Citrus Sinensis ID: 031143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENM
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEHEEcccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssrrnaiprrahkeraqpqsrkkfgllekhKDYVVRAKAYRKKEETIRRLKEKaafrnpdeFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLdsnlssrhvyyaedrfmlsklpffsegnNILDLLAILYMENM
Flexible Loop (DISEMBL)
mssrrnaiprrahkeraqpqsrkkfgllekhkdyvvrakayrkkeetirrlkekaafrnpdefylKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMlhsldsnlSSRHVYYAEDRFMLSklpffsegnNILDLLAILYMENM
Low Complexity Region (SEG)
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENM
Disordered region (IsUnstruct)
**************************LLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYM***
Disordered Region (DISOPRED)
************************FGLLEKHKDYVVRAKAYRKKEET**********RNPDEFYLKMIKT***********************MKTQDIGYILQ***************************VYYAEDRFMLSKLPFFSEGNNILDLLAILYME**
Disordered Region (DISEMBL)
********************SRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENM
Disordered Region (DISPRO)
****************AQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKxxxxxxxxxxxxxxxxxxxxxLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILYMENM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q8S1Z1	229	Probable U3 small nucleol	yes	no	0.836	0.602	0.731	3e-56
Q9M223	228	Probable U3 small nucleol	yes	no	0.836	0.605	0.659	5e-50
Q55C50	250	Probable U3 small nucleol	yes	no	0.787	0.52	0.477	1e-26
Q9Y3A2	253	Probable U3 small nucleol	yes	no	0.751	0.490	0.484	3e-25
Q8R5K5	253	Probable U3 small nucleol	no	no	0.751	0.490	0.484	6e-25
Q9CZJ1	253	Probable U3 small nucleol	yes	no	0.751	0.490	0.484	6e-25
Q10106	249	Probable U3 small nucleol	yes	no	0.824	0.546	0.414	6e-23
Q9W3C0	237	Probable U3 small nucleol	yes	no	0.848	0.590	0.395	7e-21
Q09462	262	Probable U3 small nucleol	yes	no	0.727	0.458	0.392	5e-16
P34247	250	U3 small nucleolar RNA-as	yes	no	0.678	0.448	0.386	5e-14

>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2

 Score =  217 bits (552), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 124/138 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           H LD+   ++HVY+AEDR
Sbjct: 121 HELDNKRPNKHVYFAEDR 138

Involved in nucleolar processing of pre-18S ribosomal RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1

 Score =  196 bits (499), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 112/138 (81%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct: 1   MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEF  KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+NKI+KLT  L
Sbjct: 61  DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
                  S RHVYYAEDR
Sbjct: 121 QCTGDQSSRRHVYYAEDR 138

Involved in nucleolar processing of pre-18S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 6/136 (4%)

Query: 5   RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFY 64
           R  +P+RA +ER QP+S KK G LE+ KDYV RAK Y  K +T+++LK +AAF+NPDEF 
Sbjct: 7   RRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFKNPDEFN 66

Query: 65  LKMIKTKIVDGVHRLESEANKYT--QEELILMKTQDIGYILQKLQSERNKIEKLTTMLHS 122
            KMI +K+VDGVH   SE +K +  +E++I +KTQDI Y+  K +++  KIE+L   L  
Sbjct: 67  YKMISSKLVDGVH---SEISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQATLQY 123

Query: 123 LDSNL-SSRHVYYAED 137
           +DS L  +  + Y +D
Sbjct: 124 MDSGLEPTEQIIYVDD 139

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
           R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM + 
Sbjct: 14  REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73

Query: 71  KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
           K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYY 134
           ++HV++
Sbjct: 134 NKHVFF 139

Involved in nucleolar processing of pre-18S ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
           R ++ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM + 
Sbjct: 14  REYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73

Query: 71  KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
           K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYY 134
           +RHV++
Sbjct: 134 NRHVFF 139

Involved in nucleolar processing of pre-18S ribosomal RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 2/126 (1%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
           R H+ER+QP  RK+ GLLEK KDY +RA  Y KK++ +R L++KA  +NPDEFY KM + 
Sbjct: 14  REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73

Query: 71  KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
           K+ DGVH  +    + T E+L LM+TQDI YI  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYY 134
            +HV++
Sbjct: 134 KKHVFF 139

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6.06 PE=3 SV=1

 Score =  106 bits (265), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 4/140 (2%)

Query: 2   SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
           SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y+ K++ ++RL+EKA  RNPD
Sbjct: 3   SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62

Query: 62  EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLH 121
           EFY +M   K  +GV   + E +    + + ++KTQDIG+I      ER KI+ L   +H
Sbjct: 63  EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH 122

Query: 122 SL----DSNLSSRHVYYAED 137
           ++    + N S +H  + ++
Sbjct: 123 TVGAHRNKNESRKHTIFVDN 142

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 4/144 (2%)

Query: 1   MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
           MSS +NA    ++ H+ER QP+SR+  G LEK KDY  RA   +KK++T++ L  +A  +
Sbjct: 1   MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60

Query: 59  NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTT 118
           NPDEFY  MI +K+ +  H  +   +++T E+L LM+TQD+ Y++ K   ER KIE+L  
Sbjct: 61  NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKA 120

Query: 119 MLHSLDS--NLSSRHVYYAEDRFM 140
            L  +D+    +++ + + ED +M
Sbjct: 121 SLVDVDAIKGAANKRIKFDEDGYM 144

Involved in nucleolar processing of pre-18S ribosomal RNA.

Drosophila melanogaster (taxid: 7227)

>sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11 OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 83/125 (66%), Gaps = 5/125 (4%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
           +R H+ER+QP++R+K+G LEK KDY +RA+ Y+KK +TI++LK+ A  +N DE++  M+ 
Sbjct: 14  QRQHRERSQPEARRKYGELEKKKDYKLRAEDYQKKRDTIKKLKKSAMDKNQDEYHHHMVN 73

Query: 70  TKI-VDGVH---RLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDS 125
           ++   DG H   + E+E  + TQ +  L   +D+ Y+  KL  E+ KI+++   LH  DS
Sbjct: 74  SETWADGRHFDKKTEAEETE-TQIQKKLGSLKDLEYVKFKLNEEKKKIDEMKGELHFADS 132

Query: 126 NLSSR 130
           +L+ +
Sbjct: 133 SLNGK 137

Involved in nucleolar processing of pre-18S ribosomal RNA.

Caenorhabditis elegans (taxid: 6239)

>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 8   IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
           + ++ H+ER+Q  SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA  RNPDE+Y  M
Sbjct: 8   VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67

Query: 68  ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
                  K  ++   H  E E    + +++ L+KTQD  Y+    Q E  K+EK    L
Sbjct: 68  HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQL 125

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255553233	231	U3 small nucleolar RNA-associated protei	0.951	0.679	0.732	3e-60
224137520	229	predicted protein [Populus trichocarpa]	0.836	0.602	0.811	1e-59
225439057	229	PREDICTED: probable U3 small nucleolar R	0.836	0.602	0.775	2e-56
147857564	229	hypothetical protein VITISV_023155 [Viti	0.836	0.602	0.775	2e-56
356524892	229	PREDICTED: probable U3 small nucleolar R	0.836	0.602	0.753	4e-56
449470253	228	PREDICTED: probable U3 small nucleolar R	0.878	0.635	0.688	3e-55
115440601	229	Os01g0810000 [Oryza sativa Japonica Grou	0.836	0.602	0.731	1e-54
356512107	229	PREDICTED: probable U3 small nucleolar R	0.903	0.650	0.683	3e-54
388510862	229	unknown [Lotus japonicus]	0.909	0.655	0.660	7e-53
413952155	215	hypothetical protein ZEAMMB73_323251 [Ze	0.836	0.641	0.702	1e-51

>gi|255553233|ref|XP_002517659.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223543291|gb|EEF44823.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/157 (73%), Positives = 132/157 (84%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR+AHKER+QPQSRKK+GLLEKHKDY+VRAKA+ KKEE ++RLKEKAAFRNP
Sbjct: 1   MSSLRNAIPRKAHKERSQPQSRKKYGLLEKHKDYIVRAKAFHKKEEALQRLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMIKT+ VDGVHR ES+ANKYT+EEL+LMKTQDIGYILQKLQSE+ KIEKLT  L
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYTEEELLLMKTQDIGYILQKLQSEKKKIEKLTATL 120

Query: 121 HSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLL 157
           HSL +  S+RH+YY EDR    +L   S  N I+  L
Sbjct: 121 HSLKNQPSNRHIYYVEDREEAKELRSQSSANEIVPAL 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137520|ref|XP_002322578.1| predicted protein [Populus trichocarpa] gi|222867208|gb|EEF04339.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 123/138 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPR+AHKERAQPQ+RKKFGLLEKHKDYV RAKA+ KKEET+RRLKEKAA RNP
Sbjct: 1   MSSLRNAIPRKAHKERAQPQARKKFGLLEKHKDYVARAKAFHKKEETLRRLKEKAASRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY  MIK+K VDGVHR +SEANKYTQEEL+LMKTQDIGYILQK QSE+ KIEKLT  L
Sbjct: 61  DEFYFGMIKSKTVDGVHRPQSEANKYTQEELLLMKTQDIGYILQKAQSEKKKIEKLTATL 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           HSLD   SS+H+Y+AEDR
Sbjct: 121 HSLDGRPSSKHIYFAEDR 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439057|ref|XP_002265743.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11 [Vitis vinifera] gi|239056174|emb|CAQ58608.1| unknown gene [Vitis vinifera] gi|239056194|emb|CAQ58632.1| unknown protein / putative CGI-94 protein [Vitis vinifera] gi|296085811|emb|CBI31135.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 124/138 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRA+KERAQP  RKKFGLLEKHKDYVVRA+A+ KKEE +++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMIKT+ VDGVHR ES+ANKY+ EEL+LMKTQD+GY+LQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           HSLD+  ++RHVYYAEDR
Sbjct: 121 HSLDNQPTNRHVYYAEDR 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857564|emb|CAN82884.1| hypothetical protein VITISV_023155 [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 124/138 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRA+KERAQP  RKKFGLLEKHKDYVVRA+A+ KKEE +++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMIKT+ VDGVHR ES+ANKY+ EEL+LMKTQD+GY+LQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           HSLD+  ++RHVYYAEDR
Sbjct: 121 HSLDNQPTNRHVYYAEDR 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524892|ref|XP_003531062.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 125/138 (90%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKER+QP SRKKFGLLEKHKDY+ RAKA+ KKE+T+R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLREKAANRNE 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KM++TK VDGVH+ ESEANKYTQEEL+LMKTQD+GYILQK+QSERNKIE+LT  L
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQEELMLMKTQDMGYILQKIQSERNKIERLTASL 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           HS+D+  +++HV++AEDR
Sbjct: 121 HSIDNQPANKHVFFAEDR 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470253|ref|XP_004152832.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus] gi|449477691|ref|XP_004155095.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Cucumis sativus]

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 126/154 (81%), Gaps = 9/154 (5%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNA+PRR +KERAQPQSRKKFGLLEKHKDY+ RAKA+ KKE+T+R+LKEKAAF+NP
Sbjct: 1   MSSLRNAVPRRPYKERAQPQSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLKEKAAFKNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMI+T+ VDGVH+ ES  NKYT E+L+LMKTQD GYILQK+QSE+ KIEKLT  L
Sbjct: 61  DEFYFKMIRTRTVDGVHKPESHVNKYTAEQLMLMKTQDAGYILQKMQSEKKKIEKLTATL 120

Query: 121 HSLDSNLSSRHVYYAEDRFMLSKLPFFSEGNNIL 154
           HSLD+  S++H+Y+AEDR          E N IL
Sbjct: 121 HSLDNQPSNKHLYFAEDR---------EEANEIL 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440601|ref|NP_001044580.1| Os01g0810000 [Oryza sativa Japonica Group] gi|73621302|sp|Q8S1Z1.2|UTP11_ORYSJ RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 gi|55297663|dbj|BAD68234.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|55297664|dbj|BAD68235.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|113534111|dbj|BAF06494.1| Os01g0810000 [Oryza sativa Japonica Group] gi|215717047|dbj|BAG95410.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767926|dbj|BAH00155.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189251|gb|EEC71678.1| hypothetical protein OsI_04152 [Oryza sativa Indica Group] gi|222619423|gb|EEE55555.1| hypothetical protein OsJ_03819 [Oryza sativa Japonica Group]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 124/138 (89%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           H LD+   ++HVY+AEDR
Sbjct: 121 HELDNKRPNKHVYFAEDR 138

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512107|ref|XP_003524762.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 128/158 (81%), Gaps = 9/158 (5%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKER+QP SRKKFGLLEKHKDYV RAKA+ KKE T+R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYVQRAKAFHKKEGTLRKLREKAANRNE 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KM++TK VDGVH+ ESEANKYTQ+EL+LMKTQD+GYILQK+QSERNKIE+LT  L
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQQELMLMKTQDMGYILQKIQSERNKIERLTASL 120

Query: 121 HSLDSNLSSRHVYYA---------EDRFMLSKLPFFSE 149
           HS+D    ++HV +A         E ++  SK+PF SE
Sbjct: 121 HSIDKQPVNKHVLFAEEREEAKELESQYQKSKIPFTSE 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510862|gb|AFK43497.1| unknown [Lotus japonicus]

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 126/159 (79%), Gaps = 9/159 (5%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNA+PRRAHKERAQP SRKKFG LEKHKDYV RAKA+ KKEET+R L+EKAA RN 
Sbjct: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMI+T+  DGVHR ESEANKYTQ+EL+LMKTQD+GY+LQKLQSER KIEKL   L
Sbjct: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120

Query: 121 HSLDSNLSSRHVYYAEDR---------FMLSKLPFFSEG 150
           HS+D+  +++H+ +AEDR         +  S++P  S+ 
Sbjct: 121 HSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDN 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952155|gb|AFW84804.1| hypothetical protein ZEAMMB73_323251 [Zea mays]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 118/138 (85%)

Query: 1   MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
           MSS RNAIPRRAHKERAQP++RKKFGLLEKHKDYVVRA+AY  KE TI +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERAQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
           DEFY KMI ++ V G+HR + E NKYT+EEL+L+K +D+GYILQ +QSE+ KIEKL++ L
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSVQSEKKKIEKLSSTL 120

Query: 121 HSLDSNLSSRHVYYAEDR 138
           H LD+   ++HVY+AEDR
Sbjct: 121 HELDNKPQNKHVYFAEDR 138

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2103356	228	EDA14 "EMBRYO SAC DEVELOPMENT	0.836	0.605	0.659	6.9e-47
UNIPROTKB|E1BU24	253	UTP11L "Uncharacterized protei	0.921	0.600	0.415	4.4e-29
UNIPROTKB|F1N165	253	UTP11L "Uncharacterized protei	0.781	0.509	0.480	8.2e-28
DICTYBASE|DDB_G0270230	250	utp11 "U3 snoRNP protein" [Dic	0.824	0.544	0.471	1.3e-27
UNIPROTKB|B4DJC6	148	UTP11L "Probable U3 small nucl	0.781	0.871	0.465	1.7e-27
UNIPROTKB|Q9Y3A2	253	UTP11L "Probable U3 small nucl	0.781	0.509	0.465	1.7e-27
UNIPROTKB|F1SV29	253	UTP11L "Uncharacterized protei	0.781	0.509	0.465	2.2e-27
MGI|MGI:1914455	253	Utp11l "UTP11-like, U3 small n	0.781	0.509	0.465	2.8e-27
RGD|621412	253	Utp11l "UTP11-like, U3 small n	0.781	0.509	0.465	3.5e-27
UNIPROTKB|Q8R5K5	253	Utp11l "Probable U3 small nucl	0.781	0.509	0.465	3.5e-27

TAIR|locus:2103356 EDA14 "EMBRYO SAC DEVELOPMENT ARREST 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 91/138 (65%), Positives = 112/138 (81%)

Query:     1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
             MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct:     1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query:    61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
             DEF  KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+NKI+KLT  L
Sbjct:    61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query:   121 HSLDSNLSSRHVYYAEDR 138
                    S RHVYYAEDR
Sbjct:   121 QCTGDQSSRRHVYYAEDR 138

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0009561 "megagametogenesis" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

UNIPROTKB|E1BU24 UTP11L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/154 (41%), Positives = 100/154 (64%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ERAQP  RKK GLLEK KDY +RA+ Y KK+  +R L++KA  +NPDEFY KMI+
Sbjct:    13 QRQHRERAQPACRKKLGLLEKKKDYRLRAQDYHKKQNALRALQKKALDKNPDEFYFKMIR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
             T++ DGVH ++   ++ T E++ LMKTQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 TQLKDGVHVIKQPEDEVTPEQMKLMKTQDLKYVEMKRVAEAKKIERLKSELHLLDVEGKQ 132

Query:   128 SSRHVYYAEDRFMLSKLPFFSEGNNILDLLAILY 161
              ++H ++ + +  + +    +  N + +L+  +Y
Sbjct:   133 PNKHTFFFDTKKEVQEFDIATHLNTVPELVDRVY 166

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

UNIPROTKB|F1N165 UTP11L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 63/131 (48%), Positives = 87/131 (66%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQDI YI  K  +E  KIE+L   LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDIKYIEMKRVAEAKKIERLKAELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              ++HV++ + +
Sbjct:   133 QNKHVFFFDTK 143

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

DICTYBASE|DDB_G0270230 utp11 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 66/140 (47%), Positives = 92/140 (65%)

Query:     1 MSSR--RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
             MSS   R  +P+RA +ER QP+S KK G LE+ KDYV RAK Y  K +T+++LK +AAF+
Sbjct:     1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query:    59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTT 118
             NPDEF  KMI +K+VDGVH  E       +E++I +KTQDI Y+  K +++  KIE+L  
Sbjct:    61 NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQA 119

Query:   119 MLHSLDSNLS-SRHVYYAED 137
              L  +DS L  +  + Y +D
Sbjct:   120 TLQYMDSGLEPTEQIIYVDD 139

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|B4DJC6 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 61/131 (46%), Positives = 88/131 (67%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              ++HV++ + +
Sbjct:   133 QNKHVFFFDTK 143

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

UNIPROTKB|Q9Y3A2 UTP11L "Probable U3 small nucleolar RNA-associated protein 11" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 61/131 (46%), Positives = 88/131 (67%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              ++HV++ + +
Sbjct:   133 QNKHVFFFDTK 143

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

UNIPROTKB|F1SV29 UTP11L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/131 (46%), Positives = 87/131 (66%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  YR K+E +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              ++HV++ + +
Sbjct:   133 QNKHVFFFDTK 143

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

MGI|MGI:1914455 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 61/131 (46%), Positives = 86/131 (65%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R H+ER+QP  RK+ GLLEK KDY +RA  Y KK++ +R L++KA  +NPDEFY KM +
Sbjct:    13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH  +    + T E+L LM+TQDI YI  K  +E  KIE+L + LH LD     
Sbjct:    73 AKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
               +HV++ + +
Sbjct:   133 QKKHVFFFDTK 143

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=ISO

RGD|621412 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 61/131 (46%), Positives = 88/131 (67%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              +RHV++ + +
Sbjct:   133 QNRHVFFFDTK 143

GO:0005615 "extracellular space" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

UNIPROTKB|Q8R5K5 Utp11l "Probable U3 small nucleolar RNA-associated protein 11" [Rattus norvegicus (taxid:10116)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 61/131 (46%), Positives = 88/131 (67%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  YRKK+E ++ L++KA  +NPDEFY KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNL 127
              K+ DGVH ++    + T E+L LM+TQD+ YI  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYYAEDR 138
              +RHV++ + +
Sbjct:   133 QNRHVFFFDTK 143

GO:0032040 "small-subunit processome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M223	UTP11_ARATH	No assigned EC number	0.6594	0.8363	0.6052	yes	no
Q8S1Z1	UTP11_ORYSJ	No assigned EC number	0.7318	0.8363	0.6026	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0101007501	hypothetical protein (229 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•			•		0.819
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•		•		0.763
	gw1.X.2964.1	hypothetical protein (516 aa)				•			•		0.735
	eugene3.00640202	hypothetical protein (1181 aa)				•			•		0.717
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•			•		0.702
	eugene3.00160311	hypothetical protein (691 aa)				•			•		0.697
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)				•			•		0.680
	eugene3.00090493	hypothetical protein (840 aa)				•			•		0.680
	grail3.0106016302	hypothetical protein (217 aa)				•			•		0.664
	gw1.I.4832.1	hypothetical protein (422 aa)				•					0.656

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam03998	239	pfam03998, Utp11, Utp11 protein	3e-48
COG5223	240	COG5223, COG5223, Uncharacterized conserved protei	2e-21

>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein

 Score =  155 bits (395), Expect = 3e-48
 Identities = 69/131 (52%), Positives = 92/131 (70%), Gaps = 2/131 (1%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
           RR H+ER+QP+SRK  GLLEK KDY +RAK Y KKE+T++ LKEKAA RNPDEFY  MI 
Sbjct: 1   RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60

Query: 70  TKIVDGVHRLESEANK-YTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLS 128
           +K  DGVH L+ E  +  ++E++ L+KTQD+ Y+  K Q+E  KIEKL   LH  DS  +
Sbjct: 61  SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSA 120

Query: 129 S-RHVYYAEDR 138
             +H+ + +D 
Sbjct: 121 GPKHIVFVDDE 131

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 239

>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function unknown]

 Score = 86.6 bits (214), Expect = 2e-21
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 3/138 (2%)

Query: 2   SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
                   R+ H+ER QP+ R+K+G LEK KDYV RA+   KK++ +++L+EKA  RNPD
Sbjct: 3   LGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPD 62

Query: 62  EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLH 121
           E+Y  M   K   GV  +  E      +   ++KTQD      + + ER K     T + 
Sbjct: 63  EYYHGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIK 122

Query: 122 SLDSNLSSRHVYYAEDRF 139
             +   SS H  + + RF
Sbjct: 123 FEE---SSLHTIFVDMRF 137

Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG3237	250	consensus Uncharacterized conserved protein [Funct	100.0
PF03998	243	Utp11: Utp11 protein; InterPro: IPR007144 A large	100.0
COG5223	240	Uncharacterized conserved protein [Function unknow	100.0

>KOG3237 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-65  Score=431.69  Aligned_cols=164  Identities=45%  Similarity=0.631  Sum_probs=158.5

Q ss_pred             CCccccccc--cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHHhhCCCchhhhhhhhhhcCCccc
Q 031143            1 MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHR   78 (165)
Q Consensus         1 Msslrna~k--rr~HrER~QP~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~Gvh~   78 (165)
                      ||||+||++  +++|||||||.+|++||+|||||||++||.|||+|+++|+.||++|+++|||||||+|+|+++.+|+|+
T Consensus         1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi   80 (250)
T KOG3237|consen    1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI   80 (250)
T ss_pred             CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence            899999999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCCeeEEeeCccccc-cCC---CCCChhh
Q 031143           79 LESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLSSRHVYYAEDRFMLS-KLP---FFSEGNN  152 (165)
Q Consensus        79 ~~~~~~~~t~e~~kl~ktQDl~Yv~~~~~~e~kKiekL~~~L~~~~--~~~~nkH~vFvd~~~e~~-~~~---fdT~~el  152 (165)
                      +..+.+++|.|||+||+|||++||.+++++|++|||+|.++||+++  .+.+|+||+||||.+|++ |+|   |+|++||
T Consensus        81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~el  160 (250)
T KOG3237|consen   81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLEL  160 (250)
T ss_pred             cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHHH
Confidence            9988889999999999999999999999999999999999999999  577899999999999998 555   9999999


Q ss_pred             HhhHhhhhhhhc
Q 031143          153 ILDLLAILYMEN  164 (165)
Q Consensus       153 l~R~~n~~~~~~  164 (165)
                      ++|+|||+.-|.
T Consensus       161 v~R~~nr~~kee  172 (250)
T KOG3237|consen  161 VGRSENRLKKEE  172 (250)
T ss_pred             hhhhhhhhhHHH
Confidence            999999997653

>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=6.4e-65  Score=428.36  Aligned_cols=154  Identities=45%  Similarity=0.671  Sum_probs=146.1

Q ss_pred             cccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHHhhCCCchhhhhhhhhhcC-Cccccccc-cCCCC
Q 031143           10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVD-GVHRLESE-ANKYT   87 (165)
Q Consensus        10 rr~HrER~QP~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~-Gvh~~~~~-~~~~t   87 (165)
                      ||+|||||||++|++||||||||||++||+|||+|+++|+.|++||++||||||||+|||+++.+ |+|+...+ ++.+|
T Consensus         1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~   80 (243)
T PF03998_consen    1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS   80 (243)
T ss_pred             CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999 99998887 78899


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCCC--CCeeEEeeCccccccCC----CCCChhhHhhHhhhhh
Q 031143           88 QEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLS--SRHVYYAEDRFMLSKLP----FFSEGNNILDLLAILY  161 (165)
Q Consensus        88 ~e~~kl~ktQDl~Yv~~~~~~e~kKiekL~~~L~~~~~~~~--nkH~vFvd~~~e~~~~~----fdT~~ell~R~~n~~~  161 (165)
                      .++++||+|||++||+++++++.+||++|+++||+++....  |+|||||||++|++.|+    |||+|+++++.+|+|.
T Consensus        81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~~  160 (243)
T PF03998_consen   81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRPK  160 (243)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhcccccccc
Confidence            99999999999999999999999999999999999985443  69999999999999555    9999999999999977


Q ss_pred             hh
Q 031143          162 ME  163 (165)
Q Consensus       162 ~~  163 (165)
                      ++
T Consensus       161 ~~  162 (243)
T PF03998_consen  161 KD  162 (243)
T ss_pred             HH
Confidence            65

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG5223 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.1e-47  Score=317.29  Aligned_cols=159  Identities=33%  Similarity=0.424  Sum_probs=150.0

Q ss_pred             CCc-cccccccccccccCCcchhhccccccccccHHHHHHHHhHHHHHHHHHHHHHHhhCCCchhhhhhhhhhcCCcccc
Q 031143            1 MSS-RRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL   79 (165)
Q Consensus         1 Mss-lrna~krr~HrER~QP~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~Gvh~~   79 (165)
                      ||+ |.++-+|++||||+||.+|++||+|||||||++||.|||+|+.+|+.||++|..||||||||+|.+.++.+|+..+
T Consensus         1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~   80 (240)
T COG5223           1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI   80 (240)
T ss_pred             CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence            775 5555588999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCeeEEeeCccccc-cCC---CCCChhhHhh
Q 031143           80 ESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDSNLSSRHVYYAEDRFMLS-KLP---FFSEGNNILD  155 (165)
Q Consensus        80 ~~~~~~~t~e~~kl~ktQDl~Yv~~~~~~e~kKiekL~~~L~~~~~~~~nkH~vFvd~~~e~~-~~~---fdT~~ell~R  155 (165)
                      .++++.++.|++++++|||.+|+++.++.|+.+++.+..++++   ..++.|++|||+..+++ |.|   |.|+.|||+|
T Consensus        81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f---~es~~htifvD~r~~~kef~peeFf~tt~elV~r  157 (240)
T COG5223          81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKF---EESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVR  157 (240)
T ss_pred             eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeee---eccccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999999   46789999999999998 666   9999999999


Q ss_pred             Hhhhhhh
Q 031143          156 LLAILYM  162 (165)
Q Consensus       156 ~~n~~~~  162 (165)
                      +.||++=
T Consensus       158 ~enrl~k  164 (240)
T COG5223         158 RENRLEK  164 (240)
T ss_pred             HHHHHHH
Confidence            9999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00