Citrus Sinensis ID: 031139

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
ccccccccccccccEEEEEEccccccccccccccEEEcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccEEEccccccccccEEEEcccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHcc
ccccccccccccccEEEEEEccEEEEEEcccccEEEEcccHHcccccccccHHHHcccHHHHHHHHHHHHHccccccccccEEEEcccccccEEEEEEcccEEccccccccEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHccc
mtfkvqtlsfstktslkiskgdisrwcvdrssdaivsptneiLLLGGFTAAAIheaagpdlqkacyqipeaqprvrcppgearitpgfklpvshvihtvgpvfnfhcnpedilrsaykyppdeaATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
mtfkvqtlsfstktslkiskgdisrwCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
***************LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKA******
************KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
**********STKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTFKVQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
Q8P5Z8179 Macro domain-containing p yes no 0.733 0.675 0.384 8e-19
Q8PHB6179 Macro domain-containing p yes no 0.733 0.675 0.377 1e-18
Q87JZ5170 Macro domain-containing p yes no 0.830 0.805 0.323 2e-18
Q8TQD0195 Macro domain-containing p yes no 0.927 0.784 0.338 1e-17
Q8RB30175 Macro domain-containing p yes no 0.872 0.822 0.337 7e-17
Q8KAE4172 Macro domain-containing p yes no 0.775 0.744 0.365 1e-16
Q8Q0F9187 Macro domain-containing p yes no 0.757 0.668 0.359 1e-16
Q8Y2K1171 Macro domain-containing p yes no 0.824 0.795 0.325 2e-16
Q9HJ67196 Uncharacterized protein T yes no 0.793 0.668 0.353 4e-16
Q8EYT0175 Macro domain-containing p yes no 0.854 0.805 0.340 5e-16
>sp|Q8P5Z8|Y3184_XANCP Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1 Back     alignment and function desciption
 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 30/151 (19%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           +++ +GDI++  VD     IV+  NE LL GG    AIH AAGP L +AC  +PE +P V
Sbjct: 3   IEVWQGDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGV 58

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVF--NFHCNPEDI-------LRSA---------- 116
           RCP GE RIT GF L   H+ HTVGPV+    H  PE +       L+ A          
Sbjct: 59  RCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAF 118

Query: 117 -------YKYPPDEAATIAISTVKEFANDFK 140
                  Y YP  +AA IA++  +++    K
Sbjct: 119 PAISCGIYGYPLYQAARIAVTETRDWQRSHK 149

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)
>sp|Q8PHB6|Y3343_XANAC Macro domain-containing protein XAC3343 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=XAC3343 PE=4 SV=2 Back     alignment and function description
>sp|Q87JZ5|Y4103_VIBPA Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=4 SV=1 Back     alignment and function description
>sp|Q8TQD0|Y1614_METAC Macro domain-containing protein MA_1614 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_1614 PE=4 SV=1 Back     alignment and function description
>sp|Q8RB30|Y995_THETN Macro domain-containing protein TTE0995 OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=TTE0995 PE=4 SV=1 Back     alignment and function description
>sp|Q8KAE4|Y2219_CHLTE Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1 Back     alignment and function description
>sp|Q8Q0F9|Y177_METMA Macro domain-containing protein MM_0177 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0177 PE=4 SV=1 Back     alignment and function description
>sp|Q8Y2K1|Y334_RALSO Macro domain-containing protein RSc0334 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0334 PE=4 SV=1 Back     alignment and function description
>sp|Q9HJ67|Y1105_THEAC Uncharacterized protein Ta1105 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=Ta1105 PE=4 SV=2 Back     alignment and function description
>sp|Q8EYT0|Y4133_LEPIN Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=LA_4133 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
297736490190 unnamed protein product [Vitis vinifera] 0.951 0.826 0.576 3e-53
225448685231 PREDICTED: macro domain-containing prote 0.951 0.679 0.576 4e-53
224126573180 predicted protein [Populus trichocarpa] 0.903 0.827 0.586 4e-51
255559685 269 Protein LRP16, putative [Ricinus communi 0.933 0.572 0.547 4e-51
23397339239 unknown protein [Arabidopsis thaliana] 0.951 0.656 0.538 7e-51
297827693256 hypothetical protein ARALYDRAFT_483117 [ 0.951 0.613 0.538 9e-51
449491648247 PREDICTED: macro domain-containing prote 0.933 0.623 0.547 1e-50
357436403233 Appr-1-p processing enzyme family protei 0.939 0.665 0.538 5e-50
30688336257 appr-1-p processing enzyme family protei 0.951 0.610 0.532 6e-50
449457407247 PREDICTED: macro domain-containing prote 0.933 0.623 0.541 7e-50
>gi|297736490|emb|CBI25361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 124/182 (68%), Gaps = 25/182 (13%)

Query: 8   LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQ 67
           L+ S  +SLKI KGDI++W VD SSDAIV+P NE +L GG    AIH AAGP+L  ACY+
Sbjct: 8   LALSPTSSLKIQKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELVAACYK 67

Query: 68  IPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYK--------- 118
           +PE +P +RCP GEARIT GFKLP +HVIHTVGP+++   NPE  L+SAY          
Sbjct: 68  VPEVRPGIRCPTGEARITQGFKLPAAHVIHTVGPIYDVDSNPEASLKSAYANCLSLAKEN 127

Query: 119 ----------------YPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 162
                           YP DEAAT+AISTVKEF  D KEVHF+LF+DDIYNVWL KA EL
Sbjct: 128 NVQYIAFPAISCGVFGYPYDEAATVAISTVKEFGKDLKEVHFVLFSDDIYNVWLNKANEL 187

Query: 163 LQ 164
           LQ
Sbjct: 188 LQ 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448685|ref|XP_002280352.1| PREDICTED: macro domain-containing protein VPA0103 [Vitis vinifera] gi|147769460|emb|CAN70345.1| hypothetical protein VITISV_012577 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126573|ref|XP_002319871.1| predicted protein [Populus trichocarpa] gi|222858247|gb|EEE95794.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255559685|ref|XP_002520862.1| Protein LRP16, putative [Ricinus communis] gi|223539993|gb|EEF41571.1| Protein LRP16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|23397339|gb|AAK93649.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827693|ref|XP_002881729.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] gi|297327568|gb|EFH57988.1| hypothetical protein ARALYDRAFT_483117 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449491648|ref|XP_004158963.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357436403|ref|XP_003588477.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|355477525|gb|AES58728.1| Appr-1-p processing enzyme family protein [Medicago truncatula] gi|388499270|gb|AFK37701.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|30688336|ref|NP_030605.2| appr-1-p processing enzyme family protein [Arabidopsis thaliana] gi|24030242|gb|AAN41297.1| unknown protein [Arabidopsis thaliana] gi|330254759|gb|AEC09853.1| appr-1-p processing enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449457407|ref|XP_004146440.1| PREDICTED: macro domain-containing protein VPA0103-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
TAIR|locus:2061923257 AT2G40600 "AT2G40600" [Arabido 0.666 0.428 0.590 4.7e-50
UNIPROTKB|Q74FT0173 ymdB "O-acetyl-ADP-ribose deac 0.581 0.554 0.439 7.3e-20
TIGR_CMR|GSU_0526173 GSU_0526 "conserved hypothetic 0.581 0.554 0.439 7.3e-20
UNIPROTKB|P0A8D6177 ymdB "O-acetyl-ADP-ribose deac 0.6 0.559 0.405 1.1e-17
ZFIN|ZDB-GENE-040912-100248 macrod1 "MACRO domain containi 0.563 0.375 0.373 6.6e-16
RGD|628701258 Macrod1 "MACRO domain containi 0.539 0.344 0.407 3.5e-14
UNIPROTKB|E2RAG4324 MACROD1 "Uncharacterized prote 0.648 0.330 0.390 5.6e-14
CGD|CAL0006380 564 orf19.2285 [Candida albicans ( 0.496 0.145 0.410 1.8e-13
UNIPROTKB|Q59Z77 564 CaO19.2285 "Putative uncharact 0.496 0.145 0.410 1.8e-13
UNIPROTKB|Q2KHU5325 MACROD1 "O-acetyl-ADP-ribose d 0.648 0.329 0.382 3.5e-13
TAIR|locus:2061923 AT2G40600 "AT2G40600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 352 (129.0 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 65/110 (59%), Positives = 82/110 (74%)

Query:     9 SFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQI 68
             + S  + LKI KGDI++W VD SSDAIV+P NE +L GG    AIH AAGP L+ ACY++
Sbjct:    75 NLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEV 134

Query:    69 PEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYK 118
             PE +P VRCP GEARITPGF LP S VIHTVGP+++   NP++ L ++YK
Sbjct:   135 PEVRPGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYK 184
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
UNIPROTKB|Q74FT0 ymdB "O-acetyl-ADP-ribose deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0526 GSU_0526 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8D6 ymdB "O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-100 macrod1 "MACRO domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|628701 Macrod1 "MACRO domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAG4 MACROD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
CGD|CAL0006380 orf19.2285 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59Z77 CaO19.2285 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHU5 MACROD1 "O-acetyl-ADP-ribose deacetylase MACROD1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8EYT0Y4133_LEPINNo assigned EC number0.34070.85450.8057yesno
Q97AU0Y719_THEVONo assigned EC number0.30640.92120.8172yesno
Q87JZ5Y4103_VIBPANo assigned EC number0.32330.83030.8058yesno
Q8RB30Y995_THETNNo assigned EC number0.33700.87270.8228yesno
Q8RHQ2Y1951_FUSNNNo assigned EC number0.30210.86060.8114yesno
Q72M93Y3295_LEPICNo assigned EC number0.33510.85450.8057yesno
Q9RS39Y2288_DEIRANo assigned EC number0.30330.83030.8058yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029446001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (190 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00003012001
RecName- Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-;; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D [...] (153 aa)
•       0.619
GSVIVG00037524001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)
•       0.586
GSVIVG00019349001
RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)
•       0.563
GSVIVG00006976001
SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (469 aa)
•       0.531
GSVIVG00036606001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (570 aa)
•       0.518
TIL
SubName- Full=Temperature-induced lipocalin (Putative uncharacterized protein) (Chromosome unde [...] (185 aa)
•       0.516
GSVIVG00035677001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (401 aa)
•       0.460
GSVIVG00035675001
RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (405 aa)
•       0.455
GSVIVG00034276001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (378 aa)
•       0.452
GSVIVG00027935001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (141 aa)
•       0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
cd02908165 cd02908, Macro_Appr_pase_like, Macro domain, Appr- 6e-44
PRK00431177 PRK00431, PRK00431, RNase III inhibitor; Provision 1e-39
COG2110179 COG2110, COG2110, Predicted phosphatase homologous 1e-30
cd02907175 cd02907, Macro_Af1521_BAL_like, Macro domain, Af15 1e-27
PRK04143264 PRK04143, PRK04143, hypothetical protein; Provisio 4e-26
pfam01661117 pfam01661, Macro, Macro domain 6e-26
cd02906147 cd02906, Macro_1, Macro domain, Unknown family 1 7e-24
smart00506133 smart00506, A1pp, Appr-1"-p processing enzyme 6e-22
cd02905140 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_lik 2e-20
cd02749147 cd02749, Macro, Macro domain, a high-affinity ADP- 2e-17
cd03330133 cd03330, Macro_2, Macro domain, Unknown family 2 1e-13
cd02903137 cd02903, Macro_BAL_like, Macro domain, BAL_like fa 2e-12
>gnl|CDD|239236 cd02908, Macro_Appr_pase_like, Macro domain, Appr-1"-pase_like family Back     alignment and domain information 
 Score =  142 bits (360), Expect = 6e-44
 Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 39/172 (22%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           ++I +GDI++  VD    AIV+  N  LL GG    AIH AAGP+L + C ++       
Sbjct: 2   IEIIQGDITKLEVD----AIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELRG----- 52

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVFN-FHCNPEDILRSAYK---------------- 118
            CP GEA IT G+ LP  +VIHTVGPV+     N  ++L S Y+                
Sbjct: 53  -CPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAF 111

Query: 119 ---------YPPDEAATIAISTVKEFA---NDFKEVHFILFTDDIYNVWLKK 158
                    YP DEAA IA+ TV+EF    +  + V F+ F+++ Y ++ K 
Sbjct: 112 PAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVCFSEEDYEIYEKA 163

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate. Length = 165
>gnl|CDD|234759 PRK00431, PRK00431, RNase III inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|225021 COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>gnl|CDD|239235 cd02907, Macro_Af1521_BAL_like, Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>gnl|CDD|235225 PRK04143, PRK04143, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|216634 pfam01661, Macro, Macro domain Back     alignment and domain information
>gnl|CDD|239234 cd02906, Macro_1, Macro domain, Unknown family 1 Back     alignment and domain information
>gnl|CDD|214701 smart00506, A1pp, Appr-1"-p processing enzyme Back     alignment and domain information
>gnl|CDD|239233 cd02905, Macro_GDAP2_like, Macro domain, GDAP2_like family Back     alignment and domain information
>gnl|CDD|239150 cd02749, Macro, Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>gnl|CDD|239446 cd03330, Macro_2, Macro domain, Unknown family 2 Back     alignment and domain information
>gnl|CDD|239231 cd02903, Macro_BAL_like, Macro domain, BAL_like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
cd02904186 Macro_H2A_like Macro domain, Macro_H2A_like family 100.0
cd02907175 Macro_Af1521_BAL_like Macro domain, Af1521- and BA 100.0
PRK04143264 hypothetical protein; Provisional 100.0
cd02908165 Macro_Appr_pase_like Macro domain, Appr-1"-pase_li 100.0
PRK00431177 RNase III inhibitor; Provisional 100.0
cd02905140 Macro_GDAP2_like Macro domain, GDAP2_like family. 100.0
COG2110179 Predicted phosphatase homologous to the C-terminal 100.0
cd02906147 Macro_1 Macro domain, Unknown family 1. The macro 100.0
cd02903137 Macro_BAL_like Macro domain, BAL_like family. The 99.97
cd03330133 Macro_2 Macro domain, Unknown family 2. The macro 99.95
KOG2633200 consensus Hismacro and SEC14 domain-containing pro 99.92
cd02900186 Macro_Appr_pase Macro domain, Appr-1"-pase family. 99.92
smart00506133 A1pp Appr-1"-p processing enzyme. Function determi 99.88
PRK13341725 recombination factor protein RarA/unknown domain f 99.88
cd02749147 Macro Macro domain, a high-affinity ADP-ribose bin 99.87
PF01661118 Macro: Macro domain; InterPro: IPR002589 The Macro 99.82
cd02901140 Macro_Poa1p_like Macro domain, Poa1p_like family. 99.66
PHA02595154 tk.4 hypothetical protein; Provisional 99.07
PF14519280 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJ 98.29
cd03331152 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like fam 96.52
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family Back     alignment and domain information 
Probab=100.00  E-value=1.4e-40  Score=257.94  Aligned_cols=143  Identities=22%  Similarity=0.378  Sum_probs=130.3

Q ss_pred             eeecCCCceEEEEEccc--ceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEE
Q 031139            7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI   84 (165)
Q Consensus         7 ~~~~~~~~~i~i~~GdI--t~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~v   84 (165)
                      .+++..|.++.|++|||  |++++    |||||++|++|.++|||++||+++||++|++||+++.+.+  +++++|++++
T Consensus        11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~~~i   84 (186)
T cd02904          11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSN--GPLEIAGAAV   84 (186)
T ss_pred             chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhc--CCCCCCCEEE
Confidence            45667899999999999  99887    9999999999999999999999999999999999876433  6999999999


Q ss_pred             ccCCCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc--
Q 031139           85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN--  137 (165)
Q Consensus        85 T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~--  137 (165)
                      |++|+||||||||+|||.|+.+ ..+++|++||                         |||++++|++|++++++|++  
T Consensus        85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~  163 (186)
T cd02904          85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST  163 (186)
T ss_pred             ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999764 3567888887                         99999999999999999995  


Q ss_pred             ---CCCEEEEEecChHHHHHHH
Q 031139          138 ---DFKEVHFILFTDDIYNVWL  156 (165)
Q Consensus       138 ---~~~~I~~V~~~~~~~~~f~  156 (165)
                         ++++|+||+|+++.+++|.
T Consensus       164 ~~~~l~~I~fv~~~~~~~~~y~  185 (186)
T cd02904         164 MSSSIKQIYFVLFDSESIGIYV  185 (186)
T ss_pred             CCCCccEEEEEECCHHHHHHhh
Confidence               4789999999999999984

The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family Back     alignment and domain information
>PRK04143 hypothetical protein; Provisional Back     alignment and domain information
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family Back     alignment and domain information
>PRK00431 RNase III inhibitor; Provisional Back     alignment and domain information
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family Back     alignment and domain information
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only] Back     alignment and domain information
>cd02906 Macro_1 Macro domain, Unknown family 1 Back     alignment and domain information
>cd02903 Macro_BAL_like Macro domain, BAL_like family Back     alignment and domain information
>cd03330 Macro_2 Macro domain, Unknown family 2 Back     alignment and domain information
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family Back     alignment and domain information
>smart00506 A1pp Appr-1"-p processing enzyme Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases) Back     alignment and domain information
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands Back     alignment and domain information
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family Back     alignment and domain information
>PHA02595 tk Back     alignment and domain information
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A Back     alignment and domain information
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1spv_A184 Crystal Structure Of The Putative Phosphatase Of Es 6e-15
2x47_A235 Crystal Structure Of Human Macrod1 Length = 235 2e-11
3q6z_A214 Human Parp14 (Artd8)-Macro Domain 1 In Complex With 5e-11
2dx6_A159 Crystal Structure Of Conserved Hypothetical Protein 6e-08
3v45_A167 Crystal Structure Of De Novo Designed Serine Hydrol 2e-07
4ess_A167 Crystal Structure Of E6dL155R VARIANT OF DE NOVO DE 2e-07
4etk_A167 Crystal Structure Of E6aL130DA155H VARIANT OF DE NO 2e-07
4etj_A167 Crystal Structure Of E6h Variant Of De Novo Designe 2e-07
4gvv_A167 Crystal Structure Of De Novo Design Serine Hydrolas 2e-07
2bfr_A192 The Macro Domain Is An Adp-Ribose Binding Module Le 2e-04
1hjz_A192 Crystal Structure Of Af1521 Protein Containing A Ma 2e-04
4gvw_A199 Three-Dimensional Structure Of The De Novo Designed 3e-04
1yd9_A193 1.6a Crystal Structure Of The Non-Histone Domain Of 4e-04
1zr3_A211 Crystal Structure Of The Macro-Domain Of Human Core 7e-04
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, Northeast Structural Genomoics Target Er58 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 13  KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQ 72
           KT + + +GDI++  VD     IV+  N  L  GG    AIH AAGP L  AC ++ + Q
Sbjct: 2   KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 73  PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED--------------------- 111
               CP G A IT    LP   V+HTVGPV+      ED                     
Sbjct: 58  G--DCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 112 -----ILRSAYKYPPDEAATIAISTVKEFANDF---KEVHFILFTDDIYNVW 155
                I    Y YP   AA IA+ TV EF       ++V+F+ + ++  +++
Sbjct: 116 VAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLY 167
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1 Length = 235 Back     alignment and structure
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With Adenosine-5- Diphosphoribose Length = 214 Back     alignment and structure
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein, Ttha0132 From Thermus Thermophilus Hb8 Length = 159 Back     alignment and structure
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium Target Or130 Length = 167 Back     alignment and structure
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED SERINE Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or187 Length = 167 Back     alignment and structure
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO DESIGNED Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or186 Length = 167 Back     alignment and structure
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed Serine Hydrolase Osh55, Northeast Structural Genomics Consortium (Nesg) Target Or185 Length = 167 Back     alignment and structure
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase Osh55.27, Northeast Structural Genomics Consortium (Nesg) Target Or246 Length = 167 Back     alignment and structure
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module Length = 192 Back     alignment and structure
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a Domain Length = 192 Back     alignment and structure
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine Hydrolase 2bfq_3, Northeast Structural Genomics Consortium (Nesg) Target Or248 Length = 199 Back     alignment and structure
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The Histone Variant Macroh2a1.1. Length = 193 Back     alignment and structure
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core Histone Variant Macroh2a1.1 (Form B) Length = 211 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 2e-50
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 3e-50
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 3e-50
1spv_A184 Putative polyprotein/phosphatase; structural genom 3e-50
1vhu_A211 Hypothetical protein AF1521; structural genomics, 8e-48
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 1e-46
2x47_A235 Macro domain-containing protein 1; signaling prote 1e-45
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 2e-45
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 2e-43
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 3e-42
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 7e-42
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 1e-41
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 1e-41
2vri_A174 Non-structural protein 3; RNA replication, nucleot 1e-38
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 1e-38
3gqe_A168 Non-structural protein 3; macro domain, X domain, 2e-36
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 2e-19
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Length = 193 Back     alignment and structure
 Score =  159 bits (405), Expect = 2e-50
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 34/177 (19%)

Query: 16  LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
           L +++ DIS     R  + IV PT   + L      A+ +A G +  +   ++ ++Q   
Sbjct: 21  LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP- 78

Query: 76  RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYK----------------- 118
                EA ++    L    VIH   P +      E+ L    K                 
Sbjct: 79  -LEVAEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136

Query: 119 --------YPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNVWLKKAKEL 162
                   +P   AA + +  +        A+  K V+F+LF  +   +++++  +L
Sbjct: 137 PFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKL 193
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Length = 214 Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Length = 193 Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Length = 184 Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Length = 211 Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Length = 159 Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Length = 235 Back     alignment and structure
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Length = 221 Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Length = 168 Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Length = 182 Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Length = 193 Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Length = 176 Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Length = 174 Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Length = 168 Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Length = 168 Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Length = 284 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
3q6z_A214 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
3q71_A221 Poly [ADP-ribose] polymerase 14; structural genomi 100.0
1spv_A184 Putative polyprotein/phosphatase; structural genom 100.0
2xd7_A193 Core histone macro-H2A.2; chromosomal protein, nuc 100.0
1yd9_A193 Core histone macro-H2A.1; alpha-beta structure, A1 100.0
4abl_A183 Poly [ADP-ribose] polymerase 14; transferase, PARP 100.0
2x47_A235 Macro domain-containing protein 1; signaling prote 100.0
3eti_A168 X (ADRP) domain, macro domain of non-structural pr 100.0
3kh6_A199 Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3 100.0
1vhu_A211 Hypothetical protein AF1521; structural genomics, 100.0
2dx6_A159 Hypothetical protein TTHA0132; conserved hypotheti 100.0
2acf_A182 Replicase polyprotein 1AB; ADRP domain, SARS NSP-3 100.0
3ejg_A193 Non-structural protein 3; HCOV 229E, X-domain, mac 100.0
3ejf_A176 Non-structural protein 3; IBV, coronavirus, X-doma 100.0
2vri_A174 Non-structural protein 3; RNA replication, nucleot 100.0
3gpg_A168 NSP3, non-structural protein 3; macro domain, X do 100.0
3gqe_A168 Non-structural protein 3; macro domain, X domain, 100.0
1njr_A284 32.1 kDa protein in ADH3-RCA1 intergenic region; s 99.96
4gua_A 670 Non-structural polyprotein; viral precursor polypr 99.94
2jyc_A160 Uncharacterized protein C6ORF130; macro domain, A1 99.86
2eee_A149 Uncharacterized protein C6ORF130; macro domain, A1 99.85
2fg1_A158 Conserved hypothetical protein BT1257; structural 99.82
3sig_A277 PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1 96.7
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.7e-42  Score=269.29  Aligned_cols=152  Identities=32%  Similarity=0.438  Sum_probs=139.5

Q ss_pred             eeecCCCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139            7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP   86 (165)
Q Consensus         7 ~~~~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~   86 (165)
                      .+.+++|.+|.+++||||++++    |||||++|+.|.++|||++||+++||++|++||+++.+.+  +++++|++++|+
T Consensus        30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~  103 (214)
T 3q6z_A           30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKRE--GRLLPGNATISK  103 (214)
T ss_dssp             EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHHH--CCCCTTCEEEEE
T ss_pred             EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHHc--CCCCCCeEEEEc
Confidence            5677899999999999999987    9999999999999999999999999999999999986433  589999999999


Q ss_pred             CCCCCCceEEEecCCCcCCCCC--HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc--
Q 031139           87 GFKLPVSHVIHTVGPVFNFHCN--PEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN--  137 (165)
Q Consensus        87 ~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~--  137 (165)
                      +|+||||||||+|||.|+.+..  +.++|++||                         |||++++|++|++++++|++  
T Consensus       104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~  183 (214)
T 3q6z_A          104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK  183 (214)
T ss_dssp             CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred             CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999988652  457898888                         99999999999999999994  


Q ss_pred             ----CCCEEEEEecChHHHHHHHHHHHHHhc
Q 031139          138 ----DFKEVHFILFTDDIYNVWLKKAKELLQ  164 (165)
Q Consensus       138 ----~~~~I~~V~~~~~~~~~f~~~~~~~~~  164 (165)
                          ++++|+||+|+++++++|.++++++|.
T Consensus       184 ~~~~~l~~V~fv~~d~~~~~~f~~~l~~~f~  214 (214)
T 3q6z_A          184 KDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK  214 (214)
T ss_dssp             C--CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence                478999999999999999999999984
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens} Back     alignment and structure
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2 Back     alignment and structure
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens} Back     alignment and structure
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A Back     alignment and structure
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A Back     alignment and structure
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens} Back     alignment and structure
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A* Back     alignment and structure
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A* Back     alignment and structure
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A Back     alignment and structure
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A* Back     alignment and structure
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A* Back     alignment and structure
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A* Back     alignment and structure
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63} Back     alignment and structure
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A Back     alignment and structure
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A* Back     alignment and structure
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A* Back     alignment and structure
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus} Back     alignment and structure
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A* Back     alignment and structure
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A Back     alignment and structure
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1yd9a1188 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Ratt 1e-31
d1vhua_192 c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeo 2e-29
d2acfa1168 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SA 3e-27
d1spva_172 c.50.1.2 (A:) Hypothetical protein YmbD {Escherich 6e-27
d1njra_264 c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker' 1e-19
d2fg1a1154 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Ba 1e-10
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (275), Expect = 1e-31
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 42/188 (22%)

Query: 10  FSTKT-----SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
            STK+      L++ + DI+    D    A+V PTN    +GG   + + +  G +  +A
Sbjct: 5   LSTKSLFLGQKLQVVQADIASIDSD----AVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 60

Query: 65  CYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYK------ 118
             ++ +           A ++ G  LP   VIH   PV+       ++L    K      
Sbjct: 61  VLELRKKNG--PLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCE-ELLEKTVKNCLALA 117

Query: 119 -------------------YPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNV 154
                              +P   AA + +  +  +     ++  K V+F+LF  +   +
Sbjct: 118 DDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 177

Query: 155 WLKKAKEL 162
           ++++  +L
Sbjct: 178 YVQEMAKL 185
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Length = 168 Back     information, alignment and structure
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Length = 172 Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 264 Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1yd9a1188 Histone macro-H2a1.1 {Rat (Rattus norvegicus) [Tax 100.0
d1spva_172 Hypothetical protein YmbD {Escherichia coli [TaxId 100.0
d1vhua_192 Hypothetical protein AF1521 {Archaeon Archaeoglobu 100.0
d2acfa1168 Replicase polyprotein 1ab {SARS coronavirus [TaxId 100.0
d1njra_264 Hypothetical protein Ymr087W {Baker's yeast (Sacch 99.91
d2fg1a1154 Hypothetical protein BT1257 {Bacteroides thetaiota 99.67
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Macro domain
domain: Histone macro-H2a1.1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-39  Score=246.98  Aligned_cols=152  Identities=23%  Similarity=0.420  Sum_probs=138.8

Q ss_pred             eeecCCCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139            7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP   86 (165)
Q Consensus         7 ~~~~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~   86 (165)
                      +-++..|.+|+|++||||++++    ||||||+|+++.+++|++++|++++|++|++||+++.+++  ++++.|++++|+
T Consensus         7 ~~~~~~~~~i~i~~GDIt~~~~----DaIVn~an~~l~~~~gv~~ai~~~~G~~l~~e~~~~~~~~--~~~~~g~~~vT~   80 (188)
T d1yd9a1           7 TKSLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKN--GPLEVAGAAVSA   80 (188)
T ss_dssp             EEECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCTTCEEEEE
T ss_pred             ccccccCCEEEEEeCCcCcCCC----CEEEECCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHhc--cccCCCCeeecc
Confidence            3456789999999999999987    9999999999999999999999999999999999877544  589999999999


Q ss_pred             CCCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc----
Q 031139           87 GFKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN----  137 (165)
Q Consensus        87 ~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~----  137 (165)
                      +|+|||+||||+|+|.|+.+ ..+++|++||                         |||++++|++|++++.+|+.    
T Consensus        81 ~~~L~~k~IiH~v~P~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~  159 (188)
T d1yd9a1          81 GHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMS  159 (188)
T ss_dssp             CTTSSSSEEEEECCCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cCCCCceEEeeeccccCCCc-chHHHHHHHHHHHHHHHHHcCCCeEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999875 4567788777                         89999999999999999984    


Q ss_pred             -CCCEEEEEecChHHHHHHHHHHHHHhcC
Q 031139          138 -DFKEVHFILFTDDIYNVWLKKAKELLQG  165 (165)
Q Consensus       138 -~~~~I~~V~~~~~~~~~f~~~~~~~~~~  165 (165)
                       ++++|+||+++++++++|.+.|.+++.|
T Consensus       160 ~~l~~V~~v~~~~~~~~~f~~~l~ki~~n  188 (188)
T d1yd9a1         160 SSIKTVYFVLFDSESIGIYVQEMAKLDAN  188 (188)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTTCC
T ss_pred             CCccEEEEEeCCHHHHHHHHHHHHHHhcC
Confidence             5889999999999999999999998876
>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2acfa1 c.50.1.2 (A:184-351) Replicase polyprotein 1ab {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure