Citrus Sinensis ID: 031152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
Secondary Structure (PSIPRED)
cccEEEEEHHHccccccccEEccccccccccccccccccccccccEEEcccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEEcHHHHHHHHcccccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccEEEEEEccccccccccEccccccccccccEEEEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccEcccEEEEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MAKLYQKLLKISGLYAQYIWYFpiigekgtgasgkplhfkgkpfhrIVSGFViqggdivrgdgkgsdsiyggtfpdenfkikhsHAGVVSMvnsgpdsngsqFFITTVKaswldgehvVFGKVIQGMDTVYAIeggagtysgkprkkvtiadsgeipknkwdeer
Flexible Loop (DISEMBL)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGgagtysgkprkkvtiadsgeipknkwdeer
Low Complexity Region (SEG)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
Disordered region (IsUnstruct)
***LYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV********SQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY*************************
Disordered Region (DISOPRED)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVY****************VTIADS************
Disordered Region (DISEMBL)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
Disordered Region (DISPRO)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLYQKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q8LDP4	201	Peptidyl-prolyl cis-trans	no	no	0.793	0.651	0.674	8e-46
P52015	171	Peptidyl-prolyl cis-trans	yes	no	0.8	0.771	0.601	7e-43
P52011	173	Peptidyl-prolyl cis-trans	no	no	0.8	0.763	0.609	8e-43
Q9SP02	204	Peptidyl-prolyl cis-trans	no	no	0.806	0.651	0.604	4e-42
Q9TW32	197	Peptidyl-prolyl cis-trans	yes	no	0.787	0.659	0.625	3e-41
Q9SKQ0	174	Peptidyl-prolyl cis-trans	no	no	0.8	0.758	0.601	3e-41
P34790	172	Peptidyl-prolyl cis-trans	no	no	0.8	0.767	0.571	6e-40
Q39613	172	Peptidyl-prolyl cis-trans	N/A	no	0.8	0.767	0.571	1e-39
Q38867	176	Peptidyl-prolyl cis-trans	no	no	0.8	0.75	0.571	3e-39
Q42406	172	Peptidyl-prolyl cis-trans	no	no	0.8	0.767	0.593	3e-39

>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2

 Score =  182 bits (462), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 101/132 (76%), Gaps = 1/132 (0%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G SGKPLH+KG  FHRI+  F+IQGGD   G+G G +SIYG  F DENFK+KH+ 
Sbjct: 70  GEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTG 129

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            GV+SM NSG D+NGSQFFITTV  SWLDG HVVFGKV+QGMD VY IE   G  SG P+
Sbjct: 130 PGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIE-AEGKQSGTPK 188

Query: 146 KKVTIADSGEIP 157
            KV IADSGE+P
Sbjct: 189 SKVVIADSGELP 200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|P52015|CYP7_CAEEL Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2

 Score =  172 bits (437), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH
Sbjct: 40  CTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  GV+SM N+GP++NGSQFF+ TVK +WLDG+HVVFG+V++G+D V  +EG  G+ SG 
Sbjct: 100 TGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGN-GSSSGT 158

Query: 144 PRKKVTIADSGEI 156
           P+ +  IAD G++
Sbjct: 159 PKSECLIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52011|CYP3_CAEEL Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1

 Score =  172 bits (436), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 100/133 (75%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GE G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH
Sbjct: 40  CTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGK
Sbjct: 100 TGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGK 158

Query: 144 PRKKVTIADSGEI 156
           P K   IAD G++
Sbjct: 159 PVKDCMIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SP02|CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1

 Score =  170 bits (430), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 97/134 (72%), Gaps = 1/134 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G +GK LH+KG  FHRI+  F++QGGD   G+G G +SIYG  F DENFK+KH
Sbjct: 71  CTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKH 130

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G +SM N+G D+NGSQFFITTV  SWLDG HVVFGKV+ GMD VY +E   G  SG 
Sbjct: 131 TGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVE-AEGNQSGT 189

Query: 144 PRKKVTIADSGEIP 157
           P+ KV I DSGE+P
Sbjct: 190 PKSKVVIVDSGELP 203

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Seems to be involved in root development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 98/131 (74%), Gaps = 1/131 (0%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G SGKPLH+K   FHRI+  F+IQGGD  RGDG G +SIYG  F DENFKIKHS 
Sbjct: 68  GEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSK 127

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFITTV  SWLDG H VFG+VI+GMD V  +E   G+ SG P 
Sbjct: 128 PGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLE-SIGSQSGTPS 186

Query: 146 KKVTIADSGEI 156
           K   I++SGE+
Sbjct: 187 KIAKISNSGEL 197

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 99/133 (74%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G SGKPLHFKG  FHR++  F+ QGGD  +G+G G +SIYG  F DENF+ KH
Sbjct: 41  CTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKH 100

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGK
Sbjct: 101 TGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE-KIGSSSGK 159

Query: 144 PRKKVTIADSGEI 156
           P K V IAD GEI
Sbjct: 160 PTKPVVIADCGEI 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G +GKPLHFKG  FHR++  F+ QGGD   G+G G +SIYG  F DENF+ KH
Sbjct: 40  CTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGK
Sbjct: 100 TGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIE-KVGSSSGK 158

Query: 144 PRKKVTIADSGEI 156
           P K V +AD G++
Sbjct: 159 PTKPVVVADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Triggers the activation of bacterial AvrRpt2 protease activity upon infection by P.syringae. Activated AvrRpt2 confers virulence in plant lacking the RPS2 resistance gene. In plants expressing RPS2, the AvrRpt2-mediated degradation of RIN4 activates RPS2, which induces hypersensitive response (HR) and plant resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 97/133 (72%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKGTG SGKPLH+K   FHR++ GF+ QGGD   G+G G +SIYG  F DENF  KH
Sbjct: 40  CTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G++SM N+GP++NGSQFFI T K  WLDG+HVVFG+V++GMD V AIE   G+ SG+
Sbjct: 100 TGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGR 158

Query: 144 PRKKVTIADSGEI 156
             KKV + D G++
Sbjct: 159 TAKKVVVEDCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Catharanthus roseus (taxid: 4058)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 96/133 (72%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GE G G +GK LH+KG  FHRI+ GF+ QGGD  RG+G G +SIYG  F DENFK+KH
Sbjct: 40  CTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G++SM NSGP++NGSQFFI T K SWLDG+HVVFGKV+ G + V A+E   G+  G 
Sbjct: 100 TGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAME-DVGSDMGN 158

Query: 144 PRKKVTIADSGEI 156
           P ++V I D GE+
Sbjct: 159 PSERVVIEDCGEL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q42406|CP18D_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 97/133 (72%), Gaps = 1/133 (0%)

Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G  GKPLHFKG  FHR++ GF+ QGGD    +G G +SIYG  F DENF  KH
Sbjct: 40  CTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKH 99

Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           + AG++SM NSGP++NGSQFFI T K SWLDG+HVVFG+V++G+D V AIE   G+ SGK
Sbjct: 100 TGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIE-KVGSDSGK 158

Query: 144 PRKKVTIADSGEI 156
             K VTI D G++
Sbjct: 159 TSKVVTITDCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
297802462	224	hypothetical protein ARALYDRAFT_491161 [	0.848	0.625	0.871	2e-66
15236227	224	Cyclophilin-like peptidyl-prolyl cis-tra	0.848	0.625	0.857	1e-65
224105187	225	predicted protein [Populus trichocarpa]	0.848	0.622	0.871	3e-65
388494638	223	unknown [Medicago truncatula]	0.963	0.713	0.771	4e-65
388493324	223	unknown [Lotus japonicus]	0.933	0.690	0.775	5e-65
449458594	223	PREDICTED: peptidyl-prolyl cis-trans iso	0.963	0.713	0.771	5e-64
157890960	223	putative peptidyl-prolyl cis-trans isome	0.842	0.623	0.834	5e-64
255586434	219	peptidyl-prolyl cis-trans isomerase, put	0.781	0.589	0.914	5e-63
224078226	173	predicted protein [Populus trichocarpa]	0.8	0.763	0.901	8e-63
225427987	223	PREDICTED: peptidyl-prolyl cis-trans iso	0.842	0.623	0.848	8e-63

>gi|297802462|ref|XP_002869115.1| hypothetical protein ARALYDRAFT_491161 [Arabidopsis lyrata subsp. lyrata] gi|297314951|gb|EFH45374.1| hypothetical protein ARALYDRAFT_491161 [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 132/140 (94%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG  +SGKPLH+KG PFHRI+SGFVIQGGDI+ GDGK S+SIYGGTFPDENFKIKHSH
Sbjct: 85  GEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKSSESIYGGTFPDENFKIKHSH 144

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AGVV+M N+GPDSNGSQFFITTVKASWL+GEHVVFGKVIQGMD V+AIEGGAGTYSGKPR
Sbjct: 145 AGVVAMANTGPDSNGSQFFITTVKASWLEGEHVVFGKVIQGMDNVFAIEGGAGTYSGKPR 204

Query: 146 KKVTIADSGEIPKNKWDEER 165
           KKV IADSGEIPK+KWDEER
Sbjct: 205 KKVVIADSGEIPKDKWDEER 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236227|ref|NP_195222.1| Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] gi|2924507|emb|CAA17761.1| cyclophilin-like protein [Arabidopsis thaliana] gi|7270447|emb|CAB80213.1| cyclophilin-like protein [Arabidopsis thaliana] gi|26450419|dbj|BAC42324.1| putative cyclophilin like protein ROC14 [Arabidopsis thaliana] gi|28827322|gb|AAO50505.1| putative cyclophilin [Arabidopsis thaliana] gi|45680864|gb|AAS75301.1| single domain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|332661041|gb|AEE86441.1| Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/140 (85%), Positives = 131/140 (93%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG  +SGKPLH+KG PFHRI+SGFVIQGGDI+ GDGK SDSIYGGTFPDENFKI+HSH
Sbjct: 85  GEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKSSDSIYGGTFPDENFKIQHSH 144

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AG+V+M N+GPDSNGSQFFITTVKASWL+GEHVV GKVIQGMD V+AIEGGAGTYSGKPR
Sbjct: 145 AGMVAMANTGPDSNGSQFFITTVKASWLEGEHVVLGKVIQGMDNVFAIEGGAGTYSGKPR 204

Query: 146 KKVTIADSGEIPKNKWDEER 165
           KKV IADSGEIPK+KWDEER
Sbjct: 205 KKVVIADSGEIPKDKWDEER 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105187|ref|XP_002313720.1| predicted protein [Populus trichocarpa] gi|222850128|gb|EEE87675.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 130/140 (92%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           G K  GASGK LH+KG PFHRI+SGF+IQGGD+V GDG+GSDSIYG  FPDENFKIKHSH
Sbjct: 86  GTKHKGASGKALHYKGIPFHRIISGFMIQGGDVVYGDGRGSDSIYGSVFPDENFKIKHSH 145

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AGVVSMVNSGP+SNGSQFFITT+KASWLDGEHVVFGKVIQGMD VYAIEGGAGTYSGKPR
Sbjct: 146 AGVVSMVNSGPNSNGSQFFITTIKASWLDGEHVVFGKVIQGMDIVYAIEGGAGTYSGKPR 205

Query: 146 KKVTIADSGEIPKNKWDEER 165
           KKV IADSGEIPK+KWDEER
Sbjct: 206 KKVIIADSGEIPKDKWDEER 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494638|gb|AFK35385.1| unknown [Medicago truncatula]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 139/166 (83%), Gaps = 7/166 (4%)

Query: 6   QKLLKIS-GLYAQYI------WYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDI 58
           Q+L +I  GLY Q +      +     GEKG  ASG  LH+KG PFHRIVSGFVIQGGDI
Sbjct: 57  QRLGRIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDI 116

Query: 59  VRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHV 118
           V  DGK S+SIYGGTFPDENF+IKHSHAGVVSM NSGPDSNGSQFF TTVKASWLDG+HV
Sbjct: 117 VHRDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFFTTVKASWLDGDHV 176

Query: 119 VFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEE 164
           VFGKV+QGMDTV+AIEGGAGTYSGKPRKKV IADSGEIPK+KWDEE
Sbjct: 177 VFGKVVQGMDTVFAIEGGAGTYSGKPRKKVVIADSGEIPKSKWDEE 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493324|gb|AFK34728.1| unknown [Lotus japonicus]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/160 (77%), Positives = 136/160 (85%), Gaps = 6/160 (3%)

Query: 11  ISGLYAQYI------WYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGK 64
           + GLY Q +      +     GEKG GA+G  LH+KG PFHRI+SGFVIQGGDIV  DGK
Sbjct: 63  VIGLYGQVVPKTVENFRALCTGEKGAGANGIKLHYKGTPFHRIISGFVIQGGDIVHHDGK 122

Query: 65  GSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI 124
            S+SIYGGTFPDENF+IKHSHAGVVSM NSGPDSNGSQFFITTVKASWLDGEHVVFGKV+
Sbjct: 123 ASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVV 182

Query: 125 QGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEE 164
           QGMD V+AIEGGAGTYSGKPRKKV IADSGEIPK++WDEE
Sbjct: 183 QGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIPKSRWDEE 222

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458594|ref|XP_004147032.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus] gi|449489666|ref|XP_004158380.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 139/166 (83%), Gaps = 7/166 (4%)

Query: 6   QKLLKIS-GLYAQYI------WYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDI 58
           Q+L +I  GLY Q +      +     GE G   SGK LH+KG  FHRIVSGFVIQGGDI
Sbjct: 57  QRLGRIVIGLYGQVVPKTVENFRALCTGENGKTTSGKALHYKGTLFHRIVSGFVIQGGDI 116

Query: 59  VRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHV 118
           + GDGKG +SIYGGTF DENF+IKHSHAGVVSMVNSGPDSNGSQFFITT+K+SWLDGEHV
Sbjct: 117 LYGDGKGYESIYGGTFADENFRIKHSHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHV 176

Query: 119 VFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKWDEE 164
           VFGKVIQGMD VYAIEGGAGTYSGKPRKKVTIADSGEIPK+KWDEE
Sbjct: 177 VFGKVIQGMDYVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEE 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157890960|dbj|BAF81521.1| putative peptidyl-prolyl cis-trans isomerase [Brassica rapa]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/139 (83%), Positives = 129/139 (92%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG  +SGKPLH+KG  FHRIVSGFV+QGGDI+ GDGKGS+S YGGTFPDENFK KHSH
Sbjct: 85  GEKGQASSGKPLHYKGTQFHRIVSGFVVQGGDIIHGDGKGSESTYGGTFPDENFKAKHSH 144

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AGVV+M N+GPDSNGSQFFITT+KA+WL+GEHVVFGKVIQGMD V+AIEGGAGTYSGKPR
Sbjct: 145 AGVVAMANTGPDSNGSQFFITTIKATWLEGEHVVFGKVIQGMDNVFAIEGGAGTYSGKPR 204

Query: 146 KKVTIADSGEIPKNKWDEE 164
           KKV IADSGEIP++KWDEE
Sbjct: 205 KKVVIADSGEIPQDKWDEE 223

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586434|ref|XP_002533862.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223526199|gb|EEF28526.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/129 (91%), Positives = 124/129 (96%)

Query: 37  LHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGP 96
           LH+KG PFHRIVSGFVIQGGDIV GDG+GS+SIYGGTFPDENFKIK+SH G V+MVNSGP
Sbjct: 91  LHYKGTPFHRIVSGFVIQGGDIVHGDGRGSESIYGGTFPDENFKIKNSHPGAVAMVNSGP 150

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKV IADSGEI
Sbjct: 151 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVVIADSGEI 210

Query: 157 PKNKWDEER 165
           PK+KWDEER
Sbjct: 211 PKSKWDEER 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078226|ref|XP_002305507.1| predicted protein [Populus trichocarpa] gi|222848471|gb|EEE86018.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 119/132 (90%), Positives = 125/132 (94%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG GASGKPLH+KG PFHRI+SGF+IQGGDIV GDG+GSDSIYG  FPDENFKIKHSH
Sbjct: 42  GEKGKGASGKPLHYKGTPFHRIISGFMIQGGDIVYGDGRGSDSIYGSIFPDENFKIKHSH 101

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AGVVSMVNSGP+SNGSQFFITT+K SWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR
Sbjct: 102 AGVVSMVNSGPNSNGSQFFITTIKTSWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 161

Query: 146 KKVTIADSGEIP 157
           KKV IADSGEIP
Sbjct: 162 KKVIIADSGEIP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427987|ref|XP_002277717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Vitis vinifera] gi|297744629|emb|CBI37891.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/139 (84%), Positives = 128/139 (92%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG GASGK LH+KG PFHRI+SGF+IQGGD V GDG+GS+SIYGGTF DENF+IKHSH
Sbjct: 84  GEKGKGASGKKLHYKGTPFHRIISGFMIQGGDTVHGDGRGSESIYGGTFRDENFRIKHSH 143

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
           AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVV GKVIQGMD VY IEGGAGTY+GKPR
Sbjct: 144 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVLGKVIQGMDIVYTIEGGAGTYNGKPR 203

Query: 146 KKVTIADSGEIPKNKWDEE 164
           KKV I+DSGEIPK+ W+EE
Sbjct: 204 KKVVISDSGEIPKSDWEEE 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2131546	224	AT4G34960 [Arabidopsis thalian	0.848	0.625	0.857	4.1e-65
TAIR|locus:2045663	201	CYP5 "cyclophilin 5" [Arabidop	0.793	0.651	0.674	1e-45
TAIR|locus:2081993	228	AT3G55920 [Arabidopsis thalian	0.787	0.570	0.648	2.5e-42
TAIR|locus:2178863	204	ROC7 "rotamase CYP 7" [Arabido	0.793	0.642	0.613	2.5e-42
WB|WBGene00000879	173	cyn-3 [Caenorhabditis elegans	0.787	0.751	0.618	2.5e-42
WB|WBGene00000883	171	cyn-7 [Caenorhabditis elegans	0.787	0.760	0.610	2.5e-42
UNIPROTKB|P52011	173	cyn-3 "Peptidyl-prolyl cis-tra	0.787	0.751	0.618	2.5e-42
DICTYBASE|DDB_G0269120	197	cypB "cyclophilin B" [Dictyost	0.787	0.659	0.625	2.8e-41
TAIR|locus:2047097	174	AT2G21130 [Arabidopsis thalian	0.787	0.747	0.610	3.6e-41
TAIR|locus:2141747	172	ROC1 "rotamase CYP 1" [Arabido	0.787	0.755	0.580	4.2e-40

TAIR|locus:2131546 AT4G34960 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 120/140 (85%), Positives = 131/140 (93%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG  +SGKPLH+KG PFHRI+SGFVIQGGDI+ GDGK SDSIYGGTFPDENFKI+HSH
Sbjct:    85 GEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIHGDGKSSDSIYGGTFPDENFKIQHSH 144

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
             AG+V+M N+GPDSNGSQFFITTVKASWL+GEHVV GKVIQGMD V+AIEGGAGTYSGKPR
Sbjct:   145 AGMVAMANTGPDSNGSQFFITTVKASWLEGEHVVLGKVIQGMDNVFAIEGGAGTYSGKPR 204

Query:   146 KKVTIADSGEIPKNKWDEER 165
             KKV IADSGEIPK+KWDEER
Sbjct:   205 KKVVIADSGEIPKDKWDEER 224

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2045663 CYP5 "cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 89/132 (67%), Positives = 101/132 (76%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G SGKPLH+KG  FHRI+  F+IQGGD   G+G G +SIYG  F DENFK+KH+ 
Sbjct:    70 GEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTG 129

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              GV+SM NSG D+NGSQFFITTV  SWLDG HVVFGKV+QGMD VY IE   G  SG P+
Sbjct:   130 PGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEA-EGKQSGTPK 188

Query:   146 KKVTIADSGEIP 157
              KV IADSGE+P
Sbjct:   189 SKVVIADSGELP 200

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2081993 AT3G55920 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 85/131 (64%), Positives = 97/131 (74%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G  GKPL+FKG  FHRI+ GF+IQGGD  RGDG+G +SIYG  F DENFK+KH+ 
Sbjct:    97 GEKGVGNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTG 156

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              G +SM NSGPDSNGSQFFITTV  SWLDG HVVFGKV+ GM+ V  IE   G  SG P+
Sbjct:   157 PGFLSMANSGPDSNGSQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKIEA-QGQDSGVPK 215

Query:   146 KKVTIADSGEI 156
               V I  SGE+
Sbjct:   216 ANVIIFASGEV 226

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2178863 ROC7 "rotamase CYP 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 81/132 (61%), Positives = 97/132 (73%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G +GK LH+KG  FHRI+  F++QGGD   G+G G +SIYG  F DENFK+KH+ 
Sbjct:    73 GEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTG 132

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              G +SM N+G D+NGSQFFITTV  SWLDG HVVFGKV+ GMD VY +E   G  SG P+
Sbjct:   133 PGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEA-EGNQSGTPK 191

Query:   146 KKVTIADSGEIP 157
              KV I DSGE+P
Sbjct:   192 SKVVIVDSGELP 203

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0048364 "root development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 81/131 (61%), Positives = 100/131 (76%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GE G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+ 
Sbjct:    42 GENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGKP 
Sbjct:   102 PGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPV 160

Query:   146 KKVTIADSGEI 156
             K   IAD G++
Sbjct:   161 KDCMIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005623 "cell" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 80/131 (61%), Positives = 102/131 (77%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+ 
Sbjct:    42 GEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              GV+SM N+GP++NGSQFF+ TVK +WLDG+HVVFG+V++G+D V  +EG  G+ SG P+
Sbjct:   102 PGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGN-GSSSGTPK 160

Query:   146 KKVTIADSGEI 156
              +  IAD G++
Sbjct:   161 SECLIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 81/131 (61%), Positives = 100/131 (76%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GE G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+ 
Sbjct:    42 GENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGKP 
Sbjct:   102 PGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPV 160

Query:   146 KKVTIADSGEI 156
             K   IAD G++
Sbjct:   161 KDCMIADCGQL 171

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 82/131 (62%), Positives = 98/131 (74%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G SGKPLH+K   FHRI+  F+IQGGD  RGDG G +SIYG  F DENFKIKHS 
Sbjct:    68 GEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSK 127

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              G++SM N+GP++NGSQFFITTV  SWLDG H VFG+VI+GMD V  +E   G+ SG P 
Sbjct:   128 PGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLES-IGSQSGTPS 186

Query:   146 KKVTIADSGEI 156
             K   I++SGE+
Sbjct:   187 KIAKISNSGEL 197

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 80/131 (61%), Positives = 99/131 (75%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G SGKPLHFKG  FHR++  F+ QGGD  +G+G G +SIYG  F DENF+ KH+ 
Sbjct:    43 GEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTG 102

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGKP 
Sbjct:   103 PGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEK-IGSSSGKPT 161

Query:   146 KKVTIADSGEI 156
             K V IAD GEI
Sbjct:   162 KPVVIADCGEI 172

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2141747 ROC1 "rotamase CYP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 76/131 (58%), Positives = 98/131 (74%)

Query:    26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             GEKG G +GKPLHFKG  FHR++  F+ QGGD   G+G G +SIYG  F DENF+ KH+ 
Sbjct:    42 GEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTG 101

Query:    86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
              G++SM N+G ++NGSQFFI TVK  WLDG+HVVFG+V++G+D V AIE   G+ SGKP 
Sbjct:   102 PGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEK-VGSSSGKPT 160

Query:   146 KKVTIADSGEI 156
             K V +AD G++
Sbjct:   161 KPVVVADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009585 "red, far-red light phototransduction" evidence=IGI

GO:0009704 "de-etiolation" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009785 "blue light signaling pathway" evidence=IGI

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.6259	0.7878	0.6598	yes	no
O94273	PPIB_SCHPO	5, ., 2, ., 1, ., 8	0.5107	0.8	0.6567	yes	no
P25719	CYPC_YEAST	5, ., 2, ., 1, ., 8	0.5639	0.7575	0.6868	yes	no
P52015	CYP7_CAEEL	5, ., 2, ., 1, ., 8	0.6015	0.8	0.7719	yes	no
P24367	PPIB_CHICK	5, ., 2, ., 1, ., 8	0.5925	0.7757	0.6183	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__594__AT4G34960.1 annotation not avaliable (224 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	4e-66
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	1e-57
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-47
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	9e-44
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	9e-42
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	9e-38
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	4e-36
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	2e-33
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	4e-33
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-31
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-29
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	3e-21
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	6e-13
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	4e-10
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	8e-09
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	3e-08
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	8e-07

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  198 bits (506), Expect = 4e-66
 Identities = 81/129 (62%), Positives = 99/129 (76%), Gaps = 3/129 (2%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G  GKP  +KG  FHR++  F+IQGGD  RG+G G  SIYG  FPDENFK+KH+ 
Sbjct: 39  GEKGKG--GKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTG 96

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFITTVK  WLDG+HVVFGKV++GMD V  IE   G+ +GKP+
Sbjct: 97  PGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIE-NVGSGNGKPK 155

Query: 146 KKVTIADSG 154
           KKV IAD G
Sbjct: 156 KKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  177 bits (451), Expect = 1e-57
 Identities = 78/132 (59%), Positives = 98/132 (74%), Gaps = 2/132 (1%)

Query: 25  IGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           IG+K  G+SGK LH+KG  FHRI+  F+ QGGDI   +G G +SIYG  F DENFK+KH 
Sbjct: 53  IGDK-VGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHD 111

Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
             G++SM N+GP++NGSQFFITTV   WLDG+HVVFGKVI+GM+ V A+E   GT SG P
Sbjct: 112 QPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAME-KEGTQSGYP 170

Query: 145 RKKVTIADSGEI 156
           +K V + D GE+
Sbjct: 171 KKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  150 bits (381), Expect = 2e-47
 Identities = 61/116 (52%), Positives = 76/116 (65%), Gaps = 3/116 (2%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK-HSHAGVVSMVNSGP 96
            + G  FHR++ GF+IQGGD     G GS    G  FPDENF +K H   G +SM N+GP
Sbjct: 33  FYDGTTFHRVIPGFMIQGGDPTGTGGGGS--GPGYKFPDENFPLKYHHRRGTLSMANAGP 90

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           ++NGSQFFITT     LDG+H VFGKV++GMD V  IE G    +G+P K VTI+D
Sbjct: 91  NTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  142 bits (360), Expect = 9e-44
 Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
           +G P  +KG  FHR++  F+IQGGD ++GDG G  SIYG  F DENF  KH+  G++SM 
Sbjct: 62  AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMA 121

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSGKPRKKVTIA 151
           NSGP++NG QFFIT  K  WLD +HVVFG+V+  G+  V  IE  A   + +P+    I+
Sbjct: 122 NSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIS 181

Query: 152 DSGEI 156
           + GE+
Sbjct: 182 ECGEM 186

Length = 186

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  136 bits (344), Expect = 9e-42
 Identities = 50/115 (43%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
            + G  FHR++ GF+IQGGD       G  SI     PDE         G +SM  SGP+
Sbjct: 35  FYDGTIFHRVIPGFMIQGGDPTGPGTGGKRSI-----PDEFVSKLKHKRGTLSMARSGPN 89

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           S GSQFFIT   A  LDG + VFG+V++GMD V  IE    T   +P K V I  
Sbjct: 90  SAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVEKIEKV-ETDGDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  126 bits (319), Expect = 9e-38
 Identities = 53/130 (40%), Positives = 70/130 (53%), Gaps = 10/130 (7%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH--AGVVSMV 92
           K   + G  FHR++ GF+IQGGD   GDG G        F DENF +       G +SM 
Sbjct: 32  KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMA 88

Query: 93  NSG-PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGG----AGTYSGKPRKK 147
            +G P+SNGSQFFIT V   +LDG++ VFG+V++GMD V  I+ G    +G     P   
Sbjct: 89  RAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADP 148

Query: 148 VTIADSGEIP 157
           V I     + 
Sbjct: 149 VKILSVKIVE 158

Length = 158

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  122 bits (307), Expect = 4e-36
 Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 2/114 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++    FHR++ GF+IQ GD   GDG G +SI+G  F DE +  +KH     +SM N+GP
Sbjct: 33  YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGP 91

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           ++NGSQFFITTV   WLD +H VFG+V++GMD V  IE      + +P + + I
Sbjct: 92  NTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKI 145

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  115 bits (289), Expect = 2e-33
 Identities = 56/122 (45%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 32  ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVS 90
           ASG   ++ G  FHR + GF++Q GD   G GKG +SI+G  F DE  + +KH   GVVS
Sbjct: 33  ASG---YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHDSRGVVS 88

Query: 91  MVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           M N+GP++NGSQFFIT  K   LDG++ VFGKVI G +T+  +E        +P +++ I
Sbjct: 89  MANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRI 148

Query: 151 AD 152
            D
Sbjct: 149 KD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  114 bits (287), Expect = 4e-33
 Identities = 51/117 (43%), Positives = 76/117 (64%), Gaps = 2/117 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHR +  F+IQGGD   G G+G +SI+G  F DE    + H   GV+SM NSGP
Sbjct: 35  YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGP 93

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153
           ++NGSQFFIT      LDG+H VFG+V+ G++T+ A+E      + +P++++ I D+
Sbjct: 94  NTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDT 150

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  109 bits (273), Expect = 4e-31
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHR++  F+IQGGD   G G+G  SIYG  F DE + ++KH+ AG++SM N+GP
Sbjct: 33  YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGP 91

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           ++NGSQFFIT     WLDG+H +FG+V +GM  +  +     T + +P  +V I
Sbjct: 92  NTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENM-VEVQTQTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  104 bits (262), Expect = 3e-29
 Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++    FHR+V GF+IQGGD   G G G +SIYG  F DE + +++ +  G+V M N+G 
Sbjct: 41  YYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGD 99

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVY 131
           DSNGSQFF T  KA  L+ +H +FGKV    DT+Y
Sbjct: 100 DSNGSQFFFTLDKADELNNKHTLFGKVTG--DTIY 132

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 84.3 bits (209), Expect = 3e-21
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 41  GKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE--------NFKIKHSHAGVVSMV 92
              F+ +   F+ Q GD   G G G +SIY   +  +           +KHS  G VSMV
Sbjct: 36  FCLFYNVQKDFIAQTGD-PTGTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMV 94

Query: 93  NSGPDSNGSQFFITTVKAS-WLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           N+G + NGSQF+IT  +   +LDG+H VFG+V++G D +  I        G+P K + I
Sbjct: 95  NAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRI 153

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 64.1 bits (156), Expect = 6e-13
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 24  IIGEKGT-GASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSD-SIYGGTFPDENFKI 81
           I G  G    +G  L +   P H +          IV G+    + S  G    DE ++ 
Sbjct: 89  ITGSCGIDTNTGVKLDYLYTPVHHVDR----NNNIIVLGELDSFNVSSTGTPIADEGYRH 144

Query: 82  KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS 141
           +H+  G+++M++ GP ++GS F IT   +  LD + VVFGK +  +  +  +E       
Sbjct: 145 RHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204

Query: 142 GKPRKKVTI----ADSGEIPKNKW 161
           G+P   VT+    A +GE P  + 
Sbjct: 205 GRPLLPVTVSFCGALTGEKPPGRQ 228

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 42/128 (32%), Positives = 56/128 (43%), Gaps = 19/128 (14%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFP---DENFKIKHSHAGVVSMVNS 94
            +    FHR++SGFVIQGG      G   D     T     +E      +  G ++M  +
Sbjct: 33  FYDNTIFHRVISGFVIQGG------GFTPDLAQKETLKPIKNEAGNGLSNTRGTIAMART 86

Query: 95  G-PDSNGSQFFITTVKASWLD-----GEHVVFGKVIQGMDTVYAIEGGA----GTYSGKP 144
             PDS  SQFFI     + LD       + VFG+V +GMD V  I G      G+Y   P
Sbjct: 87  NAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVP 146

Query: 145 RKKVTIAD 152
            + V I  
Sbjct: 147 VQDVIIES 154

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 27/136 (19%)

Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH-------SHAGVVSM 91
           +    FHR++ GF+IQGG      G              N  IK+       +  G ++M
Sbjct: 65  YNNTTFHRVIPGFMIQGG------GFTEQMQQKKP----NPPIKNEADNGLRNTRGTIAM 114

Query: 92  V-NSGPDSNGSQFFITTVKASWLD-GE----HVVFGKVIQGMDTVYAIE----GGAGTYS 141
              +  DS  SQFFI     ++LD G+    + VFGKV++GMD    I        G Y 
Sbjct: 115 ARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQ 174

Query: 142 GKPRKKVTIADSGEIP 157
             P K V I  +  +P
Sbjct: 175 NVPSKPVVILSAKVLP 190

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 40/133 (30%)

Query: 41  GKPFHRIVSGFVIQGGD-----------------------IVRGDGKGSDSIYGGTF--- 74
           G  FHR+  GFV+Q GD                          G  +    +YG T    
Sbjct: 36  GMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ---PVYGKTLEEA 92

Query: 75  --PDENFKIKHSHAGVVSMVNS--GPDSNGSQFFI-------TTVKASWLDGEHVVFGKV 123
              DE   +  +  G ++M  +   P+S  SQFF        T  + + LDG + VFG V
Sbjct: 93  GRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152

Query: 124 IQGMDTVYAIEGG 136
             G+D +  ++ G
Sbjct: 153 TDGLDILRELKVG 165

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 20/122 (16%)

Query: 44  FHRIVSGFVIQGGDIVRG-DGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSG-PDSNG 100
           FHR+++GF+IQGG    G   K +         +E N  +K++  G ++M  +  P S  
Sbjct: 41  FHRVINGFMIQGGGFEPGMKQKATKE----PIKNEANNGLKNTR-GTLAMARTQAPHSAT 95

Query: 101 SQFFITTVKASWLD--GE------HVVFGKVIQGMDTVYAIEGGAGTYSGK----PRKKV 148
           +QFFI  V   +L+  GE      + VF +V++GMD V  I+G A   SG     P++ V
Sbjct: 96  AQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDV 155

Query: 149 TI 150
            I
Sbjct: 156 II 157

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.67
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	93.04
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	90.16
PRK00969	508	hypothetical protein; Provisional	89.88
PRK00969	508	hypothetical protein; Provisional	89.7
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	89.69
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	88.87
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	81.91

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-53  Score=345.33  Aligned_cols=152  Identities=47%  Similarity=0.787  Sum_probs=147.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCC-CCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGT-GASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~-~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =|||||||.|.||      ++||+|++|. ...++.++|+|+.|||||++|||||||++.++|+||.||||..|+||++.
T Consensus        23 GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDEnF~  102 (372)
T KOG0546|consen   23 GRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDENFE  102 (372)
T ss_pred             ceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccccccccce
Confidence            3999999999999      8999999995 35789999999999999999999999999999999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+++++|||||.|||+||||||||+.++|||||+|+|||+||+|++|++.|+.+.++..++|..+|+|.+||+|...
T Consensus       103 lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  103 LKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKK  181 (372)
T ss_pred             eccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999866

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-50  Score=302.27  Aligned_cols=148  Identities=52%  Similarity=0.904  Sum_probs=141.7

Q ss_pred             eEEEEEEEcCCccc------cceee-eccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc
Q 031152            7 KLLKISGLYAQYIW------YFPII-GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF   79 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~-g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~   79 (165)
                      .-||||+||++.+|      ..||+ +++|++       |.+++||||+|||+|||||.+.+++.++.|+||..|+||++
T Consensus        53 ~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf  125 (217)
T KOG0880|consen   53 VGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENF  125 (217)
T ss_pred             ccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccc
Confidence            35999999999999      77898 888876       99999999999999999999999999999999999999999


Q ss_pred             cccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           80 KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        80 ~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      .++|+++|.||||+.||++||||||||+...+|||++|+|||+|++||++|.+|+.+.++..++|.++++|.+||.|+.+
T Consensus       126 ~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~  205 (217)
T KOG0880|consen  126 KLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVE  205 (217)
T ss_pred             eeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CC
Q 031152          160 KW  161 (165)
Q Consensus       160 ~~  161 (165)
                      ..
T Consensus       206 ~~  207 (217)
T KOG0880|consen  206 YL  207 (217)
T ss_pred             ch
Confidence            43

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-46  Score=264.02  Aligned_cols=148  Identities=45%  Similarity=0.753  Sum_probs=140.6

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .-||.||||.|.+|      +.+|+|+.-  ..+++.-|+++.|||+|++|+|||||..+++|+|..|+|+..++||++.
T Consensus        24 ~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DENFt  101 (177)
T KOG0879|consen   24 IGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDENFT  101 (177)
T ss_pred             cceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCccee
Confidence            34999999999999      789999864  3456677999999999999999999999999999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+.+|+||||++++++||+|||||..++.+||++|+|||||++|+.++++|+.+++-.+++|+-+|+|+.||++
T Consensus       102 lkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  102 LKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM  177 (177)
T ss_pred             eecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2.4e-43  Score=278.17  Aligned_cols=152  Identities=25%  Similarity=0.345  Sum_probs=137.1

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCC-CCCCCcccCCCeEEEEeCC-cEEEeeeCCCCCCCCCCcccCCCCCCCCc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTG-ASGKPLHFKGKPFHRIVSG-FVIQGGDIVRGDGKGSDSIYGGTFPDENF   79 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~-~~~~~~~Y~g~~f~rii~~-~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~   79 (165)
                      =||+||||.|.||      +.||+|+.+.+ ..+++.+|+++.||||+++ ++||+||+..    .+.+++|..+++|++
T Consensus        67 GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~~f~dE~~  142 (249)
T PTZ00221         67 GRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGTPIADEGY  142 (249)
T ss_pred             ceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCCcccCccc
Confidence            3899999999999      88999887653 2345567999999999986 8999999863    244677899999999


Q ss_pred             cccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           80 KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        80 ~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      .++|+++|+|||++.++++++||||||+.++|+||++|+|||||++||+||++|++.+++.+++|..+|+|.+||+|..+
T Consensus       143 ~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~  222 (249)
T PTZ00221        143 RHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGE  222 (249)
T ss_pred             cccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCC
Q 031152          160 KWDE  163 (165)
Q Consensus       160 ~~~~  163 (165)
                      ++.+
T Consensus       223 ~p~~  226 (249)
T PTZ00221        223 KPPG  226 (249)
T ss_pred             CCCc
Confidence            7754

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=3.3e-43  Score=268.01  Aligned_cols=148  Identities=51%  Similarity=0.868  Sum_probs=134.7

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      +.||++..... .++..||+++.||||+|+++||+||+...++.++.++|+..+++|...+
T Consensus        30 G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~~~~  108 (183)
T PTZ00060         30 GRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKL  108 (183)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCccccc
Confidence            3899999999999      78998765432 4467799999999999999999999987788888899999999998889


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      .|+.+|+|||++.++++++||||||+.++|+||++|+|||||++|||||++|++..+ .+++|.++|+|.+||+|.
T Consensus       109 ~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~~cg~~~  183 (183)
T PTZ00060        109 KHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGELQ  183 (183)
T ss_pred             cCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEEEeEEcC
Confidence            999999999999999999999999999999999999999999999999999997665 578999999999999984

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=3.9e-43  Score=263.51  Aligned_cols=144  Identities=56%  Similarity=0.986  Sum_probs=132.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =+|+||||.+.||      +.||++.+|.+.  +..||+++.||||+|+|+||+||+...++.++.++|+..+++|...+
T Consensus        15 G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~~   92 (164)
T cd01926          15 GRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKL   92 (164)
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCccc
Confidence            3899999999999      789987666322  44579999999999999999999877788888899999999998889


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG  154 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg  154 (165)
                      .|+.+|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.+++ +++|..+|+|.+||
T Consensus        93 ~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG  164 (164)
T cd01926          93 KHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG  164 (164)
T ss_pred             cCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence            9989999999999999999999999999999999999999999999999999999988 99999999999997

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=7.2e-43  Score=260.82  Aligned_cols=143  Identities=36%  Similarity=0.571  Sum_probs=131.9

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      ||+||||.+.||      +.||+          .+||+++.||||+|+|+||+||+. .++.++.++|+..+++|.. .+
T Consensus        10 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~   78 (159)
T cd01923          10 DLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNL   78 (159)
T ss_pred             cEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCc
Confidence            799999999999      66773          336999999999999999999985 6778888999999999954 67


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW  161 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~~  161 (165)
                      .|+.+|+|||+++++++++||||||++++|+||++|+|||||++|||+|++|++.+++++++|+.+|+|.+|+++.+|+.
T Consensus        79 ~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~  158 (159)
T cd01923          79 SHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE  158 (159)
T ss_pred             CcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence            89899999999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C
Q 031152          162 D  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       159 ~  159 (159)
T cd01923         159 E  159 (159)
T ss_pred             C
Confidence            4

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=3.7e-43  Score=268.22  Aligned_cols=147  Identities=44%  Similarity=0.744  Sum_probs=133.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.+|      +.||+++..  ..+....|+++.||||+|+|+|||||+..++++++.++|+..+++|...+
T Consensus        33 G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~  110 (186)
T PLN03149         33 GRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIA  110 (186)
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccccc
Confidence            3899999999999      789977642  11223349999999999999999999977888888899999999998888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi-~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      .|+.+|+|||++.++++++||||||+.++|+||++|+|||||+ +||+||++|+++.++++++|..+|+|.+||++
T Consensus       111 ~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        111 KHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM  186 (186)
T ss_pred             ccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence            9999999999999999999999999999999999999999999 79999999999999999999999999999985

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=1.2e-42  Score=261.33  Aligned_cols=144  Identities=33%  Similarity=0.472  Sum_probs=128.5

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccC-------CCCC
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYG-------GTFP   75 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g-------~~~~   75 (165)
                      ||+||||.+.||      +.||+          ..||+++.||||+|+|+|||||+. .++.++.++++       ..++
T Consensus         8 ~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~   76 (166)
T cd01921           8 DLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFE   76 (166)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccC
Confidence            799999999999      67883          346999999999999999999996 56666666654       3466


Q ss_pred             CCCc-cccCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeee
Q 031152           76 DENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVK-ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS  153 (165)
Q Consensus        76 ~e~~-~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~-~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~c  153 (165)
                      +|.. .++|+.+|+||||+.++++++||||||+.+ +|+||++|+|||||++|||||++|++.+++++++|..+|+|.+|
T Consensus        77 ~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~  156 (166)
T cd01921          77 PEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHT  156 (166)
T ss_pred             cccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEE
Confidence            6654 678989999999999999999999999975 89999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCC
Q 031152          154 GEIPKNKWDE  163 (165)
Q Consensus       154 g~l~~~~~~~  163 (165)
                      ++|.+|+.|+
T Consensus       157 ~i~~~pf~~~  166 (166)
T cd01921         157 HILDDPFPDP  166 (166)
T ss_pred             EEECCCCCCC
Confidence            9999999885

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-44  Score=272.14  Aligned_cols=143  Identities=49%  Similarity=0.847  Sum_probs=138.5

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .-||++.|..|..|      ++||+++.|++       |+|++||||||.|++||||.++++|+|+.|+||..|.+|++.
T Consensus       150 ~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~  222 (298)
T KOG0111|consen  150 AGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFT  222 (298)
T ss_pred             cceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCCCCccccccccccccee
Confidence            45999999999999      89999999998       999999999999999999999999999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      ++|..+|+||||++|+|+||||||||+....|||++|+|||.|++||+|+++++ ...++.++|...|.|.+||.+.
T Consensus       223 lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e-~qgsksgkp~qkv~i~~cge~~  298 (298)
T KOG0111|consen  223 LKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVE-QQGSKSGKPQQKVKIVECGEIE  298 (298)
T ss_pred             eecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHH-hccCCCCCcceEEEEEeccccC
Confidence            999999999999999999999999999999999999999999999999999999 6778899999999999999873

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.2e-41  Score=251.55  Aligned_cols=133  Identities=40%  Similarity=0.662  Sum_probs=123.3

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      ||+||||.+.||      +.||+          ..||+++.||||+|+|+||+||+. +++.++.++|+..+++|.. .+
T Consensus         8 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~   76 (148)
T cd01927           8 DIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSL   76 (148)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccccccc
Confidence            799999999999      66773          346999999999999999999985 6778888899999999976 78


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD  152 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~  152 (165)
                      +|+++|+|||++.++++++|||||++.++|+||++|+|||||++|||||++|++.+++++++|.++|+|.+
T Consensus        77 ~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          77 KHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             CcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            89989999999999999999999999999999999999999999999999999999999999999999986

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-43  Score=248.15  Aligned_cols=143  Identities=38%  Similarity=0.621  Sum_probs=127.1

Q ss_pred             EEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cccCCcce
Q 031152            9 LKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHSHAG   87 (165)
Q Consensus         9 rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~h~~~G   87 (165)
                      -|++|||-+.|| ..|......+   +.+||+|+.||||+++|+||||||+ ++|.|+.|+||..|++|-. .++|..+|
T Consensus        20 ~i~~ElY~kHaP-~TC~NF~eLa---rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF~DEi~~dLkhTGAG   94 (164)
T KOG0881|consen   20 KITLELYWKHAP-RTCQNFAELA---RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKFEDEIHSDLKHTGAG   94 (164)
T ss_pred             ceehhhhhhcCc-HHHHHHHHHH---hcccccceeeeehhhhheeecCCCC-CCCCCccccccchhhhhhhhhhcccchh
Confidence            478999999999 2222211111   3347999999999999999999996 8999999999999999954 89999999


Q ss_pred             EEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           88 VVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        88 ~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      .||||+.+||+|+|||||||.+.+|||++|++||||..||+|+.+|..+.++.+++|+.+++|.++-.+
T Consensus        95 ILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~  163 (164)
T KOG0881|consen   95 ILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS  163 (164)
T ss_pred             hhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999887543

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-41  Score=252.23  Aligned_cols=135  Identities=41%  Similarity=0.680  Sum_probs=119.4

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK   82 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~   82 (165)
                      ||+|+||++.||      ..||          +.+||+|+.||||+|+|+|||||+....+.++.   +.++++|+....
T Consensus        10 ~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~   76 (158)
T COG0652          10 DITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALN   76 (158)
T ss_pred             CEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccc
Confidence            699999999999      5666          344799999999999999999999877788877   588999988777


Q ss_pred             CCc--ceEEEEecCC-CCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC----CCCCcceEEeeeee
Q 031152           83 HSH--AGVVSMVNSG-PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS----GKPRKKVTIADSGE  155 (165)
Q Consensus        83 h~~--~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~----~~P~~~i~I~~cg~  155 (165)
                      |++  +|+||||+.+ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+...    ..|..+++|.+..+
T Consensus        77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (158)
T COG0652          77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI  156 (158)
T ss_pred             cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence            776  9999999998 9999999999999999999999999999999999999998777654    45667888888766


Q ss_pred             e
Q 031152          156 I  156 (165)
Q Consensus       156 l  156 (165)
                      +
T Consensus       157 ~  157 (158)
T COG0652         157 V  157 (158)
T ss_pred             e
Confidence            4

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=1.8e-41  Score=251.76  Aligned_cols=135  Identities=40%  Similarity=0.595  Sum_probs=124.8

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      ||+||||++.||      +.||+          ..||+++.|||++|+|++|+||+. +++.++.++|+..+++|.. .+
T Consensus        11 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~   79 (153)
T cd01928          11 DIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETL   79 (153)
T ss_pred             cEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCC
Confidence            799999999999      77884          236999999999999999999985 6677788889999999976 67


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG  154 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg  154 (165)
                      .|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++.+++++++|..+|+|.+|.
T Consensus        80 ~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          80 KHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             CcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            8888999999999999999999999999999999999999999999999999999999999999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=8e-41  Score=246.57  Aligned_cols=132  Identities=40%  Similarity=0.692  Sum_probs=120.6

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCC-ccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN-FKI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~-~~~   81 (165)
                      ||+||||.+.||      +.||+          .+||+++.|||++|+|+|||||+. +++.++.++|+..+++|. ..+
T Consensus         8 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~   76 (146)
T cd01922           8 EITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPEL   76 (146)
T ss_pred             cEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCc
Confidence            799999999999      66773          346999999999999999999985 567778888999999985 478


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD  152 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~  152 (165)
                      +|+++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.+++ +++|..+|+|.+
T Consensus        77 ~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          77 KHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             CCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            8999999999999999999999999999999999999999999999999999998888 889999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=275.55  Aligned_cols=141  Identities=37%  Similarity=0.587  Sum_probs=133.5

Q ss_pred             EEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-ccc
Q 031152           10 KISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIK   82 (165)
Q Consensus        10 ivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~   82 (165)
                      +-|||++|.+|      ..||          +.+||+|+.|||.|.+||||||||+ ++|.||.|+||.+|.||.. .+.
T Consensus       289 lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~  357 (518)
T KOG0883|consen  289 LNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLS  357 (518)
T ss_pred             eeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCC
Confidence            56999999999      6788          5568999999999999999999996 9999999999999999965 899


Q ss_pred             CCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCCC
Q 031152           83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW  161 (165)
Q Consensus        83 h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~~  161 (165)
                      |+.+|+||||++|||+|||||||+..++.+||++|+||||||.|+++|.+|+.+++++.++|+.+|+|.+.-|..+|+-
T Consensus       358 H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfe  436 (518)
T KOG0883|consen  358 HDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFE  436 (518)
T ss_pred             cCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999887753

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=1.4e-39  Score=245.70  Aligned_cols=144  Identities=33%  Similarity=0.470  Sum_probs=131.1

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =+|+||||.+.+|      +.||+          ..||+++.|||++|+|+|||||+. +++.++.++|+..+++|.. .
T Consensus        15 G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~   83 (171)
T cd01925          15 GDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSR   83 (171)
T ss_pred             ccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccC
Confidence            3799999999999      66773          336999999999999999999986 6778888999999999965 5


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~-G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      +.|+++|+|+|++.++++++|||||+++++|+||++|+|||||++ +++++++|++..++++++|..+|+|.+|+++.++
T Consensus        84 ~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~p  163 (171)
T cd01925          84 LRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENP  163 (171)
T ss_pred             cCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCC
Confidence            778899999999999999999999999999999999999999994 6899999999999999999999999999999988


Q ss_pred             CCC
Q 031152          160 KWD  162 (165)
Q Consensus       160 ~~~  162 (165)
                      +.|
T Consensus       164 f~~  166 (171)
T cd01925         164 FDD  166 (171)
T ss_pred             chh
Confidence            765

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-39  Score=267.38  Aligned_cols=139  Identities=41%  Similarity=0.643  Sum_probs=128.5

Q ss_pred             EEEEEEcCCccc---cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cccCC
Q 031152            9 LKISGLYAQYIW---YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHS   84 (165)
Q Consensus         9 rivieL~~d~aP---~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~h~   84 (165)
                      -|.|.||+++||   ..+|+..       +.+||+|..|||||++||||+|||+ ++|+||.|+||..|+||.. .++|+
T Consensus       415 di~~kl~p~ecpktvenf~th~-------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedefh~~lrhd  486 (558)
T KOG0882|consen  415 DIHIKLYPEECPKTVENFTTHS-------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEFHPNLRHD  486 (558)
T ss_pred             ceEEEecccccchhhhhhhccc-------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhcCcccccC
Confidence            378999999999   5556433       3447999999999999999999996 9999999999999999976 89999


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152           85 HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE  155 (165)
Q Consensus        85 ~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~  155 (165)
                      ++-+|||||.|+|+||||||||..+.||||++|+|||||+.||||+++|+++.+++.++|.+++.|.+.-+
T Consensus       487 rpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv  557 (558)
T KOG0882|consen  487 RPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV  557 (558)
T ss_pred             CCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999988643

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=3.9e-38  Score=241.21  Aligned_cols=136  Identities=27%  Similarity=0.364  Sum_probs=115.9

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK   82 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~   82 (165)
                      ||+||||.+.||      +.||          +.+||+|+.|||++|+|+|||||+....+   ...++.++.+|.....
T Consensus        39 ~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l  105 (190)
T PRK10903         39 NIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGL  105 (190)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccC
Confidence            699999999999      6677          33479999999999999999999864322   1234667888865555


Q ss_pred             CCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcceEEee
Q 031152           83 HSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVTIAD  152 (165)
Q Consensus        83 h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~i~I~~  152 (165)
                      |+.+|+|||++.+ +++++|||||++.++++||+     +|+|||+|++|||||++|++.++++    +++|..+|+|.+
T Consensus       106 ~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  185 (190)
T PRK10903        106 RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS  185 (190)
T ss_pred             cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEE
Confidence            6679999999865 99999999999999999984     8999999999999999999988876    579999999999


Q ss_pred             eeeec
Q 031152          153 SGEIP  157 (165)
Q Consensus       153 cg~l~  157 (165)
                      |++++
T Consensus       186 ~~v~~  190 (190)
T PRK10903        186 AKVLP  190 (190)
T ss_pred             EEEeC
Confidence            99874

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=1.7e-37  Score=232.80  Aligned_cols=135  Identities=26%  Similarity=0.377  Sum_probs=112.6

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK   82 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~   82 (165)
                      +|+|+||.+.||      +.||+          ..||+++.||||+|+|+|||||+..+.+.   ..++..+++|.....
T Consensus        10 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~   76 (164)
T PRK10791         10 DIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGL   76 (164)
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccc
Confidence            799999999999      67773          34799999999999999999997544322   223567777854333


Q ss_pred             CCcceEEEEecCC-CCCCCceEEEEcCCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcceE
Q 031152           83 HSHAGVVSMVNSG-PDSNGSQFFITTVKASWLD-------G-EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVT  149 (165)
Q Consensus        83 h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld-------~-~~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~i~  149 (165)
                      |+.+|+||||+.+ +++++|||||++.++++||       + +|+|||||++|||||++|++.+++.    +++|..+|+
T Consensus        77 ~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~  156 (164)
T PRK10791         77 KNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVI  156 (164)
T ss_pred             cCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeE
Confidence            4479999999875 9999999999999988876       2 7999999999999999999988876    379999999


Q ss_pred             Eeeeeee
Q 031152          150 IADSGEI  156 (165)
Q Consensus       150 I~~cg~l  156 (165)
                      |.+|.+.
T Consensus       157 I~~~~i~  163 (164)
T PRK10791        157 IESVTVS  163 (164)
T ss_pred             EEEEEEe
Confidence            9999764

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=5.9e-37  Score=228.06  Aligned_cols=133  Identities=29%  Similarity=0.348  Sum_probs=112.5

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =+|+|+||.+.||      +.||+          .+||+++.||||+|+|+|||||+....+.   ..++.++++|....
T Consensus         7 G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~   73 (155)
T cd01920           7 GDIVVELYDDKAPITVENFLAYVR----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNG   73 (155)
T ss_pred             eeEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCccccc
Confidence            3899999999999      67773          34799999999999999999998644322   23356777786655


Q ss_pred             cCCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCC----CCCCcceEEe
Q 031152           82 KHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTYS----GKPRKKVTIA  151 (165)
Q Consensus        82 ~h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vFGrVi~G~evl~~I~~~~~~~~----~~P~~~i~I~  151 (165)
                      .|+.+|+||||+.+ +++++|||||++.++|+||.     +|+|||+|++|||||++|++++++..    ++|..+|+|.
T Consensus        74 ~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~  153 (155)
T cd01920          74 LSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIE  153 (155)
T ss_pred             ccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEE
Confidence            56779999999875 89999999999999999995     79999999999999999999998774    6999999998


Q ss_pred             ee
Q 031152          152 DS  153 (165)
Q Consensus       152 ~c  153 (165)
                      ++
T Consensus       154 ~~  155 (155)
T cd01920         154 SA  155 (155)
T ss_pred             EC
Confidence            63

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.2e-35  Score=218.43  Aligned_cols=133  Identities=48%  Similarity=0.756  Sum_probs=117.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =+|+|+||.+.||      +.||+.          .||+++.|||++|+++||+||+......+  +.++..+++|....
T Consensus         7 G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~   74 (146)
T cd00317           7 GRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPL   74 (146)
T ss_pred             CcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccC
Confidence            4799999999999      677742          36999999999999999999986544322  45577889997765


Q ss_pred             c-CCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152           82 K-HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD  152 (165)
Q Consensus        82 ~-h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~  152 (165)
                      . |+.+|+|+|++.++++++|||||++.++++||++|+|||||++||++|++|++.+++++++|..+|+|.+
T Consensus        75 ~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          75 KYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             cCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            5 8889999999999999999999999999999999999999999999999999999999999999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=212.95  Aligned_cols=140  Identities=36%  Similarity=0.505  Sum_probs=128.0

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      -|-||||.+.+|      +.+|          ...||+++.|||-+|+|++|+||++ .+|.|+.|+||..|++|.. -+
T Consensus        11 dikiev~~e~tpktce~~l~~~----------~~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~l   79 (161)
T KOG0884|consen   11 DIKIEVFCERTPKTCENFLALC----------ASDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYL   79 (161)
T ss_pred             cEEEEEEecCChhHHHHHHHHh----------hhhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHH
Confidence            378999999999      4455          2237999999999999999999996 8899999999999999976 78


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCCCcceEEeeeeeecCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS-GKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~  159 (165)
                      +|+.+|.||||++||++|+||||||.+.+|+||-+|+|||+||+|+|+|+.|+..++++. .+|..++.|.+..+-..|
T Consensus        80 kh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp  158 (161)
T KOG0884|consen   80 KHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP  158 (161)
T ss_pred             hhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCc
Confidence            999999999999999999999999999999999999999999999999999999999876 899999999998775544

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-36  Score=222.49  Aligned_cols=141  Identities=52%  Similarity=0.879  Sum_probs=133.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEE---eCCcEEEeeeCCCCCCCCCCcccCCCCCCCC
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRI---VSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN   78 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~ri---i~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~   78 (165)
                      -|++++||.|..|      +.||+|++|.+       |++++|||+   +++|++||||.+..+++++.|+|++.|+||+
T Consensus        18 gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den   90 (167)
T KOG0865|consen   18 GRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN   90 (167)
T ss_pred             cccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence            4689999999999      77999999987       999999993   3479999999999999999999999999999


Q ss_pred             ccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           79 FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        79 ~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      +.++|..+|.||||+.+||+++||||||+....|||++|+|||+|.+||+++++|+ .....++++..+|.|.+||.|
T Consensus        91 FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e-~~gs~~gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen   91 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAME-RFGSRNGKTSKKITIADCGQL  167 (167)
T ss_pred             cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhh-ccCCcCCcccccEEEecCCcC
Confidence            99999999999999999999999999999999999999999999999999999999 588899999999999999975

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=9.9e-35  Score=215.41  Aligned_cols=136  Identities=43%  Similarity=0.648  Sum_probs=115.1

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCC-CcccCCCCCCCCc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS-DSIYGGTFPDENF   79 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~-~s~~g~~~~~e~~   79 (165)
                      .=||+||||++.||      +.||+  .        .+|+++.|||++|+++||+|++......+. ....+..+++|..
T Consensus         9 ~G~i~ieL~~~~aP~~~~nF~~l~~--~--------~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~   78 (155)
T PF00160_consen    9 LGRIVIELFGDEAPKTVENFLRLCT--S--------GFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFN   78 (155)
T ss_dssp             EEEEEEEEETTTSHHHHHHHHHHHH--T--------TSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGB
T ss_pred             ccCEEEEEeCCCCcHHHHhhehhhc--c--------cccCCceeecccccceeeeeeccCCCCcccccccCccccccccc
Confidence            46999999999999      67774  2        259999999999999999999865443111 1223556888874


Q ss_pred             --cccCCcceEEEEecCC--CCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152           80 --KIKHSHAGVVSMVNSG--PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE  155 (165)
Q Consensus        80 --~~~h~~~G~lsm~~~~--~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~  155 (165)
                        .+.| ++|+|+|++.+  +++++|||||+|.+.++||++|+|||+|++||++|++|++..++.  +|.++|+|.+|||
T Consensus        79 ~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv  155 (155)
T PF00160_consen   79 PSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV  155 (155)
T ss_dssp             TTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred             cccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence              4556 79999999975  889999999999999999999999999999999999999877776  9999999999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-34  Score=234.24  Aligned_cols=144  Identities=35%  Similarity=0.487  Sum_probs=133.6

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCC-------CC
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGT-------FP   75 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~-------~~   75 (165)
                      -|||.||.+.+|      ++||          |..||+.+.||.|..+|.+|+|||+ ++|.||.|+|+..       |+
T Consensus        11 DlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffe   79 (479)
T KOG0415|consen   11 DLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFE   79 (479)
T ss_pred             cEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhh
Confidence            379999999999      8899          6778999999999999999999997 6999999998543       56


Q ss_pred             CCCc-cccCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeee
Q 031152           76 DENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVK-ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS  153 (165)
Q Consensus        76 ~e~~-~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~-~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~c  153 (165)
                      .|.. .++|...|+|||++.|.|.+||||||||+. +.+||++|+|||+|.+|||+|.+|+.+.++.+++|+++|+|.+.
T Consensus        80 aE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HT  159 (479)
T KOG0415|consen   80 AEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHT  159 (479)
T ss_pred             hhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeee
Confidence            6654 789999999999999999999999999987 58999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCC
Q 031152          154 GEIPKNKWDE  163 (165)
Q Consensus       154 g~l~~~~~~~  163 (165)
                      -+|.+||.++
T Consensus       160 iiLdDPFddp  169 (479)
T KOG0415|consen  160 IILDDPFDDP  169 (479)
T ss_pred             EEecCCCCCc
Confidence            9999999886

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=9.4e-34  Score=214.67  Aligned_cols=119  Identities=28%  Similarity=0.400  Sum_probs=97.3

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCC-----------------
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDG-----------------   63 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~-----------------   63 (165)
                      .=+|+|+||++.||      +.||          +..||+++.||||+|+|+|||||+.....                 
T Consensus         6 ~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~   75 (176)
T cd01924           6 NGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEI   75 (176)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccccee
Confidence            34899999999999      7788          34479999999999999999999864321                 


Q ss_pred             ---CCCCcccCCCCC-----CCCccccCCcceEEEEecCC--CCCCCceEEEEcC-------CCCCCCCCCcEEEEEEcC
Q 031152           64 ---KGSDSIYGGTFP-----DENFKIKHSHAGVVSMVNSG--PDSNGSQFFITTV-------KASWLDGEHVVFGKVIQG  126 (165)
Q Consensus        64 ---~~~~s~~g~~~~-----~e~~~~~h~~~G~lsm~~~~--~~~~~sqF~Itl~-------~~~~ld~~~~vFGrVi~G  126 (165)
                         ..+.+.|+..+.     +++....|+.+|+||||+.+  +++++|||||+++       ++|+||++|+|||||++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG  155 (176)
T cd01924          76 KPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDG  155 (176)
T ss_pred             cccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecC
Confidence               112244554432     34455677789999999987  6999999999998       799999999999999999


Q ss_pred             HHHHHHHhc
Q 031152          127 MDTVYAIEG  135 (165)
Q Consensus       127 ~evl~~I~~  135 (165)
                      ||||++|+.
T Consensus       156 ~dvl~~I~~  164 (176)
T cd01924         156 LDILRELKV  164 (176)
T ss_pred             HHHHHhhcC
Confidence            999999983

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-33  Score=227.82  Aligned_cols=143  Identities=31%  Similarity=0.469  Sum_probs=132.9

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      -|.||||+..||      ..||.          .+||+|+.|||++|+|++|||||+ ++|+||.|+||.+|.+|.. ++
T Consensus        23 ~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~h~Rl   91 (439)
T KOG0885|consen   23 DIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEFHPRL   91 (439)
T ss_pred             ceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-CCCCCccccccccchhhcCcce
Confidence            378999999999      67883          347999999999999999999995 9999999999999999966 88


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK  160 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~-G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~  160 (165)
                      ++.++|+|+||+.+.+.||||||+||+++|+|+++|++||+|+. -+-.+-+|..+.++.+.||..+-+|.+|.|+-.+|
T Consensus        92 rf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npF  171 (439)
T KOG0885|consen   92 RFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPF  171 (439)
T ss_pred             eeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCch
Confidence            99999999999999999999999999999999999999999995 77888899989999999999999999999999887


Q ss_pred             CC
Q 031152          161 WD  162 (165)
Q Consensus       161 ~~  162 (165)
                      .|
T Consensus       172 dD  173 (439)
T KOG0885|consen  172 DD  173 (439)
T ss_pred             hh
Confidence            66

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00011  Score=62.46  Aligned_cols=143  Identities=18%  Similarity=0.141  Sum_probs=103.1

Q ss_pred             EEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCccc--CC---CCCC--CCccc
Q 031152            9 LKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIY--GG---TFPD--ENFKI   81 (165)
Q Consensus         9 rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~--g~---~~~~--e~~~~   81 (165)
                      -|.++|+.+-.|...- +   .+..-...|+++..|.+|...+++|.||.......+|.--|  +.   .+++  .+..+
T Consensus       113 ~IAVs~~~sg~i~VvD-~---~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~  188 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVD-G---FGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL  188 (558)
T ss_pred             eEEeecccCCCcEEEC-C---cCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence            5677777777771111 0   00111455799999999999999999987544333332111  11   1222  24467


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      +|. .-++..........+-+|++.-...+.+..+..|||++..|-++++.|.+..++....|..++.|.+....
T Consensus       189 K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg  262 (558)
T KOG0882|consen  189 KHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG  262 (558)
T ss_pred             ccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh
Confidence            775 66666666666667889999999999999999999999999999999999999999999999999887653

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=93.04  E-value=1  Score=39.32  Aligned_cols=116  Identities=19%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             eeEEEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccccCCc
Q 031152            6 QKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH   85 (165)
Q Consensus         6 ~~~rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~h~~   85 (165)
                      +..-|.|+||.|.||+.+-...+-.+...+.  -=-..+|-..++.++-=|+.          .+...+.+||.+-.-..
T Consensus       373 ~~~vi~IeLydd~AP~s~~yFRk~tGL~~~~--VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~~V~  440 (503)
T TIGR03268       373 KDKVIEIELYDDNAPRSVWYFRKFTGLKTKP--VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPEDKVE  440 (503)
T ss_pred             hHhEEEEEEcccCCchHHHHHHHhcCCcccc--cceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCCccc
Confidence            3445899999999993322111111100000  01235556667754443322          22445666766555666


Q ss_pred             ceEEEEecCCCCCCCceEEEEc------CCC-CCCCCCCcEEEEEEcCHHHHHHHhc
Q 031152           86 AGVVSMVNSGPDSNGSQFFITT------VKA-SWLDGEHVVFGKVIQGMDTVYAIEG  135 (165)
Q Consensus        86 ~G~lsm~~~~~~~~~sqF~Itl------~~~-~~ld~~~~vFGrVi~G~evl~~I~~  135 (165)
                      +|.++|-|......| -.=|-+      +|. ..+++.+ ++|+|++++|.|.++.+
T Consensus       441 ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       441 AGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE  495 (503)
T ss_pred             cceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence            888888765322111 111222      232 2355545 55999999999998874

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=90.16  E-value=0.52  Score=41.07  Aligned_cols=57  Identities=25%  Similarity=0.408  Sum_probs=39.2

Q ss_pred             CCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152           73 TFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE  134 (165)
Q Consensus        73 ~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~  134 (165)
                      ..+.|+..  .-.+|+|.+.+.|.+  ....||--.+-+ ..-.|+|+|+|+.|||+++--+
T Consensus       246 ~~p~En~~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~  302 (503)
T TIGR03268       246 DKPEENIE--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ  302 (503)
T ss_pred             cCCccccC--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence            34444433  234999999998754  245777765544 2346999999999999987554

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=89.88  E-value=3.3  Score=36.35  Aligned_cols=115  Identities=18%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             eeEEEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccccCCc
Q 031152            6 QKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH   85 (165)
Q Consensus         6 ~~~rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~h~~   85 (165)
                      +..-|.|+||.|.||+.+-...+-.+...+.  -=-.++|-..++.++-=|+.          .+...+.+||.+-.-..
T Consensus       376 ~~~vi~IeLydd~AP~s~~yFR~~tGL~~~~--VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~~~V~  443 (508)
T PRK00969        376 KDKLIEIELYDDKAPRTVWYFRKVTGLKTKP--VGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPEDKVK  443 (508)
T ss_pred             HHHEEEEEEcCcCCchHHHHHHHhcCCcccc--cceeEEEEEeCCeEEEccCh----------hhccccCCCCCCCCccc
Confidence            3445899999999993322111111100000  00235666677765553332          22445667777666667


Q ss_pred             ceEEEEecCCCCCCCceEEEEc------CCC-CCCCCCCcEEEEEEcCHHHHHHHhc
Q 031152           86 AGVVSMVNSGPDSNGSQFFITT------VKA-SWLDGEHVVFGKVIQGMDTVYAIEG  135 (165)
Q Consensus        86 ~G~lsm~~~~~~~~~sqF~Itl------~~~-~~ld~~~~vFGrVi~G~evl~~I~~  135 (165)
                      +|.+++-|......| -.=|-+      +|. ..+++.+ ++|+|+ ++|-|.++.+
T Consensus       444 ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTN-IIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        444 AGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTN-IIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             cceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCce-eEEEec-ChHHhccccc
Confidence            888888765322111 111222      332 2345544 569999 9999998874

>PRK00969 hypothetical protein; Provisional

Probab=89.70  E-value=0.54  Score=41.06  Aligned_cols=59  Identities=24%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             CCCCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152           71 GGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE  134 (165)
Q Consensus        71 g~~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~  134 (165)
                      |...+.|+..  .-.+|+|++.+.|.+  ....||--.+-+ ..-.|+|+|+|+.|||+++--+
T Consensus       247 g~~~p~En~~--~R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~  305 (508)
T PRK00969        247 GLKIPEENFE--PRRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK  305 (508)
T ss_pred             CccCCccccC--ccccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence            3334444433  234999999998754  345777765544 2346999999999999987554

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=89.69  E-value=0.46  Score=35.00  Aligned_cols=101  Identities=20%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             eeEEEEEEEcCCccc-------cceeeeccCCCCCCCCcccCCCeEEEEeCC--cEEEeeeCCCCCCCCCCcccCCCCCC
Q 031152            6 QKLLKISGLYAQYIW-------YFPIIGEKGTGASGKPLHFKGKPFHRIVSG--FVIQGGDIVRGDGKGSDSIYGGTFPD   76 (165)
Q Consensus         6 ~~~rivieL~~d~aP-------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~--~~iq~Gd~~~~~~~~~~s~~g~~~~~   76 (165)
                      +...++.+|..|.||       ..|-              |.+..+|-...+  .++.-++..           ....+.
T Consensus         6 ~g~~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~   60 (147)
T PF12903_consen    6 RGVSFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFD-----------PFEPGR   60 (147)
T ss_dssp             TTEEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S
T ss_pred             CCeEEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcC-----------cCCCCC
Confidence            456789999999999       2332              556666666555  355555542           112344


Q ss_pred             CCccccCCcceEEEEec---CCCC--CC-CceEEEEcCCC--------CCCCCCCcEEEEEEcCHHHHHHHh
Q 031152           77 ENFKIKHSHAGVVSMVN---SGPD--SN-GSQFFITTVKA--------SWLDGEHVVFGKVIQGMDTVYAIE  134 (165)
Q Consensus        77 e~~~~~h~~~G~lsm~~---~~~~--~~-~sqF~Itl~~~--------~~ld~~~~vFGrVi~G~evl~~I~  134 (165)
                      ||..... .+|-|.+.=   ...+  .. -++.-|..+..        -++-+  .+|++|++|+|-|.++-
T Consensus        61 EN~T~~P-~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~  129 (147)
T PF12903_consen   61 ENHTVTP-IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEAC  129 (147)
T ss_dssp             -SEESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHH
T ss_pred             CcCcccC-CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHH
Confidence            5554333 478877761   1111  11 13333333332        22333  56999999999988775

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=88.87  E-value=1.3  Score=37.82  Aligned_cols=19  Identities=16%  Similarity=0.553  Sum_probs=16.3

Q ss_pred             CcEEEEEEcCHHHHHHHhc
Q 031152          117 HVVFGKVIQGMDTVYAIEG  135 (165)
Q Consensus       117 ~~vFGrVi~G~evl~~I~~  135 (165)
                      .-++|+|++|.+-|..|.+
T Consensus       480 TNiIGrIveg~e~l~~ike  498 (512)
T COG4070         480 TNIIGRIVEGPERLIGIKE  498 (512)
T ss_pred             ceeehhhccChHHhccccc
Confidence            4577999999999999984

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=81.91  E-value=1  Score=38.34  Aligned_cols=59  Identities=25%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152           71 GGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE  134 (165)
Q Consensus        71 g~~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~  134 (165)
                      ...++.|+..++  .+|.+++.+.|-+  ...-||--.+-+. .-.|.|.|||++|||+++--.
T Consensus       246 ~~~~~~en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~  304 (512)
T COG4070         246 EEKVPEENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE  304 (512)
T ss_pred             cccCChhhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence            334555555444  4899999987644  3456776644332 236999999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
1dyw_A	173	Biochemical And Structural Characterization Of A Di		7e-44
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-38
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		5e-38
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		3e-36
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-36
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		6e-36
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		7e-36
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-35
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		1e-34
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-34
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		2e-34
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-34
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-34
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-34
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-34
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-34
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-34
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-34
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-34
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-34
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		4e-34
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		5e-34
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		6e-34
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		7e-34
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		8e-34
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		1e-33
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-33
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		1e-33
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-33
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-33
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		1e-33
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		2e-33
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		2e-33
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-33
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		3e-33
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		3e-33
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		4e-33
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-33
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		5e-33
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		6e-33
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		6e-33
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		4e-32
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		7e-32
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		7e-32
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		9e-32
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-31
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-31
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		7e-31
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		6e-30
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		2e-29
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-29
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-28
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		5e-27
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		5e-27
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		8e-22
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		2e-21
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		2e-21
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		2e-21
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-20
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-20
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		4e-20
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		7e-19
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		8e-19
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		4e-16
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		8e-15
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		4e-11
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		8e-10
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		3e-07
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		2e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		2e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		7e-06
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		1e-05
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		1e-05
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		9e-05

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  172 bits (436), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GE G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH
Sbjct: 40  CTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKH 99
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGK
Sbjct: 100 TGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGK 158
Query: 144 PRKKVTIADSGEI 156
           P K   IAD G++
Sbjct: 159 PVKDCMIADCGQL 171

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G SGKPL + G  FHRI+  F+IQGGD  RGDG G +SIYG  F DENF   H
Sbjct: 56  CTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTH 115
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
               ++SM N+GP++NGSQFFITTV   WLDG+HVVFGKV++GM+ V +IE   G+ +GK
Sbjct: 116 DAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIE-KCGSQNGK 174
Query: 144 PRKKVTIADSG 154
           P K V I  SG
Sbjct: 175 PTKSVCITASG 185

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  153 bits (386), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 4/140 (2%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK- 82
             GEKG G SGKPLH+K   FHR++  F+IQGGD  RG+G G +SIYG TF DE+F  K 
Sbjct: 44  CTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKA 103
Query: 83  --HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY 140
             H+  G +SM N+GP++NGSQFFI T    WLDG+HVVFG+VI G+D V  +E   G+ 
Sbjct: 104 GRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVE-RLGSS 162
Query: 141 SGKPRKKVTIADSGEIPKNK 160
           SGK R ++ ++D GE+  +K
Sbjct: 163 SGKTRSRIVVSDCGEVAADK 182

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 7/135 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +K   FHR++  F+IQGGD  RGDG G  SIYG  FPDENFK+KH  
Sbjct: 51  GEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 103
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V  +E        KP 
Sbjct: 104 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163
Query: 146 KKVTIADSGEIPKNK 160
           K VTIAD G+I   K
Sbjct: 164 KDVTIADCGKIEVEK 178

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  147 bits (370), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 7/135 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +K   FHR++  F+IQGGD  RGDG G  SIYG  FPDENFK+KH  
Sbjct: 51  GEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 103
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V  +E        KP 
Sbjct: 104 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163
Query: 146 KKVTIADSGEIPKNK 160
           K VTIAD G+I   K
Sbjct: 164 KDVTIADCGKIEVEK 178

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 90/135 (66%), Gaps = 7/135 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +K   FHR++  F+IQGGD  RGDG G  SIYG  FPDENFK+KH  
Sbjct: 44  GEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 96
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V  +E        KP 
Sbjct: 97  PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL 156
Query: 146 KKVTIADSGEIPKNK 160
           K V IAD G+I   K
Sbjct: 157 KDVIIADCGKIEVEK 171

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  146 bits (368), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 90/135 (66%), Gaps = 7/135 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +K   FHR++  F+IQGGD  RGDG G  SIYG  FPDENFK+KH  
Sbjct: 54  GEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 106
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V  +E        KP 
Sbjct: 107 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL 166
Query: 146 KKVTIADSGEIPKNK 160
           K V IAD G+I   K
Sbjct: 167 KDVIIADCGKIEVEK 181

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEK  G+ GK LH+K   FHRI+  F+ QGGDI  G+G G +SIYG +F DENF +KH  
Sbjct: 42  GEK-IGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQ 100
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++N SQFFIT V   WLDG+HVVFGKVI+GM+ V  +E   G  SG  +
Sbjct: 101 PGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVK 159
Query: 146 KKVTIADSGEI 156
           + V I D GE+
Sbjct: 160 RSVVITDCGEL 170

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 90/131 (68%), Gaps = 7/131 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHR++  F+IQGGDI  GDG G  SIYG TFPDENFK+KH  
Sbjct: 54  GEKGYG-------YKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYG 106
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+GPD+NGSQFFIT  K +WLDG+HVVFGKVI GM  V++IE  A     +P 
Sbjct: 107 IGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPL 166
Query: 146 KKVTIADSGEI 156
              +I +SG+I
Sbjct: 167 TNCSIINSGKI 177

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 61  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 113
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 114 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 172
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 173 KKITIADCGQL 183

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEK  G+ GK LH+K   FHRI+  F+ QGGDI  G+G G +SIYG +F DENF +KH  
Sbjct: 42  GEK-IGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQ 100
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++N SQF IT V   WLDG+HVVFGKVI+GM+ V  +E   G  SG  +
Sbjct: 101 PGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVK 159
Query: 146 KKVTIADSGE 155
           + V I D GE
Sbjct: 160 RSVVITDCGE 169

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 41  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 94  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       + G  FHR++  F++QGGD   G+G G  SIYG  F DENF++KH
Sbjct: 38  CTGEKGFG-------YAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKH 90
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
           +  G++SM N+GP++NGSQFFITTV  SWLDG+HVVFG+VI GM+ V AIE   G+ SGK
Sbjct: 91  NKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGK 149
Query: 144 PRKKVTIADSG 154
           PR ++ IA  G
Sbjct: 150 PRSRIEIAKCG 160

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 50  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 102
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 103 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 161
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 162 KKITIADCGQL 172

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G+++M N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 46  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 98
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 99  PGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 157
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 158 KKITIADCGQL 168

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  139 bits (351), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FH+I+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  139 bits (351), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 83/118 (70%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           + G  FHR+++ F+IQGGD  RGDG G  SIYG  F DENFK+KH  AG +SM N+G D+
Sbjct: 51  YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADT 110
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           NGSQFFITTVK  WLDG HVVFGK+++GMD V  IE        +P++ V IA SG I
Sbjct: 111 NGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  139 bits (350), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 24  IIGEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
             GEKG G  +GKPLHFKG PFHRI+  F+IQGGD    +G G +SIYG  F DENF  K
Sbjct: 52  CTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111
Query: 83  HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
           H   G++SM N+G ++NGSQFFITTV    LDG+HVVFG+VI+GM     +E        
Sbjct: 112 HDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILE-NVEVKGE 170
Query: 143 KPRKKVTIADSGEI 156
           KP K   IA+ GE+
Sbjct: 171 KPAKLCVIAECGEL 184

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  139 bits (350), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 41  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFG V +GM+ V A+E   G+ +GK  
Sbjct: 94  PGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAME-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH
Sbjct: 40  CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 92
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              GV+SM N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+
Sbjct: 93  VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 151
Query: 144 PRKKVTIADSGEI 156
             KK+ I D G++
Sbjct: 152 TSKKIVITDCGQL 164

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH
Sbjct: 41  CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 93
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              GV+SM N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+
Sbjct: 94  VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 152
Query: 144 PRKKVTIADSGEI 156
             KK+ I D G++
Sbjct: 153 TSKKIVITDCGQL 165

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 20  WYFPIIGEKGTGA-SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN 78
           +     G  GTG  SGKPLH+KG  FHR++  F+IQGGD  +GDG G +SIYGG F DE 
Sbjct: 39  FLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEE 98
Query: 79  FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAG 138
           F +KH    VVSM N GP++NGSQFFITT  A  L+  HVVFGKV+ G + V  IE    
Sbjct: 99  FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT 158
Query: 139 TYSGKPRKKVTIADSGEI 156
               +P   V I + GE+
Sbjct: 159 NSKNRPLADVVILNCGEL 176

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH
Sbjct: 40  CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 92
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              GV+SM N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+
Sbjct: 93  VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 151
Query: 144 PRKKVTIADSGEI 156
             KK+ I D G++
Sbjct: 152 TSKKIVITDCGQL 164

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       + G PFHR++  F++QGGD   G+G G  SIYGG FPDENFK  H
Sbjct: 38  CTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHH 90
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              G++SM N+GP++NGSQFFITTV   WLDG+HVVFG+V+ G D V  +E   G+ SG 
Sbjct: 91  DRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVE-SLGSPSGA 149
Query: 144 PRKKVTIADSGEI 156
            + ++ +A SGE+
Sbjct: 150 TKARIVVAKSGEL 162

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GEKG G       +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH
Sbjct: 39  CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 91
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              GV+SM N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+
Sbjct: 92  VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 150
Query: 144 PRKKVTIADSGEI 156
             KK+ I D G++
Sbjct: 151 TSKKIVITDCGQL 163

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGG+    +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 88/131 (67%), Gaps = 7/131 (5%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHR++  F+IQGGD    DG G  SIYG TFPDENFK+KH  
Sbjct: 46  GEKGYG-------YKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYG 98
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+GPD+NGSQFFIT  K +WLDG+HVVFGKV+ GM  V++IE  A     +P 
Sbjct: 99  IGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPL 158
Query: 146 KKVTIADSGEI 156
              TI +SG+I
Sbjct: 159 TDCTIVNSGKI 169

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 83/123 (67%)
Query: 34  GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVN 93
           G P+ +KG  FHR++  F+IQGGD V GDG G  SIY G F DENFK++HS  G++SM N
Sbjct: 55  GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMAN 114
Query: 94  SGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153
           SGP +NG QFFIT  K  WLDG+HVVFGK+I G+  +  IE      + KP+  V I+  
Sbjct: 115 SGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQC 174
Query: 154 GEI 156
           GE+
Sbjct: 175 GEM 177

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 24  IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
             GEKGTG S  KPLH+K   FHR+V  F++QGGD   G+G+G +SIYGG F DE+F +K
Sbjct: 63  CTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 122
Query: 83  HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
           H+ A ++SM N G D+NGSQFFITT     LDG HVVFG+VI G + V  IE      + 
Sbjct: 123 HNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 182
Query: 143 KPRKKVTIADSGEI 156
           KP  +V I   GE+
Sbjct: 183 KPFAEVRILSCGEL 196

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGG+    +G G  SIYG  F DENF +KH+ 
Sbjct: 42  GEKGFG-------YKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 95  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD    +G G  SIYG  F DENF +KH+ 
Sbjct: 41  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A++   G+ +GK  
Sbjct: 94  PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMK-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           FKG  FHRI+  F+ QGGD    +G G  SIYG  F DENF +KH+  G++SM NSGP++
Sbjct: 48  FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNT 107
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
           NGSQFF+T  K  WLDG+HVVFG+V +G+D +  IE   G+  GKP++KV IAD GE
Sbjct: 108 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 163

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           FKG  FHRI+  F+ QGGD    +G G  SIYG  F DENF +KH+  G++SM NSGP++
Sbjct: 56  FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNT 115
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
           NGSQFF+T  K  WLDG+HVVFG+V +G+D +  IE   G+  GKP++KV IAD GE
Sbjct: 116 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 171

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 24  IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
             GEKGTG S  KPLH+K   FHR+V  F++QGGD   G+G+G +SIYGG F DE+F +K
Sbjct: 46  CTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
Query: 83  HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
           H+   ++SM N G D+NGSQFFITT     LDG HVVFG+VI G + V  IE      + 
Sbjct: 106 HNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 165
Query: 143 KPRKKVTIADSGEI 156
           KP  +V I   GE+
Sbjct: 166 KPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 24  IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
             GEKGTG S  KPLH+K   FHR+V  F++QGGD   G+G+G +SIYGG F DE+F +K
Sbjct: 46  CTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
Query: 83  HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
           H+   ++SM N G D+NGSQFFITT     LDG HVVFG+VI G + V  IE      + 
Sbjct: 106 HNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 165
Query: 143 KPRKKVTIADSGEI 156
           KP  +V I   GE+
Sbjct: 166 KPFAEVRILSCGEL 179

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 88/131 (67%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF  QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 41  GEKGFG-------YKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++S  N+GP++NGSQFFI T K  WLDG+HVVFGKV +G + V A E   G+ +GK  
Sbjct: 94  PGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXE-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           FKG  FHRI+  F  QGGD    +G G  SIYG  F DENF +KH+  G++S  NSGP++
Sbjct: 57  FKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNT 116
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
           NGSQFF+T  K  WLDG+HVVFG+V +G+D +  IE   G+  GKP++KV IAD GE
Sbjct: 117 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 172

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 3/130 (2%)
Query: 27  EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
           E  TG  G    +K   FHR++  F++QGGD  R +G G  SIYG  F DENF++KH+  
Sbjct: 37  ELATGQHG--FGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 94
Query: 87  GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 146
           G++SM N+G ++NGSQFFITTV  SWLDG+HVVFG+VI+G+D V  +E G G+ SGK   
Sbjct: 95  GLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNA 153
Query: 147 KVTIADSGEI 156
            + I D G +
Sbjct: 154 TIKITDCGTV 163

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  132 bits (332), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 3/130 (2%)
Query: 27  EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
           E  TG  G    +K   FHR++  F++QGGD  R +G G  SIYG  F DENF++KH+  
Sbjct: 38  ELATGQHG--FGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 95
Query: 87  GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 146
           G++SM N+G ++NGSQFFITTV  SWLDG+HVVFG+VI+G+D V  +E G G+ SGK   
Sbjct: 96  GLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNA 154
Query: 147 KVTIADSGEI 156
            + I D G +
Sbjct: 155 TIKITDCGTV 164

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           +KG  FHR++  F+IQGGD    DG G  SIYG  F DEN KIKH   G VSM N+GP+S
Sbjct: 50  YKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNS 108
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           NGSQFF+TT    WLDG HVVFGKV++GMD V  +E      + KP+K V I D G +
Sbjct: 109 NGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24  IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
             GE+G G       +    FHR++  F+ QGGD V+GDG G  SIYG  F DENF+++H
Sbjct: 47  CTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRH 99
Query: 84  SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
              GV+SM NSGP++NGSQFFI T K  WLDG+HVVFG+V+ G + V  +E   G+ SGK
Sbjct: 100 EGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME-SVGSKSGK 158
Query: 144 PRKKVTIADSGEI 156
            ++ V I+  GE+
Sbjct: 159 VKEPVIISRCGEL 171

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  129 bits (324), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 26  GEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           GEKG G  +GK L +KG  FHR+V  F+IQGGD   G+GKG +SIYGG F DENF +KH 
Sbjct: 58  GEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHD 117
Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
            A ++SM N G  +NGSQFFITT  A  LDG HVVFG VI G + +  IE      + +P
Sbjct: 118 RAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRP 177
Query: 145 RKKVTIADSG 154
              V + D G
Sbjct: 178 YADVRVIDCG 187

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           +KG  FHRI+ GF++QGGD    +G G  SIYG  FPDENF++KH+  G++SM N G  +
Sbjct: 72  YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHT 131
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK--KVTIADSGEI 156
           NGSQFFIT  K  WLD +HVVFG+V++GMD V+ I    G+ SG+ +K  ++ I D G +
Sbjct: 132 NGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI-AKYGSESGQVKKGYRIEIRDCGVL 190
Query: 157 PKN 159
             N
Sbjct: 191 GSN 193

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           +K   FHR++  F+IQGGD    DG G  SIYG  F DEN  +KH   G +SM N+GP++
Sbjct: 56  YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNT 114
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           NGSQFFITT    WLDG HVVFGKV+ GMD V  IE        +P K V I  SGE+
Sbjct: 115 NGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           +K   FHR++  F+IQGGD    DG G  SIYG  F DEN  +KH   G +SM N+GP++
Sbjct: 56  YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNT 114
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           NGSQFFITT    WLDG HVVFGKV+ GMD V  IE        +P K V I  SGE+
Sbjct: 115 NGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 32  ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSM 91
            +  P+ +K   FHR++  F+IQGGD +  +G GS SIYG  F DENF IKH   G++SM
Sbjct: 102 VNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSM 161
Query: 92  VNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQG--MDTVYAIEGGAGT-YSGKPRKKV 148
            NSGP++NG QFFITT K  WLDG++VVFG++I    +  +  IE  + T Y  KP+  +
Sbjct: 162 ANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI 221
Query: 149 TIADSGEI 156
            + + GE+
Sbjct: 222 NVVECGEL 229

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 81/131 (61%), Gaps = 8/131 (6%)
Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       FK   FHR++  FV QGGDI + DG G  SIYG  F DENF +KH+ 
Sbjct: 45  GEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTG 97
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N G ++N SQF IT  KA  LD +HVVFG V  GMDTV  IE   G+  G   
Sbjct: 98  PGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIE-SFGSPKGSVC 156
Query: 146 KKVTIADSGEI 156
           +++TI + G+I
Sbjct: 157 RRITITECGQI 167

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
           ++   FHRI+  F+IQGGD  RG+G G  SIYG  F DENF  KH   G++SM N+GP++
Sbjct: 52  YRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNT 111
Query: 99  NGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEG-GAGTYSGKPRKKVTIADSGE 155
           NGSQFFITT   SWLDG+HVVFG+V   +    V  IE  G+ + S +   +  I + GE
Sbjct: 112 NGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE 171
Query: 156 I 156
           +
Sbjct: 172 L 172

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGPDSNGSQ 102
           FHR++  F++Q GD   GDG G +SI+G  F DE F  + HS   +VSM N GP++NGSQ
Sbjct: 47  FHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQ 105
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           FFITTV   WLD +H VFGKV QG   V  IE        KP + + I +
Sbjct: 106 FFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
           D+NGSQFF+T     WLDG+H +FG+V QG+  V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
           D+NGSQFF+T     WLDG+H +FG+V QG+  V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
           D+NGSQFF+T     WLDG+H +FG+V QG+  V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+ GF+IQ GD   G G G +SI+GG F DE +  ++H     +SM N+G 
Sbjct: 57  YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGS 115
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTIAD 152
           ++NGSQFFIT V   WLD +H VFG+V +GM+ V  I        + KP + V+I +
Sbjct: 116 NTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQ 102
           FHR++  FVIQGGD   G GKG  SIYG  F DE N ++KH+ AG++SM N+GP++N SQ
Sbjct: 80  FHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 138
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
           FFIT      LDG+H +F +V + M  +  I     T + KP
Sbjct: 139 FFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP 180

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSG- 95
           ++K   FH+ + GF+IQGGD   G GKG +SIYG  F DE + ++K+   G++SM + G 
Sbjct: 52  YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGA 110
Query: 96  ---PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
              P++NGSQFFIT      L+GE+V+FGK+I G +T+  +E      S KP  ++ I D
Sbjct: 111 SKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 7/119 (5%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGP 96
           ++ G  FHR + GF++Q GD   G G+G +SI+G  F DE  + +KH+  GVVSM N+GP
Sbjct: 36  YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGP 94
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG---GAGTYSGKPRKKVTIAD 152
           ++NGSQFFIT  K   LD ++ VFGKVI G++T+  +E       TY  +P   V I D
Sbjct: 95  NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKD 151

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 7/119 (5%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGP 96
           ++ G  FHR + GF++Q GD   G G+G +SI+G  F DE  + +KH+  GVVSM N+GP
Sbjct: 42  YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGP 100
Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG---GAGTYSGKPRKKVTIAD 152
           ++NGSQFFIT  K   LD ++ VFGKVI G++T+  +E       TY  +P   V I D
Sbjct: 101 NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKD 157

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQ 102
           FHR+V GF++QGGD   G G G +SIYG  F DE + +++ +  G+V+M N+G   NGSQ
Sbjct: 66  FHRVVPGFIVQGGDPT-GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQ 124
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAI 133
           FF T  +A  L+ +H +FGKV    DTVY +
Sbjct: 125 FFFTLGRADELNNKHTIFGKVTG--DTVYNM 153

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAG--VVSMVNSG 95
           ++ G  FHR +  FVIQGGD     G G +S +G  F DE F+   SH G  ++SM NSG
Sbjct: 55  YYDGTIFHRSIRNFVIQGGDPTGT-GTGGESYWGKPFKDE-FRPNLSHTGRGILSMANSG 112
Query: 96  PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTI 150
           P+SN SQFFIT    ++LD +H +FG+V+ G D + A+E   +   + +P++++ I
Sbjct: 113 PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 32  ASGKPL--HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTF-PDENFKIKHSHAGV 88
           ASG P    + G  FHR++ GF+IQGGD       G    +   F P+  F   +    +
Sbjct: 66  ASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPELQFDKPY----L 121
Query: 89  VSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYSGKPRK 146
           ++M N+GP +NGSQFFIT  K   L+  H +FG+VI  +    V AI   A   + +P  
Sbjct: 122 LAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTD 181
Query: 147 KVTI 150
            V I
Sbjct: 182 PVVI 185

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 38  HFKGKPFHRIVSGFVIQGGDI-VRGDGKGSD------SIYG----GTFPDE-NFKIKHSH 85
           +F    FHR +  F+IQGG   +R   K  +      SI G      F DE + ++ H  
Sbjct: 42  YFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQG 101
Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
            GV+SM N G  SN S+FFIT      L+ +H +FG+V+ G+D +
Sbjct: 102 IGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVL 146

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 18/97 (18%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKG-SDSIYGGTFPD--ENFKIKHSHAGVVSMVNSGPDS-- 98
           FHR+V  F++QGGD   G G+G +D+ + G   D   + ++K  + G+V + N G  S  
Sbjct: 63  FHRVVKDFIVQGGDPT-GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKD 121
Query: 99  ------------NGSQFFITTVKASWLDGEHVVFGKV 123
                       NG+QFFIT  +A  L+  + +FGKV
Sbjct: 122 AENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PD 97
           +    FHR++ GF+IQGG       +   +       D   +   +  G ++M  +   D
Sbjct: 41  YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 98  SNGSQFFITTVKASWLD-GE----HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKV 148
           S  SQFFI     ++LD G+    + VFGKV++GMD    I        G Y   P K V
Sbjct: 98  SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 149 TIADSGEIP 157
            I  +  +P
Sbjct: 158 VILSAKVLP 166

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PD 97
           +    FHR++ GF+IQGG       +   +       D   +   +  G ++M  +   D
Sbjct: 41  YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 98  SNGSQFFITTVKASWLD-GE----HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKV 148
           S  SQFFI     ++LD G+    + VFGKV++GMD    I        G Y   P K V
Sbjct: 98  SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 149 TIADSGEIP 157
            I  +  +P
Sbjct: 158 VILSATVLP 166

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRG-DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGP 96
           H+ G  FHR+++GF+IQGG    G   K +D+       + N  +K+    +     + P
Sbjct: 39  HYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIAN---EANNGLKNDTYTIAMARTNDP 95
Query: 97  DSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIE----GGAGTYSGKP 144
            S  +QFFI      +L+          + VFGKV++G D V  I+    G  G +   P
Sbjct: 96  HSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVP 155
Query: 145 RKKVTI 150
              V I
Sbjct: 156 NDDVVI 161

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 103
           FHR+++GF+IQGG      G    +       + N  +K++   +       P S  +QF
Sbjct: 41  FHRVINGFMIQGGGF--EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQF 98
Query: 104 FITTVKASWLD--GE------HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 150
           FI  V   +L+  GE      + VF +V+ GMD V  I+G A    G +   P++ V I
Sbjct: 99  FINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 44  FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 103
           FHR+++GF+IQGG      G    +       + N  +K++   +       P S  +QF
Sbjct: 41  FHRVINGFMIQGGGF--EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQF 98
Query: 104 FITTVKASWLD--GE------HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 150
           FI  V   +L+  GE      + VF +V+ GMD V  I+G A    G +   P++ V I
Sbjct: 99  FINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
           H+ G  FHR++ GF+IQGG      G    S       + N  + +    +       P 
Sbjct: 35  HYDGTIFHRVIDGFMIQGGGF--EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPH 92
Query: 98  SNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIEGGA 137
           S  +QFFI     ++LD          + VFG+V++G D V  I+  A
Sbjct: 93  SASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVA 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	3e-81
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	3e-79
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	4e-79
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	2e-78
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-78
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-77
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	4e-77
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	5e-73
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-71
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-71
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	5e-71
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-70
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	2e-70
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	2e-70
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	3e-70
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	3e-70
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	4e-68
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	9e-66
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	6e-50
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	9e-50
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	3e-49
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	1e-48
2b71_A	196	Cyclophilin-like protein; structural genomics, str	1e-48
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	1e-46
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	5e-46
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	2e-45
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	4e-45
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-44
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	6e-39
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	5e-38
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	1e-28
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-28
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	2e-27
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	1e-25

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  236 bits (605), Expect = 3e-81
 Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 1/132 (0%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GE G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+ 
Sbjct: 42  GENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG 101

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGKP 
Sbjct: 102 PGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPV 160

Query: 146 KKVTIADSGEIP 157
           K   IAD G++ 
Sbjct: 161 KDCMIADCGQLK 172

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  231 bits (592), Expect = 3e-79
 Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 2/131 (1%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GE      G P+ +KG  FHR++  F+IQGGD V GDG G  SIY G F DENFK++HS 
Sbjct: 49  GEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSA 106

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM NSGP +NG QFFIT  K  WLDG+HVVFGK+I G+  +  IE      + KP+
Sbjct: 107 PGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPK 166

Query: 146 KKVTIADSGEI 156
             V I+  GE+
Sbjct: 167 LPVVISQCGEM 177

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  231 bits (591), Expect = 4e-79
 Identities = 70/132 (53%), Positives = 85/132 (64%), Gaps = 1/132 (0%)

Query: 26  GEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           G  GTG  SGKPLH+KG  FHR++  F+IQGGD  +GDG G +SIYGG F DE F +KH 
Sbjct: 45  GMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHD 104

Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
              VVSM N GP++NGSQFFITT  A  L+  HVVFGKV+ G + V  IE        +P
Sbjct: 105 EPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP 164

Query: 145 RKKVTIADSGEI 156
              V I + GE+
Sbjct: 165 LADVVILNCGEL 176

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  230 bits (588), Expect = 2e-78
 Identities = 68/134 (50%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 26  GEKGTGAS-GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           GEKG G + GK L +KG  FHR+V  F+IQGGD   G+GKG +SIYGG F DENF +KH 
Sbjct: 58  GEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHD 117

Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
            A ++SM N G  +NGSQFFITT  A  LDG HVVFG VI G + +  IE      + +P
Sbjct: 118 RAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRP 177

Query: 145 RKKVTIADSGEIPK 158
              V + D G +  
Sbjct: 178 YADVRVIDCGVLAT 191

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  229 bits (587), Expect = 3e-78
 Identities = 76/129 (58%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G SGKPL + G  FHRI+  F+IQGGD  RGDG G +SIYG  F DENF   H  
Sbjct: 58  GEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDA 117

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
             ++SM N+GP++NGSQFFITTV   WLDG+HVVFGKV++GM+ V +IE   G+ +GKP 
Sbjct: 118 PFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIE-KCGSQNGKPT 176

Query: 146 KKVTIADSG 154
           K V I  SG
Sbjct: 177 KSVCITASG 185

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  227 bits (581), Expect = 1e-77
 Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 2/131 (1%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEK  G+ GK LH+K   FHRI+  F+ QGGDI  G+G G +SIYG +F DENF +KH  
Sbjct: 42  GEKI-GSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQ 100

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++N SQFFIT V   WLDG+HVVFGKVI+GM+ V  +E   G  SG  +
Sbjct: 101 PGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVK 159

Query: 146 KKVTIADSGEI 156
           + V I D GE+
Sbjct: 160 RSVVITDCGEL 170

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  234 bits (598), Expect = 2e-77
 Identities = 72/136 (52%), Positives = 89/136 (65%), Gaps = 2/136 (1%)

Query: 26  GEKGTGA-SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           GEKG G  +GKPLHFKG PFHRI+  F+IQGGD    +G G +SIYG  F DENF  KH 
Sbjct: 54  GEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHD 113

Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
             G++SM N+G ++NGSQFFITTV    LDG+HVVFG+VI+GM     +E        KP
Sbjct: 114 KEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILE-NVEVKGEKP 172

Query: 145 RKKVTIADSGEIPKNK 160
            K   IA+ GE+ +  
Sbjct: 173 AKLCVIAECGELKEGD 188

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  226 bits (579), Expect = 4e-77
 Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 1/132 (0%)

Query: 26  GEKGTGAS-GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
           GEKGTG S  KPLH+K   FHR+V  F++QGGD   G+G+G +SIYGG F DE+F +KH+
Sbjct: 48  GEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHN 107

Query: 85  HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
              ++SM N G D+NGSQFFITT     LDG HVVFG+VI G + V  IE      + KP
Sbjct: 108 KEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP 167

Query: 145 RKKVTIADSGEI 156
             +V I   GE+
Sbjct: 168 FAEVRILSCGEL 179

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  216 bits (552), Expect = 5e-73
 Identities = 76/135 (56%), Positives = 90/135 (66%), Gaps = 7/135 (5%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +K   FHR++  F+IQGGD  RGDG G  SIYG  FPDENFK+KH  
Sbjct: 54  GEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 106

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V  +E        KP 
Sbjct: 107 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL 166

Query: 146 KKVTIADSGEIPKNK 160
           K V IAD G+I   K
Sbjct: 167 KDVIIADCGKIEVEK 181

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  211 bits (541), Expect = 1e-71
 Identities = 69/131 (52%), Positives = 87/131 (66%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH  
Sbjct: 42  GEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVG 94

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            GV+SM N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+  
Sbjct: 95  PGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTS 153

Query: 146 KKVTIADSGEI 156
           KK+ I D G++
Sbjct: 154 KKIVITDCGQL 164

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  213 bits (545), Expect = 2e-71
 Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 5/134 (3%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GE     +  P+ +K   FHR++  F+IQGGD +  +G GS SIYG  F DENF IKH  
Sbjct: 98  GEYKV--NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDK 155

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEG-GAGTYSG 142
            G++SM NSGP++NG QFFITT K  WLDG++VVFG++I    +  +  IE      Y  
Sbjct: 156 EGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY 215

Query: 143 KPRKKVTIADSGEI 156
           KP+  + + + GE+
Sbjct: 216 KPKIPINVVECGEL 229

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  210 bits (538), Expect = 5e-71
 Identities = 65/131 (49%), Positives = 87/131 (66%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GE+G G       +    FHR++  F+ QGGD V+GDG G  SIYG  F DENF+++H  
Sbjct: 49  GERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEG 101

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            GV+SM NSGP++NGSQFFI T K  WLDG+HVVFG+V+ G + V  +E   G+ SGK +
Sbjct: 102 FGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME-SVGSKSGKVK 160

Query: 146 KKVTIADSGEI 156
           + V I+  GE+
Sbjct: 161 EPVIISRCGEL 171

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  209 bits (534), Expect = 2e-70
 Identities = 69/131 (52%), Positives = 87/131 (66%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
            EKG G       FKG  FHRI+  F+ QGGD    +G G  SIYG  F DENF +KH+ 
Sbjct: 50  HEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG 102

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM NSGP++NGSQFF+T  K  WLDG+HVVFG+V +G+D +  IE   G+  GKP+
Sbjct: 103 PGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPK 161

Query: 146 KKVTIADSGEI 156
           +KV IAD GE 
Sbjct: 162 QKVIIADCGEY 172

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  209 bits (535), Expect = 2e-70
 Identities = 65/136 (47%), Positives = 87/136 (63%), Gaps = 10/136 (7%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             KG G       +KG  FHRI+ GF++QGGD    +G G  SIYG  FPDENF++KH+ 
Sbjct: 66  RPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTK 118

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N G  +NGSQFFIT  K  WLD +HVVFG+V++GMD V+ I    G+ SG+ +
Sbjct: 119 EGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIA-KYGSESGQVK 177

Query: 146 K--KVTIADSGEIPKN 159
           K  ++ I D G +  N
Sbjct: 178 KGYRIEIRDCGVLGSN 193

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  208 bits (533), Expect = 2e-70
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           G+ G G       +K   FHR++  F++QGGD  R +G G  SIYG  F DENF++KH+ 
Sbjct: 41  GQHGFG-------YKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTK 93

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+G ++NGSQFFITTV  SWLDG+HVVFG+VI+G+D V  +E G G+ SGK  
Sbjct: 94  PGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTN 152

Query: 146 KKVTIADSGEI 156
             + I D G +
Sbjct: 153 ATIKITDCGTV 163

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  209 bits (534), Expect = 3e-70
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GEKG G       +KG  FHRI+ GF+ QGGD  R +G G  SIYG  F DENF +KH+ 
Sbjct: 61  GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 113

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G++SM N+GP++NGSQFFI T K  WLDG+HVVFGKV +GM+ V A+E   G+ +GK  
Sbjct: 114 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 172

Query: 146 KKVTIADSGEI 156
           KK+TIAD G++
Sbjct: 173 KKITIADCGQL 183

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  208 bits (533), Expect = 3e-70
 Identities = 66/131 (50%), Positives = 78/131 (59%), Gaps = 8/131 (6%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
           GE G G       +K   FHR++  F+IQGGD    DG G  SIYG  F DEN  +KH  
Sbjct: 50  GEHGFG-------YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF- 101

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            G +SM N+GP++NGSQFFITT    WLDG HVVFGKV+ GMD V  IE        +P 
Sbjct: 102 VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPV 161

Query: 146 KKVTIADSGEI 156
           K V I  SGE+
Sbjct: 162 KPVKIVASGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  205 bits (524), Expect = 4e-68
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 28  KGTGASGK----PLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPD---ENFK 80
            GTG           ++G  FH ++    I  GDI   +G  + ++Y          ++ 
Sbjct: 61  NGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYF 120

Query: 81  IKHSHAGVVSMV----NSGPDSNGSQFFIT------TVKASWLDGEHVVFGKVIQGMDTV 130
             H   G++S+V     SG     S F IT      +     LD + VV G+V  G+D +
Sbjct: 121 YPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVL 180

Query: 131 YAIEGGAGTYSGKPRKKVTIADSGEIPKNK 160
             I      Y+G+     +I   G    + 
Sbjct: 181 DKINSMIKPYAGRKYPTFSIGKCGAYLDSS 210

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  197 bits (503), Expect = 9e-66
 Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 10/134 (7%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
              G G       ++   FHRI+  F+IQGGD  RG+G G  SIYG  F DENF  KH  
Sbjct: 46  RPAGEG-------YRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDK 98

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEG-GAGTYSG 142
            G++SM N+GP++NGSQFFITT   SWLDG+HVVFG+V   +    V  IE  G+ + S 
Sbjct: 99  KGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSV 158

Query: 143 KPRKKVTIADSGEI 156
           +   +  I + GE+
Sbjct: 159 RSNTRPKIVNCGEL 172

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  156 bits (398), Expect = 6e-50
 Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 2/116 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGP 96
           ++    FHR++  F++Q GD   GDG G +SI+G  F DE F  + HS   +VSM N GP
Sbjct: 41  YYNNCIFHRVIKHFMVQTGDP-SGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGP 99

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           ++NGSQFFITTV   WLD +H VFGKV QG   V  IE        KP + + I +
Sbjct: 100 NTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  157 bits (400), Expect = 9e-50
 Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 2/127 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
           D+NGSQFF+T     WLDG+H +FG+V QG+  V  +         +P   V I  +   
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165

Query: 157 PKNKWDE 163
                  
Sbjct: 166 GGGGSGG 172

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  155 bits (394), Expect = 3e-49
 Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 2/116 (1%)

Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPD 97
           + G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GPD
Sbjct: 48  YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPD 106

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153
           +NGSQFF+T     WLDG+H +FG+V QG+  V  +         +P   V I  +
Sbjct: 107 TNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  153 bits (390), Expect = 1e-48
 Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+ GF+IQ GD   G G G +SI+GG F DE +  ++H     +SM N+G 
Sbjct: 57  YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGS 115

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGA-GTYSGKPRKKVTIAD 152
           ++NGSQFFIT V   WLD +H VFG+V +GM+ V  I        + KP + V+I +
Sbjct: 116 NTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  154 bits (392), Expect = 1e-48
 Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
            +    FHR++  FVIQGGD   G GKG  SIYG  F DE N ++KH+ AG++SM N+GP
Sbjct: 74  FYDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGP 132

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           ++N SQFFIT      LDG+H +F +V + M  +  I     T + KP   + I
Sbjct: 133 NTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKI 186

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  148 bits (376), Expect = 1e-46
 Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 41  GKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSN 99
           G  FHR + GF++Q GD   G G+G +SI+G  F DE +  +KH+  GVVSM N+GP++N
Sbjct: 39  GCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTN 97

Query: 100 GSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGA-GTYSGKPRKKVTI 150
           GSQFFIT  K   LD ++ VFGKVI G++T+  +E       + +P   V I
Sbjct: 98  GSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI 149

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  148 bits (375), Expect = 5e-46
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGD----GKGSDSIY-------GGTFPDE-NFKIKHSH 85
           +F    FHR +  F+IQGG           +   S         G  F DE + ++ H  
Sbjct: 42  YFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQG 101

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
            GV+SM N G  SN S+FFIT      L+ +H +FG+V+ G+D +   E        KP 
Sbjct: 102 IGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPL 161

Query: 146 KKVTIAD 152
           K   + +
Sbjct: 162 KPPKVEE 168

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  146 bits (371), Expect = 2e-45
 Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 4/127 (3%)

Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPD 97
           + G  FHR +  FVIQGGD   G G G +S +G  F DE    + H+  G++SM NSGP+
Sbjct: 56  YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPN 114

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGA-GTYSGKPRKKVTIADSGEI 156
           SN SQFFIT    ++LD +H +FG+V+ G D + A+E       + +P++++ I D+  +
Sbjct: 115 SNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI-DATTV 173

Query: 157 PKNKWDE 163
             + ++E
Sbjct: 174 FVDPYEE 180

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  145 bits (368), Expect = 4e-45
 Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 6/118 (5%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSG- 95
           ++K   FH+ + GF+IQGGD   G GKG +SIYG  F DE + ++K+   G++SM + G 
Sbjct: 52  YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGA 110

Query: 96  ---PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
              P++NGSQFFIT      L+GE+V+FGK+I G +T+  +E      S KP  ++ I
Sbjct: 111 SKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIII 168

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  144 bits (365), Expect = 1e-44
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 41  GKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSN 99
              FHR+V GF++QGGD   G G G +SIYG  F DE + +++ +  G+V+M N+G   N
Sbjct: 63  NTIFHRVVPGFIVQGGDPT-GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDN 121

Query: 100 GSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSGKPRKKVTI 150
           GSQFF T  +A  L+ +H +FGKV    +  +  +         +P     I
Sbjct: 122 GSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKI 173

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  130 bits (328), Expect = 6e-39
 Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 27  EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSH 85
            +          + G  FHR++ GF+IQGGD   G G+G     G  F DE + +++   
Sbjct: 63  TQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDK 118

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYSGK 143
             +++M N+GP +NGSQFFIT  K   L+  H +FG+VI  +    V AI   A   + +
Sbjct: 119 PYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDR 178

Query: 144 PRKKVTI 150
           P   V I
Sbjct: 179 PTDPVVI 185

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  128 bits (324), Expect = 5e-38
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 41  GKPFHRIVSGFVIQGGDIVRGDGKG--SDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPD 97
              FHR+V  F++QGGD   G G+G    +  G  F  E + ++K  + G+V + N G  
Sbjct: 60  NTIFHRVVKDFIVQGGD-PTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRS 118

Query: 98  --------------SNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSG 142
                         +NG+QFFIT  +A  L+  + +FGKV    +  +            
Sbjct: 119 SKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKED 178

Query: 143 KPRKKVTI 150
           +P     I
Sbjct: 179 RPMTPPFI 186

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  102 bits (257), Expect = 1e-28
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSM-VNSG 95
           H+ G  FHR+++GF+IQGG       K   +       +E N  +K+     ++M   + 
Sbjct: 39  HYDGTIFHRVINGFMIQGGGF-EPGLKQKPT--DAPIANEANNGLKND-TYTIAMARTND 94

Query: 96  PDSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIE----GGAGTYSGK 143
           P S  +QFFI      +L+          + VFGKV++G D V  I+    G  G +   
Sbjct: 95  PHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDV 154

Query: 144 PRKKVTI 150
           P   V I
Sbjct: 155 PNDDVVI 161

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  101 bits (255), Expect = 3e-28
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA-GVVSM-VNSG 95
            +    FHR+++GF+IQGG     +             +E       +  G ++M     
Sbjct: 35  FYNNTIFHRVINGFMIQGGG---FEPGMKQKATKEPIKNE-ANNGLKNTRGTLAMARTQA 90

Query: 96  PDSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIE----GGAGTYSGK 143
           P S  +QFFI  V   +L+          + VF +V+ GMD V  I+    G +G +   
Sbjct: 91  PHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDV 150

Query: 144 PRKKVTI 150
           P++ V I
Sbjct: 151 PKEDVII 157

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =   99 bits (250), Expect = 2e-27
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA-GVVSMV-NSG 95
            +    FHR++ GF+IQGG       +           +E       +  G ++M   + 
Sbjct: 40  FYNNTTFHRVIPGFMIQGGGF-TEQMQQKKP--NPPIKNE-ADNGLRNTRGTIAMARTAD 95

Query: 96  PDSNGSQFFITTVKASWLDGE-----HVVFGKVIQGMDTVYAIE----GGAGTYSGKPRK 146
            DS  SQFFI     ++LD       + VFGKV++GMD    I        G Y   P K
Sbjct: 96  KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSK 155

Query: 147 KVTI 150
            V I
Sbjct: 156 PVVI 159

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 99.3 bits (247), Expect = 1e-25
 Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 35/132 (26%)

Query: 39  FKGKPFHRIVSGFVIQGGDIVRGDGKGSD--------------------SIYGGTFPD-- 76
           + G    R   GFV+Q GD         D                      YG T  +  
Sbjct: 215 YDGMEIQR-SDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELG 273

Query: 77  ---ENFKIKHSHAGVVSMVNSG--PDSNGSQFFITTVK-------ASWLDGEHVVFGKVI 124
                  I  +  G ++M       DS  SQ F    +       ++ LDG + VFG V 
Sbjct: 274 LYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVT 333

Query: 125 QGMDTVYAIEGG 136
              D +  ++ G
Sbjct: 334 DNEDFLADLKVG 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.4e-49  Score=300.38  Aligned_cols=150  Identities=47%  Similarity=0.776  Sum_probs=141.0

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCC-CCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGAS-GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~-~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+||||++.||      +.||++++|.+.. ++++||+|+.||||+|+|+|||||++.++++++.++|+..+++|+..
T Consensus        21 G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~  100 (177)
T 1a58_A           21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFV  100 (177)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSCBCCCCCC
T ss_pred             eeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCcccC
Confidence            4899999999999      8899988876533 45669999999999999999999998889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      ++|+.+|+||||+.+|++++||||||+.++|+||++|+|||+|++|||||++|++.+++.+++|.++|+|.+||+|.
T Consensus       101 ~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l~  177 (177)
T 1a58_A          101 MKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV  177 (177)
T ss_dssp             SCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEC
T ss_pred             cccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999984

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.2e-49  Score=299.79  Aligned_cols=151  Identities=54%  Similarity=0.956  Sum_probs=141.5

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++++|++..++.+||+|+.||||+|+|+|||||++.++++++.++|+..+++|+..
T Consensus        17 ~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE~~~   96 (173)
T 2igv_A           17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFK   96 (173)
T ss_dssp             EEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             cceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCcccc
Confidence            34899999999999      889998888777778889999999999999999999998888999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPK  158 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~  158 (165)
                      ++|+++|+||||+.+|++++||||||+.++|+||++|+|||+|++|||||++|++..+ .+++|.++|+|.+||+|++
T Consensus        97 l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~~g~l~~  173 (173)
T 2igv_A           97 EKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPVKDCMIADCGQLKA  173 (173)
T ss_dssp             SCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEEEEEEEECC
T ss_pred             cCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEEeEEEcC
Confidence            9999999999999999999999999999999999999999999999999999997766 5789999999999999963

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.8e-49  Score=299.22  Aligned_cols=149  Identities=46%  Similarity=0.758  Sum_probs=140.9

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCC-CCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGA-SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~-~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+||||++.||      +.||+|++|.+. .++.+||+|+.||||+|+|+|||||+..+++.++.++|+..+++|+..
T Consensus        24 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~  103 (179)
T 2wfi_A           24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFA  103 (179)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCCC
T ss_pred             eEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccCCcccccccC
Confidence            4899999999999      889999887652 356789999999999999999999998888999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+++|+||||+.+|++++||||||+.++|+||++|+|||||++|||||++|++.+++.+++|.++|+|.+||+|
T Consensus       104 ~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          104 VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL  179 (179)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred             cCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-49  Score=299.98  Aligned_cols=151  Identities=46%  Similarity=0.732  Sum_probs=141.9

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCC-CCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGA-SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~-~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+||||++.||      +.||+|++|.+. .++.+||+|+.||||+|+|+|||||++.+++.++.++||..+++|+..
T Consensus        34 G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~f~dE~~~  113 (192)
T 2he9_A           34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFI  113 (192)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCCC
T ss_pred             ceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCcccCcccc
Confidence            4899999999999      889999887652 356789999999999999999999998888999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPK  158 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~  158 (165)
                      ++|+++|+||||+.+|++++||||||+.++|+||++|+|||+|++|||||++|++.+++.+++|..+|+|.+||+|.+
T Consensus       114 l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          114 LKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEECC-
T ss_pred             CCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEEEcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999964

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=6.8e-49  Score=294.96  Aligned_cols=148  Identities=48%  Similarity=0.828  Sum_probs=138.2

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||+++ |++..++..+|+|+.||||+|+|+|||||++.++++++.++|+..+++|+..
T Consensus        17 ~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~   95 (170)
T 1qng_A           17 AGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFN   95 (170)
T ss_dssp             EEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccccc
Confidence            45899999999999      7788765 5555677788999999999999999999998888999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+++|+||||+.+|++++||||||+.++|+||++|+|||+|++|||||++|++.++ .+++|.++|+|.+||+|
T Consensus        96 l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A           96 MKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred             cccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCCeEEEeceeC
Confidence            9999999999999999999999999999999999999999999999999999998887 78999999999999986

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=1.7e-48  Score=296.25  Aligned_cols=148  Identities=52%  Similarity=0.852  Sum_probs=139.0

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++++|++..++.++|+|+.||||+|+|+|||||++.++++++.++|+..+++|+..
T Consensus        33 ~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~  112 (186)
T 2poy_A           33 AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFV  112 (186)
T ss_dssp             EEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-CBCCCCCC
T ss_pred             cccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCcccCcccc
Confidence            34899999999999      889998888877788889999999999999999999998888999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE  155 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~  155 (165)
                      ++|+++|+||||+.+|++++||||||+.++|+||++|+|||+|++|||||++|++.++ .+++|.++|+|.+||+
T Consensus       113 l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          113 YTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCITASGV  186 (186)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEC
T ss_pred             cccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCCCCCEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999999999998877 6789999999999995

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.2e-48  Score=295.23  Aligned_cols=148  Identities=47%  Similarity=0.790  Sum_probs=138.1

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++..|.  .++..+|+|+.||||+|+|+|||||+..++++++.++|+..+++|+..
T Consensus        24 ~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~  101 (177)
T 1mzw_A           24 VGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK  101 (177)
T ss_dssp             EEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCCCC
T ss_pred             ceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCcccc
Confidence            34899999999999      7788776543  346667999999999999999999998889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++.+++.+++|.++|+|.+||+|
T Consensus       102 l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          102 LRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  177 (177)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             cccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.7e-48  Score=294.94  Aligned_cols=150  Identities=53%  Similarity=0.844  Sum_probs=139.4

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      +.||++++|++       |+|+.||||+|+|+|||||+..+++.++.++||..+++|+..+
T Consensus        30 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l  102 (188)
T 3ich_A           30 GRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKL  102 (188)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHhcccCCcc-------ccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccccCc
Confidence            4899999999999      78998777643       9999999999999999999777889999999999999998899


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee--cCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI--PKN  159 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l--~~~  159 (165)
                      +|+.+|+||||+.++++++||||||+.++|+||++|+|||||++||+||++|++..++..++|.++|+|.+|++|  ++|
T Consensus       103 ~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~~~~P  182 (188)
T 3ich_A          103 KHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKP  182 (188)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEE
T ss_pred             ccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999988999999999999998  566


Q ss_pred             CCCCC
Q 031152          160 KWDEE  164 (165)
Q Consensus       160 ~~~~e  164 (165)
                      +.+++
T Consensus       183 f~~~~  187 (188)
T 3ich_A          183 FAIAK  187 (188)
T ss_dssp             EECCC
T ss_pred             CCCCC
Confidence            66554

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=2.4e-47  Score=286.84  Aligned_cols=142  Identities=46%  Similarity=0.797  Sum_probs=132.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||++++|++       |+|+.||||+|+|+|||||+..++++++.++|+..+++|+..+
T Consensus        25 G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~~~l   97 (172)
T 2cmt_A           25 GRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQL   97 (172)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHhccCCCce-------ECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCcccccccCc
Confidence            4899999999999      78897766632       9999999999999999999988889999999999999999999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      +|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.++ ++++|.++|+|.+||+|+
T Consensus        98 ~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A           98 RHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVIISRCGELI  172 (172)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCC-TTCCCSSCEEEEEEEEEC
T ss_pred             ccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCCEEEEEeEeEC
Confidence            999999999999999999999999999999999999999999999999999997766 568999999999999984

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2.5e-47  Score=285.20  Aligned_cols=142  Identities=49%  Similarity=0.856  Sum_probs=133.0

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||+|++|++       |+|+.||||+|+|+|||||++.++++++.++|+..+++|+..+
T Consensus        18 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l   90 (165)
T 2z6w_A           18 GRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTL   90 (165)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHhccCCCcc-------CcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCccccc
Confidence            4899999999999      78998776643       9999999999999999999988889999999999999999899


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      +|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.. +.+++|.++|+|.+||+|.
T Consensus        91 ~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~-~~~~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A           91 KHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS  165 (165)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTC-CTTSCCSSCEEEEEEEECC
T ss_pred             ccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCC-CCCCCCCCcEEEEEeEEEC
Confidence            99999999999999999999999999999999999999999999999999999776 5789999999999999984

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=3e-47  Score=286.68  Aligned_cols=142  Identities=49%  Similarity=0.802  Sum_probs=132.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||++++|++       |+|+.||||+|+|+|||||++.++++++.++|+..+++|+..+
T Consensus        26 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l   98 (173)
T 2r99_A           26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFIL   98 (173)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHhcccCCce-------ecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCcccCc
Confidence            4899999999999      78998777642       9999999999999999999988889999999999999999999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      +|+.+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++..+ .+++|.++|+|.+||+|+
T Consensus        99 ~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A           99 KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVIIADCGEYV  173 (173)
T ss_dssp             CCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSCEEEEEEEECC
T ss_pred             ccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCCeEEEEeeeEC
Confidence            999999999999999999999999999999999999999999999999999997665 468999999999999984

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.4e-47  Score=287.93  Aligned_cols=141  Identities=48%  Similarity=0.802  Sum_probs=133.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||+|++|++       |+|+.||||+|+|+|||||+..+++.++.++|+..+++|+..+
T Consensus        26 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~l   98 (172)
T 2haq_A           26 GRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNV   98 (172)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCCCCS
T ss_pred             ceEEEEEeCCCCcHHHHHHHHHhccCCCcc-------cCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcCCCc
Confidence            4899999999999      78998877643       9999999999999999999877889999999999999998899


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      +|+ +|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++.+++..++|.++|+|.+||+|
T Consensus        99 ~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A           99 KHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL  172 (172)
T ss_dssp             CCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             ccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence            999 99999999999999999999999999999999999999999999999999999988999999999999986

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=7.8e-47  Score=282.36  Aligned_cols=143  Identities=46%  Similarity=0.844  Sum_probs=133.4

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++++|++       |+|+.|||++|+|+|||||+...++.++.++|+..+++|+..
T Consensus        16 ~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~~~   88 (164)
T 3pmp_A           16 EGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQ   88 (164)
T ss_dssp             EEEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             eeEEEEEEeCCCCcHHHHHHHHHhcccCCCc-------ccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCccccccccc
Confidence            34899999999999      78998777643       999999999999999999987889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      ++|+++|+||||+.++++++|||||++.++|+||++|+|||||++|||||++|++.+++ +++|.++|+|.+||+|.
T Consensus        89 l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l~  164 (164)
T 3pmp_A           89 VKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTVA  164 (164)
T ss_dssp             SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC-
T ss_pred             cCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEEC
Confidence            99999999999999999999999999999999999999999999999999999987765 79999999999999984

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=6.6e-47  Score=287.39  Aligned_cols=146  Identities=38%  Similarity=0.563  Sum_probs=132.3

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCC-cc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN-FK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~-~~   80 (165)
                      =||+||||++.||      +.||+  .|        ||+|+.||||+|+|+|||||++ +++.++.++||..+++|+ ..
T Consensus        26 G~i~ieL~~~~aP~t~~NF~~L~~--~g--------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~   94 (185)
T 2poe_A           26 GDLKFELFCSQCPKACKNFLALSA--SG--------YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPE   94 (185)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH--TT--------TTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCCCTT
T ss_pred             ccEEEEEeCCCCcHHHHHHHHHhc--cC--------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccccCC
Confidence            4899999999999      66773  33        6999999999999999999996 778889999999999997 68


Q ss_pred             ccCCcceEEEEecCC----CCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSG----PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~----~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+.+|+||||+.+    |++++|||||++.++|+||++|+|||+|++||+||++|++.+++.+++|.++|+|.+|+++
T Consensus        95 l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~  174 (185)
T 2poe_A           95 LKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH  174 (185)
T ss_dssp             SCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEE
T ss_pred             CccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEE
Confidence            899899999999998    9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 031152          157 PKNKWDEE  164 (165)
Q Consensus       157 ~~~~~~~e  164 (165)
                      .+|+.|+|
T Consensus       175 ~dPf~d~~  182 (185)
T 2poe_A          175 SNPIADQE  182 (185)
T ss_dssp             CCC-----
T ss_pred             CCCCCCcc
Confidence            99998876

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.6e-46  Score=285.62  Aligned_cols=144  Identities=53%  Similarity=0.871  Sum_probs=136.4

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++++|.       ||+|+.||||+|+|+|||||++.+++.++.++|+..+++|+..
T Consensus        26 ~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de~~~   98 (185)
T 4fru_A           26 IGRVVIGLFGKTVPKTVDNFVALATGEKGF-------GYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFK   98 (185)
T ss_dssp             EEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             cceEEEEEeCCCCcHHHHHHHHHHhcCCCC-------eEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCccccc
Confidence            34899999999999      7789876663       4999999999999999999998899999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      ++|+.+|+||||+.++++++|||||++.++|+||++|+|||||++|||||++|++.+++.+++|.++|+|.+||+|.
T Consensus        99 ~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l~  175 (185)
T 4fru_A           99 LKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIE  175 (185)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred             cCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=7.4e-47  Score=294.76  Aligned_cols=147  Identities=41%  Similarity=0.688  Sum_probs=138.1

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||++.+|.+  ++..||+|+.||||+|+|+|||||++.+++.++.++|+..+++|+..+
T Consensus        74 G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE~~~l  151 (229)
T 1z81_A           74 GKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDI  151 (229)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCCCCS
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCccccccccc
Confidence            4899999999999      78898776543  566789999999999999999999988899999999999999999999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEE--cCHHHHHHHhcCCCCCC-CCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYS-GKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi--~G~evl~~I~~~~~~~~-~~P~~~i~I~~cg~l  156 (165)
                      +|+.+|+||||+.+|++++||||||+.++|+||++|+|||||+  +|||||++|++..++.+ ++|.++|+|.+||+|
T Consensus       152 ~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          152 KHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  229 (229)
T ss_dssp             CCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             ccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence            9999999999999999999999999999999999999999999  99999999999999887 999999999999986

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.3e-46  Score=278.99  Aligned_cols=144  Identities=36%  Similarity=0.486  Sum_probs=133.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||+  .        +||+|+.||||+|+|+|||||+. +++.++.++|+..+++|.. .
T Consensus        10 G~i~ieL~~~~aP~t~~NF~~L~~--~--------g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~   78 (161)
T 2ok3_A           10 GDIKIEVFCERTPKTCENFLALCA--S--------NYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEY   78 (161)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH--T--------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTT
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHhh--h--------cccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccccCcC
Confidence            4899999999999      66773  2        36999999999999999999996 7788899999999999975 7


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS-GKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+.+|+||||+.++++++|||||++.++|+||++|+|||+|++||+||++|++.+++.+ ++|.++|+|.+|.++.+|
T Consensus        79 l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~P  158 (161)
T 2ok3_A           79 LKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP  158 (161)
T ss_dssp             CCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCS
T ss_pred             cCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecCC
Confidence            8998999999999999999999999999999999999999999999999999999999887 999999999999999988


Q ss_pred             CCC
Q 031152          160 KWD  162 (165)
Q Consensus       160 ~~~  162 (165)
                      +.|
T Consensus       159 f~d  161 (161)
T 2ok3_A          159 FAQ  161 (161)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            764

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=5.4e-46  Score=282.24  Aligned_cols=143  Identities=51%  Similarity=0.839  Sum_probs=133.7

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||+++.|++       |+|+.||||+|+|+|||||+..+++.++.++|+..+++|+..
T Consensus        36 ~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de~~~  108 (184)
T 3rdd_A           36 LGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFI  108 (184)
T ss_dssp             EEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             eeEEEEEEeCCCCcHHHHHHHHHhccCcCcc-------cCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCcccc
Confidence            34899999999999      77998777653       999999999999999999988889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      ++|+++|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|++.. +++++|.++|+|.+||+|+
T Consensus       109 l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~-~~~g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          109 LKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFG-SRNGKTSKKITIADCGQLE  184 (184)
T ss_dssp             SCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCCSSCEEEEEEEECC
T ss_pred             cccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcC-CCCCCCcCCeEEEeCeEEC
Confidence            999999999999999999999999999999999999999999999999999999766 4689999999999999984

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=3.9e-46  Score=286.61  Aligned_cols=147  Identities=29%  Similarity=0.335  Sum_probs=126.9

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEee-----eCCCCCCCCCCccc------
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGG-----DIVRGDGKGSDSIY------   70 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~G-----d~~~~~~~~~~s~~------   70 (165)
                      =+|+|+||++.||      +.||.  .|        ||+|+.||||+|+|+||||     |++ +++.++.++|      
T Consensus        16 G~i~ieL~~~~aP~t~~NF~~L~~--~g--------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~si~~~~~~~   84 (201)
T 3bo7_A           16 GSLNIELHADMAPRACDSFLRLCA--VK--------YFDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQSPRSISGFP   84 (201)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH--TT--------TTTTCBEEEEETTTEEEECCGGGCCC--------CCSSCCCSST
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHh--cC--------ccCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCcccccccccc
Confidence            3899999999999      66773  33        6999999999999999999     986 7788889999      


Q ss_pred             -CCCCCCCC-ccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcce
Q 031152           71 -GGTFPDEN-FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKV  148 (165)
Q Consensus        71 -g~~~~~e~-~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i  148 (165)
                       +..+++|. ..++|+.+|+||||+.+|++++|||||++.++|+||++|+|||+|++||+||++|++.+++.+++|..+|
T Consensus        85 ~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i  164 (201)
T 3bo7_A           85 GGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPP  164 (201)
T ss_dssp             TCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCC
T ss_pred             CCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCe
Confidence             88999995 6889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeeeecCCCCCCCC
Q 031152          149 TIADSGEIPKNKWDEER  165 (165)
Q Consensus       149 ~I~~cg~l~~~~~~~e~  165 (165)
                      +|.+|+++.+|+.|.++
T Consensus       165 ~I~~~~v~~dPf~d~~~  181 (201)
T 3bo7_A          165 KVEEIIVFKNPFEDARK  181 (201)
T ss_dssp             BEEEEEEEECCC-----
T ss_pred             EEEEEEEEcCCccCHHH
Confidence            99999999999988764

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-46  Score=286.20  Aligned_cols=146  Identities=34%  Similarity=0.534  Sum_probs=134.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCC-cc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN-FK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~-~~   80 (165)
                      =||+|+||++.||      +.||  +.|        ||+|+.||||+|+|+|||||+. +++.++.++||..+++|. ..
T Consensus        29 G~I~ieL~~~~aP~tv~NF~~L~--~~g--------~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~~~~   97 (197)
T 1zkc_A           29 GDLNLELHCDLTPKTCENFIRLC--KKH--------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPN   97 (197)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHH--HTT--------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTT
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHH--hcC--------CCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCccccccCcC
Confidence            3899999999999      6677  333        6999999999999999999996 778889999999999994 68


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS-GKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+.+|+||||+.++++++|||||++.++|+||++|+|||+|++|||||++|++.+++.+ ++|..+|+|.+|+++.++
T Consensus        98 l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~dP  177 (197)
T 1zkc_A           98 LSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDP  177 (197)
T ss_dssp             CCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECT
T ss_pred             cCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEcCC
Confidence            8999999999999999999999999999999999999999999999999999999999887 999999999999999998


Q ss_pred             CCCCC
Q 031152          160 KWDEE  164 (165)
Q Consensus       160 ~~~~e  164 (165)
                      +.|.+
T Consensus       178 f~d~~  182 (197)
T 1zkc_A          178 YEEAD  182 (197)
T ss_dssp             THHHH
T ss_pred             cccHH
Confidence            87653

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-46  Score=283.27  Aligned_cols=142  Identities=42%  Similarity=0.750  Sum_probs=104.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||++++|++       |+|+.||||+|+|+|||||+..++++++.++|+..+++|+..+
T Consensus        22 G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~~   94 (172)
T 2c3b_A           22 GRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSR   94 (172)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHSCTTTS-------STTCBCCEEETTTEEEECC----------------------CH
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHhccCCCcc-------cCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCccccc
Confidence            5999999999999      78998777643       9999999999999999999667888999999999999998899


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCCCC-CCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ--GMDTVYAIEGGAGTYSG-KPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~--G~evl~~I~~~~~~~~~-~P~~~i~I~~cg~l  156 (165)
                      +|+.+|+||||+.+|++++|||||++.++|+||++|+|||||++  |||||++|++.+++..+ +|.++|+|.+||+|
T Consensus        95 ~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A           95 KHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             HHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             ccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence            99999999999999999999999999999999999999999999  99999999988887655 99999999999986

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.1e-45  Score=280.73  Aligned_cols=143  Identities=44%  Similarity=0.757  Sum_probs=133.9

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      .=||+||||++.||      +.||++++|++       |+|+.||||+|+|+|||||+..+++.++.++|+..+++|+..
T Consensus        41 ~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~~~  113 (193)
T 3k2c_A           41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFE  113 (193)
T ss_dssp             EEEEEEEECTTTSHHHHHHHHHHHHSCTTSS-------STTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCCC
T ss_pred             eeEEEEEEcCCCChHHHHHHHHHhccccCCc-------ccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCcccccccc
Confidence            34899999999999      77998777643       999999999999999999988889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCC--cceEEeeeeeec
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR--KKVTIADSGEIP  157 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~--~~i~I~~cg~l~  157 (165)
                      ++|+.+|+||||+.++++++|||||++.++|+||++|+|||||++|||||++|++..++ +++|.  .+|+|.+||+|.
T Consensus       114 l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          114 LKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEEEEEEEECC
T ss_pred             cccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEEEEEceEeC
Confidence            99999999999999999999999999999999999999999999999999999977776 68999  999999999996

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=2.2e-45  Score=273.37  Aligned_cols=138  Identities=39%  Similarity=0.565  Sum_probs=128.7

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||  +.        +||+|+.||||+|+|+|||||+. +++.++.++|+..+++|+. .
T Consensus        15 G~i~ieL~~~~aP~t~~NF~~L~--~~--------g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~   83 (160)
T 2fu0_A           15 GDIHISLFYKECKKTVQNFSVHS--IN--------GYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDH   83 (160)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHH--HT--------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTT
T ss_pred             ccEEEEEeCCCChHHHHHHHHHh--cc--------CccCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCCccccccCC
Confidence            3899999999999      6677  23        36999999999999999999995 7788899999999999987 6


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++.+++|.++|+|.+|.++
T Consensus        84 l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~  159 (160)
T 2fu0_A           84 LNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKIN  159 (160)
T ss_dssp             BCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC
T ss_pred             cccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEe
Confidence            8999999999999999999999999999999999999999999999999999999999989999999999999876

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.8e-45  Score=280.32  Aligned_cols=141  Identities=37%  Similarity=0.527  Sum_probs=128.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCC-cc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN-FK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~-~~   80 (165)
                      =||+|+||++.||      +.||.  .        +||+|+.||||+|+|+|||||+. +++.++.++||..+++|. ..
T Consensus        48 G~I~ieL~~~~aP~tv~NF~~L~~--~--------g~Y~g~~FhRVi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~  116 (196)
T 2b71_A           48 GDFEVELYWYHSPKTCLNFYTLCE--M--------GFYDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKE  116 (196)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHH--T--------TTTTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBCCCCCTT
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHhh--c--------CCcCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCCcccccccCC
Confidence            4899999999999      66773  3        36999999999999999999996 778889999999999995 57


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+.+|+||||+.+|++++|||||++.++|+||++|+|||||++||+||++|++.+++.+++|.++|+|.+|.++.+|
T Consensus       117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~dP  195 (196)
T 2b71_A          117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVNA  195 (196)
T ss_dssp             CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC----
T ss_pred             cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEecCC
Confidence            8998999999999999999999999999999999999999999999999999999999999999999999999999765

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=3.5e-45  Score=278.90  Aligned_cols=145  Identities=32%  Similarity=0.473  Sum_probs=131.3

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCC--CC---CCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCC
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGA--SG---KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPD   76 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~--~~---~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~   76 (165)
                      =||+||||++.||      +.||+|++++..  .+   +.+||+|+.||||+|+|+|||||+. +++.++   +|..+++
T Consensus        33 G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~-g~G~gg---~g~~f~d  108 (191)
T 1w74_A           33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGG---PGYKFAD  108 (191)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-SSSSCC---SSCCBCC
T ss_pred             eeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC-CCCCCC---CCCcccc
Confidence            4899999999999      889999988632  11   3579999999999999999999984 566665   5888999


Q ss_pred             CC-ccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCCCCCCCcceEEeee
Q 031152           77 EN-FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ--GMDTVYAIEGGAGTYSGKPRKKVTIADS  153 (165)
Q Consensus        77 e~-~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~--G~evl~~I~~~~~~~~~~P~~~i~I~~c  153 (165)
                      |. ..++|+.+|+||||+.+|++++||||||+.++|+||++|+|||||++  ||+||++|++.+++.+++|.++|+|.+|
T Consensus       109 E~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~  188 (191)
T 1w74_A          109 EFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI  188 (191)
T ss_dssp             CCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEE
T ss_pred             ccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEEE
Confidence            94 68999999999999999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             eee
Q 031152          154 GEI  156 (165)
Q Consensus       154 g~l  156 (165)
                      +++
T Consensus       189 ~i~  191 (191)
T 1w74_A          189 TIS  191 (191)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=3.2e-45  Score=273.93  Aligned_cols=138  Identities=38%  Similarity=0.673  Sum_probs=128.7

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||  +.|        ||+|+.||||+|+|+|||||+. +++.++.++|+..+++|+. .
T Consensus        21 G~i~ieL~~~~aP~t~~NF~~L~--~~g--------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~   89 (166)
T 2x7k_A           21 GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPD   89 (166)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHH--HHT--------TTTTEECCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTT
T ss_pred             CcEEEEEccCCCCHHHHHHHHHH--hcC--------CCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCccccccccc
Confidence            3899999999999      6677  333        6999999999999999999996 7788899999999999984 8


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ++|..+|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++.+++|.++|+|.+|.++
T Consensus        90 l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A           90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             cCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence            8998899999999999999999999999999999999999999999999999999999998999999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.6e-45  Score=288.62  Aligned_cols=157  Identities=22%  Similarity=0.314  Sum_probs=132.4

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCC------CC----CCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCccc
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTG------AS----GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIY   70 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~------~~----~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~   70 (165)
                      .=||+||||.+.||      +.||++++.+.      ..    ++...|+|+.||||+|+|||||||+..++++++.++|
T Consensus        28 ~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~siy  107 (234)
T 2ose_A           28 IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVY  107 (234)
T ss_dssp             EEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC----CCCCCTT
T ss_pred             cceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCCCCCCcccc
Confidence            45899999999999      78998762211      00    1222399999999999999999998778899999999


Q ss_pred             CCC-----CCCCCccccCCcceEEEEec----CCCCCCCceEEEEcCC------CCCCCCCCcEEEEEEcCHHHHHHHhc
Q 031152           71 GGT-----FPDENFKIKHSHAGVVSMVN----SGPDSNGSQFFITTVK------ASWLDGEHVVFGKVIQGMDTVYAIEG  135 (165)
Q Consensus        71 g~~-----~~~e~~~~~h~~~G~lsm~~----~~~~~~~sqF~Itl~~------~~~ld~~~~vFGrVi~G~evl~~I~~  135 (165)
                      |..     |+  ++.++|+.+|+||||+    .++++++||||||+.+      +|+||++|+|||+|++|||||++|++
T Consensus       108 g~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~  185 (234)
T 2ose_A          108 CDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS  185 (234)
T ss_dssp             TTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHH
T ss_pred             CCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHh
Confidence            987     65  4588998999999999    8999999999999999      99999999999999999999999999


Q ss_pred             CCCCCCCCCCcceEEeeeeeecCCCCCCCC
Q 031152          136 GAGTYSGKPRKKVTIADSGEIPKNKWDEER  165 (165)
Q Consensus       136 ~~~~~~~~P~~~i~I~~cg~l~~~~~~~e~  165 (165)
                      ..++.+++|..+|+|.+|+++.+++.+.+|
T Consensus       186 ~~t~~~~~P~~~V~I~~~~~l~~p~~~~~k  215 (234)
T 2ose_A          186 MIKPYAGRKYPTFSIGKCGAYLDSSQAQRK  215 (234)
T ss_dssp             HTCCCTTCCCCCEEEEEEEECCCHHHHCC-
T ss_pred             CCcCCCCCccCCEEEEEEEEecCCcccccc
Confidence            999999999999999999999987766543

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=277.45  Aligned_cols=143  Identities=37%  Similarity=0.638  Sum_probs=132.2

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      ||+||||++.||      +.||+  .|        ||+++.||||+|+|+|||||+. +++.++.++|+..+++|+. .+
T Consensus        22 ~I~ieL~~d~aP~tv~NF~~L~~--~g--------~Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~si~g~~f~dE~~~~l   90 (203)
T 2k7n_A           22 IIVLELYWKHAPKTCKNFAELAR--RG--------YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDL   90 (203)
T ss_dssp             EEEEEECTTTCTTHHHHHHHHHH--HT--------CGGGCEEEEEETTTEEEEECSS-SSSSCCCTTSCSCBCCCCCCSS
T ss_pred             cEEEEEccCCCcHHHHHHHHHHh--cC--------ccCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCCcccccccccc
Confidence            899999999999      66773  33        6999999999999999999996 7788889999999999974 88


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW  161 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~~  161 (165)
                      +|..+|+||||+.++++++|||||++.++|+||++|+|||||++|||||++|++.+++.+++|.++|+|.+|+++..++-
T Consensus        91 ~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~~s  170 (203)
T 2k7n_A           91 KFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGS  170 (203)
T ss_dssp             CCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCCCC
T ss_pred             cCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecCCC
Confidence            99889999999999999999999999999999999999999999999999999999988899999999999999987654


Q ss_pred             C
Q 031152          162 D  162 (165)
Q Consensus       162 ~  162 (165)
                      +
T Consensus       171 ~  171 (203)
T 2k7n_A          171 G  171 (203)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2.9e-44  Score=270.93  Aligned_cols=137  Identities=38%  Similarity=0.621  Sum_probs=127.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||.  .        +||+|+.||||+|+|+|||||+. +++.++.++||..+++|+. .
T Consensus        31 G~i~ieL~~~~aP~t~~NF~~L~~--~--------g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~   99 (176)
T 2a2n_A           31 GDIHTKLFPVECPKTVENFCVHSR--N--------GYYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHST   99 (176)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH--T--------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTT
T ss_pred             ccEEEEEeCCCChHHHHHHHHHhh--c--------CccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCccccccccc
Confidence            3899999999999      66773  3        36999999999999999999995 7788899999999999987 6


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC-CCCCCCcceEEeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGT-YSGKPRKKVTIADSGE  155 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~-~~~~P~~~i~I~~cg~  155 (165)
                      ++|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++.+++ .+++|.++|+|.+|.+
T Consensus       100 l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          100 LRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             CCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             cccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999888 6899999999999975

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=4.4e-44  Score=296.57  Aligned_cols=151  Identities=49%  Similarity=0.807  Sum_probs=141.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCC-CCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGAS-GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~-~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+|+||++.||      +.||++++|++.. |++.||+|+.||||+|+|+|||||++.++|+++.++||..+++|+..
T Consensus        30 G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~~~~~~~~~e~~~  109 (370)
T 1ihg_A           30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH  109 (370)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             ccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCCCCCCCcCCCcCC
Confidence            4899999999999      8899999887543 56678999999999999999999999889999999999999999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+.+|+||||+.+|++++||||||+.++|+||++|+|||+|++||+||++|++..++. ++|..+|+|.+|+++..+
T Consensus       110 ~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~~~v~I~~~g~l~~~  187 (370)
T 1ihg_A          110 YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELKEG  187 (370)
T ss_dssp             BCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEESSCEEEEEEEEECTT
T ss_pred             cCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-CccceeEEEEEEEEeccC
Confidence            999999999999999999999999999999999999999999999999999999887776 999999999999999754

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=269.61  Aligned_cols=143  Identities=31%  Similarity=0.478  Sum_probs=130.3

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||+  .        +||+|+.||||+|+|+|||||+. +++.++.++||..+++|.. .
T Consensus        34 G~I~ieL~~~~aP~tv~NF~~L~~--~--------g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~  102 (185)
T 2hq6_A           34 GDIDIELWSKEAPKACRNFIQLCL--E--------AYYDNTIFHRVVPGFIVQGGDPT-GTGSGGESIYGAPFKDEFHSR  102 (185)
T ss_dssp             EEEEEEEBTTTCHHHHHHHHHHHH--T--------TTTTTEECCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTT
T ss_pred             ccEEEEEeCCCCcHHHHHHHHHhh--c--------CccCCCEEEEEECCCEEEcCCCC-CCCCCCCcccCCccccccccC
Confidence            4899999999999      66773  3        36999999999999999999996 7788889999999999986 6


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHH--HHHhcCCCCCCCCCCcceEEeeeeeecC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV--YAIEGGAGTYSGKPRKKVTIADSGEIPK  158 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl--~~I~~~~~~~~~~P~~~i~I~~cg~l~~  158 (165)
                      ++|+.+|+||||+.++++++|||||++.++|+||++|+|||||+ ||+++  ++|++..++.+++|.++|+|.+|+++.+
T Consensus       103 l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~~  181 (185)
T 2hq6_A          103 LRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFN  181 (185)
T ss_dssp             BCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEEC
T ss_pred             cccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeCC
Confidence            88999999999999999999999999999999999999999999 88774  6899888999999999999999999998


Q ss_pred             CCCC
Q 031152          159 NKWD  162 (165)
Q Consensus       159 ~~~~  162 (165)
                      |+.|
T Consensus       182 Pf~d  185 (185)
T 2hq6_A          182 PFDD  185 (185)
T ss_dssp             TTC-
T ss_pred             CCCC
Confidence            8865

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.8e-42  Score=270.95  Aligned_cols=144  Identities=28%  Similarity=0.380  Sum_probs=130.0

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCccc--CCCCCCCCc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIY--GGTFPDENF   79 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~--g~~~~~e~~   79 (165)
                      =+|+|+||++.||      +.||+  .|        ||+|+.||||+|+|+|||||++ +++.++.++|  |..+++|..
T Consensus        31 G~I~ieL~~d~aP~tv~NF~~L~~--~g--------~Ydgt~FhRVi~~FmiQgGdp~-~~G~Gg~si~~~g~~f~dE~~   99 (232)
T 3bkp_A           31 GDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIFHRVVKDFIVQGGDPT-GTGRGGADTTFDGKPFDVETH   99 (232)
T ss_dssp             EEEEEEEBTTTCHHHHHHHHHHHH--HT--------TTTTCBEEEEETTTEEEECCTT-SSSSCCCCCTTTTCCBCCCCC
T ss_pred             CcEEEEEcCCCCcHHHHHHHHHhh--cC--------ccCCCEEEEEeCCCEEEcCCCC-CCCCCCCccccCCCccCCccc
Confidence            3799999999999      66773  33        6999999999999999999996 7788999999  899999976


Q ss_pred             -cccCCcceEEEEecCCC--------------CCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHH--HHHHhcCCCCCCC
Q 031152           80 -KIKHSHAGVVSMVNSGP--------------DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDT--VYAIEGGAGTYSG  142 (165)
Q Consensus        80 -~~~h~~~G~lsm~~~~~--------------~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~ev--l~~I~~~~~~~~~  142 (165)
                       .++|+.+|+||||+.++              ++++||||||+.++|+||++|+|||+|+ ||++  |++|++++++.++
T Consensus       100 ~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~  178 (232)
T 3bkp_A          100 PRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKED  178 (232)
T ss_dssp             TTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGG
T ss_pred             cCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCC
Confidence             78899999999999987              6999999999999999999999999999 6655  8999999999999


Q ss_pred             CCCcceEEeeeeeecCCCCCC
Q 031152          143 KPRKKVTIADSGEIPKNKWDE  163 (165)
Q Consensus       143 ~P~~~i~I~~cg~l~~~~~~~  163 (165)
                      +|..+|+|.+|+++.+++.|.
T Consensus       179 ~P~~~i~I~~~~vl~dPf~d~  199 (232)
T 3bkp_A          179 RPMTPPFIKSVDVLWNPFEDL  199 (232)
T ss_dssp             CBSSCCBEEEEEEEECCCTTC
T ss_pred             CcCCCeEEEEEEEEcCChhhh
Confidence            999999999999999998775

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1.3e-42  Score=259.53  Aligned_cols=136  Identities=26%  Similarity=0.407  Sum_probs=119.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc-
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~-   80 (165)
                      =||+||||++.||      +.||  +.|        ||+|+.||||+|+|+|||||++.+.   +.++++..+++|+.. 
T Consensus         9 G~i~ieL~~~~aP~t~~NF~~L~--~~g--------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~   75 (164)
T 1lop_A            9 GDIVIKTFDDKAPETVKNFLDYC--REG--------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNG   75 (164)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHH--HTT--------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSS
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHH--hcC--------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCccccccccc
Confidence            3899999999999      6666  333        6999999999999999999986433   456778999999864 


Q ss_pred             ccCCcceEEEEecC-CCCCCCceEEEEcCCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcc
Q 031152           81 IKHSHAGVVSMVNS-GPDSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKK  147 (165)
Q Consensus        81 ~~h~~~G~lsm~~~-~~~~~~sqF~Itl~~~~~ld~~--------~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~  147 (165)
                      ++| .+|+||||+. +|++++|||||++.++++||++        |+|||+|++|||||++|++.+++.    +++|.++
T Consensus        76 l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~  154 (164)
T 1lop_A           76 LKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKED  154 (164)
T ss_dssp             CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSC
T ss_pred             ccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCC
Confidence            666 5999999975 7999999999999999999998        999999999999999999888865    5899999


Q ss_pred             eEEeeeeeec
Q 031152          148 VTIADSGEIP  157 (165)
Q Consensus       148 i~I~~cg~l~  157 (165)
                      |+|.+|++++
T Consensus       155 v~I~~~~v~~  164 (164)
T 1lop_A          155 VIIESVTVSE  164 (164)
T ss_dssp             CEEEEEEECC
T ss_pred             eEEEEEEEeC
Confidence            9999999874

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=4.7e-42  Score=256.94  Aligned_cols=137  Identities=27%  Similarity=0.343  Sum_probs=119.0

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      +.||  +.        +||+|+.||||+|+|+|||||++...+   ...++.++++|....
T Consensus        14 G~i~ieL~~~~aP~t~~NF~~L~--~~--------g~Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g~~~~dE~~~~   80 (166)
T 1v9t_A           14 GNIELELDKQKAPVSVQNFVDYV--NS--------GFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNG   80 (166)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHH--HT--------TTTTTCBEEEEETTTEEEESSBCTTCC---BCCCCCCBCCCGGGS
T ss_pred             ccEEEEEcCCCCcHHHHHHHHHh--cc--------CCCCCCEEEEEECCcEEEcCCcCcCCC---CCCCCCccccccccc
Confidence            3899999999999      6677  33        369999999999999999999974432   234577899998754


Q ss_pred             cCCcceEEEEecC-CCCCCCceEEEEcCCCCCCCCC-----CcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcceEEe
Q 031152           82 KHSHAGVVSMVNS-GPDSNGSQFFITTVKASWLDGE-----HVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVTIA  151 (165)
Q Consensus        82 ~h~~~G~lsm~~~-~~~~~~sqF~Itl~~~~~ld~~-----~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~i~I~  151 (165)
                      .|+.+|+||||+. +|++++|||||++.++++||++     |+|||+|++|||||++|++.+++.    +++|.++|+|.
T Consensus        81 l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~  160 (166)
T 1v9t_A           81 LRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL  160 (166)
T ss_dssp             CCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEE
T ss_pred             ccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEE
Confidence            5556999999997 6999999999999999999998     999999999999999999888876    47999999999


Q ss_pred             eeeeec
Q 031152          152 DSGEIP  157 (165)
Q Consensus       152 ~cg~l~  157 (165)
                      +|.+++
T Consensus       161 ~~~v~~  166 (166)
T 1v9t_A          161 SATVLP  166 (166)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            999873

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=1.7e-41  Score=254.22  Aligned_cols=135  Identities=27%  Similarity=0.405  Sum_probs=117.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =||+||||++.||      +.||+  .|        ||+|+.||||+|+|+|||||++...+   .+.++..+++|.. .
T Consensus        13 G~i~ieL~~~~aP~t~~NF~~L~~--~g--------~Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~~~~~~~E~~~~   79 (167)
T 3s6m_A           13 GVIKLELDEAKAPKTVENFLNYVK--KG--------HYDGTIFHRVINGFMIQGGGFEPGLK---QKPTDAPIANEANNG   79 (167)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH--HT--------TTTTEECCEEETTTEEEESSEETTTE---ECCCCCCBCCCGGGC
T ss_pred             ceEEEEEeCCCCcHHHHHHHHHhh--hc--------ccCCCEeEEecCCcEEEeccccCCCC---CCCCCCccCCccccc
Confidence            3899999999999      56663  33        69999999999999999999864432   2445778899965 4


Q ss_pred             ccCCcceEEEEec-CCCCCCCceEEEEcCCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcc
Q 031152           81 IKHSHAGVVSMVN-SGPDSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKK  147 (165)
Q Consensus        81 ~~h~~~G~lsm~~-~~~~~~~sqF~Itl~~~~~ld~~--------~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~  147 (165)
                      +.| .+|+||||+ .+|++++|||||++.++++||++        |+|||+|++|||||++|++.+++.    +++|.++
T Consensus        80 l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~  158 (167)
T 3s6m_A           80 LKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDD  158 (167)
T ss_dssp             CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSC
T ss_pred             ccC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCC
Confidence            555 799999999 57999999999999999999998        999999999999999999998887    6899999


Q ss_pred             eEEeeeeee
Q 031152          148 VTIADSGEI  156 (165)
Q Consensus       148 i~I~~cg~l  156 (165)
                      |+|.+|.+|
T Consensus       159 v~I~~~~il  167 (167)
T 3s6m_A          159 VVIEKAVVV  167 (167)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999886

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-34  Score=238.88  Aligned_cols=128  Identities=25%  Similarity=0.352  Sum_probs=107.6

Q ss_pred             eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCC---------------
Q 031152            7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKG---------------   65 (165)
Q Consensus         7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~---------------   65 (165)
                      .=+|+|+||++.||      +.||  +.        +||+|+.|||| |+|+|||||++ +++.|               
T Consensus       187 ~G~I~IeL~~d~AP~Tv~NFl~L~--~~--------GfYdGt~FHRV-~gFmIQgGDp~-g~G~G~~~~~~g~~~~iP~E  254 (369)
T 3rfy_A          187 DCVFRIVLDGYNAPVTAGNFVDLV--ER--------HFYDGMEIQRS-DGFVVQTGDPE-GPAEGFIDPSTEKTRTVPLE  254 (369)
T ss_dssp             EEEEEEEEETTTCHHHHHHHHHHH--HT--------TTTTTEECEEE-EEEEECCCCCC-CCCSCCCSCCCCCCCSSSSS
T ss_pred             ceEEEEEEeCCCCcHHHHHHHHHh--hc--------CCcCCCeeeee-CCeeEecCCCC-CCCCCccCcccCcCcccCcc
Confidence            46899999999999      5677  23        36999999999 99999999996 44444               


Q ss_pred             ------CCcccCCCCCCCCc-----cccCCcceEEEEecC--CCCCCCceEEEEc-------CCCCCCCCCCcEEEEEEc
Q 031152           66 ------SDSIYGGTFPDENF-----KIKHSHAGVVSMVNS--GPDSNGSQFFITT-------VKASWLDGEHVVFGKVIQ  125 (165)
Q Consensus        66 ------~~s~~g~~~~~e~~-----~~~h~~~G~lsm~~~--~~~~~~sqF~Itl-------~~~~~ld~~~~vFGrVi~  125 (165)
                            +.++|+..+++|.+     .++|+.+|+||||+.  +||+++||||||+       .+.++||++|+|||+|++
T Consensus       255 ~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~Vve  334 (369)
T 3rfy_A          255 IMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTD  334 (369)
T ss_dssp             SCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEE
T ss_pred             ccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEec
Confidence                  34667777777643     678889999999998  8999999999999       478999999999999999


Q ss_pred             CHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152          126 GMDTVYAIEGGAGTYSGKPRKKVTIAD  152 (165)
Q Consensus       126 G~evl~~I~~~~~~~~~~P~~~i~I~~  152 (165)
                      |||||++|++      +..+.+|+|.+
T Consensus       335 GmdVVdkI~~------GD~I~sv~I~~  355 (369)
T 3rfy_A          335 NEDFLADLKV------GDVIESIQVVS  355 (369)
T ss_dssp             STTGGGGCCT------TCEEEEEEEEE
T ss_pred             CHHHHHHHhC------CCceEEEEEec
Confidence            9999999994      45567777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	9e-38
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	7e-36
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	9e-36
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-33
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	9e-33
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-31
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-31
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	7e-29
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	9e-29
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	9e-29
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-28
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	1e-28
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-28
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	2e-28
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	3e-28
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	9e-24
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-22
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	8e-21
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	4e-19
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	9e-18
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	9e-17
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-14

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  125 bits (314), Expect = 9e-38
 Identities = 80/130 (61%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 27  EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
           E G G SGKPLHFKG  FHRI+  F+IQGGD  RG+G G +SIYG  FPDENFK KH+  
Sbjct: 43  ENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGP 102

Query: 87  GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 146
           GV+SM N+GP++NGSQFF+ TVK  WLDG+HVVFG+V++G+D V A+E   G+ SGKP K
Sbjct: 103 GVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE-SNGSQSGKPVK 161

Query: 147 KVTIADSGEI 156
              IAD G++
Sbjct: 162 DCMIADCGQL 171

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  120 bits (301), Expect = 7e-36
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 1/120 (0%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS 94
           K   + G  FHR++  F++QGGD   G+G G  SIYG  F DENF++KH+  G++SM N+
Sbjct: 42  KGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANA 101

Query: 95  GPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154
           GP++NGSQFFITTV  SWLDG+HVVFG+VI GM+ V AIE   G+ SGKPR ++ IA  G
Sbjct: 102 GPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  120 bits (301), Expect = 9e-36
 Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
            GK LH+K   FHRI+  F+ QGGDI  G+G G +SIYG +F DENF +KH   G++SM 
Sbjct: 48  RGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMA 107

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           N+GP++N SQFFIT V   WLDG+HVVFGKVI+GM+ V  +E   G  SG  ++ V I D
Sbjct: 108 NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITD 166

Query: 153 SGEI 156
            GE+
Sbjct: 167 CGEL 170

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  114 bits (287), Expect = 1e-33
 Identities = 66/124 (53%), Positives = 81/124 (65%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
           SGKPLH+KG  FHR++  F+IQGGD  +GDG G +SIYGG F DE F +KH    VVSM 
Sbjct: 50  SGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMA 109

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           N GP++NGSQFFITT  A  L+  HVVFGKV+ G + V  IE        +P   V I +
Sbjct: 110 NKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 169

Query: 153 SGEI 156
            GE+
Sbjct: 170 CGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (283), Expect = 9e-33
 Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 1/126 (0%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
           +GKPLHFKG PFHRI+  F+IQGGD    +G G +SIYG  F DENF  KH   G++SM 
Sbjct: 61  TGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMA 120

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           N+G ++NGSQFFITTV    LDG+HVVFG+VI+GM     +E        KP K   IA+
Sbjct: 121 NAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILE-NVEVKGEKPAKLCVIAE 179

Query: 153 SGEIPK 158
            GE+ +
Sbjct: 180 CGELKE 185

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 1e-31
 Identities = 65/124 (52%), Positives = 83/124 (66%), Gaps = 1/124 (0%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
             K   +KG  FHR++  F+ Q GD    +G G  SIYG  FPDENF +KH   GV+SM 
Sbjct: 41  GEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMA 100

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           N+GP++NGSQFFI T+K  WLDG+HVVFG VI+GMD V  IE   G+ SG+  KK+ I D
Sbjct: 101 NAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTSKKIVITD 159

Query: 153 SGEI 156
            G++
Sbjct: 160 CGQL 163

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 65/123 (52%), Positives = 83/123 (67%)

Query: 34  GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVN 93
           G P+ +KG  FHR++  F+IQGGD V GDG G  SIY G F DENFK++HS  G++SM N
Sbjct: 51  GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMAN 110

Query: 94  SGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153
           SGP +NG QFFIT  K  WLDG+HVVFGK+I G+  +  IE      + KP+  V I+  
Sbjct: 111 SGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQC 170

Query: 154 GEI 156
           GE+
Sbjct: 171 GEM 173

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  102 bits (256), Expect = 7e-29
 Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 1/129 (0%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
            + G  FHR+++ F+IQGGD  RGDG G  SIYG  F DENFK+KH  AG +SM N+G D
Sbjct: 50  GYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGAD 109

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP 157
           +NGSQFFITTVK  WLDG HVVFGK+++GMD V  IE        +P++ V IA SG I 
Sbjct: 110 TNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 169

Query: 158 KNK-WDEER 165
            +  +  ER
Sbjct: 170 VDTPFSVER 178

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  102 bits (255), Expect = 9e-29
 Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)

Query: 27  EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
                 +  P+ +K   FHR++  F+IQGGD +  +G GS SIYG  F DENF IKH   
Sbjct: 54  TGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKE 113

Query: 87  GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQG--MDTVYAIE-GGAGTYSGK 143
           G++SM NSGP++NG QFFITT K  WLDG++VVFG++I    +  +  IE      Y  K
Sbjct: 114 GLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYK 173

Query: 144 PRKKVTIADSGEI 156
           P+  + + + GE+
Sbjct: 174 PKIPINVVECGEL 186

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 9e-29
 Identities = 50/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVN 93
           K  ++ G  FHR +  FVIQGGD   G G G +S +G  F DE    + H+  G++SM N
Sbjct: 33  KKHYYDGTIFHRSIRNFVIQGGDP-TGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMAN 91

Query: 94  SGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE-GGAGTYSGKPRKKVTIAD 152
           SGP+SN SQFFIT    ++LD +H +FG+V+ G D + A+E   +   + +P++++ I D
Sbjct: 92  SGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI-D 150

Query: 153 SGEIPKNKWDE 163
           +  +  + ++E
Sbjct: 151 ATTVFVDPYEE 161

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  101 bits (253), Expect = 1e-28
 Identities = 59/122 (48%), Positives = 77/122 (63%), Gaps = 3/122 (2%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
            ++   FHRI+  F+IQGGD  RG+G G  SIYG  F DENF  KH   G++SM N+GP+
Sbjct: 50  GYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPN 109

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQ--GMDTVYAIE-GGAGTYSGKPRKKVTIADSG 154
           +NGSQFFITT   SWLDG+HVVFG+V        V  IE  G+ + S +   +  I + G
Sbjct: 110 TNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 169

Query: 155 EI 156
           E+
Sbjct: 170 EL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-28
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 1/121 (0%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS 94
           K   FKG  FHRI+  F+ QGGD    +G G  SIYG  F DENF +KH+  G++SM NS
Sbjct: 42  KGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANS 101

Query: 95  GPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154
           GP++NGSQFF+T  K  WLDG+HVVFG+V +G+D +  IE   G+  GKP++KV IAD G
Sbjct: 102 GPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCG 160

Query: 155 E 155
           E
Sbjct: 161 E 161

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  102 bits (254), Expect = 2e-28
 Identities = 71/133 (53%), Positives = 87/133 (65%), Gaps = 1/133 (0%)

Query: 33  SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMV 92
             K   +KG  FHR++  F+IQGGD    DG G  SIYG TFPDENFK+KH   G VSM 
Sbjct: 46  GEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMA 105

Query: 93  NSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
           N+GPD+NGSQFFIT  K +WLDG+HVVFGKV+ GM  V++IE  A     +P    TI +
Sbjct: 106 NAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVN 165

Query: 153 SGEIP-KNKWDEE 164
           SG+I  K  +  E
Sbjct: 166 SGKIDVKTPFVVE 178

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-28
 Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
           ++ G  FHRI+  F+IQGGD   G G+G  SIYG  F DE +  +K + AG+++M N+GP
Sbjct: 47  YYNGTKFHRIIKDFMIQGGD-PTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           D+NGSQFF+T     WLDG+H +FG+V QG+  V  +         +P   V I
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  100 bits (250), Expect = 3e-28
 Identities = 63/122 (51%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS 94
               +KG  FHR++  F+IQGGD    DG G  SIYG  F DEN KI     G VSM N+
Sbjct: 46  NGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKI-KHFVGAVSMANA 104

Query: 95  GPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154
           GP+SNGSQFF+TT    WLDG HVVFGKV++GMD V  +E      + KP+K V I D G
Sbjct: 105 GPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

Query: 155 EI 156
            +
Sbjct: 165 VL 166

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 9e-24
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS 94
              ++ G  FHR + GF++Q GD       G+         + +  +KH+  GVVSM N+
Sbjct: 33  ASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANN 92

Query: 95  GPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGA-GTYSGKPRKKVTIAD 152
           GP++NGSQFFIT  K   LD ++ VFGKVI G++T+  +E       + +P   V I D
Sbjct: 93  GPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 85.7 bits (211), Expect = 3e-22
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 26  GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
             +          + G  FHR++ GF+IQGGD     G G          + + +++   
Sbjct: 42  STQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP---TGTGRGGPGYKFADEFHPELQFDK 98

Query: 86  AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYSGK 143
             +++M N+GP +NGSQFFIT  K   L+  H +FG+VI  +    V AI   A   + +
Sbjct: 99  PYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDR 158

Query: 144 PRKKVTI 150
           P   V I
Sbjct: 159 PTDPVVI 165

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 81.8 bits (201), Expect = 8e-21
 Identities = 40/117 (34%), Positives = 60/117 (51%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
            +    FHR++  FVIQGGD       G          + N ++KH+ AG++SM N+GP+
Sbjct: 52  FYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPN 111

Query: 98  SNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154
           +N SQFFIT      LDG+H +F +V + M  +  I     T + KP   + I  + 
Sbjct: 112 TNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 4e-19
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS 94
           +  ++ G  FHRI+ GF+IQ GD       G     G    + +  ++H     +SM N+
Sbjct: 42  RNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANA 101

Query: 95  GPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTIAD 152
           G ++NGSQFFIT V   WLD +H VFG+V +GM+ V  I        + KP + V+I +
Sbjct: 102 GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 73.4 bits (179), Expect = 9e-18
 Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 2/114 (1%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAG-VVSMVNSGP 96
           ++    FHR++  F++Q GD   GDG G +SI+G  F DE F   +     +VSM N GP
Sbjct: 37  YYNNCIFHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGP 95

Query: 97  DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTI 150
           ++NGSQFFITTV   WLD +H VFGKV QG   V  IE        KP + + I
Sbjct: 96  NTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKI 149

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 71.1 bits (173), Expect = 9e-17
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 35  KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVN 93
           +   +    FHR+++GF+IQGG    G  +           +E N  +K++   +     
Sbjct: 32  REGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNTRGTLAMART 88

Query: 94  SGPDSNGSQFFITTVK--------ASWLDGEHVVFGKVIQGMDTVYAIE----GGAGTYS 141
             P S  +QFFI  V          S     + VF +V+ GMD V  I+    G +G + 
Sbjct: 89  QAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQ 148

Query: 142 GKPRKKVTI 150
             P++ V I
Sbjct: 149 DVPKEDVII 157

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 65.0 bits (157), Expect = 2e-14
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 38  HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNS-GP 96
            +    FHR++ GF+IQGG       +           +E      +  G ++M  +   
Sbjct: 40  FYNNTTFHRVIPGFMIQGGGF---TEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADK 96

Query: 97  DSNGSQFFITTVKASWLD-----GEHVVFGKVIQGMDTVYAIE----GGAGTYSGKPRKK 147
           DS  SQFFI     ++LD       + VFGKV++GMD    I        G Y   P K 
Sbjct: 97  DSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKP 156

Query: 148 VTIADSGEIP 157
           V I  +  +P
Sbjct: 157 VVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=4.9e-43  Score=261.82  Aligned_cols=149  Identities=56%  Similarity=0.985  Sum_probs=139.2

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      .+||++..+....++.+||+++.|||++|++++|+|++...++.++...++..+++|....
T Consensus        18 G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~e~~~~   97 (172)
T d2igva1          18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKE   97 (172)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCCCcccCCCccCcccccc
Confidence            4899999999999      7899888877777788999999999999999999999998889998899999999998888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      .|+.+|+|||++.++++++|||||++.++|+||++|+|||||++|||||++|+.. .+++++|+++|+|++||+|+
T Consensus        98 ~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~-~~~~g~P~~~i~I~~cG~l~  172 (172)
T d2igva1          98 KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQLK  172 (172)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTT-CCTTSCCSSCEEEEEEEEEC
T ss_pred             ccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcC-CCCCCCCCCCeEEEeccccC
Confidence            8989999999999999999999999999999999999999999999999999854 56789999999999999985

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=1e-41  Score=254.86  Aligned_cols=149  Identities=48%  Similarity=0.793  Sum_probs=136.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCC-CCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~-~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+|+||.|.||      +.||++..+.+ ..++..||+++.|||++|++++|+|+....++.++.+.++....++...
T Consensus        18 G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~~~   97 (174)
T d1a33a_          18 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFV   97 (174)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCCCSC
T ss_pred             eEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCCCCCCccCccccccccc
Confidence            3899999999999      77888776543 2356789999999999999999999998888888878887777778888


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      ..|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++..++.+++|.++|+|.+||+|
T Consensus        98 ~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (174)
T d1a33a_          98 MKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  173 (174)
T ss_dssp             SCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred             cccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.7e-42  Score=259.91  Aligned_cols=151  Identities=48%  Similarity=0.798  Sum_probs=137.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.|.||      +.||++.+       ..||+++.|||++|+|++|+|+...+++.++.+.++..+.++....
T Consensus        21 G~i~IeL~~d~aP~tv~nF~~l~~~g~-------~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~~~~~~~~~~~~   93 (182)
T d1h0pa_          21 GRIVIGLFGKTVPKTATNFIELAKKPK-------GEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKL   93 (182)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHSCT-------TTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eEEEEEECCCCChHHHHHHHHHHHhcc-------cCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCCCCccCcccccc
Confidence            3899999999999      67775433       3369999999999999999999998888888888899999998888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec-CCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP-KNK  160 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~-~~~  160 (165)
                      .|+.+|+++|++.++++++|||||++.++|+||++|+|||||++|||+|++|++..++++++|.++|+|.+||+|. +..
T Consensus        94 ~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~cG~l~~~~p  173 (182)
T d1h0pa_          94 KHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTP  173 (182)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEEEEEEEEEEE
T ss_pred             cccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEECCeEeCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999998 556


Q ss_pred             CCCCC
Q 031152          161 WDEER  165 (165)
Q Consensus       161 ~~~e~  165 (165)
                      |+.||
T Consensus       174 ~~~~~  178 (182)
T d1h0pa_         174 FSVER  178 (182)
T ss_dssp             EECCS
T ss_pred             Ccccc
Confidence            66554

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-41  Score=249.39  Aligned_cols=140  Identities=49%  Similarity=0.829  Sum_probs=128.4

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+|+||.+.||      +.||...++       .+|+++.|||++|++++|+|++....+.++.+.++..++++....
T Consensus        16 G~i~ieL~~~~aP~tv~nF~~L~~~~~~-------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~   88 (161)
T d2r99a1          16 GRIQMLLRSDVVPMTAENFRCLCTHEKG-------FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFIL   88 (161)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTS-------CCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eEEEEEEcCCCCcHHHHHHHHhhhhccc-------cccCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcccccccccc
Confidence            3899999999999      668866543       369999999999999999999988888888888888888888899


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE  155 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~  155 (165)
                      +|+.+|+|||++.++++++|||||++.++|+||++|+|||||++|||||++|+ ...+++++|.++|+|++||+
T Consensus        89 ~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~-~~~~~~~~P~~~i~I~~CGe  161 (161)
T d2r99a1          89 KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE  161 (161)
T ss_dssp             CCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHH-TTCCTTCCCSSCEEEEEEEE
T ss_pred             ccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHH-ccCCCCCcCCCCEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999998 55678999999999999995

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.8e-41  Score=251.71  Aligned_cols=147  Identities=48%  Similarity=0.818  Sum_probs=132.9

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||++.||      ..||++.... ...+.+||+++.|||+++++++|+|+....++.++...++..++++...+
T Consensus        18 G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T d1qnga_          18 GRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNM   96 (170)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             cEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCCCCCcccCCCccccccccc
Confidence            4899999999999      6788765433 23467789999999999999999999988888888888899999998999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      .|+.+|+|||++.++++++|||||+++++|+||++|+|||||++|||+|++|++.. .++++|.++|+|++||+|
T Consensus        97 ~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~-~~~g~P~~~i~I~~CG~l  170 (170)
T d1qnga_          97 KHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEG-AKSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTCCCSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcC-CCCcCCccCEEEEeeEcC
Confidence            99999999999999999999999999999999999999999999999999999654 457899999999999986

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.7e-41  Score=249.35  Aligned_cols=141  Identities=50%  Similarity=0.881  Sum_probs=130.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      +.||++..|+       +|+++.|||++|++++|+|++...++.++.+.+...+.+|+..+
T Consensus        16 G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~   88 (162)
T d2cfea1          16 GTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQL   88 (162)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCccccccCCC
Confidence            4899999999999      6688776654       49999999999999999999998888888888888999999999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      +|+.+|+|||++.++++++|||||++.+.|+||++|+|||||++|||||++|+ ...+++++|.++|+|.+|||.
T Consensus        89 ~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~-~~~~~~~~P~~~i~I~~cgv~  162 (162)
T d2cfea1          89 KHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCGVC  162 (162)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHH-TTCCTTSCCSSCEEEEEEEEC
T ss_pred             CCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHh-cCCCCCCCCCCCeEEEeeEcC
Confidence            99999999999999999999999999999999999999999999999999998 566789999999999999983

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3e-41  Score=254.18  Aligned_cols=143  Identities=52%  Similarity=0.837  Sum_probs=133.4

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+|+||.|.||      ..||++.++       .+|+++.|||++|++++|+|++...++.++.+.++..+++++...
T Consensus        22 G~ivieL~~d~aP~tv~nF~~l~~~~k~-------~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~   94 (182)
T d2rmca_          22 GRIVIGLFGNVVPKTVENFVALATGEKG-------YGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKL   94 (182)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHTTTS-------CSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTBSCBCCCCCCS
T ss_pred             cEEEEEEcCCCCcHHHHHHHHhhhcCCC-------ccccCceeeeeecCceEEcCCCCCCCCCCCCCCcCCccccccccc
Confidence            3899999999999      678866543       369999999999999999999988888888888898999998888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      .|+.+|+|||++.++++++|||||+++++++||++|+|||||++|||||++|++..++.+++|.++|+|.+||+|+
T Consensus        95 ~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~~g~l~  170 (182)
T d2rmca_          95 KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKID  170 (182)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEE
T ss_pred             ccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEEEeeEEe
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999996

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=6e-41  Score=249.03  Aligned_cols=141  Identities=50%  Similarity=0.834  Sum_probs=127.1

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      ..||.+..+.       +|+++.|||++|++++|+|+....++.++...++..++++....
T Consensus        20 G~i~ieL~~~~aP~t~~nF~~l~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~   92 (166)
T d1xo7a_          20 GRVVIGLFGNDVPKTVENFKQLASGENGF-------GYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKI   92 (166)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             cEEEEEECCCCChHHHHHHHHhhcccccc-------cccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCCCcccccccccc
Confidence            3899999999999      7788766554       39999999999999999999988888887777777776666555


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      .| .+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++.+++.+++|.++|+|.+||+|
T Consensus        93 ~~-~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_          93 KH-FVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL  166 (166)
T ss_dssp             CC-CTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             cc-cccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence            44 699999999999999999999999999999999999999999999999999999999999999999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-40  Score=253.27  Aligned_cols=152  Identities=49%  Similarity=0.809  Sum_probs=136.9

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCC-CCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~-~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~   80 (165)
                      =||+|+||.+.||      +.||+++.+.. ..++..||+|+.|||++|++++|+|+.....+.++...++..+++|...
T Consensus        29 G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~  108 (195)
T d1ihga2          29 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH  108 (195)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCC
T ss_pred             eEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCCCCccCCCCcccccccC
Confidence            4899999999999      67898776532 3456778999999999999999999998888888888888889999999


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK  160 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~  160 (165)
                      ..|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++..+ ++++|.++|+|++||+|+...
T Consensus       109 ~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t-~~~~P~~~i~I~~cG~l~~~~  187 (195)
T d1ihga2         109 YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGELKEGD  187 (195)
T ss_dssp             BCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCE-ETTEESSCEEEEEEEEECTTC
T ss_pred             cccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCC-CCCCcCCCeEEEECcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999996554 579999999999999998654

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=246.25  Aligned_cols=142  Identities=36%  Similarity=0.483  Sum_probs=125.6

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =+|+|+||++.||      +.||+          ..||+++.|||++|+++||+||+... ..++...++..++.|.. .
T Consensus        10 G~i~ieL~~~~aP~tv~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~~~~   78 (159)
T d2ok3a1          10 GDIKIEVFCERTPKTCENFLALCA----------SNYYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEYSEY   78 (159)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCCCTT
T ss_pred             eEEEEEEcCCCChHHHHHHHHHHh----------hhcccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccccccC
Confidence            4799999999999      67773          23699999999999999999998644 44555667777777754 6


Q ss_pred             ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC-CCCCCcceEEeeeeeecCC
Q 031152           81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY-SGKPRKKVTIADSGEIPKN  159 (165)
Q Consensus        81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~-~~~P~~~i~I~~cg~l~~~  159 (165)
                      ++|+++|+|||++.++++++|||||++++.|+||++|+|||||++||++|++|++..+++ +++|..+|+|.+|.+|.+|
T Consensus        79 ~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~~P  158 (159)
T d2ok3a1          79 LKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP  158 (159)
T ss_dssp             CCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCS
T ss_pred             CCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEeCC
Confidence            889999999999999999999999999999999999999999999999999999988875 5789999999999999887


Q ss_pred             C
Q 031152          160 K  160 (165)
Q Consensus       160 ~  160 (165)
                      +
T Consensus       159 f  159 (159)
T d2ok3a1         159 F  159 (159)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-40  Score=246.17  Aligned_cols=142  Identities=48%  Similarity=0.828  Sum_probs=128.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      +.||.+.+       ..+|+++.|||++|++++|+|++....+.++...++..++++...+
T Consensus        17 G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~~~~~   89 (164)
T d2z6wa1          17 GRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTL   89 (164)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCCCCS
T ss_pred             eEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCCCCCccccCCcCCcccccc
Confidence            4899999999999      66775443       3469999999999999999999988888888888888888888888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP  157 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~  157 (165)
                      .|+.+|+|||++.++++++|||||++.++|+||++|+|||+|++|||||++|++.. +++++|.++|+|.+||+|.
T Consensus        90 ~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~-~~~~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1          90 KHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFG-SKSGRTSKKIVITDCGQLS  164 (164)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTC-CTTSCCSSCEEEEEEEECC
T ss_pred             ccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCC-CCCCCCCCCEEEEeCeecC
Confidence            88899999999999999999999999999999999999999999999999999766 4578999999999999984

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=249.54  Aligned_cols=144  Identities=34%  Similarity=0.547  Sum_probs=130.6

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      ||+|+||.+.||      ..||          +..||+|+.|||++|++++|+||+. ..+.++.+.++..+++|.. .+
T Consensus        11 ~i~IeL~~~~aP~tv~nF~~L~----------~~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~~~~l   79 (178)
T d1zkca1          11 DLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNL   79 (178)
T ss_dssp             EEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTC
T ss_pred             EEEEEEcCCCChHHHHHHHHHH----------hcCCcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCcccccc
Confidence            799999999999      6677          2336999999999999999999985 5677778888899998855 68


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC-CCCCCCcceEEeeeeeecCCC
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGT-YSGKPRKKVTIADSGEIPKNK  160 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~-~~~~P~~~i~I~~cg~l~~~~  160 (165)
                      +|+.+|+|||+++++++++|||||+++++++||++|+|||||++|||+|++|++..++ .+++|.++|+|.+|.+|.+++
T Consensus        80 ~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il~~pf  159 (178)
T d1zkca1          80 SHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDPY  159 (178)
T ss_dssp             CSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECTT
T ss_pred             CCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEEcCCc
Confidence            8989999999999999999999999999999999999999999999999999998886 578999999999999999987


Q ss_pred             CCC
Q 031152          161 WDE  163 (165)
Q Consensus       161 ~~~  163 (165)
                      .|.
T Consensus       160 ~~~  162 (178)
T d1zkca1         160 EEA  162 (178)
T ss_dssp             HHH
T ss_pred             chh
Confidence            654

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=3.9e-40  Score=245.96  Aligned_cols=147  Identities=46%  Similarity=0.791  Sum_probs=128.7

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+|+||.+.||      +.||+.  ++...++...|+++.|||++|++++|+|+...+.+......+...++++....
T Consensus        21 G~i~ieL~~~~aP~tv~nF~~L~~~--~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~~~~~~~~~~~~~~~   98 (173)
T d1qoia_          21 GRMKIELFADVVPKTAENFRQFCTG--EFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKL   98 (173)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHS--CCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCCCCS
T ss_pred             eEEEEEEcCCCCcHHHHHHHHhhcc--cccccCCCCCcCCcccceeccceeeccCCcccCCcceeecccCCccccccccc
Confidence            3899999999999      667743  32112222339999999999999999999987776666666777788888878


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l  156 (165)
                      .|+.+|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+++++++|.++|+|.+||+|
T Consensus        99 ~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (173)
T d1qoia_          99 RHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  173 (173)
T ss_dssp             CCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             ccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence            888899999999999999999999999999999999999999999999999999999999999999999999986

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.4e-39  Score=236.98  Aligned_cols=136  Identities=40%  Similarity=0.607  Sum_probs=124.2

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      +|+||||.+.||      +.||.  .        .||+|+.|||++|++++|+||+. +.+.++.+.++..+++|.. .+
T Consensus        12 ~i~ieL~~~~aP~tv~nF~~l~~--~--------g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~   80 (155)
T d2fu0a1          12 DIHISLFYKECKKTVQNFSVHSI--N--------GYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHL   80 (155)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHHH--T--------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTB
T ss_pred             EEEEEEcCCCChHHHHHHhhHhh--C--------CccccceeeeeeecceeeccCCC-CCCcCCcccCCCcccccccccc
Confidence            799999999999      66773  2        36999999999999999999985 5566777888888988866 68


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE  155 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~  155 (165)
                      .|+++|+++|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+++++++|+++|+|.+|.+
T Consensus        81 ~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          81 NHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             CSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             ccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            89989999999999999999999999999999999999999999999999999999999999999999999964

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3.3e-39  Score=243.67  Aligned_cols=147  Identities=41%  Similarity=0.690  Sum_probs=132.7

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.|.||      +.||++..+.  ..+...|+|+.|||++|++++|+|+.....+......++..++++....
T Consensus        31 G~I~ieL~~d~aP~tv~nF~~L~~~~~~~--~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~  108 (186)
T d1z81a1          31 GKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDI  108 (186)
T ss_dssp             EEEEEEECTTTCHHHHHHHHHHHHTCCBS--SSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCCCCS
T ss_pred             eEEEEEEcCCCChHHHHHHHHHHhccccc--CCcccccCCCeeeeeecceeeecCCccccCCcccccccCCccccccccc
Confidence            4899999999999      7788765432  2344569999999999999999999988778888888888899999999


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcC--HHHHHHHhcCCCCC-CCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQG--MDTVYAIEGGAGTY-SGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G--~evl~~I~~~~~~~-~~~P~~~i~I~~cg~l  156 (165)
                      .|+.+|+++|++.++++++|||||+++++|+||++|+|||||++|  ||+|++|+..++++ .++|..+|+|++||+|
T Consensus       109 ~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         109 KHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  186 (186)
T ss_dssp             CCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             ccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEeCCcC
Confidence            999999999999999999999999999999999999999999998  99999999888775 7899999999999986

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.3e-38  Score=237.11  Aligned_cols=135  Identities=39%  Similarity=0.582  Sum_probs=121.7

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      +|+||||.+.||      ..||  +.        +||+++.|||+++++++|+|++. +...++.+.+...++.|.. .+
T Consensus        27 ~i~IeL~~d~aP~tv~nF~~L~--~~--------g~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~~~e~~~~l   95 (169)
T d2b71a1          27 DFEVELYWYHSPKTCLNFYTLC--EM--------GFYDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKEL   95 (169)
T ss_dssp             EEEEEECTTTSHHHHHHHHHHH--HT--------TTTTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBCCCCCTTC
T ss_pred             eEEEEEeCCCCcHHHHHHHHHh--hC--------CccceeeeccccceeeEeccccc-cccCCCcccccccccccccccc
Confidence            799999999999      6677  33        36999999999999999999986 4445566667777888754 68


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG  154 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg  154 (165)
                      +|.++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.+++++++|..+|+|.+|+
T Consensus        96 ~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          96 KHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             CCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999986

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=235.86  Aligned_cols=135  Identities=39%  Similarity=0.678  Sum_probs=122.5

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~   81 (165)
                      +|+||||.+.||      ..||  +.        +||+++.|||+++++++|+||+. ..+.++.+.++..+++|.. .+
T Consensus        22 ~i~ieL~~~~aP~tv~nF~~L~--~~--------g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~e~~~~~   90 (166)
T d1xwna1          22 IIVLELYWKHAPKTCKNFAELA--RR--------GYYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDL   90 (166)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHH--HH--------TSSTTCCEEEEETTTEEEECCST-TTTSSCCCSSCSCCCCCCCTTC
T ss_pred             eEEEEEcCCCChHHHHHHHHHH--hc--------CCcCceeeeEEcccEEEEeCCCC-CCCCCCccCCCCccccccCCCC
Confidence            789999999999      6677  23        36999999999999999999985 5666777788888888854 78


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG  154 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg  154 (165)
                      .|+.+|+|||+++++++++|||||++++.++||++|+|||+|++|||||++|++.+++.+++|.++|+|.++-
T Consensus        91 ~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a~  163 (166)
T d1xwna1          91 KFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAY  163 (166)
T ss_dssp             CSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEEE
T ss_pred             CCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEee
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999864

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=7.5e-39  Score=238.80  Aligned_cols=142  Identities=42%  Similarity=0.727  Sum_probs=99.8

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI   81 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~   81 (165)
                      =||+||||.+.||      +.||+...+.       .|+++.|||++|++++|+||+...++.++...++..+.++...+
T Consensus        21 G~i~IeL~~~~aP~tv~nF~~l~~~~~~~-------~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d2c3ba1          21 GRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSR   93 (171)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHHHSCTTT-------SSTTCBCCEEETTTEEEECC----------------------CH
T ss_pred             eEEEEEEcCCCChHHHHHHHHHhhhcccc-------cccCceeeEEEEEEeeEcCCccCCCCCCCCcCCCCccccccccc
Confidence            4899999999999      6677654432       39999999999999999999988888877777788888888888


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCC-CCCCCcceEEeeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ--GMDTVYAIEGGAGTY-SGKPRKKVTIADSGEI  156 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~--G~evl~~I~~~~~~~-~~~P~~~i~I~~cg~l  156 (165)
                      .|+.+|+|||++.++++++|||||++++.|+||++|+|||||++  ||+||++|++..++. +.+|..+|+|.+||+|
T Consensus        94 ~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1          94 KHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             HHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             cCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence            89899999999999999999999999999999999999999994  999999999877766 4479999999999987

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-37  Score=229.07  Aligned_cols=136  Identities=27%  Similarity=0.343  Sum_probs=115.7

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK   82 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~   82 (165)
                      +|+|+||.+.||      +.||+          ..||+|+.|||++|+|++|+|+.....+.+   .++.++++|.....
T Consensus        15 ~i~ieL~~~~aP~tv~nF~~L~~----------~~~Y~g~~fhRv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~~   81 (166)
T d1v9ta_          15 NIELELDKQKAPVSVQNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQQK---KPNPPIKNEADNGL   81 (166)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEESSBCTTCCBC---CCCCCBCCCGGGSC
T ss_pred             eEEEEEeCCCChHHHHHHHHHhh----------CCccccceeeEEEEEeecccCCcCCccccc---CCCCCccccccccc
Confidence            799999999999      67773          336999999999999999999986554443   34777888876544


Q ss_pred             CCcceEEEEecC-CCCCCCceEEEEcCCCCCCCCC-----CcEEEEEEcCHHHHHHHhcCCCCCC----CCCCcceEEee
Q 031152           83 HSHAGVVSMVNS-GPDSNGSQFFITTVKASWLDGE-----HVVFGKVIQGMDTVYAIEGGAGTYS----GKPRKKVTIAD  152 (165)
Q Consensus        83 h~~~G~lsm~~~-~~~~~~sqF~Itl~~~~~ld~~-----~~vFGrVi~G~evl~~I~~~~~~~~----~~P~~~i~I~~  152 (165)
                      |+.+|.|+|++. ++++++|||||++.+.++||..     |+|||+|++|||+|++|++.+++..    ++|.++|+|.+
T Consensus        82 ~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  161 (166)
T d1v9ta_          82 RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS  161 (166)
T ss_dssp             CCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEE
T ss_pred             cccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeEEEE
Confidence            556999999884 6999999999999999998864     7999999999999999998877654    48999999999


Q ss_pred             eeeec
Q 031152          153 SGEIP  157 (165)
Q Consensus       153 cg~l~  157 (165)
                      |++|+
T Consensus       162 ~~vlp  166 (166)
T d1v9ta_         162 ATVLP  166 (166)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            99985

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.1e-36  Score=226.67  Aligned_cols=143  Identities=32%  Similarity=0.488  Sum_probs=121.8

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCC-----CCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCC
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGA-----SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE   77 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~-----~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e   77 (165)
                      ||+||||+|.||      +.||.+.++.+.     ..+..||+++.|||+++++++|+|++.. .+.++.   ...++.|
T Consensus        14 ~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~~~~e   89 (171)
T d1w74a_          14 DIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYKFADE   89 (171)
T ss_dssp             EEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCCBCCC
T ss_pred             EEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccccccc
Confidence            899999999999      778877654432     2345689999999999999999999863 233322   3344555


Q ss_pred             -CccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEE--cCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152           78 -NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYSGKPRKKVTIADSG  154 (165)
Q Consensus        78 -~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi--~G~evl~~I~~~~~~~~~~P~~~i~I~~cg  154 (165)
                       ...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||+  +|||||++|++.+++++++|..+|+|.+|.
T Consensus        90 ~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~~v~  169 (171)
T d1w74a_          90 FHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESIT  169 (171)
T ss_dssp             CCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEE
T ss_pred             cCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEEEEE
Confidence             45788999999999999999999999999999999999999999999  599999999999999999999999999987


Q ss_pred             e
Q 031152          155 E  155 (165)
Q Consensus       155 ~  155 (165)
                      +
T Consensus       170 i  170 (171)
T d1w74a_         170 I  170 (171)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=223.69  Aligned_cols=136  Identities=35%  Similarity=0.556  Sum_probs=116.2

Q ss_pred             EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCC-Cccc
Q 031152            9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKI   81 (165)
Q Consensus         9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e-~~~~   81 (165)
                      +|+|+||.+.||      ++||  +        .+||+|+.|||+++++++|+|++......+.... ...+..+ ...+
T Consensus        20 ~i~ieL~~~~aP~tv~nF~~l~--~--------~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~-~~~~~~~~~~~~   88 (164)
T d2a2na1          20 DIHTKLFPVECPKTVENFCVHS--R--------NGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIW-GGEFEDEFHSTL   88 (164)
T ss_dssp             EEEEEECTTTCHHHHHHHHHHH--H--------TTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTT-SSCBCCCCCTTC
T ss_pred             EEEEEEcCCCChHHHHHHHHHH--h--------CCCcccceeeEEeeeeeEeecccccccCCCceee-eccccccccccc
Confidence            799999999999      5566  2        3469999999999999999999864443333333 3344444 5578


Q ss_pred             cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCC-CCCCCcceEEeeeee
Q 031152           82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY-SGKPRKKVTIADSGE  155 (165)
Q Consensus        82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~-~~~P~~~i~I~~cg~  155 (165)
                      .|+++|+++|++.++++++|||||++++.|+||++|+|||+|++||++|++|++.+++. +++|..+|+|.+|.+
T Consensus        89 ~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~i  163 (164)
T d2a2na1          89 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  163 (164)
T ss_dssp             CSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             ccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999988875 589999999999975

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-35  Score=219.44  Aligned_cols=135  Identities=27%  Similarity=0.377  Sum_probs=113.0

Q ss_pred             EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152            8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K   80 (165)
Q Consensus         8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~   80 (165)
                      =+|+||||.+.||      ++||          +.+||+|+.|||++|++++|+||+....+.+   .++.++++|.. .
T Consensus         9 G~i~ieL~~~~aP~t~~nF~~l~----------~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~   75 (164)
T d1lopa_           9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNG   75 (164)
T ss_dssp             EEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCCCCSS
T ss_pred             eEEEEEEcCCCCHHHHHHHHHHH----------HccCcCCceeeEEcCCceeeeeccccCCcCC---ccCCCcccccccc
Confidence            3799999999999      6677          3346999999999999999999875443332   34667888855 5


Q ss_pred             ccCCcceEEEEecC-CCCCCCceEEEEcCCC--------CCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCC----CCCcc
Q 031152           81 IKHSHAGVVSMVNS-GPDSNGSQFFITTVKA--------SWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG----KPRKK  147 (165)
Q Consensus        81 ~~h~~~G~lsm~~~-~~~~~~sqF~Itl~~~--------~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~----~P~~~  147 (165)
                      ++|. +|.|+|+++ ++++++|||||++.+.        |++|++|+|||+|++|||+|++|++.++++.+    +|.++
T Consensus        76 ~~h~-~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~  154 (164)
T d1lopa_          76 LKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKED  154 (164)
T ss_dssp             CCCC-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSC
T ss_pred             ccce-eeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCC
Confidence            5564 888899875 6999999999999865        78999999999999999999999988887654    89999


Q ss_pred             eEEeeeeee
Q 031152          148 VTIADSGEI  156 (165)
Q Consensus       148 i~I~~cg~l  156 (165)
                      |+|.++.+.
T Consensus       155 v~I~~v~I~  163 (164)
T d1lopa_         155 VIIESVTVS  163 (164)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEEEEe
Confidence            999999775