Citrus Sinensis ID: 031165

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHccccEEEEEEcccEEEccccccccccEEEEEEEcccEEEEEEEcccccEEEcEEEEEEEcEEEccccHHHHHHHHHHcHHHHHHHHHcccEEEEEccccccccEEEEEccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHccHHHHcccccHHHHHEEEEcccEEEEEEcccEccccccEEEccccEEEEEEcccEEEEEEEEEEccEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEcccccEEEccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mpaghglrsrtrdlfarpfrkkgyiplstylrtykigdyvdvkvngavhkgmphkfyhgrtgrvWNVTKRAIGVEINKQVGNRIIKKRIHVRVehvqpsrcteeFKLRKKKNDELKADAKARGEvistkrqpkgpkpgfmvegatletvtpipydvvndlkggy
Flexible Loop (DISEMBL)
mpaghglrsrtrdlfarpfrkkgyiplstylrtyKIGDYVDVKVNGAVHKgmphkfyhgrtgrvWNVTKRAIGveinkqvgnriikkrihvrvehvqpsrcteefklrkkkndelkadakargevistkrqpkgpkpgfmvegatletvtpipydvvndlkggy
Low Complexity Region (SEG)
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Disordered region (IsUnstruct)
*************LFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQ********************************************EGATLETVTPIPYDVV*******
Disordered Region (DISOPRED)
************D**ARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGG*
Disordered Region (DISEMBL)
**********TRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Disordered Region (DISPRO)
********SRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9FDZ9	164	60S ribosomal protein L21	yes	no	1.0	1.0	0.902	5e-86
Q43291	164	60S ribosomal protein L21	yes	no	1.0	1.0	0.902	8e-86
O82574	161	60S ribosomal protein L21	N/A	no	0.945	0.962	0.594	8e-44
Q02753	160	60S ribosomal protein L21	yes	no	0.945	0.968	0.528	2e-43
Q12672	160	60S ribosomal protein L21	yes	no	0.945	0.968	0.522	5e-43
Q54X53	160	60S ribosomal protein L21	yes	no	0.957	0.981	0.528	5e-42
O42706	160	60S ribosomal protein L21	yes	no	0.945	0.968	0.522	3e-41
Q9UUC1	160	60S ribosomal protein L21	yes	no	0.945	0.968	0.522	3e-41
P46778	160	60S ribosomal protein L21	yes	no	0.957	0.981	0.490	1e-37
Q6QN05	160	60S ribosomal protein L21	N/A	no	0.957	0.981	0.484	3e-37

>sp|Q9FDZ9|RL212_ARATH 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1

 Score =  316 bits (809), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 148/164 (90%), Positives = 159/164 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q43291|RL211_ARATH 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2

 Score =  315 bits (807), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 148/164 (90%), Positives = 158/164 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           A GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

Arabidopsis thaliana (taxid: 3702)

>sp|O82574|RL21_CYAPA 60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1

 Score =  176 bits (445), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 115/158 (72%), Gaps = 3/158 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R K+ND++K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
            A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

Cyanophora paradoxa (taxid: 2762)

>sp|Q02753|RL21A_YEAST 60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 113/157 (71%), Gaps = 2/157 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12672|RL21B_YEAST 60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1

 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 2/157 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54X53|RL21_DICDI 60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1

 Score =  169 bits (429), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 2/159 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 157
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

Dictyostelium discoideum (taxid: 44689)

>sp|O42706|RL21B_SCHPO 60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl21b PE=2 SV=2

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 2/157 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 155
           A+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UUC1|RL21A_SCHPO 60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl21a PE=3 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 2/157 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 155
           A+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P46778|RL21_HUMAN 60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 2/159 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1   MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK
Sbjct: 61  TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 157
            +G  +  KRQP  P+    V   G   E + PIPY+ +
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159

Homo sapiens (taxid: 9606)

>sp|Q6QN05|RL21_CHILA 60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 2/159 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M    G R  TR +F+RP+RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1   MTNTKGKRRGTRYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK
Sbjct: 61  TGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 157
            +G  +  KRQP  P+    V   G   E + PIPY+ +
Sbjct: 121 EKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFM 159

Chinchilla lanigera (taxid: 34839)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
297721793	164	Os03g0141000 [Oryza sativa Japonica Grou	1.0	1.0	0.951	7e-87
115482412	164	Os10g0465800 [Oryza sativa Japonica Grou	1.0	1.0	0.945	2e-86
255580702	164	60S ribosomal protein L21, putative [Ric	1.0	1.0	0.939	4e-86
242034227	164	hypothetical protein SORBIDRAFT_01g01984	1.0	1.0	0.945	5e-86
224091577	164	predicted protein [Populus trichocarpa]	1.0	1.0	0.939	5e-86
223946149	164	unknown [Zea mays] gi|413956990|gb|AFW89	1.0	1.0	0.945	1e-85
3885884	164	60S ribosomal protein L21 [Oryza sativa	1.0	1.0	0.939	1e-85
224138146	164	predicted protein [Populus trichocarpa]	1.0	1.0	0.932	2e-85
226501696	164	LOC100281780 [Zea mays] gi|195616444|gb|	1.0	1.0	0.939	3e-85
224075415	164	predicted protein [Populus trichocarpa]	1.0	1.0	0.939	4e-85

>gi|297721793|ref|NP_001173260.1| Os03g0141000 [Oryza sativa Japonica Group] gi|108706108|gb|ABF93903.1| 60S ribosomal protein L21, putative, expressed [Oryza sativa Japonica Group] gi|125542345|gb|EAY88484.1| hypothetical protein OsI_09955 [Oryza sativa Indica Group] gi|125584866|gb|EAZ25530.1| hypothetical protein OsJ_09354 [Oryza sativa Japonica Group] gi|255674192|dbj|BAH91988.1| Os03g0141000 [Oryza sativa Japonica Group]

 Score =  324 bits (831), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/164 (95%), Positives = 162/164 (98%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEE +LRK KND+LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115482412|ref|NP_001064799.1| Os10g0465800 [Oryza sativa Japonica Group] gi|13489167|gb|AAK27801.1|AC022457_4 60S ribosomal protein L21 [Oryza sativa Japonica Group] gi|31432571|gb|AAP54186.1| 60S ribosomal protein L21, putative, expressed [Oryza sativa Japonica Group] gi|113639408|dbj|BAF26713.1| Os10g0465800 [Oryza sativa Japonica Group]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/164 (94%), Positives = 163/164 (99%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYIPL+TYLRTYKIG++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK KND+LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580702|ref|XP_002531173.1| 60S ribosomal protein L21, putative [Ricinus communis] gi|223529243|gb|EEF31216.1| 60S ribosomal protein L21, putative [Ricinus communis]

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 154/164 (93%), Positives = 162/164 (98%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRT+KIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRA+GVE+NKQVGNRIIKKRIHVRVEH+Q SRCTEEF+LRKKKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAVGVEVNKQVGNRIIKKRIHVRVEHLQVSRCTEEFRLRKKKNDELKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
            RGEVISTKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 GRGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034227|ref|XP_002464508.1| hypothetical protein SORBIDRAFT_01g019840 [Sorghum bicolor] gi|241918362|gb|EER91506.1| hypothetical protein SORBIDRAFT_01g019840 [Sorghum bicolor]

 Score =  321 bits (823), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 155/164 (94%), Positives = 160/164 (97%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQV  RII+KRIHVRVEHVQPSRCTEEF+LRK KND+LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVNGRIIRKRIHVRVEHVQPSRCTEEFRLRKAKNDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP GPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPLGPKPGFMVEGATIETVTPIPYDVVNDLKGGY 164

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091577|ref|XP_002309287.1| predicted protein [Populus trichocarpa] gi|118488898|gb|ABK96258.1| unknown [Populus trichocarpa x Populus deltoides] gi|222855263|gb|EEE92810.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 154/164 (93%), Positives = 162/164 (98%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGD VD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDNVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEH+ PSRCTEEF+LRKKKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHLLPSRCTEEFRLRKKKNDQLKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223946149|gb|ACN27158.1| unknown [Zea mays] gi|413956990|gb|AFW89639.1| 60S ribosomal protein L21 [Zea mays]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/164 (94%), Positives = 159/164 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG VWNVTKRAIGVEINKQV  RII+KRIHVRVEHVQPSRCTEEF+LRK KND+LKADAK
Sbjct: 61  TGSVWNVTKRAIGVEINKQVNGRIIRKRIHVRVEHVQPSRCTEEFRLRKAKNDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPVGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3885884|gb|AAC78102.1| 60S ribosomal protein L21 [Oryza sativa Japonica Group]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/164 (93%), Positives = 162/164 (98%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPA HGLR+RTRDLFARPFRKKGYIPL+TYLRTYKIG++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPADHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTEEF+LRK KND+LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138146|ref|XP_002322741.1| predicted protein [Populus trichocarpa] gi|222867371|gb|EEF04502.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/164 (93%), Positives = 162/164 (98%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGD+VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVE+NKQVGNRII+KRIHVRVEH+ PSRCTEEF+LRKKKND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHLLPSRCTEEFRLRKKKNDQLKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVI TKRQP+GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVICTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501696|ref|NP_001148172.1| LOC100281780 [Zea mays] gi|195616444|gb|ACG30052.1| 60S ribosomal protein L21 [Zea mays]

 Score =  318 bits (816), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/164 (93%), Positives = 159/164 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG VWNVTKRAIGVEINKQV  RII+KRIHVRVEHVQPSRCTEEF+LRK K+D+LKADAK
Sbjct: 61  TGSVWNVTKRAIGVEINKQVNGRIIRKRIHVRVEHVQPSRCTEEFRLRKAKSDQLKADAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP GPKPGFMVEGATLETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPVGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075415|ref|XP_002304624.1| predicted protein [Populus trichocarpa] gi|118484710|gb|ABK94225.1| unknown [Populus trichocarpa] gi|222842056|gb|EEE79603.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 154/164 (93%), Positives = 159/164 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYK+GDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGV INKQVGNRII KRIHVRVEHVQPSRC EEFKLRKKKNDELKA+AK
Sbjct: 61  TGRVWNVTKRAIGVVINKQVGNRIIGKRIHVRVEHVQPSRCREEFKLRKKKNDELKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGE ISTKRQP+GPKPGFMVEGATLET TPIPYDVVNDLKGGY
Sbjct: 121 ARGEKISTKRQPQGPKPGFMVEGATLETFTPIPYDVVNDLKGGY 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2206480	164	AT1G57660 [Arabidopsis thalian	1.0	1.0	0.902	1.2e-81
TAIR|locus:2009410	164	AT1G57860 [Arabidopsis thalian	1.0	1.0	0.902	1.2e-81
TAIR|locus:2012275	164	AT1G09590 [Arabidopsis thalian	1.0	1.0	0.902	2e-81
TAIR|locus:2024387	164	AT1G09690 [Arabidopsis thalian	1.0	1.0	0.902	2e-81
ASPGD|ASPL0000075029	158	AN4802 [Emericella nidulans (t	0.945	0.981	0.574	5.7e-43
SGD|S000000395	160	RPL21A "Ribosomal 60S subunit	0.945	0.968	0.528	4e-42
SGD|S000006000	160	RPL21B "Ribosomal 60S subunit	0.945	0.968	0.522	8.4e-42
DICTYBASE|DDB_G0279387	160	rpl21 "S60 ribosomal protein L	0.957	0.981	0.528	1.7e-41
FB|FBgn0032987	159	RpL21 "Ribosomal protein L21"	0.945	0.974	0.506	1.2e-40
POMBASE|SPAC959.08	160	rpl2102 "60S ribosomal protein	0.945	0.968	0.522	1.6e-40

TAIR|locus:2206480 AT1G57660 [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 148/164 (90%), Positives = 159/164 (96%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAK
Sbjct:    61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
             ARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

TAIR|locus:2009410 AT1G57860 [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 148/164 (90%), Positives = 159/164 (96%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAK
Sbjct:    61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
             ARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2012275 AT1G09590 [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 148/164 (90%), Positives = 158/164 (96%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AK
Sbjct:    61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
             A GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2024387 AT1G09690 [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 148/164 (90%), Positives = 158/164 (96%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AK
Sbjct:    61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
             A GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

ASPGD|ASPL0000075029 AN4802 [Emericella nidulans (taxid:162425)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 89/155 (57%), Positives = 115/155 (74%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M   HGLRS TR  F+R FR+KG I LSTYL+TY++GD VD+KVNGAV KGMP+K Y+G+
Sbjct:     1 MGHSHGLRSGTRYAFSRNFREKGQIRLSTYLKTYRVGDIVDIKVNGAVQKGMPYKVYNGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TG V+NVTK ++GV + K VGNR ++KRI+VR+EHV+ SR  E+F  R K+N E K  AK
Sbjct:    61 TGVVYNVTKSSVGVLLYKVVGNRYLEKRINVRIEHVKHSRSREDFIKRVKENAEKKKQAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYD 155
              +G  +  KRQP  P+    VEG+T ET+TP+PYD
Sbjct:   121 EQGIHLHLKRQPAQPREAHTVEGSTPETITPLPYD 155

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

SGD|S000000395 RPL21A "Ribosomal 60S subunit protein L21A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 83/157 (52%), Positives = 113/157 (71%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct:     1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AK
Sbjct:    61 TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
             A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0002181 "cytoplasmic translation" evidence=TAS

SGD|S000006000 RPL21B "Ribosomal 60S subunit protein L21B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 82/157 (52%), Positives = 113/157 (71%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M   HG RSRTR +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct:     1 MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AK
Sbjct:    61 TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
             A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

DICTYBASE|DDB_G0279387 rpl21 "S60 ribosomal protein L21" [Dictyostelium discoideum (taxid:44689)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 84/159 (52%), Positives = 108/159 (67%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGR
Sbjct:     1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK
Sbjct:    61 TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 157
               G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:   121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

GO:0009617 "response to bacterium" evidence=IEP

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0032987 RpL21 "Ribosomal protein L21" [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 81/160 (50%), Positives = 115/160 (71%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M    G R  TRD+F+RPFRK G IPLSTY+R +KIGD VD+K +GAV KG+P+K YHG+
Sbjct:     1 MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQKGLPYKAYHGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TGR++NVT+ A+GV +NK+V  +I+ KR++VR+EH+  S+C E+F  R K+N+ L  +AK
Sbjct:    61 TGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSKCREDFLRRVKENERLLKEAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLE---TVTPIPYDVV 157
              +G+ +S KRQP+ PK    V+   LE    + PIPY+ +
Sbjct:   121 EKGQWVSLKRQPEQPKKAHFVK--KLEEPIALAPIPYEFI 158

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

POMBASE|SPAC959.08 rpl2102 "60S ribosomal protein L21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 82/157 (52%), Positives = 112/157 (71%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct:     1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
             TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AK
Sbjct:    61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query:   121 ARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 155
             A+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:   121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02753	RL21A_YEAST	No assigned EC number	0.5286	0.9451	0.9687	yes	no
Q9FDZ9	RL212_ARATH	No assigned EC number	0.9024	1.0	1.0	yes	no
P34334	RL21_CAEEL	No assigned EC number	0.4687	0.9573	0.9751	yes	no
Q54X53	RL21_DICDI	No assigned EC number	0.5283	0.9573	0.9812	yes	no
Q8SRW8	RL21_ENCCU	No assigned EC number	0.4527	0.8780	0.9	yes	no
O09167	RL21_MOUSE	No assigned EC number	0.4779	0.9573	0.9812	yes	no
Q43291	RL211_ARATH	No assigned EC number	0.9024	1.0	1.0	yes	no
Q9UUC1	RL21A_SCHPO	No assigned EC number	0.5222	0.9451	0.9687	yes	no
Q12672	RL21B_YEAST	No assigned EC number	0.5222	0.9451	0.9687	yes	no
P46778	RL21_HUMAN	No assigned EC number	0.4905	0.9573	0.9812	yes	no
O42706	RL21B_SCHPO	No assigned EC number	0.5222	0.9451	0.9687	yes	no
P20280	RL21_RAT	No assigned EC number	0.4779	0.9573	0.9812	yes	no
O82574	RL21_CYAPA	No assigned EC number	0.5949	0.9451	0.9627	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4331575	60S ribosomal protein L21-2, putative, expressed (164 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4333148	40S ribosomal protein S19, putative (146 aa)	•		•	•		•	•		0.969
	4331742	40S ribosomal protein S28, putative, expressed (65 aa)				•			•		0.903
	4333387	60S ribosomal protein L15, putative, expressed (204 aa)			•	•	•	•	•		0.902
	LOC_Os03g40180.1	60S ribosomal protein L15, putative, expressed (204 aa)			•	•	•	•	•		0.902
	4332773	60S ribosomal protein L19-3, putative, expressed (208 aa)				•	•	•	•		0.894
	4333317	60S ribosomal protein L19-3, putative, expressed (206 aa)				•	•	•	•		0.893
	4352560	60S ribosomal protein L8, putative, expressed (261 aa)				•	•	•	•		0.883
	4325282	60S ribosomal protein L37a, putative, expressed (92 aa)				•	•	•	•		0.870
	4335547	ribosomal protein, putative, expressed (221 aa)			•	•		•	•		0.853
	OsI_10272	ribosomal protein S2, putative, expressed (305 aa)				•		•	•		0.849

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN00190	158	PLN00190, PLN00190, 60S ribosomal protein L21; Pro	1e-103
PTZ00189	160	PTZ00189, PTZ00189, 60S ribosomal protein L21; Pro	7e-78
pfam01157	99	pfam01157, Ribosomal_L21e, Ribosomal protein L21e	6e-40
COG2139	98	COG2139, RPL21A, Ribosomal protein L21E [Translati	1e-32
PRK04306	98	PRK04306, PRK04306, 50S ribosomal protein L21e; Re	4e-20

>gnl|CDD|177784 PLN00190, PLN00190, 60S ribosomal protein L21; Provisional

 Score =  291 bits (746), Expect = e-103
 Identities = 142/158 (89%), Positives = 152/158 (96%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG VWNVTKRA+GVE+NKQVGNRII+KRIHVRVEHVQPSRC EEF LRKK NDE KA+AK
Sbjct: 61  TGIVWNVTKRAVGVEVNKQVGNRIIRKRIHVRVEHVQPSRCREEFLLRKKSNDEAKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVN 158
           A+GE ISTKRQPKGPKPGFMVEGATLETVTPIPYDVVN
Sbjct: 121 AKGEKISTKRQPKGPKPGFMVEGATLETVTPIPYDVVN 158

Length = 158

>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional

 Score =  228 bits (583), Expect = 7e-78
 Identities = 90/157 (57%), Positives = 117/157 (74%), Gaps = 2/157 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP  +G R+ TR  FA+PFRK G   LSTYL T+K+GDYVD+ V+ AVHKGMP+K+YHGR
Sbjct: 1   MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRV+NVT RA+GV +NK+V  RI++KRIHVR+EHV+ SRC E+F  R   ND +KA+AK
Sbjct: 61  TGRVFNVTPRAVGVIVNKRVRGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEG--ATLETVTPIPYD 155
            +GE+ STKRQP  P+P   V+     + TV P+P+ 
Sbjct: 121 KKGELPSTKRQPAQPRPAGFVKPKPTEVVTVRPLPFV 157

Length = 160

>gnl|CDD|110179 pfam01157, Ribosomal_L21e, Ribosomal protein L21e

 Score =  129 bits (327), Expect = 6e-40
 Identities = 61/98 (62%), Positives = 79/98 (80%)

Query: 2  PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
          P  +G R  TR +F RPFRK G  PLSTYLR YK+GDYVD+K+NG+V KGMPHK +HG+T
Sbjct: 1  PNSNGPRRGTRYMFKRPFRKHGLSPLSTYLREYKVGDYVDIKINGSVQKGMPHKRFHGKT 60

Query: 62 GRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99
          GRV+NVT  A+GV +NK+V + I++KRI+VR EH++PS
Sbjct: 61 GRVYNVTPGAVGVAVNKKVRDGILEKRINVRPEHIRPS 98

Length = 99

>gnl|CDD|225050 COG2139, RPL21A, Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]

 Score =  111 bits (280), Expect = 1e-32
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 2   PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
              HG RSRTR    +  R++G  PLS YL+ YK+GD V + ++ +VHKGMPH  + G+T
Sbjct: 1   KRSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKT 60

Query: 62  GRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE 103
           G V  V  RA  VE+    GN+  +K + VR EH++P +C E
Sbjct: 61  GTVVGVRGRAYKVEVY--DGNK--EKTLIVRPEHLKPQKCRE 98

Length = 98

>gnl|CDD|235275 PRK04306, PRK04306, 50S ribosomal protein L21e; Reviewed

 Score = 79.1 bits (196), Expect = 4e-20
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RS+TR   ++  R++G  PLS  L+ ++ GD V + ++ +VHKGMPH  +HG+
Sbjct: 2  MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGK 61

Query: 61 TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 98
          TG V     RA  VE+    G +  +K + VR EH++P
Sbjct: 62 TGTVVGKRGRAYIVEVK--DGGK--EKTLIVRPEHLRP 95

Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PTZ00189	160	60S ribosomal protein L21; Provisional	100.0
PLN00190	158	60S ribosomal protein L21; Provisional	100.0
KOG1732	160	consensus 60S ribosomal protein L21 [Translation,	100.0
PRK04306	98	50S ribosomal protein L21e; Reviewed	100.0
PF01157	99	Ribosomal_L21e: Ribosomal protein L21e; InterPro:	100.0
COG2139	98	RPL21A Ribosomal protein L21E [Translation, riboso	100.0
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	82.45
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	81.65
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	80.8
CHL00141	83	rpl24 ribosomal protein L24; Validated	80.37

>PTZ00189 60S ribosomal protein L21; Provisional

Probab=100.00  E-value=2.4e-80  Score=496.42  Aligned_cols=158  Identities=57%  Similarity=0.947  Sum_probs=156.4

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|||+|||+|||++||+||++|||+||++|++||+|||++||||||||||+||||+||+|||||++||||+||++|
T Consensus         1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~v   80 (160)
T PTZ00189          1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV   80 (160)
T ss_pred             CCCCCCccccchhhhCccccccCCCcHHHHHHHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCeEEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeee--cCCceeEeeeeceeEEe
Q 031165           81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVVN  158 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v--~~~~p~~l~p~py~~~~  158 (164)
                      ||+||+|+||||||||++|+|+++||+|||+||++++|||++|+||+|||||++||+||||  ++++|++|+|+||+|++
T Consensus        81 g~ki~~Kri~vr~EHlk~sk~r~~fl~Rvk~n~~~~~~ak~~g~~v~~Kr~p~~Pr~a~~v~~~~~~p~~~~p~py~~~~  160 (160)
T PTZ00189         81 RGRIVRKRIHVRIEHVRKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQPAQPRPAGFVKPKPTEVVTVRPLPFVEIY  160 (160)
T ss_pred             CCEEeeeEEecCHhHcCCcCCHHHHHHHHHHhHHHHHHHHHcCCccccccCCCCCCCceEEecCCCceeEecccceEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999  78999999999999975

>PLN00190 60S ribosomal protein L21; Provisional

Probab=100.00  E-value=1e-79  Score=491.92  Aligned_cols=158  Identities=90%  Similarity=1.433  Sum_probs=154.8

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|||++||||||++||+||++|||+||++|++||+|||++||||||||||+||||+||+|||||++||||+|||+|
T Consensus         1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~A~gV~V~K~v   80 (158)
T PLN00190          1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQV   80 (158)
T ss_pred             CCCCCCccccchhhhCccccccCCCcHHHHHHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCcEEEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeeecCCceeEeeeeceeEEe
Q 031165           81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVN  158 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v~~~~p~~l~p~py~~~~  158 (164)
                      ||+|++|+||||||||++|+||+|||+|||+||++++|||++|+||+|||||++||+||||++++|++|+|+||+|+.
T Consensus        81 ggr~~~Kri~vriEHlk~sk~r~~Fl~Rvk~n~~~~~eak~~g~~v~lKrqp~~Pr~~~~v~~~~p~~l~p~py~~~~  158 (158)
T PLN00190         81 GNRIIRKRIHVRVEHVQPSRCREEFLLRKKSNDEAKAEAKAKGEKISTKRQPKGPKPGFMVEGATLETVTPIPYDVVN  158 (158)
T ss_pred             CCeEeeEEEEeCHHHccCccCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCCCCcceEecCCCeeEecccceEecC
Confidence            999999999999999999999999999999999999999999999999999999999999943499999999999873

>KOG1732 consensus 60S ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-66  Score=415.88  Aligned_cols=158  Identities=52%  Similarity=0.913  Sum_probs=155.1

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++++|+|++|||+|+++||+||+.||++||++|++||+|||+++++.|+||||+||||+||+||+|+++|+||++||||
T Consensus         1 m~~~~g~~~~t~~~~~~~~~k~~~~~l~~y~~i~k~gdivdi~~~~~~~kg~p~k~y~gktgrvy~v~~~a~giv~nKqv   80 (160)
T KOG1732|consen    1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGNGTVQKGMPHKCYHGKTGRVYNVTQHAVGVVVNKQV   80 (160)
T ss_pred             CCcccCcccccceeecchhhhcCeeeeeeeeeeecccceeecccccchhcCCccccccccccceeeccceeEEEEEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeee--cCCceeEeeeeceeEEe
Q 031165           81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVVN  158 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v--~~~~p~~l~p~py~~~~  158 (164)
                      +|||++|||||+|||+++|+|+++||+|++|||++++||||+|+|||++|+|++||+||||  ++++||+|+||||+|++
T Consensus        81 kgKil~KRinV~iEhik~sk~~~~fl~r~kendqkkkeAKekg~wvq~k~p~~~prea~~Vrt~gkepell~pip~~f~a  160 (160)
T KOG1732|consen   81 KGKILAKRINVRIEHIKHSKCRDEFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA  160 (160)
T ss_pred             ccceeeeeeeeEeeccccccchhhhhhhhcccchhhhhHHhcCceeecccCCCCCcceeEEEcCCCCccccccccccccC
Confidence            9999999999999999999999999999999999999999999999977777789999999  99999999999999975

>PRK04306 50S ribosomal protein L21e; Reviewed

Probab=100.00  E-value=3.2e-50  Score=300.83  Aligned_cols=97  Identities=40%  Similarity=0.696  Sum_probs=94.7

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|||++||++||++||+||++|||+||++|++||+|||++||||||||||+||||+||+|||++++||+|+|  +|
T Consensus         2 M~~s~G~R~~TR~~fsk~~R~~G~~~ls~~l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v--~v   79 (98)
T PRK04306          2 MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV--KD   79 (98)
T ss_pred             CCCCCCccccchhhhCcCccccCCCcHHHHHHhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEE--EE
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999999  58


Q ss_pred             CcEeeeeEEeeeeceeecccC
Q 031165           81 GNRIIKKRIHVRVEHVQPSRC  101 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~  101 (164)
                      ||+  +|+||||||||++|+.
T Consensus        80 g~k--~Kri~vr~eHlk~~~~   98 (98)
T PRK04306         80 GGK--EKTLIVRPEHLRPQKG   98 (98)
T ss_pred             CCc--eeEEEcCHHHcCccCC
Confidence            999  8999999999999974

>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8.1e-50  Score=299.04  Aligned_cols=99  Identities=62%  Similarity=0.992  Sum_probs=80.3

Q ss_pred             CCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeC
Q 031165            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVG   81 (164)
Q Consensus         2 ~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~   81 (164)
                      ++|+|+|++||+|||++||+||++||++||++|++||+|||++|||+||||||+||||+||+||||+++|+|++++++|+
T Consensus         1 ~~S~G~R~~TR~~fsk~~R~~G~~~ls~~l~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~~~~~~v~   80 (99)
T PF01157_consen    1 TRSKGYRRGTRYKFSKPFRKHGMIPLSTYLQEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGVAYNKQVK   80 (99)
T ss_dssp             -SS-STTTTTHHHHS--CCCTSS--CHHHH----TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEEEEEEECS
T ss_pred             CCCCCccCCCchhhcCCCccCCCCcHHHHHHHccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEEEEEEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEeeeeEEeeeeceeeccc
Q 031165           82 NRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        82 ~k~i~KrI~VriEHik~sk  100 (164)
                      +++++|+|||++|||++||
T Consensus        81 ~~~~~K~i~vr~eHlk~sK   99 (99)
T PF01157_consen   81 DRIKEKRIIVRPEHLKPSK   99 (99)
T ss_dssp             SSCEEEEEEEEGGGEEE-S
T ss_pred             CCcccEEEEECHHHcccCC
Confidence            9999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....

>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-45  Score=272.94  Aligned_cols=98  Identities=46%  Similarity=0.803  Sum_probs=95.4

Q ss_pred             CCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeC
Q 031165            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVG   81 (164)
Q Consensus         2 ~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~   81 (164)
                      ++|+|||++||++|++++|++|.+|||+||++|++||+|||+||||||+||||++|||+||+|+|++++||.|+|+  +|
T Consensus         1 ~~S~G~R~~TR~kl~k~~RerG~~plsr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~--~G   78 (98)
T COG2139           1 KRSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVY--DG   78 (98)
T ss_pred             CCCccccccchhhhccCccccCCcchhhHHhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEe--cC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999998  89


Q ss_pred             cEeeeeEEeeeeceeecccChH
Q 031165           82 NRIIKKRIHVRVEHVQPSRCTE  103 (164)
Q Consensus        82 ~k~i~KrI~VriEHik~sk~r~  103 (164)
                      |+  .|+|||+||||++++|++
T Consensus        79 ~k--~K~liv~peHLk~~~~~~   98 (98)
T COG2139          79 NK--EKTLIVRPEHLKPQKCRE   98 (98)
T ss_pred             Cc--eEEEEeCHHHccccccCC
Confidence            99  799999999999999974

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=82.45  E-value=3  Score=31.57  Aligned_cols=48  Identities=27%  Similarity=0.412  Sum_probs=35.2

Q ss_pred             hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk  100 (164)
                      .++.||.|-|.--.          +-|++|.|..|....-.|.|          .-+|++..|++++.
T Consensus         3 ~ikkGD~V~Vi~G~----------dKGK~G~V~~V~~~~~~V~V----------egvN~~kkh~k~~~   50 (104)
T TIGR01079         3 KIKKGDTVKVISGK----------DKGKRGKVLKVLPKTNKVIV----------EGVNMVKKHVKPKP   50 (104)
T ss_pred             cccCCCEEEEeEcC----------CCCcEEEEEEEEcCCCEEEE----------CCcEEEEEecCccc
Confidence            46899999886422          66999999887665544444          55788888998864

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=81.65  E-value=3.6  Score=29.48  Aligned_cols=48  Identities=29%  Similarity=0.450  Sum_probs=34.3

Q ss_pred             hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk  100 (164)
                      ..+.||.|-|.- |         .+-|++|+|..+....-.|.|          .-+|+.--|++++.
T Consensus         6 ~I~kGD~V~Vi~-G---------~dKGK~G~V~~V~~~~~~V~V----------egvn~~kkh~kp~~   53 (76)
T PRK12281          6 KVKKGDMVKVIA-G---------DDKGKTGKVLAVLPKKNRVIV----------EGVKIAKKAIKPSQ   53 (76)
T ss_pred             cccCCCEEEEeE-c---------CCCCcEEEEEEEEcCCCEEEE----------cCcEEEEEEcCCCc
Confidence            578999998863 2         266999999887665544444          55677778888753

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=80.80  E-value=3.7  Score=30.97  Aligned_cols=48  Identities=27%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk  100 (164)
                      .+++||.|-|.- |         .+-|++|+|..|......|.|          .-||++--|++++.
T Consensus         4 ~i~kGD~V~Vi~-G---------~dKGk~G~V~~V~~~~~~V~V----------egvn~~k~h~k~~~   51 (105)
T PRK00004          4 KIKKGDTVIVIA-G---------KDKGKRGKVLKVLPKKNKVIV----------EGVNIVKKHQKPNQ   51 (105)
T ss_pred             cccCCCEEEEeE-c---------CCCCcEEEEEEEEcCCCEEEE----------cCcEEEEEecCCCC
Confidence            468999998863 2         256999999988776666655          44677788888763

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=80.37  E-value=4.1  Score=29.61  Aligned_cols=48  Identities=31%  Similarity=0.595  Sum_probs=34.3

Q ss_pred             hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk  100 (164)
                      ..++||.|-|.- |         .+.|++|+|..|....-.|.|          .-+|+.--|++++.
T Consensus         8 ~I~~GD~V~Vi~-G---------~dKGK~G~V~~V~~~~~~V~V----------egvn~~~k~~k~~~   55 (83)
T CHL00141          8 HVKIGDTVKIIS-G---------SDKGKIGEVLKIIKKSNKVIV----------KGINIKFKHIKPNK   55 (83)
T ss_pred             cccCCCEEEEeE-c---------CCCCcEEEEEEEEcCCCEEEE----------cCcEEEEEEcCCcc
Confidence            567899999864 2         266999999888766555554          44667777887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
3izr_U	164	Localization Of The Large Subunit Ribosomal Protein		8e-86
3izs_U	160	Localization Of The Large Subunit Ribosomal Protein		2e-44
2zkr_q	160	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-37
4a17_P	157	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-34
3zf7_U	159	High-resolution Cryo-electron Microscopy Structure		1e-31
1s1i_Q	100	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-31
3jyw_Q	116	Structure Of The 60s Proteins For Eukaryotic Riboso		4e-31
3j21_R	97	Promiscuous Behavior Of Proteins In Archaeal Riboso		2e-07

>pdb|3IZR|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 164

Iteration: 1
 Score =  311 bits (798), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 150/164 (91%), Positives = 157/164 (95%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYK+G++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC EEF  RK  ND+LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAK 120
Query: 121 ARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
           ARGEVISTKRQP GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDLKGGY 164

>pdb|3IZS|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 160

Iteration: 1
 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 113/157 (71%), Gaps = 2/157 (1%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120
Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 155
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

>pdb|2ZKR|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 160

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 105/159 (66%), Gaps = 2/159 (1%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1   MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK
Sbjct: 61  TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120
Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 157
            +G  +  KR    P+    V   G   E + PIPY+ +
Sbjct: 121 EKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFM 159

>pdb|4A17|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 157

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 98/144 (68%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   +G R +TR  FA+ ++ KG++ +S YL TYK+G+YVD+ V+G+ HKGMP+K YHGR
Sbjct: 1   MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG+V+NV  R+IGV +++ V  R I+KR+HV++EHV+PS        R + ND+ KA+  
Sbjct: 61  TGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGN 120
Query: 121 ARGEVISTKRQPKGPKPGFMVEGA 144
             G+ +STKR P  P     V+GA
Sbjct: 121 KAGKRVSTKRNPGQPLEAVQVQGA 144

>pdb|3ZF7|U Chain U, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 159

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 81/121 (66%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG +  TR LFA+ FRK G   +ST L  +K+GDYVDV  + AV  GMPHK+YHGR
Sbjct: 1   MVHSHGYKCGTRHLFAKKFRKHGVPSVSTILTNFKVGDYVDVVADAAVRAGMPHKYYHGR 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG VWNVT R +GV INK V NR ++KRI VR EHV+ SRC E FK + K  +  +A  K
Sbjct: 61  TGIVWNVTPRGVGVIINKPVRNRTVRKRICVRFEHVRKSRCQEAFKQKLKDLEAFRAAKK 120
Query: 121 A 121
           A
Sbjct: 121 A 121

>pdb|1S1I|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 100

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 79/100 (79%)
Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSK 100

>pdb|3JYW|Q Chain Q, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 116

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 78/96 (81%)
Query: 5   HGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRV 64
           HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V
Sbjct: 4   HGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVV 63
Query: 65  WNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100
           +NVTK ++GV INK VGNR ++KR+++RVEH++ S+
Sbjct: 64  YNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSK 99

>pdb|3J21|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 97

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 4  GHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGR 63
           H  R +TR   ++  R++G  PL+ +L+ +++G  V + +  + HKGMP   +HGRTG 
Sbjct: 5  AHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGT 64
Query: 64 VWNVTKRAIGVEIN 77
          V      A  VEI 
Sbjct: 65 VVGKRGEAYIVEIK 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3iz5_U	164	60S ribosomal protein L21 (L21E); eukaryotic ribos	4e-67
3izc_U	160	60S ribosomal protein RPL21 (L21E); eukaryotic rib	3e-62
2zkr_q	160	60S ribosomal protein L21; protein-RNA complex, 60	3e-62
4a17_P	157	RPL21, 60S ribosomal protein L21; eukaryotic ribos	2e-59
3jyw_Q	116	60S ribosomal protein L21(A); eukaryotic ribosome,	3e-47
1vq8_Q	96	50S ribosomal protein L21E; ribosome 50S, protein-	2e-43

>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 160

 Score =  188 bits (478), Expect = 3e-62
 Identities = 76/159 (47%), Positives = 105/159 (66%), Gaps = 2/159 (1%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1   MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK
Sbjct: 61  TGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAK 120

Query: 121 ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVV 157
            +G  +  KR    P+    V   G   E + PIPY+ +
Sbjct: 121 EKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFM 159

>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P Length = 157

 Score =  180 bits (459), Expect = 2e-59
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 4/156 (2%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           M   +G R +TR  FA+ ++ KG++ +S YL TYK+G+YVD+ V+G+ HKGMP+K YHGR
Sbjct: 1   MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK 120
           TG+V+NV  R+IGV +++ V  R I+KR+HV++EHV+PS        R + ND+ KA+  
Sbjct: 61  TGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGN 120

Query: 121 ARGEVISTKRQPKGPKPGFMVEGATL----ETVTPI 152
             G+ +STKR P  P     V+GA      +    I
Sbjct: 121 KAGKRVSTKRNPGQPLEAVQVQGAVNFQHPKVFREI 156

>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q Length = 116

 Score =  148 bits (375), Expect = 3e-47
 Identities = 60/113 (53%), Positives = 79/113 (69%)

Query: 5   HGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRV 64
           HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V
Sbjct: 4   HGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVV 63

Query: 65  WNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKA 117
           +NVTK ++GV INK VGNR ++KR+++RVEH++ S+                A
Sbjct: 64  YNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKAAAAAAAAAAAAAAAAA 116

>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ... Length = 96

 Score =  137 bits (348), Expect = 2e-43
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
           MP+ +G    TR       R +G  P    +  +  G+ V +K++ +V  G  H  + G+
Sbjct: 1   MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQ 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100
           TG V      A  V+I    G +  +K I V   H++   
Sbjct: 61  TGTVEGKQGDAYKVDIV--DGGK--EKTIIVTAAHLRRQE 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3iz5_U	164	60S ribosomal protein L21 (L21E); eukaryotic ribos	100.0
4a17_P	157	RPL21, 60S ribosomal protein L21; eukaryotic ribos	100.0
3izc_U	160	60S ribosomal protein RPL21 (L21E); eukaryotic rib	100.0
2zkr_q	160	60S ribosomal protein L21; protein-RNA complex, 60	100.0
3jyw_Q	116	60S ribosomal protein L21(A); eukaryotic ribosome,	100.0
3j21_R	97	50S ribosomal protein L21E; archaea, archaeal, KIN	100.0
1vq8_Q	96	50S ribosomal protein L21E; ribosome 50S, protein-	100.0

>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P

Probab=100.00  E-value=1.3e-84  Score=518.71  Aligned_cols=156  Identities=42%  Similarity=0.759  Sum_probs=154.0

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|+|+|||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+||||||+|+||+||++|
T Consensus         1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v   80 (157)
T 4a17_P            1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIV   80 (157)
T ss_dssp             -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEE
T ss_pred             CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeeecCCceeEeeeeceeEE
Q 031165           81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVV  157 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v~~~~p~~l~p~py~~~  157 (164)
                      +|+||+|||||+||||+||+||++||+||||||++++||||+|+||||||||+|||+|||| +++||+|+|+||||+
T Consensus        81 ~gkil~KrI~VriEHik~sk~r~~flkrvkend~~kkeak~kg~~v~lKrqp~~pr~a~~v-~~~pe~l~pipye~~  156 (157)
T 4a17_P           81 NGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGNKAGKRVSTKRNPGQPLEAVQV-QGAVNFQHPKVFREI  156 (157)
T ss_dssp             TTEEEEEEEEEEGGGEEECHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCC
T ss_pred             CCEeeeeEEEEeHHHccccccHHHHHHHHHHhHHHHHHHHhcCCccccccCCCCCCcceEe-CCceEEEeccceEee
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999985

>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.3e-83  Score=512.89  Aligned_cols=158  Identities=48%  Similarity=0.848  Sum_probs=95.9

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|+|++||||||++||+||++|||+||++|++||+|||++||||||||||+||||+||+||||+|+||||+||++|
T Consensus         1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v   80 (160)
T 2zkr_q            1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV   80 (160)
T ss_dssp             ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred             CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeee--cCCceeEeeeeceeEEe
Q 031165           81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVVN  158 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v--~~~~p~~l~p~py~~~~  158 (164)
                      +|+||+|+||||+|||++|+||++||+||||||++++|||++|+||||||||+|||+||||  ++++||+|+|+|||+++
T Consensus        81 ~~kil~Kri~vr~eHik~sk~r~~Fl~rvk~n~~~k~eak~kg~~v~lKrqp~~Pr~a~~v~~~~~~pe~~~pipy~~~~  160 (160)
T 2zkr_q           81 KGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFMA  160 (160)
T ss_dssp             SSCCSCEEEEECGGGEEEC-------------------------------------------------------------
T ss_pred             CCeeeeeEEEcCHHHcCccccHHHHHHHHHHhHHHHHHHHhcCCEeeecccCCCCcceEEEECCCCceEEecccceEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999  78999999999999874

>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q

Probab=100.00  E-value=3.5e-59  Score=356.83  Aligned_cols=108  Identities=55%  Similarity=0.936  Sum_probs=105.7

Q ss_pred             CCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeC
Q 031165            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVG   81 (164)
Q Consensus         2 ~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~   81 (164)
                      ++|+|+|++||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+||||||+||||+||+||+
T Consensus         1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~   80 (116)
T 3jyw_Q            1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVG   80 (116)
T ss_dssp             CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCS
T ss_pred             CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEeeeeEEeeeeceeecccChHHHHHHH
Q 031165           82 NRIIKKRIHVRVEHVQPSRCTEEFKLRK  109 (164)
Q Consensus        82 ~k~i~KrI~VriEHik~sk~r~~fl~rv  109 (164)
                      ||||+|||||+||||+||+||++||.-.
T Consensus        81 gKil~KrInVriEHik~sk~r~~~~~~~  108 (116)
T 3jyw_Q           81 NRYLEKRLNLRVEHIKHSKAAAAAAAAA  108 (116)
T ss_dssp             SSSCCCEEEECGGGBCCCCCSGGGHHHH
T ss_pred             CeeeeeEEEECHhHCccccCHHHHHHHH
Confidence            9999999999999999999999998653

>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.2e-53  Score=314.81  Aligned_cols=96  Identities=31%  Similarity=0.614  Sum_probs=92.7

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|+|++||||||++||+||++||++||++|++||+|||++||||||||||+||||+||+||||||+||||+||+  
T Consensus         2 m~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~--   79 (97)
T 3j21_R            2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD--   79 (97)
T ss_dssp             -CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE--
T ss_pred             CCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe--
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999996  


Q ss_pred             CcEeeeeEEeeeeceeeccc
Q 031165           81 GNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk  100 (164)
                      +|  ++|||||+||||+||+
T Consensus        80 ~g--~~Kri~vrieHik~~~   97 (97)
T 3j21_R           80 GS--KVKTLFIHPVHLRPQK   97 (97)
T ss_dssp             TT--EEEEEEECGGGEEECC
T ss_pred             CC--cceEEEECHHHccccC
Confidence            78  4999999999999985

>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...

Probab=100.00  E-value=3.3e-53  Score=314.85  Aligned_cols=96  Identities=26%  Similarity=0.363  Sum_probs=92.8

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (164)
Q Consensus         1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v   80 (164)
                      |++|+|+|++||||||++||+||++|||+||++|++||+|||++||||||||||+||||+||+||||||+||||+||+++
T Consensus         1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v   80 (96)
T 1vq8_Q            1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG   80 (96)
T ss_dssp             -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CcEeeeeEEeeeeceeeccc
Q 031165           81 GNRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        81 ~~k~i~KrI~VriEHik~sk  100 (164)
                      ++    |+||||||||++|+
T Consensus        81 k~----Kri~vr~eHik~sk   96 (96)
T 1vq8_Q           81 KE----KTIIVTAAHLRRQE   96 (96)
T ss_dssp             EE----EEEEECGGGEEECC
T ss_pred             CC----cEEEeCHhHcccCC
Confidence            76    69999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1vqoq1	95	b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeo	1e-37

>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L21e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  122 bits (308), Expect = 1e-37
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 2   PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
           P+ +G    TR       R +G  P    +  +  G+ V +K++ +V  G  H  + G+T
Sbjct: 1   PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQT 60

Query: 62  GRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100
           G V      A  V+I         +K I V   H++   
Sbjct: 61  GTVEGKQGDAYKVDIVDGG----KEKTIIVTAAHLRRQE 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1vqoq1	95	Ribosomal proteins L21e {Archaeon Haloarcula maris	100.0

>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L21e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.1e-48  Score=285.28  Aligned_cols=95  Identities=26%  Similarity=0.394  Sum_probs=92.5

Q ss_pred             CCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeC
Q 031165            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVG   81 (164)
Q Consensus         2 ~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~   81 (164)
                      ++|+|||++||++|||+||+||++|||+||++|++||+|||++|||+||||||+||||+||+|+|++++||+|.|+  +|
T Consensus         1 p~S~G~R~~TR~~~sk~~R~~G~~~ls~~l~~y~~GD~V~I~idpsv~kGmPh~~yhGkTG~V~~~~g~a~~V~v~--~g   78 (95)
T d1vqoq1           1 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIV--DG   78 (95)
T ss_dssp             CCCCCTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE--ET
T ss_pred             CCCCCcCccChHHhccCccccCCCChhhheeeccCCCEEEEEecCCeecCccceeecCCceeEEeecCeEEEEEEe--cC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999998  68


Q ss_pred             cEeeeeEEeeeeceeeccc
Q 031165           82 NRIIKKRIHVRVEHVQPSR  100 (164)
Q Consensus        82 ~k~i~KrI~VriEHik~sk  100 (164)
                      |+  +|+||||||||++|+
T Consensus        79 ~~--~K~i~vr~eHlk~sk   95 (95)
T d1vqoq1          79 GK--EKTIIVTAAHLRRQE   95 (95)
T ss_dssp             TE--EEEEEECGGGEEECC
T ss_pred             Ce--eEEEEEchhhcccCC
Confidence            87  799999999999986