp~a~~-gRHnLataTV~~----GkLYtf~asanEkRW~K~k~~l~~V~dSFsV  263 (263)
T PLN00067        212 VLETPFALT-GSHNLAKATAKG----NTVVLFVVSASDKQWQSSEKTLKAILDSFQA  263 (263)
T ss_pred             EEEecCCCC-CceEEEEEEEEC----CEEEEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence            999999995 799999988766    5999999999999999999999999999986

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=198.61  Aligned_cols=110  Identities=20%  Similarity=0.340  Sum_probs=89.3

Q ss_pred             EEEecCCCCCcceEEEEEecCC-------CCccccccCCCHHHHHHHHhhccccCCCCCCC---CeeEEEecee-c--Cc
Q 031119           37 ITAFYPQEASSSSVSVVITGLG-------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPG---VAAKLIDCKA-S--KG  103 (165)
Q Consensus        37 V~Af~P~~~~~eNVSVvit~v~-------~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg---~~A~LidA~~-r--k~  103 (165)
                      +.|=+-....+|||||+|++++       .+ ++|.+||+|+|||+.|+.         +|   +.++.++.++ .  |+
T Consensus       119 ~~aRf~s~D~sEnVSVVIspv~~LK~tfle~-kDLtDLGsp~EVgkv~vP---------~g~~~~saR~iel~~E~dGKt  188 (241)
T PLN03152        119 FAARFASPDGSEVLSVVIRPSNQLKITFLEA-KDITDLGSLKEAAKIFVP---------GGATLYSARTIKVKEEEGIRT  188 (241)
T ss_pred             eeeeecCCCCCceEEEEEecCcccccccccc-CChhHcCCHHHHHHhhCC---------CcccccccceeeeeeecCCce
Confidence            4443333455899999999997       55 799999999999977652         32   1344444332 2  88


Q ss_pred             eEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119          104 FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus       104 yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                      ||+|||.++     .||++++|+|.+    |||||+++|++|+||+|++++|+++++||+|+
T Consensus       189 YY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~  241 (241)
T PLN03152        189 YYFYEFGRD-----EQHVALVATVNS----GKAYIAGATAPESKWDDDGVKLRSAAISLTVL  241 (241)
T ss_pred             eEEEEEEeC-----CcEEEEEEEEcC----CeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence            999999986     599999999988    59999999999999999999999999999986

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=99.94  E-value=8.8e-27  Score=199.59  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=95.5

Q ss_pred             CCcceEEEEEecCC------CCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEEEEEEeCC
Q 031119           45 ASSSSVSVVITGLG------PDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNP  114 (165)
Q Consensus        45 ~~~eNVSVvit~v~------~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~lEYtv~~P  114 (165)
                      ..++||+|+|+|+.      .+.++|++||+|++|+++|.+.++    .++.+.++|+++.++    ++||.|||     
T Consensus       145 ~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~----g~~~~e~eLl~a~~re~dGktYY~~E~-----  215 (262)
T PLN00066        145 DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELI----GEPVEEGKVLSMEVAEHSGRTYYQFEL-----  215 (262)
T ss_pred             CCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhc----CCCccccceeEeeeeecCCcEEEEEEE-----
Confidence            56899999999996      144799999999999999999876    557789999999998    77999999     


Q ss_pred             CCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119          115 GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus       115 ~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                         .||+|++|+|.+    ||||||++|+||+||.|+++.|++|++||+|+
T Consensus       216 ---~rH~LasaTV~~----GrLYt~~asape~rW~k~~~~lr~v~dSF~V~  259 (262)
T PLN00066        216 ---PPHTLVTATAAG----NRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV  259 (262)
T ss_pred             ---eCceEEEEEEEC----CEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence               389999999987    59999999999999999999999999999985

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.66  E-value=0.0016  Score=49.00  Aligned_cols=111  Identities=14%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             eEEEecCCC--CCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEEEE
Q 031119           36 SITAFYPQE--ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEY  109 (165)
Q Consensus        36 ~V~Af~P~~--~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~lEY  109 (165)
                      ++-+|-++.  ....|+.|...+++++       .+.++..++.++.+-+     --..-++++.+.-    ..-+.+||
T Consensus        14 t~nv~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~~~~~~~~~l~~~~a~~l~~   81 (130)
T PF08786_consen   14 TMNVLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQLVERQPITLGGRPARELEY   81 (130)
T ss_dssp             -BEEEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-EEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcEEEeeEEEEeCCCCeEEEEE
Confidence            344554443  3466666666677666       3677888888887732     1223334443332    36889999


Q ss_pred             EEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhcee
Q 031119          110 TLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF  162 (165)
Q Consensus       110 tv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF  162 (165)
                      +...++. .-|-.-++.+-.+   +++++||..++....++.++.++++++||
T Consensus        82 ~~~~~g~-~v~Q~q~~~~~~~---~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf  130 (130)
T PF08786_consen   82 SFRSGGQ-PVYQRQAAVLLPG---RRVLVFTYTAPGPFTEEQRAHWEAILKSF  130 (130)
T ss_dssp             EEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred             EEeeCCE-EEEEEEEEEEECC---CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9998885 5676666554442   59999999999999999999999999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein []

Probab=96.21  E-value=0.18  Score=41.33  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             ccCcee-ccccCCCceeEEEecCC-CCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEec
Q 031119           21 ANDWQL-GAGEPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC   98 (165)
Q Consensus        21 ~~~W~~-~~g~~~g~k~V~Af~P~-~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA   98 (165)
                      +.||+. ........-.+++.-.. +.-..|+-|+++.+..||       +|+|+.+.=-..+.    .-||-+  -+++
T Consensus        38 P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~~----~l~g~~--~~~~  104 (175)
T PF10738_consen   38 PPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADAQ----NLPGFR--ELDG  104 (175)
T ss_pred             CcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhHh----hCcCcc--cccC
Confidence            489996 44456667777777763 233799999999998887       57776554222221    223444  3333


Q ss_pred             eec--C--ceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119           99 KAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus        99 ~~r--k--~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      ..-  .  .-+.+|-+-..++ .+||...-..|.-++-.--|..||+++.+.+-....+..+.|++.|+|
T Consensus       105 s~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~I  173 (175)
T PF10738_consen  105 SPSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTI  173 (175)
T ss_pred             CccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence            222  2  2567886666666 367776664444444334577899999999999999999999999997

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=84.52  E-value=17  Score=29.51  Aligned_cols=120  Identities=18%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             CCCcee--EEEecCCCCCcceEEEEEe--cCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEe-ceec-Cce
Q 031119           31 PNGFKS--ITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-CKAS-KGF  104 (165)
Q Consensus        31 ~~g~k~--V~Af~P~~~~~eNVSVvit--~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~Lid-A~~r-k~y  104 (165)
                      ++.++|  |=+|--+....+-.|.+||  ++.+| .      +-.++.++.+..+-+.  - ||-+.+=-. ..-- .--
T Consensus        14 P~~w~DrSvNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~--L-pgy~~~~~~e~~v~~~aa   83 (147)
T COG5435          14 PAAWQDRSVNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQ--L-PGYELHHRREIEVGGAAA   83 (147)
T ss_pred             cchhccceEEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhh--C-CCeEEeeccccccCcccc
Confidence            445554  4446555555677777887  44444 2      3456777777766321  1 332221111 0000 225


Q ss_pred             EEEEEEEeCC-CCCce-eEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          105 YYIEYTLQNP-GESRK-HLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       105 Y~lEYtv~~P-~~~~R-H~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      -.+||.-+.| .+++| |... +.+.++   .++-.||+.|+-.--++-+...+++|.||..
T Consensus        84 ~~~~y~w~~~~~~~r~v~q~~-~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p  141 (147)
T COG5435          84 PLLDYQWTSPEGEQRRVQQRQ-VFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP  141 (147)
T ss_pred             ceeEEEeecCCCCCceEEEEE-eecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence            5677888875 43323 3333 466665   7999999999999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-18
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-13
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	3e-07

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score = 76.8 bits (188), Expect = 2e-18
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 11/146 (7%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
           N W     +         F        ++SV+I+ +  D T +   G         +  +
Sbjct: 30  NGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKT-LTDLGTATDVGYRFMKTV 88

Query: 82  DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLY 137
           +          A+LI+ +A     + +Y +EY +       +H  +++         +L 
Sbjct: 89  ND--ASQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNRG----KLI 142

Query: 138 TVTGQFVEEESEKYGSNIEKAVASFR 163
           T      E+  +   S  +   +SF 
Sbjct: 143 TFDLSTAEDRWDTVKSLFDTVASSFH 168

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score = 63.7 bits (154), Expect = 1e-13
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 18/150 (12%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
             W     E         F+    ++ +VSVV+  +    + +E  G  E   D L+  +
Sbjct: 24  RGWVQVQVEDPVDVV---FHDIIETTENVSVVVNTVASTKS-LEELGSPEEVGDRLLRNI 79

Query: 82  DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWY 133
                   G ++ LI   +     K +Y +EY +  PG      ++H  S+I ++     
Sbjct: 80  IA--PSESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRG--- 134

Query: 134 NRLYTVTGQFVEEESEKYGSNIEKAVASFR 163
            ++YT++    EE   K     +  V+SF 
Sbjct: 135 -KVYTLSVSAPEERWPKVEDQFKTIVSSFT 163

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 24/152 (15%)

Query: 30  EPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW---- 85
           E      +  F     ++S+V V IT    D   +  FG  E F   +   L R      
Sbjct: 30  EVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSITDFGSPEQFLSQVDYLLGRQAYSGK 87

Query: 86  -------RRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGW 132
                         A +++   +    K +YY+    +     E  KH      +     
Sbjct: 88  TDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDG-- 145

Query: 133 YNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 163
             +LY    Q  ++   K     +E    SF 
Sbjct: 146 --KLYICKAQAGDKRWFKGAKKFVENTATSFS 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	99.98
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	99.95
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	99.96
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.53
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	96.66

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=99.98  E-value=8.2e-32  Score=210.14  Aligned_cols=133  Identities=25%  Similarity=0.424  Sum_probs=116.5

Q ss_pred             ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCC--CCeeEEEec
Q 031119           21 ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDC   98 (165)
Q Consensus        21 ~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~pp--g~~A~LidA   98 (165)
                      +++|...+.. .  ...++|.|+...++||+|+|+|+++ +++|++||+|++||++|++...    ++|  ++.++|+++
T Consensus        23 P~~W~~~~~~-~--g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~----~~~~~~~~~~l~~a   94 (165)
T 2xb3_A           23 PRGWVQVQVE-D--PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII----APSESGRSSALIAA   94 (165)
T ss_dssp             ETTEEEECCC-T--TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT----SCTTSSCEEEEEEE
T ss_pred             CCCCeEecCC-C--CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh----cCCCCCcceEEEEe
Confidence            4799975531 1  3578899998889999999999987 4799999999999999999865    444  899999999


Q ss_pred             eec----CceEEEEEEEeCCC----CCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119           99 KAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus        99 ~~r----k~yY~lEYtv~~P~----~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                      .+|    +.||+|||+++.|+    +..||.|+++++.+    ||||||++|+||+||+|+++.|++|++||+++
T Consensus        95 ~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~~l~~v~~SF~v~  165 (165)
T 2xb3_A           95 TSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY  165 (165)
T ss_dssp             EEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHHHHHHHHHTCEEC
T ss_pred             eeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHHHHHHHHhhEEeC
Confidence            998    56999999999998    35899999999875    59999999999999999999999999999986

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=99.95  E-value=1.8e-33  Score=222.19  Aligned_cols=136  Identities=16%  Similarity=0.247  Sum_probs=120.2

Q ss_pred             ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCC--CCeeEEEec
Q 031119           21 ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDC   98 (165)
Q Consensus        21 ~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~pp--g~~A~LidA   98 (165)
                      +++|+..++..++....++|.++...++||+|+|+|++++ ++|++||+|++||++|++.+.    ++|  ++.++||++
T Consensus        29 P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~~----~~~~~~~~a~li~a  103 (170)
T 2lnj_A           29 PNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTVN----DASQGDRQAELINA  103 (170)
Confidence            4899976655444456789999999999999999999886 799999999999999999876    444  899999999


Q ss_pred             eec----CceEEEEEEEeCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeeeC
Q 031119           99 KAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI  165 (165)
Q Consensus        99 ~~r----k~yY~lEYtv~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v~  165 (165)
                      .+|    +.||++||+++.|+...||.++++++.+    ||||||++|+||++|+|.++.|++|++||+|+
T Consensus       104 ~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~v~~SF~v~  170 (170)
T 2lnj_A          104 EARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDTVASSFHVY  170 (170)
Confidence            998    5699999999999435899999988865    69999999999999999999999999999985

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=99.96  E-value=1.7e-29  Score=202.63  Aligned_cols=137  Identities=20%  Similarity=0.261  Sum_probs=102.4

Q ss_pred             ccCceecc-ccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHH----HHHHhhccccCCC-CCC-----
Q 031119           21 ANDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF----ADTLVSGLDRSWR-RPP-----   89 (165)
Q Consensus        21 ~~~W~~~~-g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~ev----ae~Lv~~~~rs~~-~pp-----   89 (165)
                      +++|.... -+..|  ..++|..+-+.++||||+|+|++.  ++|++||+|++|    |+.|.+....+.. ..+     
T Consensus        22 P~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~   97 (177)
T 1v2b_A           22 PSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESD   97 (177)
T ss_dssp             ETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC------------------
T ss_pred             CCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccC
Confidence            47998422 11222  356677777789999999999944  799999999995    5555554432100 012     


Q ss_pred             -CCeeEEEeceec----CceEEEEEEEeCCCC--CceeEEEEEEeecCCccceEEEEeccccchhhHHh-HHHHHHhhce
Q 031119           90 -GVAAKLIDCKAS----KGFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVAS  161 (165)
Q Consensus        90 -g~~A~LidA~~r----k~yY~lEYtv~~P~~--~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~-~~~~~~vv~S  161 (165)
                       .+.|+||+|.+|    +.||++||.++.|+.  ..||+|++++|.+    ||||||++|+||+||+|. ++.|++|++|
T Consensus        98 ~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~e~~W~k~~~~~l~~v~~S  173 (177)
T 1v2b_A           98 AVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATS  173 (177)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHT
T ss_pred             cccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecCHHHhhhhHHHHHHHHHhh
Confidence             388999999999    669999999999982  4799999999976    599999999999999995 9999999999


Q ss_pred             eeeC
Q 031119          162 FRFI  165 (165)
Q Consensus       162 F~v~  165 (165)
                      |+|.
T Consensus       174 F~v~  177 (177)
T 1v2b_A          174 FSLA  177 (177)
T ss_dssp             CEEC
T ss_pred             eecC
Confidence            9983

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.53  E-value=0.0015  Score=49.67  Aligned_cols=113  Identities=12%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             EEEecCC-CCCc--ceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCC-CeeEEEeceec-CceEEEEEEE
Q 031119           37 ITAFYPQ-EASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG-VAAKLIDCKAS-KGFYYIEYTL  111 (165)
Q Consensus        37 V~Af~P~-~~~~--eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg-~~A~LidA~~r-k~yY~lEYtv  111 (165)
                      +.+|..+ +...  -|+.|...++++|       .+.++..++-++.+-+.  - |+ +...+-.+.-+ ..--.+||+-
T Consensus        24 ~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~--l-~~y~~~~~~~~~l~g~~a~~~e~~~   93 (148)
T 1tu1_A           24 INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ--L-PGFKLHKRWDINIHGHAAVLLDYQW   93 (148)
T ss_dssp             BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH--S-TTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh--C-cCcEEeeeEeEEEcCCcEEEEEEEE
Confidence            4555543 3222  5666666677666       35666666655554211  1 21 11111111112 2357788888


Q ss_pred             eCCCCCceeEEEEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          112 QNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       112 ~~P~~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      ..++ ..+|-+-++.+..    +++|.||.+|+...|+..+..++.+++||++
T Consensus        94 ~~~g-~~~~Q~q~~~~~~----~~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~  141 (148)
T 1tu1_A           94 QREG-RDLMLRQVFIERR----PAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (148)
T ss_dssp             EETT-EEEEEEEEEECCS----SSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             ccCC-EEEEEEEEEEEEC----CeEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence            8777 4799999866644    2999999999999999999999999999985

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=96.66  E-value=0.11  Score=41.13  Aligned_cols=140  Identities=12%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             ccchhhhhhhhh------ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccc
Q 031119            9 CSFPAIVSYALA------ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD   82 (165)
Q Consensus         9 ~~~~~~~~~~~~------~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~   82 (165)
                      ..||-..-+|+.      ++||++.....+ +=-+..=.|++.=..||-|.+..++.|+     |   ++.-..|-+.+.
T Consensus         7 ~~~ps~~fp~~p~~~v~~P~gWe~~~~~~~-~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~   77 (161)
T 3lyd_A            7 IRYPSTEFPALTGFTVPIPETWQPDPTMGT-QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT   77 (161)
T ss_dssp             EEESCSSSCCCCEEEEECCTTEEECTTSSS-SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT
T ss_pred             eeCCccccCCCceeeccCCCCceEcCCCCc-eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh
Confidence            345544444443      589998765444 2222223334455899999999998885     2   333333333221


Q ss_pred             cCCCCCCCCeeEEEeceec--CceEEEEEEEeCCCCCceeE--EEEEEeecCCccceEEEE--eccccchhhHHhHHHHH
Q 031119           83 RSWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIE  156 (165)
Q Consensus        83 rs~~~ppg~~A~LidA~~r--k~yY~lEYtv~~P~~~~RH~--la~V~v~~~G~~grLYTl--taq~~E~rW~k~~~~~~  156 (165)
                          +-|+.+-.-..-.+.  ..-|.+||.-..|.- .+|.  +..+.|.++   +..|.+  |++|.+.+-+.+.+.++
T Consensus        78 ----~lp~~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~---~v~~vv~lt~T~~~~q~~~~~~d~q  149 (161)
T 3lyd_A           78 ----QLPDYAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHP---HAVDIIQLTATCAGDQTADYWDTFR  149 (161)
T ss_dssp             ----TSTTCEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECS---SCEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ----hCCCcEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecC---CEEEEEEEEEEeccccchHHHHHHH
Confidence                225555544444444  348999999988885 4663  566788887   467766  99999999999999999


Q ss_pred             HhhceeeeC
Q 031119          157 KAVASFRFI  165 (165)
Q Consensus       157 ~vv~SF~v~  165 (165)
                      ++++|++|.
T Consensus       150 ~iv~sl~v~  158 (161)
T 3lyd_A          150 LMHADLTVQ  158 (161)
T ss_dssp             HHHHTCEEE
T ss_pred             HHhheeEec
Confidence            999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	2e-14

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 65.1 bits (158), Expect = 2e-14
 Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 25/160 (15%)

Query: 22  NDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 81
           + W     E      +  F     ++S+V V IT    D   +  FG  E F   +   L
Sbjct: 17  SKW-NPNKEVEYPGQVLRFEDNFDATSNVIVAITP--TDKKSITDFGSPEQFLSQVDYLL 73

Query: 82  DRSW-----------RRPPGVAAKLIDCKAS----KGFYYIEYTLQNP--GESRKHLFSA 124
            R                    A +++   +    K +YY+    +     E  KH    
Sbjct: 74  GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVT 133

Query: 125 IGMASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 163
             +       +LY    Q  ++   K     +E    SF 
Sbjct: 134 ATV----NDGKLYICKAQAGDKRWFKGAKKFVENTATSFS 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	99.97
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.22

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.97  E-value=1.8e-31  Score=208.68  Aligned_cols=137  Identities=21%  Similarity=0.278  Sum_probs=109.3

Q ss_pred             ccCceeccccCCCceeEEEecCCCCCcceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCC-----------CC
Q 031119           21 ANDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRR-----------PP   89 (165)
Q Consensus        21 ~~~W~~~~g~~~g~k~V~Af~P~~~~~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~-----------pp   89 (165)
                      +++|... .+..+....+.|.++...++||+|+|+|+  ++++|++||+|+++++++...+.+.+..           .+
T Consensus        16 P~~W~~~-~~~~~~g~d~~f~d~~~~~~nv~V~v~p~--~~~sl~~~G~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~   92 (171)
T d1v2ba_          16 PSKWNPN-KEVEYPGQVLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDA   92 (171)
T ss_dssp             ETTCEEC-CCCCSTTEEEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC------------------C
T ss_pred             CCCCcee-cccCCCCceEEEeccccCCceEEEEEecC--CCcchhhccChHHHHHHHHHHHhhhhhcccccccccccccc
Confidence            5899642 22334445677999988999999999998  5679999999999999988777655433           24


Q ss_pred             CCeeEEEeceec----CceEEEEEEEeCCC--CCceeEEEEEEeecCCccceEEEEeccccchhhHHh-HHHHHHhhcee
Q 031119           90 GVAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY-GSNIEKAVASF  162 (165)
Q Consensus        90 g~~A~LidA~~r----k~yY~lEYtv~~P~--~~~RH~la~V~v~~~G~~grLYTltaq~~E~rW~k~-~~~~~~vv~SF  162 (165)
                      ++.|+|++|++|    +.||+|||.++.|+  +..||+|++++|.+    ||||||++||||+||+|. ++.|++|++||
T Consensus        93 ~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~----grLYtl~~~~pe~~w~~~~~~~l~~~v~SF  168 (171)
T d1v2ba_          93 VAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAGDKRWFKGAKKFVENTATSF  168 (171)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEEGGGCSTTTTHHHHHHHHTC
T ss_pred             cceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeC----CEEEEEEEecCHHHhhhhhHHHHHHHHhce
Confidence            789999999999    56999999999985  34799999999977    599999999999999985 67799999999


Q ss_pred             ee
Q 031119          163 RF  164 (165)
Q Consensus       163 ~v  164 (165)
                      +|
T Consensus       169 ~v  170 (171)
T d1v2ba_         169 SL  170 (171)
T ss_dssp             EE
T ss_pred             Ee
Confidence            97

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.22  E-value=5.7e-06  Score=60.59  Aligned_cols=101  Identities=12%  Similarity=0.096  Sum_probs=75.3

Q ss_pred             cceEEEEEecCCCCccccccCCCHHHHHHHHhhccccCCCCCCCCeeEEEeceec----CceEEEEEEEeCCCCCceeEE
Q 031119           47 SSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLF  122 (165)
Q Consensus        47 ~eNVSVvit~v~~dft~L~sfG~p~evae~Lv~~~~rs~~~ppg~~A~LidA~~r----k~yY~lEYtv~~P~~~~RH~l  122 (165)
                      .-|+.|...+++++       .+++++.++.+..+-+..   ++  -++++.+.-    ..-+.+||+-..++. ..|-.
T Consensus        37 ~~~lvIsr~~l~~~-------~~l~~~~~~~~~~l~~~l---~~--~~~~~~~~~~l~g~pa~~~~~t~~~~~~-~v~Q~  103 (144)
T d1tu1a_          37 EASFVISRDASQGD-------APFADYVARQLENAEKQL---PG--FKLHKRWDINIHGHAAVLLDYQWQREGR-DLMLR  103 (144)
T ss_dssp             CEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHHS---TT--CEEEEEEEEEETTEEEEEEEEEEEETTE-EEEEE
T ss_pred             ceEEEEEeecCCCC-------CCHHHHHHHHHHHHHhhC---CC--cEEEeeEecccCCCcEEEEEEEEeeCCE-eEEEE
Confidence            34555555566555       378899999988875321   22  345554433    447899999998884 68888


Q ss_pred             EEEEeecCCccceEEEEeccccchhhHHhHHHHHHhhceeee
Q 031119          123 SAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF  164 (165)
Q Consensus       123 a~V~v~~~G~~grLYTltaq~~E~rW~k~~~~~~~vv~SF~v  164 (165)
                      .++.+ .+   ++.|+|+..++...++..++.++++++||+.
T Consensus       104 q~~~~-~~---~~~~~lt~t~~~~~~~~~~~~~~~il~Sf~p  141 (144)
T d1tu1a_         104 QVFIE-RR---PAVLITTLTTTPADLPHHEPAWKQAMQTLVP  141 (144)
T ss_dssp             EEEEC-CS---SSEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred             EEEEE-eC---CCEEEEEEecCCcCCHHHHHHHHHHHHhCcc
Confidence            88555 44   4899999999999999999999999999974