Citrus Sinensis ID: 031176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDVKISKFFDsigsfftggdqipwcdrdiiAGCEREVaeanddkqkseSIMRLSWALVHSRQAEDVQRGIAMLEAslansspplqqREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEdriakdgviGIGITATAVGLIAGGIAAALARKK
Flexible Loop (DISEMBL)
MDVKISKFFDSIgsfftggdqipwCDRDIIAGCEREVaeanddkqkseSIMRLSWALVHSRQAEDVQRGIAMLEAslansspplqQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK
Low Complexity Region (SEG)
MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDgvigigitatavgliaggiaaalaRKK
Disordered region (IsUnstruct)
****ISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREV*************MRLSWALVHS***************************EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAAL****
Disordered Region (DISOPRED)
*****SKFFDSIGSFFTGGDQIPWCDRDIIA*******************MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARK*
Disordered Region (DISEMBL)
MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREV***********SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK
Disordered Region (DISPRO)
*****SKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARK*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVKISKFFDSIGSFFTGGDQIPWCDRDIxxxxxxxxxxxxxxxxxxxxxMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q6CFJ0	154	Mitochondria fission 1 pr	yes	no	0.664	0.707	0.378	9e-16
Q9CQ92	152	Mitochondrial fission 1 p	yes	no	0.670	0.723	0.359	4e-12
P84817	152	Mitochondrial fission 1 p	yes	no	0.670	0.723	0.350	1e-11
Q3T0I5	152	Mitochondrial fission 1 p	yes	no	0.670	0.723	0.342	2e-11
Q7S8M1	153	Mitochondria fission 1 pr	N/A	no	0.664	0.712	0.350	2e-11
Q9Y3D6	152	Mitochondrial fission 1 p	yes	no	0.670	0.723	0.342	3e-11
Q6CU37	155	Mitochondria fission 1 pr	yes	no	0.817	0.864	0.293	1e-10
P0CN70	154	Mitochondria fission 1 pr	no	no	0.652	0.694	0.339	3e-10
P0CN71	154	Mitochondria fission 1 pr	N/A	no	0.652	0.694	0.339	3e-10
Q4X0I8	151	Mitochondria fission 1 pr	yes	no	0.859	0.933	0.273	3e-10

>sp|Q6CFJ0|FIS1_YARLI Mitochondria fission 1 protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIS1 PE=3 SV=2

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%), Gaps = 2/111 (1%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W L+ SR+ ED Q G+ +L     ++  P ++RE LY LA+G Y+ GEY  +R+  +  
Sbjct: 45  AWGLIKSRKVEDQQLGVQILAQVYKDT--PSRRRECLYYLAIGSYKLGEYTDARKYCDLL 102

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           L+I PD  Q+  L++ +ED++AK+G+IGI I    + + A  + A L++KK
Sbjct: 103 LQIEPDDPQSAKLRQIIEDKLAKEGMIGIAIVGGVIAVGAAVLGAVLSQKK 153

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9CQ92|FIS1_MOUSE Mitochondrial fission 1 protein OS=Mus musculus GN=Fis1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  ED++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 39  AWCLVRSKYNEDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGIT---ATAVGLIAGGIAAALARKK 164
           L+  P   QA  L++ ++  + KDG++G+ I    A  V  +AG I  A+++ K
Sbjct: 98  LQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLAGLIGLAVSKSK 151

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.

Mus musculus (taxid: 10090)

>sp|P84817|FIS1_RAT Mitochondrial fission 1 protein OS=Rattus norvegicus GN=Fis1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  +D++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 39  AWCLVRSKYNDDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGIT---ATAVGLIAGGIAAALARKK 164
           L+  P   QA  L++ ++  + KDG++G+ I    A  V  +AG I  A+++ K
Sbjct: 98  LQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLAGLIGLAVSKSK 151

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0I5|FIS1_BOVIN Mitochondrial fission 1 protein OS=Bos taurus GN=FIS1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 4/114 (3%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  +D+++G+A+LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 39  AWCLVRSKYNDDIRKGLALLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGIT---ATAVGLIAGGIAAALARKK 164
           L+  P   QA  L++ ++  + KDG++G+ I    A  V  +AG I  A+++ K
Sbjct: 98  LQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLAGLIGLAVSKSK 151

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis.

Bos taurus (taxid: 9913)

>sp|Q7S8M1|FIS1_NEUCR Mitochondria fission 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fis-1 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S    D   G+ +L      S  P ++RE LY LA+G Y+ G YA++R+  +  
Sbjct: 42  AWGLVKSNVRADQHLGVMLLSEIFRTS--PERRRECLYYLALGNYKLGNYAQARKYNDAL 99

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGI---TATAVGLIAGGIAAALARKK 164
           LE  P   QA  L+  ++D++ K+G++G+ I    A A G+I G +   L RK+
Sbjct: 100 LENEPANLQAANLRALIDDKVTKEGLMGVAIISGVAVAAGVIGGVLLRNLGRKR 153

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9Y3D6|FIS1_HUMAN Mitochondrial fission 1 protein OS=Homo sapiens GN=FIS1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 4/114 (3%)

Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  +D+++GI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 39  AWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query: 114 LEIAPDWRQALGLKKTVEDRIAKDGVIGIGIT---ATAVGLIAGGIAAALARKK 164
           L+  P   QA  L++ ++  + KDG++G+ I    A  V  +AG I  A+++ K
Sbjct: 98  LQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLAGLIGLAVSKSK 151

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.

Homo sapiens (taxid: 9606)

>sp|Q6CU37|FIS1_KLULA Mitochondria fission 1 protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FIS1 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 9/143 (6%)

Query: 20  DQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79
           D     + D I    ++V     +    +S    +W LV S   ED   G+ +L      
Sbjct: 12  DSYSALNSDQIEILRQQVLNEGGEISSIQSRFNYAWGLVRSTNKEDQMLGVKLLTDIYKE 71

Query: 80  SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV 139
           S  P+++RE LY L +G Y+ GEY+ +++ ++  +   P+ +QAL L+  VE++I   G+
Sbjct: 72  S--PMRRRECLYYLTIGCYKLGEYSTAKRYVDALVHHEPENKQALMLQTAVENKITSQGL 129

Query: 140 -------IGIGITATAVGLIAGG 155
                   GI I AT +GL+  G
Sbjct: 130 KGIALISAGIAIGATTIGLLIRG 152

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P0CN70|FIS1_CRYNJ Mitochondria fission 1 protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=FIS1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 48  ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
           +S     W L+ S   E    G+ +L+     S+ P  +RE  Y +AVGYY+   YA +R
Sbjct: 39  QSKFNYGWGLIKSPSPELETEGVKLLQE--IYSASPDHRRECTYYIAVGYYKLRNYAYAR 96

Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATA---VGLIAGGI 156
           +     L + P   QA  L   +E+ + +DG++GIG+   A   VGLIAG +
Sbjct: 97  KFNNLLLSVEPGNMQAQSLSTLIENAVKRDGLVGIGMITGAVAVVGLIAGSV 148

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CN71|FIS1_CRYNB Mitochondria fission 1 protein OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=FIS1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 48  ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
           +S     W L+ S   E    G+ +L+     S+ P  +RE  Y +AVGYY+   YA +R
Sbjct: 39  QSKFNYGWGLIKSPSPELETEGVKLLQE--IYSASPDHRRECTYYIAVGYYKLRNYAYAR 96

Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATA---VGLIAGGI 156
           +     L + P   QA  L   +E+ + +DG++GIG+   A   VGLIAG +
Sbjct: 97  KFNNLLLSVEPGNMQAQSLSTLIENAVKRDGLVGIGMITGAVAVVGLIAGSV 148

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q4X0I8|FIS1_ASPFU Mitochondria fission 1 protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fis1 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 9/150 (6%)

Query: 22  IPWCDRDIIAGCEREVAEANDDKQKS----ESIMRLSWALVHSRQAEDVQRGIAMLEASL 77
           + + D   +   E +V  A  +K+      ++    +W L+ S    D Q G+ +L    
Sbjct: 4   LNYPDSSPLKPAELQVLRAQYEKEGDYVGIQTKFNYAWGLIKSNARTDQQEGVRLLSEIF 63

Query: 78  ANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
              + P ++RE LY LA+G Y+ G Y ++R+  +  LE  P   QA  L   ++D+++K+
Sbjct: 64  --RAAPERRRECLYYLALGNYKLGNYGEARRYNDLLLEKEPGNLQAASLGSLIDDKVSKE 121

Query: 138 GVIGIGIT---ATAVGLIAGGIAAALARKK 164
           G++GI I    A A G++ G +    A+++
Sbjct: 122 GLMGIAIVGGLALAAGIVGGLVFKGAAKRR 151

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
388506222	167	unknown [Lotus japonicus] gi|388509168|g	1.0	0.982	0.784	2e-71
358249000	167	uncharacterized protein LOC100785425 [Gl	1.0	0.982	0.766	2e-70
357509485	167	Mitochondrial fission 1 protein [Medicag	1.0	0.982	0.754	6e-69
326514756	164	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.743	1e-68
388517985	167	unknown [Medicago truncatula]	1.0	0.982	0.748	2e-68
351722657	181	uncharacterized protein LOC100306722 [Gl	0.993	0.900	0.705	2e-67
224139750	167	predicted protein [Populus trichocarpa]	1.0	0.982	0.808	2e-67
449449795	167	PREDICTED: mitochondria fission 1 protei	1.0	0.982	0.778	3e-66
297817028	170	binding protein [Arabidopsis lyrata subs	1.0	0.964	0.723	4e-66
359482219	167	PREDICTED: mitochondria fission 1 protei	1.0	0.982	0.808	4e-66

>gi|388506222|gb|AFK41177.1| unknown [Lotus japonicus] gi|388509168|gb|AFK42650.1| unknown [Lotus japonicus]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 146/167 (87%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           MD KI   F+SIG+FF+GGDQIPWCDRD+IAGCEREVAEA++   +++K ESIMRLSWAL
Sbjct: 1   MDAKIGSLFESIGNFFSGGDQIPWCDRDVIAGCEREVAEASNGESEERKHESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSR+ EDVQRGIAMLE SL N   PLQQREKLYLLAVGYYR+ +Y +SR++LEQCLEIA
Sbjct: 61  VHSREKEDVQRGIAMLETSLGNDKSPLQQREKLYLLAVGYYRSNDYGRSRELLEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQA  LKK VEDRIAKDGVIGIGITATAVGLI GGIAAALARK 
Sbjct: 121 PDWRQARSLKKAVEDRIAKDGVIGIGITATAVGLIVGGIAAALARKN 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249000|ref|NP_001239720.1| uncharacterized protein LOC100785425 [Glycine max] gi|255631918|gb|ACU16326.1| unknown [Glycine max]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 144/167 (86%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEA---NDDKQKSESIMRLSWAL 57
           MD K    F+SIG+FFTGG+QIPWCDRD+IAGCEREVAEA   + +++K+ESIMRLSWAL
Sbjct: 1   MDAKFGSLFESIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ ED+QRGIAMLE SL N   PL QREKLYLLAVGYYR+ +Y +SRQ++EQCLEIA
Sbjct: 61  VHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQAL LKK VEDRIAKDGVIGIGITATAVGLI GGIA ALAR+ 
Sbjct: 121 PDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIATALARRN 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509485|ref|XP_003625031.1| Mitochondrial fission 1 protein [Medicago truncatula] gi|124359978|gb|ABN07994.1| Protein kinase [Medicago truncatula] gi|355500046|gb|AES81249.1| Mitochondrial fission 1 protein [Medicago truncatula]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 143/167 (85%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           M+ KI   F+S+G+FFTGGDQIPWCDRD+I+GCEREV EA++   D++K+ESIMRLSWAL
Sbjct: 1   MEAKIGSIFESLGNFFTGGDQIPWCDRDVISGCEREVGEASNGDSDERKNESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ ED+ RGIAMLE SL N   PL QREKLYLLAVGYYR  +Y +SRQ+LEQCLEIA
Sbjct: 61  VHSRQQEDIHRGIAMLETSLGNDRSPLHQREKLYLLAVGYYRATDYPRSRQLLEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQAL LKKTVE+RIAKDGVIGIGITATA GL+ G IAAALARK 
Sbjct: 121 PDWRQALSLKKTVEERIAKDGVIGIGITATAAGLLVGVIAAALARKN 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326514756|dbj|BAJ99739.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326519168|dbj|BAJ96583.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/164 (74%), Positives = 142/164 (86%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHS 60
           M+ K+SKFFDS+GSFF+GGD IPWCDRDIIAGCEREVAEA  ++QK++SIMRLSWALVHS
Sbjct: 1   MEAKMSKFFDSVGSFFSGGDNIPWCDRDIIAGCEREVAEAATEEQKNDSIMRLSWALVHS 60

Query: 61  RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120
           +Q +DV RGI M+EASL  ++ PLQ REKLYLLAVG+YR G Y +SRQ+ ++CLEI PDW
Sbjct: 61  KQTDDVNRGIGMIEASLDKTTSPLQTREKLYLLAVGHYRNGNYVRSRQLADRCLEIQPDW 120

Query: 121 RQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           RQA  LKK +ED+IAKDGVIGIGI  TAVGLI GGIAAALARKK
Sbjct: 121 RQASSLKKAIEDKIAKDGVIGIGIATTAVGLIVGGIAAALARKK 164

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517985|gb|AFK47054.1| unknown [Medicago truncatula]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/167 (74%), Positives = 142/167 (85%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           M+ KI   F+S+G+FFTGGDQIPWCDRD+I+GCEREV EA++   D++K+ESIMRLSWAL
Sbjct: 1   MEAKIGSIFESLGNFFTGGDQIPWCDRDVISGCEREVGEASNGDSDERKNESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ ED+ RGIAMLE SL N   PL QREKLYLLAVGYYR  +Y +SRQ+LEQCLEIA
Sbjct: 61  VHSRQQEDIHRGIAMLETSLGNDRSPLHQREKLYLLAVGYYRATDYPRSRQLLEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQAL LKKTVE+RI KDGVIGIGITATA GL+ G IAAALARK 
Sbjct: 121 PDWRQALSLKKTVEERIVKDGVIGIGITATAAGLLVGVIAAALARKN 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722657|ref|NP_001235460.1| uncharacterized protein LOC100306722 [Glycine max] gi|255629375|gb|ACU15032.1| unknown [Glycine max]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 144/180 (80%), Gaps = 17/180 (9%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEA---NDDKQKSESIMRLSWAL 57
           MD K    F++IG+FFTGG+QIPWCDRD+IAGCEREVAEA   + +++K+ESIMRLSWAL
Sbjct: 1   MDAKFGSLFETIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ ED+QRGIAMLE SL N   PL QREKLYLLAVGYYR+ +Y +SRQ++EQCLEIA
Sbjct: 61  VHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAK--------------DGVIGIGITATAVGLIAGGIAAALARK 163
           PDWRQAL LKK VEDRIAK              DGVIGIGITATAVGLI GGIA ALAR+
Sbjct: 121 PDWRQALSLKKIVEDRIAKALTKELQMFVVSMPDGVIGIGITATAVGLIVGGIATALARR 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139750|ref|XP_002323259.1| predicted protein [Populus trichocarpa] gi|222867889|gb|EEF05020.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 152/167 (91%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEA---NDDKQKSESIMRLSWAL 57
           MDVKI + F+S+GSFFTG D IPWCDRDII GCERE+AEA   + ++ K +SIMRLSWAL
Sbjct: 1   MDVKIREVFESVGSFFTGDDHIPWCDRDIINGCEREIAEAAEGDSEELKRDSIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHS+Q EDVQRGIAMLEASLANSS PLQQREK+YLLAVGYYR+GEY++SRQ+++QCLEIA
Sbjct: 61  VHSKQPEDVQRGIAMLEASLANSSSPLQQREKIYLLAVGYYRSGEYSRSRQLVDQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQAL LKKT+EDRIAKDGVIGIGITATAVGLIAGGIAAA ARKK
Sbjct: 121 PDWRQALVLKKTLEDRIAKDGVIGIGITATAVGLIAGGIAAAFARKK 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449795|ref|XP_004142650.1| PREDICTED: mitochondria fission 1 protein-like [Cucumis sativus] gi|449506674|ref|XP_004162815.1| PREDICTED: mitochondria fission 1 protein-like [Cucumis sativus]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 149/167 (89%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           M+ KI K F+S+ SFF GGDQIPWCDRD+I GCEREVAEA++   +++K+ESIMRLSWAL
Sbjct: 1   MEAKIGKLFESVCSFFGGGDQIPWCDRDVITGCEREVAEADESASEERKNESIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ+ED+ RGIAMLEASL  S  PLQQREKLYLLAVGYYR+GEYA+SRQ++EQCLEIA
Sbjct: 61  VHSRQSEDINRGIAMLEASLTISRTPLQQREKLYLLAVGYYRSGEYARSRQLVEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PDWRQAL LKKTVED+IAKDGVIGIGITATAVGLIA GIAAA +R+ 
Sbjct: 121 PDWRQALTLKKTVEDQIAKDGVIGIGITATAVGLIAAGIAAAASRRN 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817028|ref|XP_002876397.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297322235|gb|EFH52656.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/170 (72%), Positives = 146/170 (85%), Gaps = 6/170 (3%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           MD KI +FFDS+GSFF+G D+IPWCD D+IAGCEREV EA D   +  K E +MRLSWAL
Sbjct: 1   MDAKIGQFFDSVGSFFSGSDKIPWCDGDVIAGCEREVREATDAGSEDLKKECLMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQ EDVQRGIAMLEASL +S+PPL+ REKLYLLAVGYYR+G+Y+KSRQ++++C+E+ 
Sbjct: 61  VHSRQTEDVQRGIAMLEASLESSAPPLEDREKLYLLAVGYYRSGDYSKSRQLVDRCIEMQ 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITAT---AVGLIAGGIAAALARKK 164
            DWRQAL LKKT+ED+I KDGVIGIGITAT   AVGLIAGGI AA++RKK
Sbjct: 121 ADWRQALVLKKTIEDKITKDGVIGIGITATAFGAVGLIAGGIVAAMSRKK 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482219|ref|XP_003632733.1| PREDICTED: mitochondria fission 1 protein-like [Vitis vinifera] gi|297739910|emb|CBI30092.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 154/167 (92%), Gaps = 3/167 (1%)

Query: 1   MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
           M+ K+ KFF+S+G+FF GGDQIPWCDRD+IAGCE+EVA+A +   ++ KSE IMRLSWAL
Sbjct: 1   MEAKMGKFFESVGAFFGGGDQIPWCDRDVIAGCEKEVADAANGGSEEHKSECIMRLSWAL 60

Query: 58  VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
           VHSRQAED+QRGIAMLEASL +SS PLQ++EKLYLLAVGYYR+GEY KSRQ++EQCLEIA
Sbjct: 61  VHSRQAEDIQRGIAMLEASLTSSSSPLQKKEKLYLLAVGYYRSGEYGKSRQLVEQCLEIA 120

Query: 118 PDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164
           PD+RQAL LKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK
Sbjct: 121 PDFRQALTLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2080665	170	BIGYIN [Arabidopsis thaliana (	0.835	0.805	0.692	5.1e-51
TAIR|locus:505006607	167	FIS1B "AT5G12390" [Arabidopsis	0.835	0.820	0.563	5.3e-40
MGI|MGI:1913687	152	Fis1 "fission 1 (mitochondrial	0.506	0.546	0.369	6.6e-10
UNIPROTKB|E2QTL3	152	FIS1 "Uncharacterized protein"	0.506	0.546	0.357	1.1e-09
RGD|1306668	152	Fis1 "fission 1 (mitochondrial	0.506	0.546	0.357	1.4e-09
UNIPROTKB|Q3T0I5	152	FIS1 "Mitochondrial fission 1	0.506	0.546	0.345	1.8e-09
UNIPROTKB|A5HUN3	152	FIS1 "Fis1 protein" [Cricetulu	0.506	0.546	0.357	1.8e-09
UNIPROTKB|G4N571	154	MGG_06075 "Mitochondria fissio	0.713	0.759	0.312	1.8e-09
UNIPROTKB|Q9Y3D6	152	FIS1 "Mitochondrial fission 1	0.506	0.546	0.345	2.9e-09
CGD|CAL0002844	154	orf19.7111 [Candida albicans (	0.615	0.655	0.271	5.9e-09

TAIR|locus:2080665 BIGYIN [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 97/140 (69%), Positives = 119/140 (85%)

Query:     1 MDVKISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEAND---DKQKSESIMRLSWAL 57
             MD KI +FFDS+G+FF+G D+IPWCD D+IAGCEREV EA D   +  K E +MRLSWAL
Sbjct:     1 MDAKIGQFFDSVGTFFSGSDKIPWCDGDVIAGCEREVREATDSGTEDLKKECLMRLSWAL 60

Query:    58 VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117
             VHSRQ EDVQRGIAMLEASL +S+PPL+ REKLYLLAVGYYR+G Y++SRQ++++C+E+ 
Sbjct:    61 VHSRQTEDVQRGIAMLEASLESSAPPLEDREKLYLLAVGYYRSGNYSRSRQLVDRCIEMQ 120

Query:   118 PDWRQALGLKKTVEDRIAKD 137
              DWRQAL LKKT+ED+I KD
Sbjct:   121 ADWRQALVLKKTIEDKITKD 140

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0016559 "peroxisome fission" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006607 FIS1B "AT5G12390" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 80/142 (56%), Positives = 105/142 (73%)

Query:     1 MDVKISKFFDSIGSFFTGG-----DQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSW 55
             MD  I K FDS+  FF+G      D+ P CD DII+GCE+E+AEA D+ +K E IMRLSW
Sbjct:     1 MDAAIGKVFDSVSDFFSGAASASADEFPLCDSDIISGCEKELAEAQDEGRKKECIMRLSW 60

Query:    56 ALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115
             ALVHS+   D+QRGIAMLEA + N +  ++ REKLYLLA+GYYR+G++++SR  +E+CLE
Sbjct:    61 ALVHSKMPSDIQRGIAMLEALVVNDTSAMKLREKLYLLALGYYRSGDFSRSRDCIERCLE 120

Query:   116 IAPDWRQALGLKKTVEDRIAKD 137
             + P+  QA  LKK +EDRI KD
Sbjct:   121 VEPESGQAQALKKAIEDRIVKD 142

GO:0016559 "peroxisome fission" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1913687 Fis1 "fission 1 (mitochondrial outer membrane) homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  ED++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNEDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0001836 "release of cytochrome c from mitochondria" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO;ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0010821 "regulation of mitochondrion organization" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=ISO;ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=ISO

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=ISO

GO:0070584 "mitochondrion morphogenesis" evidence=ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO

UNIPROTKB|E2QTL3 FIS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/84 (35%), Positives = 50/84 (59%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  +D+++GIA+LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNDDIRKGIALLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

RGD|1306668 Fis1 "fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  +D++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNDDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:0000266 "mitochondrial fission" evidence=ISO;ISS

GO:0000422 "mitochondrion degradation" evidence=IEA;ISO

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=ISO;ISS

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=ISO;ISS

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA;ISO

GO:0010821 "regulation of mitochondrion organization" evidence=IEA;ISO

GO:0016559 "peroxisome fission" evidence=ISO;ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO;ISS

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA;ISO

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IEA;ISO

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA;ISO

GO:0051260 "protein homooligomerization" evidence=IEA;ISO

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA;ISO

GO:0070584 "mitochondrion morphogenesis" evidence=IEA;ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA;ISO

UNIPROTKB|Q3T0I5 FIS1 "Mitochondrial fission 1 protein" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  +D+++G+A+LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNDDIRKGLALLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

UNIPROTKB|A5HUN3 FIS1 "Fis1 protein" [Cricetulus griseus (taxid:10029)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 30/84 (35%), Positives = 49/84 (58%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  +D++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNDDIRRGIMLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:0016559 "peroxisome fission" evidence=IMP

UNIPROTKB|G4N571 MGG_06075 "Mitochondria fission 1 protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/125 (31%), Positives = 65/125 (52%)

Query:    19 GDQIPWC-DRDI-IAGCEREVAEANDDKQKS----ESIMRLSWALVHSRQAEDVQRGIAM 72
             G  +P+  D +  +   E  V  A  DK+      ++    +W LV S    D Q G+ M
Sbjct:     2 GTNLPYAIDAETPLQPAELAVLRAQYDKEGDMVGVQTKFNYAWGLVKSSTRSDQQLGV-M 60

Query:    73 LEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED 132
             L + +  +SP  ++RE LY LA+G Y+ G YA++R+  +  L   P   QA  L+  ++D
Sbjct:    61 LLSEIFRTSPE-RRRECLYYLALGNYKLGNYAEARRYNDLLLGKEPTNLQATNLRSLIDD 119

Query:   133 RIAKD 137
             ++AK+
Sbjct:   120 KVAKE 124

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9Y3D6 FIS1 "Mitochondrial fission 1 protein" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/84 (34%), Positives = 49/84 (58%)

Query:    54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
             +W LV S+  +D+++GI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct:    39 AWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97

Query:   114 LEIAPDWRQALGLKKTVEDRIAKD 137
             L+  P   QA  L++ ++  + KD
Sbjct:    98 LQTEPQNNQAKELERLIDKAMKKD 121

GO:0016559 "peroxisome fission" evidence=IMP;IDA

GO:0000266 "mitochondrial fission" evidence=IMP;IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=NAS;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IMP

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IMP

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IMP

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IDA;IMP

GO:0000422 "mitochondrion degradation" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005777 "peroxisome" evidence=ISS;IDA

GO:0051260 "protein homooligomerization" evidence=IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

GO:0005102 "receptor binding" evidence=IPI

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

CGD|CAL0002844 orf19.7111 [Candida albicans (taxid:5476)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/103 (27%), Positives = 57/103 (55%)

Query:    35 REVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA 94
             ++   + +    +++    +W L+ S   +  + G+ +L   L  S   ++ RE LY L+
Sbjct:    26 KDQLNSEEPTPSAQTKFNYAWGLIKSNHHKQQEYGVQIL-TELYKSEKSMR-REVLYYLS 83

Query:    95 VGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
             +G  + G+Y  +++ +E  LEI P+ +QA GL KT++D+I  +
Sbjct:    84 LGSLKIGDYTNAKRYVEALLEIEPENQQARGLLKTIDDKITTE 126

GO:0003674 "molecular_function" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0001300 "chronological cell aging" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI2G26780.1 annotation not avaliable (164 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
cd12212	113	cd12212, Fis1, Mitochondria Fission Protein Fis1,	3e-19
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004

>gnl|CDD|213405 cd12212, Fis1, Mitochondria Fission Protein Fis1, cytosolic domain

 Score = 77.5 bits (192), Expect = 3e-19
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 55  WALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114
           W L+ S   ED Q G+ +L      S  P ++RE LY LA+G Y+ G Y+++R+  +  L
Sbjct: 31  WGLIKSNSREDQQEGVRLLTEIYRES--PERRRECLYYLALGNYKLGNYSEARRYNDLLL 88

Query: 115 EIAPDWRQALGLKKTVEDRIAKDG 138
           E  PD  QA  LK+ ++D++AK+G
Sbjct: 89  EKEPDNLQAQSLKQLIDDKVAKEG 112

Fis1, along with Dnm1 and Mdv1, is an essential protein in mediating mitochondrial fission. Dnm1 and Fis1 are highly conserved, with a common mechanism in disparate species. In mutants of these proteins, mitochondrial fission is impaired, resulting in networks of undivided mitochondria. The Fis1 N-terminus is cytosolic and tethered to the mitochondrial outer membrane via a C-terminal transmembrane domain. Fis1 appears to act via the recruitment of division complexes to the mitochondrial outer membrane, via interactions with Mdv1 or Caf4. Fis1 has tandem TPR helix-turn-helix motifs which are known to mediate protein-protein interactions. Length = 113

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 33.3 bits (77), Expect = 0.004
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 88  EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120
           E LY L + YY+ G+Y ++ +  E+ LE+ P+ 
Sbjct: 2   EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3364	149	consensus Membrane protein involved in organellar	100.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	99.89
PF14852	35	Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repe	99.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.87
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.75
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.75
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.69
PRK15359	144	type III secretion system chaperone protein SscB;	98.65
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.63
PF13371	73	TPR_9: Tetratricopeptide repeat	98.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.49
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.4
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.29
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.23
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.13
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.08
PRK15359	144	type III secretion system chaperone protein SscB;	98.07
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.06
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.99
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.99
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.99
PRK10803	263	tol-pal system protein YbgF; Provisional	97.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.95
PRK12370	553	invasion protein regulator; Provisional	97.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.95
PRK12370	553	invasion protein regulator; Provisional	97.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.88
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.88
PRK10803	263	tol-pal system protein YbgF; Provisional	97.88
PRK11189	296	lipoprotein NlpI; Provisional	97.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.87
PF13428	44	TPR_14: Tetratricopeptide repeat	97.83
PF13512	142	TPR_18: Tetratricopeptide repeat	97.82
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.8
PRK11189	296	lipoprotein NlpI; Provisional	97.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.75
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.72
PF12688	120	TPR_5: Tetratrico peptide repeat	97.68
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.65
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.47
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.45
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.39
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.38
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.36
KOG0553	304	consensus TPR repeat-containing protein [General f	97.29
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.26
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.24
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.19
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.14
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.94
KOG1126	638	consensus DNA-binding cell division cycle control	96.86
PRK11906	458	transcriptional regulator; Provisional	96.81
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.78
PLN02789	320	farnesyltranstransferase	96.75
KOG2076	895	consensus RNA polymerase III transcription factor	96.71
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.66
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.64
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.63
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.46
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.43
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.42
PF12688	120	TPR_5: Tetratrico peptide repeat	96.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.28
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.22
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.2
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.18
PF13512	142	TPR_18: Tetratricopeptide repeat	96.14
PF13371	73	TPR_9: Tetratricopeptide repeat	96.13
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	96.12
PRK14574	822	hmsH outer membrane protein; Provisional	96.09
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.79
PRK14574	822	hmsH outer membrane protein; Provisional	95.75
KOG1125	579	consensus TPR repeat-containing protein [General f	95.7
PRK15331	165	chaperone protein SicA; Provisional	95.7
KOG1125	579	consensus TPR repeat-containing protein [General f	95.69
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.66
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.57
PF13431	34	TPR_17: Tetratricopeptide repeat	95.45
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.37
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.24
KOG0553	304	consensus TPR repeat-containing protein [General f	95.17
PRK15331	165	chaperone protein SicA; Provisional	95.16
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	95.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.99
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.83
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.57
KOG4234	271	consensus TPR repeat-containing protein [General f	94.5
PLN02789	320	farnesyltranstransferase	94.36
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.34
KOG1129	478	consensus TPR repeat-containing protein [General f	94.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.12
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	94.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	93.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.88
KOG4340	459	consensus Uncharacterized conserved protein [Funct	93.81
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.4
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.26
PF13428	44	TPR_14: Tetratricopeptide repeat	93.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	92.96
KOG1126	638	consensus DNA-binding cell division cycle control	92.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.71
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.56
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	92.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	92.53
KOG0547	606	consensus Translocase of outer mitochondrial membr	92.35
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.23
KOG0495	913	consensus HAT repeat protein [RNA processing and m	92.2
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	91.79
PRK10941	269	hypothetical protein; Provisional	91.22
KOG2076	895	consensus RNA polymerase III transcription factor	90.98
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.82
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	90.8
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	90.71
KOG1128	777	consensus Uncharacterized conserved protein, conta	90.69
PRK11906	458	transcriptional regulator; Provisional	90.63
KOG1129	478	consensus TPR repeat-containing protein [General f	90.55
KOG2581	493	consensus 26S proteasome regulatory complex, subun	90.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	90.04
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	89.76
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	89.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	89.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	89.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	89.2
KOG3364	149	consensus Membrane protein involved in organellar	88.96
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	88.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	87.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	87.58
KOG2376	652	consensus Signal recognition particle, subunit Srp	87.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	87.02
KOG1128	777	consensus Uncharacterized conserved protein, conta	86.86
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	86.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	86.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.14
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	85.09
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	85.02
KOG1310	758	consensus WD40 repeat protein [General function pr	84.88
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	84.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	84.8
COG4575	104	ElaB Uncharacterized conserved protein [Function u	84.4
PF13830	324	DUF4192: Domain of unknown function (DUF4192)	84.32
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.84
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	83.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	83.73
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	83.13
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	82.86
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.73
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.63
PLN03218	1060	maturation of RBCL 1; Provisional	82.47
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.72
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	81.34
KOG2471	696	consensus TPR repeat-containing protein [General f	81.32
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.15
PRK10132	108	hypothetical protein; Provisional	80.78
PRK10941	269	hypothetical protein; Provisional	80.26
PLN03218	1060	maturation of RBCL 1; Provisional	80.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	80.21

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.2e-44  Score=274.84  Aligned_cols=140  Identities=44%  Similarity=0.681  Sum_probs=125.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176           16 FTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV   95 (164)
Q Consensus        16 ~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl   95 (164)
                      |..-+..||+..+.+...|+...+.+.+.++.+++|+|||+||||++..|+++||.+||+++++ .+|.++|||+||||+
T Consensus         1 ~~~~~~~p~a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAv   79 (149)
T KOG3364|consen    1 FSGSLKEPWAIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAV   79 (149)
T ss_pred             CCccccchhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHH
Confidence            4566889999877777766665555667889999999999999999999999999999999983 789999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 031176           96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGI  156 (164)
Q Consensus        96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~~  156 (164)
                      ||||+++|++|++|++.+|++||+|+||.+|++.|+++|+|||+|||+|+||++++++|.+
T Consensus        80 g~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegliGm~v~gGa~~~v~gl~  140 (149)
T KOG3364|consen   80 GHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGLIGMVVVGGAALAVGGLA  140 (149)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcceeeeeehhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988865554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=99.89  E-value=2.3e-23  Score=136.68  Aligned_cols=53  Identities=53%  Similarity=0.861  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhH
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV  139 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGl  139 (164)
                      |||+||||+||||+|||++|++|++.+|++||+|+||++|++.|+++|++||+
T Consensus         1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhccCC
Confidence            79999999999999999999999999999999999999999999999999996

>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A

Probab=99.36  E-value=1e-12  Score=79.37  Aligned_cols=33  Identities=36%  Similarity=0.635  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN   79 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~   79 (164)
                      ++++|||||+||||+++.|+++||.||+++++.
T Consensus         1 ~qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~   33 (35)
T PF14852_consen    1 PQTQFNYAWGLVKSNNREDQQEGIALLEELYRD   33 (35)
T ss_dssp             -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred             CcchhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999998875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.87  E-value=1.7e-08  Score=66.11  Aligned_cols=65  Identities=32%  Similarity=0.453  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      |.+|..++   +.++..+|++.++.++..  + ++..+++|.||..++++|+|++|+.+++++++..|+|+
T Consensus         1 ~~~a~~~~---~~g~~~~A~~~~~~~l~~--~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALY---QQGDYDEAIAAFEQALKQ--D-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHH---HCTHHHHHHHHHHHHHCC--S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHH---HcCCHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46788888   778999999999999996  3 46779999999999999999999999999999999985

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.75  E-value=7e-08  Score=63.69  Aligned_cols=67  Identities=24%  Similarity=0.464  Sum_probs=61.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAP  118 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP  118 (164)
                      ++++.+++|..+.   +.++..+|+..++..+..  +| ...+.+|++|++|+++| +|++|+++++++|+++|
T Consensus         2 ~a~~~~~~g~~~~---~~~~~~~A~~~~~~ai~~--~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYF---QQGDYEEAIEYFEKAIEL--DP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH--ST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5788899999999   788999999999999996  45 45699999999999999 89999999999999999

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.75  E-value=3.3e-07  Score=67.15  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=78.9

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +.+.+... ..++.++...+++|+++.   ..++..+++..++..+..  +| ...+.+|++|..|+..|++++|.++++
T Consensus        36 A~~~~~~~~~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        36 ALKLFQLLAAYDPYNSRYWLGLAACCQ---MLKEYEEAIDAYALAAAL--DP-DDPRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc--CC-CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33444444 446668899999999999   667888999999998875  34 456999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHhHh
Q 031176          112 QCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      .+++++|++.....+++.+...+
T Consensus       110 ~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552       110 LAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHHHhccccchHHHHHHHHHHHH
Confidence            99999999999888888776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.75  E-value=3e-08  Score=65.15  Aligned_cols=66  Identities=29%  Similarity=0.475  Sum_probs=58.6

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ..++..+|+++++.++..  +| +..+.++.||..|++.|+|++|+..+++++..+|+|+.+..|+..|
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            457889999999999986  34 5669999999999999999999999999999999999999998765

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.69  E-value=2.7e-07  Score=74.23  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. .-++.+.+..++||-+|..+.......+++++|++.+..  +|. ..+.+++||+.++++|+|++|..+|+++
T Consensus        94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DAN-EVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444 334557889999999886554444568999999999986  454 4589999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHh
Q 031176          114 LEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       114 L~~eP~n~Qa~~L~~~Ie~  132 (164)
                      |+.+|.+.+-..+-+.|+.
T Consensus       171 L~l~~~~~~r~~~i~~i~~  189 (198)
T PRK10370        171 LDLNSPRVNRTQLVESINM  189 (198)
T ss_pred             HhhCCCCccHHHHHHHHHH
Confidence            9999997766555455554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.65  E-value=9.4e-07  Score=67.45  Aligned_cols=88  Identities=10%  Similarity=0.095  Sum_probs=76.4

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+.++.+++|.++.   ..++..+|+..++..+..  +| ..-+.+|++++++.++|++++|+.+++++|++.|+|
T Consensus        52 ~~~P~~~~a~~~lg~~~~---~~g~~~~A~~~y~~Al~l--~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWM---MLKEYTTAINFYGHALML--DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             HcCCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            456668899999999999   788899999999999985  44 455999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHh
Q 031176          121 RQALGLKKTVEDRI  134 (164)
Q Consensus       121 ~Qa~~L~~~Ie~~~  134 (164)
                      .++..++..+....
T Consensus       126 ~~~~~~~~~~~~~l  139 (144)
T PRK15359        126 ASWSEIRQNAQIMV  139 (144)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99998888776543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.63  E-value=4.9e-07  Score=78.71  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=85.8

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++.+....+++|.+++   ..++..+|+..++..+..  +| ....++|.+|.+|+++|+|++|+.+
T Consensus        19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~---~~g~~~eAl~~~~~Al~l--~P-~~~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         19 ALAVDLYTQAIDLDPNNAELYADRAQANI---KLGNFTEAVADANKAIEL--DP-SLAKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            3445556666 556667899999999999   567889999999999986  34 5568999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          110 LEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      ++++|+++|+|.++..+...++.++..
T Consensus        93 ~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         93 LEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999888865

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.53  E-value=4.6e-07  Score=60.25  Aligned_cols=67  Identities=28%  Similarity=0.421  Sum_probs=59.8

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                      +.++..++++.++..+..  +| +....+++.|..++++|+|++|++.++++|+..|++.++..++..|+
T Consensus         7 ~~~~~~~A~~~~~~~l~~--~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l~   73 (73)
T PF13371_consen    7 QQEDYEEALEVLERALEL--DP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAMLN   73 (73)
T ss_pred             hCCCHHHHHHHHHHHHHh--Cc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhcC
Confidence            567889999999999986  45 45699999999999999999999999999999999999999988763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.3e-06  Score=74.86  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .....|.+. .-..++++..-.||.+|++|..+.+..++..+|.+.+..  ||.+. ..+||||.+++..|+|.+|...|
T Consensus       174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~i-ral~lLA~~afe~g~~~~A~~~W  250 (287)
T COG4235         174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANI-RALSLLAFAAFEQGDYAEAAAAW  250 (287)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccH-HHHHHHHHHHHHcccHHHHHHHH
Confidence            346677777 335568999999999999999999999999999999996  55554 89999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHH
Q 031176          111 EQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +.+|...|.|-.-..+-+.+
T Consensus       251 q~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         251 QMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHhcCCCCCchHHHHHHH
Confidence            99999999988777665544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.49  E-value=3.5e-06  Score=59.42  Aligned_cols=79  Identities=14%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      .+++.|.++.++.   ..++...|+.+++.++....+.....+.++.++..+.+++++++|.++++++++..|++.+++.
T Consensus        38 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        38 APNAHYWLGEAYY---AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             cHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            4688999999999   7778889999999988752222234688999999999999999999999999999999998776


Q ss_pred             HH
Q 031176          126 LK  127 (164)
Q Consensus       126 L~  127 (164)
                      -.
T Consensus       115 ~~  116 (119)
T TIGR02795       115 AQ  116 (119)
T ss_pred             HH
Confidence            53

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.40  E-value=6.4e-07  Score=51.37  Aligned_cols=33  Identities=33%  Similarity=0.704  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +.+|++|..|+++|+|++|+++++++|+++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            679999999999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.38  E-value=5.5e-06  Score=60.62  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+....+.+|+.++   ..++..+++++++.++..  +| ...+.++.+|..++++|+|++|..+++++++.+|++
T Consensus        11 ~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLY---QQGRYDEALKLFQLLAAY--DP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             cCChhhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            344456788999999999   567788999999998885  34 456999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHh
Q 031176          121 RQALGLKKTVEDRI  134 (164)
Q Consensus       121 ~Qa~~L~~~Ie~~~  134 (164)
                      .+..-..-.+-...
T Consensus        85 ~~~~~~la~~~~~~   98 (135)
T TIGR02552        85 PRPYFHAAECLLAL   98 (135)
T ss_pred             hHHHHHHHHHHHHc
Confidence            88877666555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.29  E-value=1.4e-06  Score=50.37  Aligned_cols=33  Identities=30%  Similarity=0.653  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +.||.+|..|+.+++|++|+.+++++|+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            579999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.23  E-value=9.3e-06  Score=67.11  Aligned_cols=90  Identities=22%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +++.|.+. ..++.+++....++|.|+   +.++..++.++|+.+...   .+...+.+..+|.+|.++|+|++|+.+++
T Consensus       165 A~~~~~~al~~~P~~~~~~~~l~~~li---~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~  238 (280)
T PF13429_consen  165 ALRDYRKALELDPDDPDARNALAWLLI---DMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLE  238 (280)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccc
Confidence            35555555 445668899999999999   555666666666665554   12334788899999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLKK  128 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~  128 (164)
                      ++++..|+|.......-
T Consensus       239 ~~~~~~p~d~~~~~~~a  255 (280)
T PF13429_consen  239 KALKLNPDDPLWLLAYA  255 (280)
T ss_dssp             HHHHHSTT-HHHHHHHH
T ss_pred             ccccccccccccccccc
Confidence            99999999998766443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.18  E-value=1.8e-05  Score=55.77  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +++.|..+-.+.   ..++..++++.++.++..+.+.....+++|.++..+++.++|+.|..+++.+++..|+++.
T Consensus         2 ~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (119)
T TIGR02795         2 EEAYYDAALLVL---KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK   74 (119)
T ss_pred             cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence            467888999998   6678899999999988863222333589999999999999999999999999999999753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.16  E-value=4.9e-05  Score=48.59  Aligned_cols=65  Identities=23%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP  118 (164)
                      .+.+.++.++.   ..++..+|+..++..+..  .| ...+.++.++..+...|++++|..+++.+++..|
T Consensus        35 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          35 DAYYNLAAAYY---KLGKYEEALEDYEKALEL--DP-DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHhC--CC-cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            44444555554   334455555555554443  12 1224555555555555555555555555555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.13  E-value=3.7e-05  Score=59.62  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ......|+++..+.   ..++.++|+..+++.+....++...-.+++.+|..++++|+|++|+.+++++++..|++..+.
T Consensus        33 ~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         33 KEAFVYYRDGMSAQ---ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            35667788888887   678888999999998875223333457999999999999999999999999999999998876


Q ss_pred             HHHHHHH
Q 031176          125 GLKKTVE  131 (164)
Q Consensus       125 ~L~~~Ie  131 (164)
                      ...-.+-
T Consensus       110 ~~lg~~~  116 (172)
T PRK02603        110 NNIAVIY  116 (172)
T ss_pred             HHHHHHH
Confidence            6554443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.10  E-value=9e-05  Score=56.39  Aligned_cols=91  Identities=15%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +.+.|.+. ..++......+++++.+.   ..++..++++.++..+.. .......+.++.++..+++.|+|++|..+++
T Consensus        84 A~~~~~~al~~~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521        84 AEDSFRRALTLNPNNGDVLNNYGTFLC---QQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444444 334456778888888888   566788888888887764 2223445778888999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLK  127 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~  127 (164)
                      ++++..|++..+....
T Consensus       160 ~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521       160 RALQIDPQRPESLLEL  175 (234)
T ss_pred             HHHHhCcCChHHHHHH
Confidence            9999999886554433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.08  E-value=1.6e-05  Score=66.08  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .+++..|.-|..++   ..++..+|++.|++++...-.++......|.||.+||++++|++|..+++++++..|+|+.+-
T Consensus        30 ~~~~~~Y~~A~~~~---~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         30 NPPSEIYATAQQKL---QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            47788889999999   677888999999999886444445567789999999999999999999999999999998664

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.07  E-value=2.3e-05  Score=59.70  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      +..+.+++++.   ..++..+++..++.++..  +| ...+.++.+|..+.++|+|++|..+++++++++|++..+..-.
T Consensus        25 ~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         25 ETVYASGYASW---QEGDYSRAVIDFSWLVMA--QP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            34677888888   778888999999999986  34 5669999999999999999999999999999999998776655


Q ss_pred             HHH
Q 031176          128 KTV  130 (164)
Q Consensus       128 ~~I  130 (164)
                      -.+
T Consensus        99 g~~  101 (144)
T PRK15359         99 GVC  101 (144)
T ss_pred             HHH
Confidence            443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.06  E-value=8.4e-05  Score=47.46  Aligned_cols=70  Identities=26%  Similarity=0.447  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      +.++.|..+.   ..++..+++..++..+..  .|. ....++.+|..++..++|++|.++++.+++..|.+..+.
T Consensus         2 ~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   71 (100)
T cd00189           2 ALLNLGNLYY---KLGDYDEALEYYEKALEL--DPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY   71 (100)
T ss_pred             HHHHHHHHHH---HHhcHHHHHHHHHHHHhc--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence            4677888888   467888999999998885  333 348999999999999999999999999999999998443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.02  E-value=0.00013  Score=58.64  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=83.9

Q ss_pred             CCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhh
Q 031176           23 PWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRT  100 (164)
Q Consensus        23 p~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl  100 (164)
                      |.++.++...+-..+.+. ..++.+.+..+.++..+.   ..++...|+..++..+..  +| +..+.++.+|.+ ++..
T Consensus        48 ~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~---~~g~~~~A~~a~~~Al~l--~P-~~~~~~~~lA~aL~~~~  121 (198)
T PRK10370         48 QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYL---WRNDYDNALLAYRQALQL--RG-ENAELYAALATVLYYQA  121 (198)
T ss_pred             cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhc
Confidence            444555556666666666 556678899999999999   788899999999998886  34 456999999997 4787


Q ss_pred             cc--hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176          101 GE--YAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       101 ~~--Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      |+  +++|++.++++|+.+|+|..+..+.-.+...
T Consensus       122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            88  5999999999999999999998887666543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.02  E-value=2.6e-05  Score=62.57  Aligned_cols=77  Identities=18%  Similarity=0.347  Sum_probs=62.9

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .+++..|..|..++   +.++..+|+..|+.+....-..+...++++.+|.+||+.++|+.|...++++++..|+++.+-
T Consensus         3 ~~~~~lY~~a~~~~---~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    3 DTAEALYQKALEAL---QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             --HHHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            46788999999999   788999999999999876444457789999999999999999999999999999999988643

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.99  E-value=3.7e-05  Score=52.85  Aligned_cols=60  Identities=25%  Similarity=0.390  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      .....|.+|.++.   +.++..+|+++++. ...  ++ ...++.|.+|.+++++|+|++|++++++
T Consensus        24 ~~~~~~~la~~~~---~~~~y~~A~~~~~~-~~~--~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   24 NSAYLYNLAQCYF---QQGKYEEAIELLQK-LKL--DP-SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHH---HTTHHHHHHHHHHC-HTH--HH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH---HCCCHHHHHHHHHH-hCC--CC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            4456666788888   66678888888877 332  12 3458888888888888888888888765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.99  E-value=0.00012  Score=59.16  Aligned_cols=90  Identities=13%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             hcCCCchHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-----------
Q 031176           41 NDDKQKSESIMRLSWALVHSRQA-------EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE-----------  102 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~-------~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~-----------  102 (164)
                      ..++.+.+...+.+.+|+..++-       .-+++||+-|++.+.-   .+..+|.+|.|+.+|+-++.           
T Consensus        19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~   95 (186)
T PF06552_consen   19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY   95 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred             HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence            55667889999999999876332       5678888888888886   45788999999999998876           


Q ss_pred             hHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHhH
Q 031176          103 YAKSRQILEQCLEIAPDWRQAL----------GLKKTVEDR  133 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~----------~L~~~Ie~~  133 (164)
                      |++|..|.+++.+.+|+|.-++          +|+..|.+.
T Consensus        96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~  136 (186)
T PF06552_consen   96 FEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8999999999999999998554          555555554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.99  E-value=5.9e-05  Score=60.33  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=65.9

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++.+.+..|+.+.++.   +.++...|+..++.++....+.+...+.+|.+|..|++.++|++|+..++.+++..|++..
T Consensus        29 ~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        29 EEWPAEELYEEAKEAL---DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             ccCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            3557899999999999   5677889999999988863222344589999999999999999999999999999999886


Q ss_pred             H
Q 031176          123 A  123 (164)
Q Consensus       123 a  123 (164)
                      +
T Consensus       106 ~  106 (235)
T TIGR03302       106 A  106 (235)
T ss_pred             h
Confidence            3

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.97  E-value=0.00016  Score=61.11  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .....|+.|.+|+..  .+++.+++..|+.++...-+.....+.+|+||..||..|+|++|+.+++.+++..|+++.+-
T Consensus       141 ~e~~~Y~~A~~l~~~--~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~  217 (263)
T PRK10803        141 DANTDYNAAIALVQD--KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA  217 (263)
T ss_pred             CHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            456667777777422  25566777777777765212222357777777777777777777777777777777754333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.95  E-value=4.1e-05  Score=60.51  Aligned_cols=72  Identities=10%  Similarity=0.093  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      .-+..+.||+.|.   +.+++..|..+++-++.-  +| ...++||.|+..+-.+|+|++|..++.+++.++|+|+..
T Consensus        34 ~l~~lY~~A~~ly---~~G~l~~A~~~f~~L~~~--Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         34 PLNTLYRYAMQLM---EVKEFAGAARLFQLLTIY--DA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            4566778888888   777888888888887775  44 555888888888888888888888888888888888754

>PRK12370 invasion protein regulator; Provisional

Probab=97.95  E-value=0.00012  Score=67.01  Aligned_cols=90  Identities=13%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176           28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS  106 (164)
Q Consensus        28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A  106 (164)
                      .....+...+.+. .-++.++++.+.+|..+.   ..++..+|+..++..+..  +| +..+.+|++|..+...|+|++|
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~G~~~eA  391 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT---IHSEYIVGSLLFKQANLL--SP-ISADIKYYYGWNLFMAGQLEEA  391 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            3456667777777 567778899999998888   456788999999999986  35 4458999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHH
Q 031176          107 RQILEQCLEIAPDWRQA  123 (164)
Q Consensus       107 ~~~~~~lL~~eP~n~Qa  123 (164)
                      ..+++++++++|.+..+
T Consensus       392 i~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        392 LQTINECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHHHHhcCCCChhh
Confidence            99999999999998755

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.95  E-value=7.3e-05  Score=73.33  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      ++..|.+. ..++.++...++++++|.   +.++..+++++++..+..  +| +..+.+|+||.++.++|+|++|+.+++
T Consensus       628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~---~~G~~eeAi~~l~~AL~l--~P-~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        628 AVSDLRAALELEPNNSNYQAALGYALW---DSGDIAQSREMLERAHKG--LP-DDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34455555 556678899999999999   567789999999999985  45 556999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLKK  128 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~  128 (164)
                      ++++++|++-+.....-
T Consensus       702 ~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        702 LVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHhcCCCCchhhhhhh
Confidence            99999999976654333

>PRK12370 invasion protein regulator; Provisional

Probab=97.92  E-value=0.00014  Score=66.63  Aligned_cols=100  Identities=9%  Similarity=-0.010  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHh------cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVH------SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGY   97 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~------S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~   97 (164)
                      .+++.+..+...|++. ..++..+.+.+.+|+++..      +...++..+|+..++..+..  +| +..++++.+|..+
T Consensus       272 ~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP-~~~~a~~~lg~~~  348 (553)
T PRK12370        272 YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DH-NNPQALGLLGLIN  348 (553)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHH
Confidence            4566777777777777 5666678888888887652      23456789999999999986  45 4458999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           98 YRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        98 ~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      ...|+|++|..+++++|+++|+|.++....
T Consensus       349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  378 (553)
T PRK12370        349 TIHSEYIVGSLLFKQANLLSPISADIKYYY  378 (553)
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999999875544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.91  E-value=1.8e-05  Score=54.46  Aligned_cols=64  Identities=23%  Similarity=0.381  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQ-QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~-~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      .++++.|+.+++.++..  +|.+ ..+++|+||.+|+++|+|++|..+++. ++.+|.|.+..-|.-.
T Consensus         2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence            46789999999999986  3422 557889999999999999999999999 9999998777665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.88  E-value=0.00017  Score=66.38  Aligned_cols=76  Identities=14%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++...++.+++|+++.   ..++..+++..++..+..  +| ...+++|+++..|+.+|+|++|+.+++++|+++|+|..
T Consensus       361 ~P~~~~~~~~la~~~~---~~g~~~eA~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~  434 (615)
T TIGR00990       361 DPRVTQSYIKRASMNL---ELGDPDKAEEDFDKALKL--NS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF  434 (615)
T ss_pred             CCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence            4446778888888888   566788899999988875  34 44589999999999999999999999999999998866


Q ss_pred             HH
Q 031176          123 AL  124 (164)
Q Consensus       123 a~  124 (164)
                      +.
T Consensus       435 ~~  436 (615)
T TIGR00990       435 SH  436 (615)
T ss_pred             HH
Confidence            54

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.88  E-value=3e-05  Score=43.83  Aligned_cols=33  Identities=30%  Similarity=0.617  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      |++|.+|.+++++|++++|+++++++++..|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            689999999999999999999999999999974

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.88  E-value=0.00028  Score=56.43  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh--------cchHHHHHHHHHHHhhCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT--------GEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl--------~~Y~~A~~~~~~lL~~eP  118 (164)
                      .++.+.+|.++.   ..++..+|+..++.+++...+.....+.+|.++.++++.        +++++|++.++.+++..|
T Consensus        70 ~~a~~~la~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        70 EQAQLDLAYAYY---KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            367899999998   678899999999999986333344456899999999987        899999999999999999


Q ss_pred             CcHHHHHHH
Q 031176          119 DWRQALGLK  127 (164)
Q Consensus       119 ~n~Qa~~L~  127 (164)
                      ++..+....
T Consensus       147 ~~~~~~~a~  155 (235)
T TIGR03302       147 NSEYAPDAK  155 (235)
T ss_pred             CChhHHHHH
Confidence            998664443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.88  E-value=0.00012  Score=61.83  Aligned_cols=81  Identities=12%  Similarity=0.137  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      +++.|-++.++.   ..++...|+..++.++....+.+...|++|.++..+.++|++++|+++++.+++..|+...+..=
T Consensus       180 ~~A~y~LG~~y~---~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        180 PNANYWLGQLNY---NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            689999999999   77889999999999997644445678999999999999999999999999999999999988766


Q ss_pred             HHHH
Q 031176          127 KKTV  130 (164)
Q Consensus       127 ~~~I  130 (164)
                      ++.+
T Consensus       257 ~~rL  260 (263)
T PRK10803        257 QKRL  260 (263)
T ss_pred             HHHH
Confidence            5554

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.87  E-value=0.00018  Score=60.85  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=34.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .+++.++++..+.   ..++...|++.++..+..  +| +....++++++.++..|+|++|.+.++++++.+|++.
T Consensus        97 ~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         97 MADAYNYLGIYLT---QAGNFDAAYEAFDSVLEL--DP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4445555555444   344444555555555443  22 2234555555555555555555555555555555554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.87  E-value=0.00044  Score=52.57  Aligned_cols=80  Identities=25%  Similarity=0.317  Sum_probs=65.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      .....++++.++.   ..++..+++..++..+..  +| ...+.++.+|..+++.|+|++|.++++++++..|.+.....
T Consensus       134 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       134 PARSLENAGLCAL---KAGDFDKAEKYLTRALQI--DP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             chHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4567888888888   667788999999998885  34 34578999999999999999999999999999998877765


Q ss_pred             HHHHHH
Q 031176          126 LKKTVE  131 (164)
Q Consensus       126 L~~~Ie  131 (164)
                      +.-.+.
T Consensus       208 ~~~~~~  213 (234)
T TIGR02521       208 LGIRIA  213 (234)
T ss_pred             HHHHHH
Confidence            444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.83  E-value=6.1e-05  Score=46.36  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      +.++.||..|.++|++++|++.++++|+.+|+|..+....
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            5789999999999999999999999999999999887543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.82  E-value=0.00013  Score=56.82  Aligned_cols=78  Identities=15%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ..+++..|+-|-..+   +.+++.+|++.|+.|..+.-.++-....-..|+-+||+.++|+.|+..+++++++.|.++++
T Consensus         7 ~~~~~~ly~~a~~~l---~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    7 DKSPQELYQEAQEAL---QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            347888999999999   77899999999999877643334456788999999999999999999999999999999875


Q ss_pred             H
Q 031176          124 L  124 (164)
Q Consensus       124 ~  124 (164)
                      -
T Consensus        84 d   84 (142)
T PF13512_consen   84 D   84 (142)
T ss_pred             c
Confidence            3

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.80  E-value=3.7e-05  Score=44.10  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +.||.+|..|.++|+|++|.++++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468999999999999999999999999999965

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.79  E-value=0.00046  Score=58.31  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176           28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS  106 (164)
Q Consensus        28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A  106 (164)
                      ..|.++.+...+. .+.+..++..|+.+..+.   ..++..+|+..++..+..  +| +..+.+++++..+.++|+|++|
T Consensus        44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         44 VILARLNQILASRDLTDEERAQLHYERGVLYD---SLGLRALARNDFSQALAL--RP-DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             HHHHHHHHHHccccCCcHhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            3566666666544 333445788999999888   567788999999999986  44 5569999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHH
Q 031176          107 RQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus       107 ~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ...++++|+++|++..+...+-.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999877544433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.76  E-value=0.00032  Score=66.62  Aligned_cols=95  Identities=9%  Similarity=-0.019  Sum_probs=79.1

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .++..+++. ...+.+++..+.+|..+.   ..++..+|++.|+..+..  +| +..+.+|.+|..+.++++|++|...+
T Consensus       377 eA~~~l~~al~~~P~n~~l~~~lA~l~~---~~g~~~~A~~~l~~al~l--~P-d~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        377 QAEMRARELAYNAPGNQGLRIDYASVLQ---ARGWPRAAENELKKAEVL--EP-RNINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            344455554 445557889999999888   566789999999998885  45 44579999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHh
Q 031176          111 EQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +.+++.+|+|..++.|.+.-+-
T Consensus       451 ~~ll~~~Pd~~~~~~~~~~~~~  472 (765)
T PRK10049        451 DDVVAREPQDPGVQRLARARDV  472 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHh
Confidence            9999999999999999998754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.75  E-value=0.00094  Score=60.58  Aligned_cols=68  Identities=21%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--REKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      +..++..+|++.+|.   ..+++++|+..++..+..  +|.+.  +-+||++|.+|.++|++++|+.+++++|++
T Consensus        72 P~~a~a~~NLG~AL~---~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLF---SKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            446899999999999   788999999999999986  35332  235999999999999999999999999987

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.72  E-value=0.00051  Score=52.81  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      .....++.+.++.   ..++..+|+..++..+....++......++.+|+.+.+.|+|++|+.+++++|+++|.+..+..
T Consensus        34 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~  110 (168)
T CHL00033         34 EAFTYYRDGMSAQ---SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN  110 (168)
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            3455566666666   4567889999999988753333334468999999999999999999999999999999987655


Q ss_pred             HHHHHHh
Q 031176          126 LKKTVED  132 (164)
Q Consensus       126 L~~~Ie~  132 (164)
                      ..-.|..
T Consensus       111 ~la~i~~  117 (168)
T CHL00033        111 NMAVICH  117 (168)
T ss_pred             HHHHHHH
Confidence            4444444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.68  E-value=0.0005  Score=51.76  Aligned_cols=81  Identities=22%  Similarity=0.289  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC---cHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD---WRQA  123 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~---n~Qa  123 (164)
                      ++..|+.||++=   ..++-++||.+.+..+...-+++..++++..||-.+-.+|+|++|...++..++..|+   +...
T Consensus         1 ~~~~~~~A~a~d---~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l   77 (120)
T PF12688_consen    1 PRALYELAWAHD---SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL   77 (120)
T ss_pred             CchHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence            357899999998   7788899999999998864455677899999999999999999999999999999999   6666


Q ss_pred             HHHHHHH
Q 031176          124 LGLKKTV  130 (164)
Q Consensus       124 ~~L~~~I  130 (164)
                      ..+..+.
T Consensus        78 ~~f~Al~   84 (120)
T PF12688_consen   78 RVFLALA   84 (120)
T ss_pred             HHHHHHH
Confidence            6554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.65  E-value=0.00069  Score=61.46  Aligned_cols=87  Identities=13%  Similarity=0.158  Sum_probs=69.1

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      ....|.+. ..++.+.++.+.+|+.+.   ..++..+|+++++..+..  +| ...+.+++++..+.+.|+|++|..+++
T Consensus       144 A~~~~~~a~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~  217 (899)
T TIGR02917       144 AQKSYEQALAIDPRSLYAKLGLAQLAL---AENRFDEARALIDEVLTA--DP-GNVDALLLKGDLLLSLGNIELALAAYR  217 (899)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34444444 445557788999999998   566888899999998875  34 456899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHH
Q 031176          112 QCLEIAPDWRQALG  125 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~  125 (164)
                      ++++.+|++.++..
T Consensus       218 ~a~~~~p~~~~~~~  231 (899)
T TIGR02917       218 KAIALRPNNPAVLL  231 (899)
T ss_pred             HHHhhCCCCHHHHH
Confidence            99999999876543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.65  E-value=0.0006  Score=61.89  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ...++.+.+..+++|.+.+..+    .+++++++..+..  .| +..+.++.++..++++|++++|.+++++
T Consensus       790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~  862 (899)
T TIGR02917       790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKL--AP-NIPAILDTLGWLLVEKGEADRALPLLRK  862 (899)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444444 3445566777777888774443    4588888887775  23 3457788888888888888888888888


Q ss_pred             HHhhCCCcHHHHHH
Q 031176          113 CLEIAPDWRQALGL  126 (164)
Q Consensus       113 lL~~eP~n~Qa~~L  126 (164)
                      +++..|.|..+...
T Consensus       863 a~~~~~~~~~~~~~  876 (899)
T TIGR02917       863 AVNIAPEAAAIRYH  876 (899)
T ss_pred             HHhhCCCChHHHHH
Confidence            88888887665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.64  E-value=0.00066  Score=62.47  Aligned_cols=89  Identities=13%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|.+. ..++..+++.++++.++.   ..++..+|+..++..+..  +| .....+++||..++++|+|++|+.+++
T Consensus       384 A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~kal~l--~P-~~~~~~~~la~~~~~~g~~~eA~~~~~  457 (615)
T TIGR00990       384 AEEDFDKALKLNSEDPDIYYHRAQLHF---IKGEFAQAGKDYQKSIDL--DP-DFIFSHIQLGVTQYKEGSIASSMATFR  457 (615)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--Cc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33444444 445557788888888888   567788999999998885  34 445788899999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLK  127 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~  127 (164)
                      ++++..|++..+....
T Consensus       458 ~al~~~P~~~~~~~~l  473 (615)
T TIGR00990       458 RCKKNFPEAPDVYNYY  473 (615)
T ss_pred             HHHHhCCCChHHHHHH
Confidence            9999999987654433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.58  E-value=0.0003  Score=47.22  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCC-CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSP-PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~-~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      ...+.+++|..+.   ..++..+|+..+++.+..   .++ .+..-.+++.+|..|+++|+|++|+++.++++++
T Consensus         4 ~a~~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYR---ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3567889999999   777888888888887642   111 1234679999999999999999999999999986

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.56  E-value=0.00062  Score=59.37  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +.-|-.+.   ..++..+|++++++.+..  +| ...++++++|.+|.++|+|++|+.+++++|+++|++.++.-.+-.+
T Consensus         6 ~~~a~~a~---~~~~~~~Ai~~~~~Al~~--~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~   79 (356)
T PLN03088          6 EDKAKEAF---VDDDFALAVDLYTQAIDL--DP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA   79 (356)
T ss_pred             HHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            34455566   567889999999999986  44 4569999999999999999999999999999999999887666555


Q ss_pred             HhH
Q 031176          131 EDR  133 (164)
Q Consensus       131 e~~  133 (164)
                      --.
T Consensus        80 ~~~   82 (356)
T PLN03088         80 CMK   82 (356)
T ss_pred             HHH
Confidence            433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.47  E-value=0.0014  Score=62.22  Aligned_cols=87  Identities=20%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|++. ..++.+++..+.++.+++   ..++..+|+..|++++..  .|.+. + ++.+|..+.+.|++++|+.++++
T Consensus        69 ~~~~~~al~~~P~~~~a~~~la~~l~---~~g~~~eA~~~l~~~l~~--~P~~~-~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049         69 LTLWQKALSLEPQNDDYQRGLILTLA---DAGQYDEALVKAKQLVSG--APDKA-N-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCCCH-H-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            4445544 445667888889998888   667788999999999986  45444 5 99999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHH
Q 031176          113 CLEIAPDWRQALGLK  127 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~  127 (164)
                      +++..|+|.++....
T Consensus       142 al~~~P~~~~~~~~l  156 (765)
T PRK10049        142 ALPRAPQTQQYPTEY  156 (765)
T ss_pred             HHHhCCCCHHHHHHH
Confidence            999999998875543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.45  E-value=0.0016  Score=61.12  Aligned_cols=94  Identities=17%  Similarity=0.138  Sum_probs=52.9

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAED-VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d-~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ..++..|.+. ..++.+++..+++|..+....+..+ ..+|+..++..+..  +| +..+.++.+|..+.+.|+|++|+.
T Consensus       229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~g~~~eA~~  305 (656)
T PRK15174        229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS-DNVRIVTLYADALIRTGQNEKAIP  305 (656)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4445555555 3344456666666666664443322 22466666666653  23 334666666666666666666666


Q ss_pred             HHHHHHhhCCCcHHHHHHH
Q 031176          109 ILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~  127 (164)
                      +++++++++|+|.++....
T Consensus       306 ~l~~al~l~P~~~~a~~~L  324 (656)
T PRK15174        306 LLQQSLATHPDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHhCCCCHHHHHHH
Confidence            6666666666666554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.44  E-value=0.0021  Score=54.61  Aligned_cols=76  Identities=24%  Similarity=0.164  Sum_probs=54.4

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++.+.++.+.++..+.   ..++..+|+++++..+..  +|....+.++.|+.+|++.|++++|..+++++++..|++..
T Consensus       210 ~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~  284 (389)
T PRK11788        210 DPQCVRASILLGDLAL---AQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL  284 (389)
T ss_pred             CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            3445667777777777   455677788888887764  34444566778888888888888888888888888887654


Q ss_pred             H
Q 031176          123 A  123 (164)
Q Consensus       123 a  123 (164)
                      +
T Consensus       285 ~  285 (389)
T PRK11788        285 L  285 (389)
T ss_pred             H
Confidence            4

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.40  E-value=0.0033  Score=58.91  Aligned_cols=85  Identities=15%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      +..|.+. ..++.+..+.+++++.+.   ..++..+|+..++..+..  +| +..+.+++|+..+.+.|+|++|+..+++
T Consensus       270 ~~~~~~Al~l~P~~~~a~~~lg~~l~---~~g~~~eA~~~l~~al~l--~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        270 AEHWRHALQFNSDNVRIVTLYADALI---RTGQNEKAIPLLQQSLAT--HP-DLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444 445557788888888888   556777888888887775  34 4457888888888888888888888888


Q ss_pred             HHhhCCCcHHHH
Q 031176          113 CLEIAPDWRQAL  124 (164)
Q Consensus       113 lL~~eP~n~Qa~  124 (164)
                      +++.+|++..+.
T Consensus       344 al~~~P~~~~~~  355 (656)
T PRK15174        344 LAREKGVTSKWN  355 (656)
T ss_pred             HHHhCccchHHH
Confidence            888888876544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.39  E-value=0.0032  Score=48.72  Aligned_cols=68  Identities=21%  Similarity=0.343  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc--------------hHHHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE--------------YAKSRQILEQ  112 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~--------------Y~~A~~~~~~  112 (164)
                      ....+++|.++.   ..++..+|++.++..+..  .| .....++.++..+.++++              |++|++++++
T Consensus        72 ~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~  145 (172)
T PRK02603         72 SYILYNMGIIYA---SNGEHDKALEYYHQALEL--NP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ  145 (172)
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence            467888888888   567788999999998885  34 456889999999999998              7899999999


Q ss_pred             HHhhCCCc
Q 031176          113 CLEIAPDW  120 (164)
Q Consensus       113 lL~~eP~n  120 (164)
                      +++.+|+|
T Consensus       146 a~~~~p~~  153 (172)
T PRK02603        146 AIRLAPNN  153 (172)
T ss_pred             HHhhCchh
Confidence            99999998

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.38  E-value=0.00067  Score=56.02  Aligned_cols=76  Identities=17%  Similarity=0.114  Sum_probs=47.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ++.....+++.+.+   .++..++.++|+.+... ...+....+|+.+|..+.+.|++++|+++++++|+.+|+|+++..
T Consensus       109 ~~~~l~~~l~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~  184 (280)
T PF13429_consen  109 DPRYLLSALQLYYR---LGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN  184 (280)
T ss_dssp             ---------H-HHH---TT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             ccchhhHHHHHHHH---HhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            34555566676664   45566677777765543 223355688889999999999999999999999999999998764

>smart00028 TPR Tetratricopeptide repeats

Probab=97.37  E-value=0.00041  Score=36.52  Aligned_cols=33  Identities=33%  Similarity=0.645  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ++++.+|..++.+++|++|..+++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999999974

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.37  E-value=0.0008  Score=43.97  Aligned_cols=49  Identities=20%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      -+.|+.+|..+++.|+|++|+.+++++++++|+|..+.--.-.+-....
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            3789999999999999999999999999999999998777766655554

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.37  E-value=0.0054  Score=48.53  Aligned_cols=118  Identities=11%  Similarity=0.039  Sum_probs=84.8

Q ss_pred             hhcccccCCCCCCC---CC-HHHHHHH----------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHH
Q 031176           11 SIGSFFTGGDQIPW---CD-RDIIAGC----------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRG   69 (164)
Q Consensus        11 ~~~~~~~~~~~lp~---~~-~~~l~~~----------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~g   69 (164)
                      .+.+||.+|-.|.-   .+ ++++..+                ++.|+-. .-++.  ...+-|.+++++. ..+++.+|
T Consensus        12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q-~~g~~~~A   88 (157)
T PRK15363         12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQ-AQKHWGEA   88 (157)
T ss_pred             HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHH-HHhhHHHH
Confidence            56678887765544   56 6666653                2222222 22333  3444445555543 58899999


Q ss_pred             HHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176           70 IAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus        70 i~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      |......+.-  +| +.-..+||+|+++.++|+.+.|+++.+.++..--++++...|++..+.-.
T Consensus        89 I~aY~~A~~L--~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         89 IYAYGRAAQI--KI-DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHHhc--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            9999987775  35 34489999999999999999999999999999989999999998877653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.36  E-value=0.00053  Score=44.50  Aligned_cols=45  Identities=29%  Similarity=0.399  Sum_probs=40.2

Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      |.+|..+++.|+|++|+++++++++.+|+|.++.-+.-.+.-...
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g   45 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG   45 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999999999988877766443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.0033  Score=54.34  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +.++--+=|-|-++.   +-+++..||+=.+..+..  || +-...|-=|.++|+-+|+|++|.+++..+|.++|+|.-+
T Consensus       112 P~nAVyycNRAAAy~---~Lg~~~~AVkDce~Al~i--Dp-~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  112 PTNAVYYCNRAAAYS---KLGEYEDAVKDCESALSI--DP-HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             CCcchHHHHHHHHHH---HhcchHHHHHHHHHHHhc--Ch-HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence            334555556677777   788999999999998986  44 666888899999999999999999999999999999988


Q ss_pred             HHHHHHHHhHhh
Q 031176          124 LGLKKTVEDRIA  135 (164)
Q Consensus       124 ~~L~~~Ie~~~~  135 (164)
                      ++=++..+.+..
T Consensus       186 K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  186 KSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHHHHHHhc
Confidence            887777777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.26  E-value=0.0054  Score=49.12  Aligned_cols=96  Identities=19%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc----------
Q 031176           33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE----------  102 (164)
Q Consensus        33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~----------  102 (164)
                      |++...+...++-.+++.|.+|++..   ..++...|+..++.++...-+.+...+++|.++++++++..          
T Consensus        28 f~~l~~~~P~s~~a~~A~l~la~a~y---~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~  104 (203)
T PF13525_consen   28 FEKLIDRYPNSPYAPQAQLMLAYAYY---KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQT  104 (203)
T ss_dssp             HHHHHHH-TTSTTHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---H
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChH
Confidence            33333333444557899999999999   66789999999999888644445667899999999998753          


Q ss_pred             -hHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176          103 -YAKSRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus       103 -Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                       ..+|...++.+++.-|+.+-+..-++.|.
T Consensus       105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~  134 (203)
T PF13525_consen  105 STRKAIEEFEELIKRYPNSEYAEEAKKRLA  134 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence             34899999999999999986665555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.26  E-value=0.0065  Score=51.59  Aligned_cols=81  Identities=20%  Similarity=0.156  Sum_probs=49.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ..+..+...++..+.   ..++..+|++.++.++.....+..  ...+++.++..+++.+++++|.++++++++..|++.
T Consensus       138 ~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  214 (389)
T PRK11788        138 DFAEGALQQLLEIYQ---QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV  214 (389)
T ss_pred             cchHHHHHHHHHHHH---HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence            335566666676666   456677777777776664211111  122444566677777777777777777777777766


Q ss_pred             HHHHHH
Q 031176          122 QALGLK  127 (164)
Q Consensus       122 Qa~~L~  127 (164)
                      ++..+.
T Consensus       215 ~~~~~l  220 (389)
T PRK11788        215 RASILL  220 (389)
T ss_pred             HHHHHH
Confidence            554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.24  E-value=0.0025  Score=60.59  Aligned_cols=76  Identities=16%  Similarity=0.112  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      +++.+++|..+.   ..+..++|..+|+.++..   .++...++.++|.+..+++.+++|+..++++|+.+|+|..+..+
T Consensus        86 ~~~~~~La~i~~---~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         86 ELFQVLVARALE---AAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HHHHHHHHHHHH---HcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            556666666666   455555566666665553   23444666666666666666666666666666666666555544


Q ss_pred             HH
Q 031176          127 KK  128 (164)
Q Consensus       127 ~~  128 (164)
                      +-
T Consensus       160 ~a  161 (694)
T PRK15179        160 EA  161 (694)
T ss_pred             HH
Confidence            43

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.23  E-value=0.0017  Score=54.92  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=65.1

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ++...++-+...+   +.++..+|+..|+.+.+.+-..+-.+.....|+-+|||.++|+.|+.++++.+++.|.++.+
T Consensus        33 p~~~LY~~g~~~L---~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTEL---QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            5677777788888   88999999999999888653334558999999999999999999999999999999998854

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.22  E-value=0.0043  Score=61.19  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      +.+..+++|.++.   +.++..+|+..++..+..  +| +..+.++.|+..+...|++++|+.+++++|+++|+|.++.
T Consensus       608 ~~~a~~~LA~~l~---~lG~~deA~~~l~~AL~l--~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~  680 (987)
T PRK09782        608 SANAYVARATIYR---QRHNVPAAVSDLRAALEL--EP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI  680 (987)
T ss_pred             CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3666667776666   556666777777776664  33 3336777777777777777777777777777777776555

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.22  E-value=0.0022  Score=53.96  Aligned_cols=90  Identities=14%  Similarity=0.229  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ....++.|+.. +.++.+.+..-||.|=|.   ..+...+|...|+..+.. -.-..+.+.+=++.++.+|.|+.+.|+.
T Consensus        85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC---~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~  160 (250)
T COG3063          85 NDLADESYRKALSLAPNNGDVLNNYGAFLC---AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEE  160 (250)
T ss_pred             hhhHHHHHHHHHhcCCCccchhhhhhHHHH---hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence            45568888888 667778999999999999   566889999999998886 2335677999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHH
Q 031176          109 ILEQCLEIAPDWRQA  123 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa  123 (164)
                      +.++.|+++|++.-+
T Consensus       161 ~l~raL~~dp~~~~~  175 (250)
T COG3063         161 YLKRALELDPQFPPA  175 (250)
T ss_pred             HHHHHHHhCcCCChH
Confidence            999999999998754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.22  E-value=0.0044  Score=46.68  Aligned_cols=80  Identities=23%  Similarity=0.169  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ...+.|.+|-.++   ..++..+|++.|+.++....++.-..-+.+.||..++..|+|++|+..++. ..-.|-...+..
T Consensus        47 a~~A~l~lA~~~~---~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~  122 (145)
T PF09976_consen   47 AALAALQLAKAAY---EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAE  122 (145)
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHH
Confidence            5788999999999   778999999999999987434444456788899999999999999999876 222333334444


Q ss_pred             HHHH
Q 031176          126 LKKT  129 (164)
Q Consensus       126 L~~~  129 (164)
                      |+-.
T Consensus       123 ~~Gd  126 (145)
T PF09976_consen  123 LLGD  126 (145)
T ss_pred             HHHH
Confidence            4333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.20  E-value=0.00061  Score=40.30  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHH--hhCCCc
Q 031176           89 KLYLLAVGYYRTGEYAKSRQILEQCL--EIAPDW  120 (164)
Q Consensus        89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL--~~eP~n  120 (164)
                      +|.+||..|.++|+|++|..+++++|  ..+|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            57899999999999999999999955  555554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.19  E-value=0.0064  Score=46.68  Aligned_cols=72  Identities=13%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------hhcchH-------HHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYY-------RTGEYA-------KSRQILEQ  112 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~-------kl~~Y~-------~A~~~~~~  112 (164)
                      +.+.+++|.++.   ..++..+|+..++..+..   ++...+.++.++..++       ++|+|+       +|+.++++
T Consensus        72 ~~~~~~lg~~~~---~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  145 (168)
T CHL00033         72 SYILYNIGLIHT---SNGEHTKALEYYFQALER---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ  145 (168)
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            458889999888   556778899999998885   3344588999999999       777776       66666778


Q ss_pred             HHhhCCCcHHHH
Q 031176          113 CLEIAPDWRQAL  124 (164)
Q Consensus       113 lL~~eP~n~Qa~  124 (164)
                      ++..+|++....
T Consensus       146 a~~~~p~~~~~~  157 (168)
T CHL00033        146 AIALAPGNYIEA  157 (168)
T ss_pred             HHHhCcccHHHH
Confidence            899999876443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.14  E-value=0.0031  Score=60.03  Aligned_cols=86  Identities=12%  Similarity=0.157  Sum_probs=72.6

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      +..+... +-.+.+.++..++|-.|.   +.+.+++|....+.++..  +| +..+.++.+|.+.-++|+|++|..++++
T Consensus       106 ~~~l~~~~~~~Pd~~~a~~~~a~~L~---~~~~~eeA~~~~~~~l~~--~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~  179 (694)
T PRK15179        106 LAVWRGIHQRFPDSSEAFILMLRGVK---RQQGIEAGRAEIELYFSG--GS-SSAREILLEAKSWDEIGQSEQADACFER  179 (694)
T ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHhhc--CC-CCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3334444 446678999999999999   888999999999999985  44 5669999999999999999999999999


Q ss_pred             HHhhCCCcHHHHH
Q 031176          113 CLEIAPDWRQALG  125 (164)
Q Consensus       113 lL~~eP~n~Qa~~  125 (164)
                      +|...|++.++.-
T Consensus       180 ~~~~~p~~~~~~~  192 (694)
T PRK15179        180 LSRQHPEFENGYV  192 (694)
T ss_pred             HHhcCCCcHHHHH
Confidence            9999998876643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.01  E-value=0.0073  Score=53.08  Aligned_cols=67  Identities=12%  Similarity=0.110  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      ++..+++..++..++.  .| +..+.++.+|-.+++.++|++|+++.+.+++.+|++.....|-...+..
T Consensus       308 ~~~~~al~~~e~~lk~--~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~  374 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQ--HG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL  374 (398)
T ss_pred             CChHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence            5667788888888875  34 4558999999999999999999999999999999999988777776654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0074  Score=54.00  Aligned_cols=84  Identities=19%  Similarity=0.315  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH---
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA---  123 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa---  123 (164)
                      ..+..|+|.|++   +-++...||+.....|.-  +| ...-+||=-+-++.-+++|+.|+..++++++++|+|.-+   
T Consensus       257 ~~~~lNlA~c~l---Kl~~~~~Ai~~c~kvLe~--~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e  330 (397)
T KOG0543|consen  257 LACHLNLAACYL---KLKEYKEAIESCNKVLEL--DP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE  330 (397)
T ss_pred             HHHhhHHHHHHH---hhhhHHHHHHHHHHHHhc--CC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            456678999999   566777999999998885  34 455899999999999999999999999999999999744   


Q ss_pred             -HHHHHHHHhHhhh
Q 031176          124 -LGLKKTVEDRIAK  136 (164)
Q Consensus       124 -~~L~~~Ie~~~~~  136 (164)
                       ..|++.+.+...+
T Consensus       331 l~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  331 LIKLKQKIREYEEK  344 (397)
T ss_pred             HHHHHHHHHHHHHH
Confidence             4555555554443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.94  E-value=0.0088  Score=59.33  Aligned_cols=66  Identities=21%  Similarity=0.320  Sum_probs=56.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ..+.+++   ..++..+|+..|++.+..  +| +..+.++.|+..|++.|+|++|+.+++++|+.+|++...
T Consensus       274 ~~G~~~~---~~g~~~~A~~~l~~aL~~--~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~  339 (1157)
T PRK11447        274 AQGLAAV---DSGQGGKAIPELQQAVRA--NP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR  339 (1157)
T ss_pred             HHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence            3466676   567788999999999986  34 446999999999999999999999999999999998643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.86  E-value=0.0019  Score=60.58  Aligned_cols=77  Identities=14%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHhc--CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           47 SESIMRLSWALVHS--RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        47 ~~~~F~yA~aLi~S--~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      -+..|.|||+|..+  ...++.++|..-++..+.-  +| +.=.+||-|++.|.|++.|+.|.-++++++++.|.|.+-+
T Consensus       450 ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~  526 (638)
T KOG1126|consen  450 LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL  526 (638)
T ss_pred             cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence            35579999999976  3456888999999998885  44 4558999999999999999999999999999999999755


Q ss_pred             HH
Q 031176          125 GL  126 (164)
Q Consensus       125 ~L  126 (164)
                      -=
T Consensus       527 ~~  528 (638)
T KOG1126|consen  527 CH  528 (638)
T ss_pred             hh
Confidence            43

>PRK11906 transcriptional regulator; Provisional

Probab=96.81  E-value=0.026  Score=51.41  Aligned_cols=99  Identities=11%  Similarity=0.129  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH
Q 031176           27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK  105 (164)
Q Consensus        27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~  105 (164)
                      +.+....-+.-.+. .-|..++++.|..+.++..+.   +...|+.+|+..+.-   .++.-+.+||.|+.+.-.|+.++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~---~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG---QAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc---chhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHH
Confidence            34444444444444 567788999999999998444   488999999997775   34667999999999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176          106 SRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus       106 A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                      |++.++++|+++|.-.-+--+|.-|+
T Consensus       391 a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        391 ARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             HHHHHHHHhccCchhhHHHHHHHHHH
Confidence            99999999999999999988888883

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.79  E-value=0.012  Score=50.13  Aligned_cols=85  Identities=21%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ++++.+. ..++++.-+++--||.-+.... +.++.+..+++++..+   ......-+.-+|+++..+|+|++|.+.++.
T Consensus       151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~  226 (290)
T PF04733_consen  151 EKELKNMQQIDEDSILTQLAEAWVNLATGG-EKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEE  226 (290)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3444443 2233344444444444443332 3455555555554332   111224445555555555555555555555


Q ss_pred             HHhhCCCcHH
Q 031176          113 CLEIAPDWRQ  122 (164)
Q Consensus       113 lL~~eP~n~Q  122 (164)
                      +|+.+|.|+.
T Consensus       227 al~~~~~~~d  236 (290)
T PF04733_consen  227 ALEKDPNDPD  236 (290)
T ss_dssp             HCCC-CCHHH
T ss_pred             HHHhccCCHH
Confidence            5555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.78  E-value=0.044  Score=45.52  Aligned_cols=82  Identities=10%  Similarity=0.086  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---------------c---hHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG---------------E---YAKSR  107 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~---------------~---Y~~A~  107 (164)
                      ..++.+.+|++..   +.++...|+..++..++...+.+...+++|.++++++.++               |   -.+|.
T Consensus        68 a~~a~l~la~ayy---~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~  144 (243)
T PRK10866         68 SQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF  144 (243)
T ss_pred             HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence            4566799999999   6678999999999999976555677789999999987775               1   24677


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +.++.+++.-|+-+=+..-+..|
T Consensus       145 ~~~~~li~~yP~S~ya~~A~~rl  167 (243)
T PRK10866        145 RDFSKLVRGYPNSQYTTDATKRL  167 (243)
T ss_pred             HHHHHHHHHCcCChhHHHHHHHH
Confidence            99999999999977555554433

>PLN02789 farnesyltranstransferase

Probab=96.75  E-value=0.017  Score=49.98  Aligned_cols=85  Identities=11%  Similarity=0.053  Sum_probs=65.4

Q ss_pred             cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .++.+.++-..-.|.+-+-. .....+.+++++..+..  +| ..-.+|++.+....++++|++|+++++++|+.+|.|.
T Consensus       101 ~npknyqaW~~R~~~l~~l~-~~~~~~el~~~~kal~~--dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~  176 (320)
T PLN02789        101 DNPKNYQIWHHRRWLAEKLG-PDAANKELEFTRKILSL--DA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN  176 (320)
T ss_pred             HCCcchHHhHHHHHHHHHcC-chhhHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence            34556677777788876443 22346678899888885  34 5569999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 031176          122 QALGLKKTV  130 (164)
Q Consensus       122 Qa~~L~~~I  130 (164)
                      .|-.-+-.+
T Consensus       177 sAW~~R~~v  185 (320)
T PLN02789        177 SAWNQRYFV  185 (320)
T ss_pred             hHHHHHHHH
Confidence            765544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.71  E-value=0.0076  Score=58.34  Aligned_cols=78  Identities=23%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      -+...+..++.|-+|+   +.+...+|+.+|-.++..  ++.+.-..||-+|..|..+++|++|..+++.+|.++|+|-.
T Consensus       410 ~~d~~dL~~d~a~al~---~~~~~~~Al~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D  484 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALT---NIGKYKEALRLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD  484 (895)
T ss_pred             hhhhHHHHHHHHHHHH---hcccHHHHHHHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence            3456899999999999   999999999999998875  45556789999999999999999999999999999999986


Q ss_pred             HHH
Q 031176          123 ALG  125 (164)
Q Consensus       123 a~~  125 (164)
                      ++-
T Consensus       485 ~Ri  487 (895)
T KOG2076|consen  485 ARI  487 (895)
T ss_pred             hhh
Confidence            653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.66  E-value=0.0099  Score=50.74  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=66.9

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch-HHHHHHHHHHHhhCCCcHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY-AKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y-~~A~~~~~~lL~~eP~n~Q  122 (164)
                      .+++.+....|++.+   ..+++.+|.++|++.+..  +| ...|.+.++++...-+|+- +.+.+|+.++-+..|+++-
T Consensus       198 ~~t~~~lng~A~~~l---~~~~~~eAe~~L~~al~~--~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHL---QLGHYEEAEELLEEALEK--DP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             --SHHHHHHHHHHHH---HCT-HHHHHHHHHHHCCC---C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             CCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--cc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            457888889999999   888999999999998875  45 4569999999999999988 8899999999999999999


Q ss_pred             HHHHHHH
Q 031176          123 ALGLKKT  129 (164)
Q Consensus       123 a~~L~~~  129 (164)
                      ...+.+.
T Consensus       272 ~~~~~~~  278 (290)
T PF04733_consen  272 VKDLAEK  278 (290)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00540 hemY_coli hemY protein

Probab=96.64  E-value=0.029  Score=49.37  Aligned_cols=69  Identities=12%  Similarity=0.085  Sum_probs=53.9

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchH-HHHHHHHHHHHhhcchHHHHHHHH--HHHhhCCCcHHHHHHHHHHHh
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQR-EKLYLLAVGYYRTGEYAKSRQILE--QCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~r-d~lY~LAlg~~kl~~Y~~A~~~~~--~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      ++++....++.++..++.  +|.+.. ..+..|+..+++.|+|++|++|.+  ..++..|++..+..|-+..+.
T Consensus       311 ~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~  382 (409)
T TIGR00540       311 KPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ  382 (409)
T ss_pred             CCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            356677888888887875  343332 456688999999999999999999  799999999988877766664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.63  E-value=0.041  Score=46.85  Aligned_cols=84  Identities=15%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      .-++++.|=|.-++.   ..++.+.+...+....+...+.+.-.|.++=|++.-.++|+-++|+..++++.+.-|+.+.+
T Consensus       175 ~~~~nA~yWLGe~~y---~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         175 TYTPNAYYWLGESLY---AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             cccchhHHHHHHHHH---hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            336778888888877   77777888888877777654444555888888888888888888888888888888888877


Q ss_pred             HHHHHHH
Q 031176          124 LGLKKTV  130 (164)
Q Consensus       124 ~~L~~~I  130 (164)
                      +.=+..+
T Consensus       252 ~~Ak~~~  258 (262)
T COG1729         252 KLAKVAL  258 (262)
T ss_pred             HHHHHHH
Confidence            7655554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.61  E-value=0.013  Score=58.15  Aligned_cols=77  Identities=17%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      .+.++...+.+|..+.   ..++..+|++.++..+..  +| +..+.++.|+..+.+.|+|++|+.+++.+++..|++..
T Consensus       599 ~p~~~~~~~~La~~~~---~~g~~~~A~~~y~~al~~--~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~  672 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQ---QRGDYAAARAAYQRVLTR--EP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN  672 (1157)
T ss_pred             CCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence            3456778888898888   778899999999998885  45 44599999999999999999999999999999998876


Q ss_pred             HHH
Q 031176          123 ALG  125 (164)
Q Consensus       123 a~~  125 (164)
                      +..
T Consensus       673 ~~~  675 (1157)
T PRK11447        673 TQR  675 (1157)
T ss_pred             HHH
Confidence            544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.045  Score=50.59  Aligned_cols=85  Identities=16%  Similarity=0.260  Sum_probs=68.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      -.+-.+.-+....   ..+|...||..+.+.+..  +| +..-.+-+.|.+|.++++|.+|++.|+.+++++|++..+-.
T Consensus       357 ~A~e~r~kGne~F---k~gdy~~Av~~YteAIkr--~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~  430 (539)
T KOG0548|consen  357 KAEEEREKGNEAF---KKGDYPEAVKHYTEAIKR--DP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL  430 (539)
T ss_pred             HHHHHHHHHHHHH---hccCHHHHHHHHHHHHhc--CC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence            3555555566766   677899999999999987  34 55578889999999999999999999999999999988776


Q ss_pred             HHHHHHhHhhh
Q 031176          126 LKKTVEDRIAK  136 (164)
Q Consensus       126 L~~~Ie~~~~~  136 (164)
                      =|-.+...|++
T Consensus       431 RKg~al~~mk~  441 (539)
T KOG0548|consen  431 RKGAALRAMKE  441 (539)
T ss_pred             HHHHHHHHHHH
Confidence            66666555544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.46  E-value=0.064  Score=49.55  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=74.7

Q ss_pred             hhhhhhhhcccccCCCCCCC-----CCHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 031176            5 ISKFFDSIGSFFTGGDQIPW-----CDRDIIAGCEREVAEA--NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASL   77 (164)
Q Consensus         5 ~~~~~~~~~~~~~~~~~lp~-----~~~~~l~~~e~~y~~~--~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll   77 (164)
                      ...+.+.+..+|+..+...+     ++-++....=..|-+.  ..|-|   +.|.---.|...+  ....--.++++.++
T Consensus        96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~--~K~~~i~~l~~~~~  170 (517)
T PF12569_consen   96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP--EKAAIIESLVEEYV  170 (517)
T ss_pred             HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh--hHHHHHHHHHHHHH
Confidence            34567777778877655444     3334444444455554  55543   4455445555433  22333344444544


Q ss_pred             hCC---CC--------CCchH---HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           78 ANS---SP--------PLQQR---EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        78 ~~~---~~--------~~~~r---d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      ...   +.        ...+.   =++||||..|..+|+|++|++|++.++++.|.....--+|-.|-+
T Consensus       171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK  239 (517)
T PF12569_consen  171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK  239 (517)
T ss_pred             HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            321   00        01122   267999999999999999999999999999998876666665533

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.44  E-value=0.064  Score=49.14  Aligned_cols=97  Identities=20%  Similarity=0.201  Sum_probs=79.7

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..+.+. ..++.++-...+||-+|++-.+++   +||.+|...+..  +|. .-+-|+|||-+|-++|+-.+|....-..
T Consensus       361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~---eai~~L~~~~~~--~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQ---EAIRILNRYLFN--DPE-DPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHhcCChH---HHHHHHHHHhhc--CCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            334444 445556899999999999666665   999999998886  454 4499999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHhHhhhh
Q 031176          114 LEIAPDWRQALGLKKTVEDRIAKD  137 (164)
Q Consensus       114 L~~eP~n~Qa~~L~~~Ie~~~~~d  137 (164)
                      +...-..+||+.....-.++++.+
T Consensus       435 ~~~~G~~~~A~~~l~~A~~~~~~~  458 (484)
T COG4783         435 YALAGRLEQAIIFLMRASQQVKLG  458 (484)
T ss_pred             HHhCCCHHHHHHHHHHHHHhccCC
Confidence            999999999998888777776543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.43  E-value=0.0065  Score=35.47  Aligned_cols=29  Identities=38%  Similarity=0.579  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      .++..||..|...|+|++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            58899999999999999999999999875

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.42  E-value=0.011  Score=37.16  Aligned_cols=39  Identities=26%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      |.||-+|+++||++.|++.++.++. +++.+|-.+=++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~q~~eA~~LL   41 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE-EGDEAQRQEARALL   41 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            6799999999999999999999994 67776655544444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.39  E-value=0.034  Score=41.79  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             HHHHHHHH-h---cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           33 CEREVAEA-N---DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        33 ~e~~y~~~-~---~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ....|++. .   .+....++.++++.++-   +-+...+++.+|++.+....+++......+++|++.+.+|++++|+.
T Consensus        20 Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~   96 (120)
T PF12688_consen   20 AIPLYRRALAAGLSGADRRRALIQLASTLR---NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE   96 (120)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence            34456666 3   23445789999999999   88999999999999988633333355777999999999999999999


Q ss_pred             HHHHHHh
Q 031176          109 ILEQCLE  115 (164)
Q Consensus       109 ~~~~lL~  115 (164)
                      -+-.+|.
T Consensus        97 ~~l~~la  103 (120)
T PF12688_consen   97 WLLEALA  103 (120)
T ss_pred             HHHHHHH
Confidence            9877775

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.014  Score=57.07  Aligned_cols=75  Identities=20%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ..++..|+|+|++   ..+.+..||++.+..+++ -.+.++++.+-|||-+||+-+.|.+|.++...++...|.|.+.+
T Consensus       679 ~~dv~lNlah~~~---e~~qy~~AIqmYe~~lkk-f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~  753 (1018)
T KOG2002|consen  679 FEDVWLNLAHCYV---EQGQYRLAIQMYENCLKK-FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK  753 (1018)
T ss_pred             CCceeeeHHHHHH---HHHHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence            4578899999999   889999999999999997 34678899999999999999999999999999999999999754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.30  E-value=0.019  Score=48.27  Aligned_cols=66  Identities=14%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ...+.+++.+.   ..++..+|+..++..+..  .|. ...+++.+|..++..|++++|+.+++..+...|.
T Consensus       115 ~~~~~~a~~~~---~~G~~~~A~~~~~~al~~--~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         115 YLLGMLAFGLE---EAGQYDRAEEAARRALEL--NPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            33444445554   344455566666555553  222 2345555555666666666666666666655553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR00540 hemY_coli hemY protein

Probab=96.28  E-value=0.027  Score=49.57  Aligned_cols=84  Identities=12%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCch--HHHHHHHHHHHhcCChhHHHHHHHHHH--HHhhCCCCCCchHHHHHHHHHHHHh
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKS--ESIMRLSWALVHSRQAEDVQRGIAMLE--ASLANSSPPLQQREKLYLLAVGYYR   99 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~--~~~F~yA~aLi~S~~~~d~~~gi~lLe--~ll~~~~~~~~~rd~lY~LAlg~~k   99 (164)
                      .++++.....+..++. ...+.++  .....|+|.++   +.++..+|.+.|+  ..+..   .++..++. .||..+.+
T Consensus       310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~---~~~~~~~A~~~le~a~a~~~---~p~~~~~~-~La~ll~~  382 (409)
T TIGR00540       310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM---KHGEFIEAADAFKNVAACKE---QLDANDLA-MAADAFDQ  382 (409)
T ss_pred             cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH---HcccHHHHHHHHHHhHHhhc---CCCHHHHH-HHHHHHHH
Confidence            3344444455555554 4455566  77889999999   6777889999999  45554   33555555 99999999


Q ss_pred             hcchHHHHHHHHHHHh
Q 031176          100 TGEYAKSRQILEQCLE  115 (164)
Q Consensus       100 l~~Y~~A~~~~~~lL~  115 (164)
                      +|+.++|.+++++.|.
T Consensus       383 ~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       383 AGDKAEAAAMRQDSLG  398 (409)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999999998755

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.047  Score=46.77  Aligned_cols=84  Identities=20%  Similarity=0.191  Sum_probs=59.6

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      +.+-|.+.-++.|+..+..--=.+.+++.-+  ..++|+-|.++++.   -+...|+|-+||-.|...++|++|--|.+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGK--NLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCC--cHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            4555666655556655544444444444222  22566666666664   345579999999999999999999999999


Q ss_pred             HHhhCCCcH
Q 031176          113 CLEIAPDWR  121 (164)
Q Consensus       113 lL~~eP~n~  121 (164)
                      ++=+.|-|+
T Consensus       180 ~ll~~P~n~  188 (289)
T KOG3060|consen  180 LLLIQPFNP  188 (289)
T ss_pred             HHHcCCCcH
Confidence            999999998

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.22  E-value=0.031  Score=53.61  Aligned_cols=77  Identities=16%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .-++....+.--+|-+|....++..- ....+|.+.++-  || ..++.||||+-.+-++|+.+.|-.|.+.++++||.|
T Consensus       712 ~ldP~hv~s~~Ala~~lle~G~~~la-~~~~~L~dalr~--dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  712 ALDPDHVPSMTALAELLLELGSPRLA-EKRSLLSDALRL--DP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCcchH-HHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            44666788888999999976644332 233377787885  44 667999999999999999999999999999999998


Q ss_pred             H
Q 031176          121 R  121 (164)
Q Consensus       121 ~  121 (164)
                      +
T Consensus       788 P  788 (799)
T KOG4162|consen  788 P  788 (799)
T ss_pred             C
Confidence            6

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.21  E-value=0.031  Score=50.07  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      .+.+..-.+|--|+   +.++.+.|+++....+..  .| ..-++||+||.+|.++|+|++|+-.++.+
T Consensus       232 ~d~~LL~~Qa~fLl---~k~~~~lAL~iAk~av~l--sP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  232 QDSELLNLQAEFLL---SKKKYELALEIAKKAVEL--SP-SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            34555555666666   455556677777666664  34 44488888888888888888888776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.041  Score=49.33  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      --|+-+||.+|.|+++|..|+++|+.+|.++|+|..|.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            46888999999999999999999999999999997543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.19  E-value=0.014  Score=35.13  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhhcchHHHHHH--HHHHHhhCCCc
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQI--LEQCLEIAPDW  120 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~--~~~lL~~eP~n  120 (164)
                      |++|-+|..++..|+|++|+++  ..-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            7899999999999999999999  44888888876

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.18  E-value=0.048  Score=53.49  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +...+||.||.+|-++|++++|...++++|+.+|+|..+..
T Consensus       114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN  154 (906)
T PRK14720        114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK  154 (906)
T ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence            34579999999999999999999999999999999998764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.14  E-value=0.084  Score=41.13  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc---------------hHHHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE---------------YAKSR  107 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~---------------Y~~A~  107 (164)
                      ++-+.+++..++++..   ..++...|+.-++..++-+-..+...-.+|..+++++++.+               ..+|+
T Consensus        43 g~ya~qAqL~l~yayy---~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~  119 (142)
T PF13512_consen   43 GEYAEQAQLDLAYAYY---KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF  119 (142)
T ss_pred             CcccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH
Confidence            4458899999999999   66788889999988888643334566788999999999998               99999


Q ss_pred             HHHHHHHhhCCCcHHHHH
Q 031176          108 QILEQCLEIAPDWRQALG  125 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~  125 (164)
                      ...+++++.-|+.+=+..
T Consensus       120 ~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen  120 RDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHHHHHHCcCChhHHH
Confidence            999999999999876654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.13  E-value=0.011  Score=38.77  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176           93 LAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus        93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |+..|.+.++|++|+++++++++++|++......+-.+.-...+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~   44 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR   44 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc
Confidence            45678999999999999999999999999988877777655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.12  E-value=0.041  Score=52.42  Aligned_cols=71  Identities=14%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +++..|++-.--   ....++.|+.+.+..++-   .++.-..+.+||+.|-.+|++++|+.+++.+|++.|..-++
T Consensus       354 adam~NLgni~~---E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda  424 (966)
T KOG4626|consen  354 ADAMNNLGNIYR---EQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA  424 (966)
T ss_pred             HHHHHHHHHHHH---HhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence            344444444333   334444444444444442   22344444455555555555555555555555555544443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.09  E-value=0.12  Score=50.37  Aligned_cols=108  Identities=9%  Similarity=0.021  Sum_probs=85.3

Q ss_pred             cccCCCCCCCCCHHHHHHH--------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176           15 FFTGGDQIPWCDRDIIAGC--------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN   79 (164)
Q Consensus        15 ~~~~~~~lp~~~~~~l~~~--------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~   79 (164)
                      .|++....|++|.++...+              |+.+++. ...+-+......+|-...   ..+.-++|.++++.....
T Consensus       403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~---~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL---ARDLPRKAEQELKAVESL  479 (822)
T ss_pred             ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhh
Confidence            5777788999998887655              4444444 334446777777777777   677788888888775553


Q ss_pred             CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176           80 SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus        80 ~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                        +| +..+..+-++.++-.++++.+|....+.+++..|++...+.|+.
T Consensus       480 --~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r  525 (822)
T PRK14574        480 --AP-RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR  525 (822)
T ss_pred             --CC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence              34 55689999999999999999999999999999999999999886

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.05  E-value=0.038  Score=50.36  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=37.6

Q ss_pred             CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ++.-+.+++|+++|+++|+|++|+.+++++|+++|++.+++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~  112 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQ  112 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Confidence            45569999999999999999999999999999999998763

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.01  E-value=0.028  Score=42.28  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL  114 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL  114 (164)
                      +.+.+++|+.++   ..++..+|+..|+. +..   +.-....+..++-.|.+.|++++|+..++.+|
T Consensus        85 ~~a~l~LA~~~~---~~~~~d~Al~~L~~-~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   85 PLARLRLARILL---QQGQYDEALATLQQ-IPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHh-ccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            568899999999   77788899999977 332   33455788999999999999999999998865

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.06  Score=45.88  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH-HHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA-LGL  126 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa-~~L  126 (164)
                      +..|+-|+.+++|.+   +..|..-|.+.+.+--+..-.-+++|+|+-.+|.+|+|+.|-.....+.+--|+++.+ -.|
T Consensus       142 ~~~Y~~A~~~~ksgd---y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDLYKSGD---YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            347999999997765   8889999989888632233456999999999999999999999999999999999877 444


Q ss_pred             HH
Q 031176          127 KK  128 (164)
Q Consensus       127 ~~  128 (164)
                      .+
T Consensus       219 lK  220 (262)
T COG1729         219 LK  220 (262)
T ss_pred             HH
Confidence            33

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.80  E-value=0.051  Score=45.82  Aligned_cols=73  Identities=19%  Similarity=0.259  Sum_probs=64.1

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +..+++..+|...+   +.+|...|..-||+.|..  || +.-+.|--+|..|-++|+-+.|.+.++++|+++|+|-.+
T Consensus        33 ~aa~arlqLal~YL---~~gd~~~A~~nlekAL~~--DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV  105 (250)
T COG3063          33 EAAKARLQLALGYL---QQGDYAQAKKNLEKALEH--DP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV  105 (250)
T ss_pred             HHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence            35688899999999   889999999999999995  45 445888889999999999999999999999999998644

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.79  E-value=0.12  Score=43.30  Aligned_cols=79  Identities=20%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +.-.-..+.+|+.+..-.++.+-.++..........   ....+++.+..|+.++..|++++|..+++++|+..|+|..+
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a   79 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA---RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA   79 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence            445667777787777555555544444444443332   23568999999999999999999999999999999999866


Q ss_pred             HH
Q 031176          124 LG  125 (164)
Q Consensus       124 ~~  125 (164)
                      ..
T Consensus        80 ~~   81 (355)
T cd05804          80 LK   81 (355)
T ss_pred             HH
Confidence            54

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.75  E-value=0.094  Score=50.99  Aligned_cols=62  Identities=13%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      +.++..+|+++++.++..  +|.+ .+.++.|++.+...+++++|++.++++++.+|++..++.+
T Consensus       114 ~~gdyd~Aiely~kaL~~--dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l  175 (822)
T PRK14574        114 NEKRWDQALALWQSSLKK--DPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL  175 (822)
T ss_pred             HcCCHHHHHHHHHHHHhh--CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence            455666788888777775  4544 5777777777788888888888888888888877766444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.70  E-value=0.05  Score=50.71  Aligned_cols=95  Identities=19%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC------------------
Q 031176           25 CDRDIIAGCEREVAEA-NDD--KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP------------------   83 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~--~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~------------------   83 (164)
                      +++..+.+..+.|.+. ...  +.+++.+--+....-   -.++..++|..|+..|..  .|                  
T Consensus       405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~---ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~  479 (579)
T KOG1125|consen  405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN---LSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNR  479 (579)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh---cchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcc
Confidence            7889999999999998 222  245555555544433   456888999999888874  34                  


Q ss_pred             ---------------CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           84 ---------------LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        84 ---------------~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                                     +......|+|||.|.++|.|.+|.++.=.+|.+.+.++..+
T Consensus       480 s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~  535 (579)
T KOG1125|consen  480 SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN  535 (579)
T ss_pred             cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence                           45556779999999999999999999999999999844433

>PRK15331 chaperone protein SicA; Provisional

Probab=95.70  E-value=0.054  Score=43.20  Aligned_cols=30  Identities=20%  Similarity=0.143  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           90 LYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        90 lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .||.|..|..+|+.++|+++.+.++. .|++
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            56666666666666666666666666 3443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.69  E-value=0.037  Score=51.51  Aligned_cols=72  Identities=21%  Similarity=0.306  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ..--|.-++-|+   +.+++.+++-.||..+.+  +| ..-|+|-+|++.|+..++=..|..+..++|+++|+|.+|.
T Consensus       285 ~pdPf~eG~~lm---~nG~L~~A~LafEAAVkq--dP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaL  356 (579)
T KOG1125|consen  285 HPDPFKEGCNLM---KNGDLSEAALAFEAAVKQ--DP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEAL  356 (579)
T ss_pred             CCChHHHHHHHH---hcCCchHHHHHHHHHHhh--Ch-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHH
Confidence            344588899999   777799999999999996  45 5559999999999999999999999999999999999764

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.68  E-value=0.19  Score=47.73  Aligned_cols=100  Identities=16%  Similarity=0.187  Sum_probs=68.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      +..++.--.+..|-   .-++-++|-+...--++.   +...+-||--+++.+-..++|++|.+|+..+|.++|+|.|-.
T Consensus        39 eHgeslAmkGL~L~---~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil  112 (700)
T KOG1156|consen   39 EHGESLAMKGLTLN---CLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL  112 (700)
T ss_pred             ccchhHHhccchhh---cccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            34455544555554   344555666666555553   356679999999999999999999999999999999999865


Q ss_pred             HHHHHHHhHh-------------------hhhhHHHHHHHHHHHH
Q 031176          125 GLKKTVEDRI-------------------AKDGVIGIGITATAVG  150 (164)
Q Consensus       125 ~L~~~Ie~~~-------------------~~dGliG~~i~~~a~~  150 (164)
                      .=..+++-.|                   .+.-++|.+++.-..|
T Consensus       113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g  157 (700)
T KOG1156|consen  113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG  157 (700)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            4333333332                   2366777777654433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.66  E-value=0.45  Score=38.99  Aligned_cols=75  Identities=15%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQ----AEDVQRGIAMLEASLANSSP---PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~----~~d~~~gi~lLe~ll~~~~~---~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      .......||..=-..+    ..-.++|.+.+++.+.....   +.+.--.+|++|.-++|+|+|++|++++.+++...-.
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            6677788997653333    23466889999998876332   2334567899999999999999999999999987544


Q ss_pred             cH
Q 031176          120 WR  121 (164)
Q Consensus       120 n~  121 (164)
                      +.
T Consensus       198 s~  199 (214)
T PF09986_consen  198 SK  199 (214)
T ss_pred             CC
Confidence            44

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.059  Score=46.46  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++.++-+.-|+.-+..  +| +.-+-|+.|+-.|.++++++.|...+..++++.|+|.+.....-.+
T Consensus       135 ~~~~~~l~a~Le~~L~~--nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea  199 (287)
T COG4235         135 EQEMEALIARLETHLQQ--NP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA  199 (287)
T ss_pred             cccHHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45578888999998886  44 5569999999999999999999999999999999999887665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.60  E-value=0.022  Score=37.93  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      .-.+++++|..|.++|+|++|+.+++++|++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999965

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.57  E-value=0.094  Score=47.03  Aligned_cols=73  Identities=21%  Similarity=0.327  Sum_probs=60.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH----HHHHHHHH
Q 031176           54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR----QALGLKKT  129 (164)
Q Consensus        54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~----Qa~~L~~~  129 (164)
                      |-|+|   ..++.++||.-|...-+-   ..+..|.+|-++--+|..|+-+.++.-+..+|+++|++.    -++.|++.
T Consensus       196 akc~i---~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  196 AKCYI---AEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             HHHHH---hcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence            67777   677888899888886664   345579999999999999999999999999999999975    56666665


Q ss_pred             HHh
Q 031176          130 VED  132 (164)
Q Consensus       130 Ie~  132 (164)
                      +..
T Consensus       270 ~K~  272 (504)
T KOG0624|consen  270 VKS  272 (504)
T ss_pred             HHH
Confidence            543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.45  E-value=0.013  Score=34.36  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             CchHHHHHHHHHHHHhhcchHHHHH
Q 031176           84 LQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        84 ~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ++..+.||+||..|++.|++++|++
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3556999999999999999999973

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.21  Score=45.64  Aligned_cols=112  Identities=13%  Similarity=0.017  Sum_probs=80.7

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176           15 FFTGGDQIPWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL   93 (164)
Q Consensus        15 ~~~~~~~lp~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L   93 (164)
                      .|+++-++|.+.  .-+++.+-|+.. ...+.=..+-.-.|..+.   ..+-+..||.+||..+.. . |  ....+-.|
T Consensus       407 L~g~~V~~~dp~--~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~---~Eg~~~D~i~LLe~~L~~-~-~--D~~LH~~L  477 (564)
T KOG1174|consen  407 LFGTLVLFPDPR--MREKAKKFAEKSLKINPIYTPAVNLIAELCQ---VEGPTKDIIKLLEKHLII-F-P--DVNLHNHL  477 (564)
T ss_pred             hhcceeeccCch--hHHHHHHHHHhhhccCCccHHHHHHHHHHHH---hhCccchHHHHHHHHHhh-c-c--ccHHHHHH
Confidence            455555555444  666777777776 333333455555555555   466778899999998885 1 1  22456778


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           94 AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        94 Alg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      +-...-..+|.+|..++..+|+++|+|+.++.=.+.+|+.+.
T Consensus       478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            888889999999999999999999999998887777877654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.37  E-value=0.3  Score=42.92  Aligned_cols=68  Identities=21%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           61 RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        61 ~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ...++..++.+.|++..+.  +|...--.....+-.+...|+|+.|+.+++.+++.+|+|+.+..+...+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3677788899999887774  2322212222347788899999999999999999999998766555433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.24  E-value=0.076  Score=45.14  Aligned_cols=67  Identities=18%  Similarity=0.296  Sum_probs=57.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           53 LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        53 yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      |+-.++   ..++..+++..|......  +| ..-+.|.-|+++|-++|+++.|+..+.++|++.|+++.+..
T Consensus       106 ~gk~~~---~~g~~~~A~~~~rkA~~l--~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n  172 (257)
T COG5010         106 QGKNQI---RNGNFGEAVSVLRKAARL--AP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN  172 (257)
T ss_pred             HHHHHH---HhcchHHHHHHHHHHhcc--CC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence            777777   778889999999998885  45 44599999999999999999999999999999999987654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.17  E-value=0.09  Score=45.64  Aligned_cols=59  Identities=22%  Similarity=0.342  Sum_probs=47.7

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ..+++++||..-.+.+.-  +|.+. -|+-+-|-+|.+||+|+.|.+-|+.+|+++|.-..+
T Consensus        93 ~~~~Y~eAv~kY~~AI~l--~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska  151 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIEL--DPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA  151 (304)
T ss_pred             HhhhHHHHHHHHHHHHhc--CCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence            456788899999888885  45333 566678999999999999999999999999986543

>PRK15331 chaperone protein SicA; Provisional

Probab=95.16  E-value=0.44  Score=38.04  Aligned_cols=70  Identities=4%  Similarity=-0.003  Sum_probs=60.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .-+..+.+|+.+-   +.+++.+|..++.-|+--  ++ ..++||+-||..+=.+++|++|..++-.+.-++|+|+
T Consensus        36 ~le~iY~~Ay~~y---~~Gk~~eA~~~F~~L~~~--d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         36 MMDGLYAHAYEFY---NQGRLDEAETFFRFLCIY--DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            3466788999999   788889999999887774  45 4468999999999999999999999999999998887

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.07  E-value=0.13  Score=49.22  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      +-|.+. .-++.=++++-|+|-+|-   +.+++.+|+......++-  .| +.-|.+|+|+.+|-.++.+++|.+.+..+
T Consensus       307 ~~Ykral~~~P~F~~Ay~NlanALk---d~G~V~ea~~cYnkaL~l--~p-~hadam~NLgni~~E~~~~e~A~~ly~~a  380 (966)
T KOG4626|consen  307 DTYKRALELQPNFPDAYNNLANALK---DKGSVTEAVDCYNKALRL--CP-NHADAMNNLGNIYREQGKIEEATRLYLKA  380 (966)
T ss_pred             HHHHHHHhcCCCchHHHhHHHHHHH---hccchHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            456665 445556889999999998   889999999999998885  24 45599999999999999999999999999


Q ss_pred             HhhCCCcHHH
Q 031176          114 LEIAPDWRQA  123 (164)
Q Consensus       114 L~~eP~n~Qa  123 (164)
                      |++.|+...+
T Consensus       381 l~v~p~~aaa  390 (966)
T KOG4626|consen  381 LEVFPEFAAA  390 (966)
T ss_pred             HhhChhhhhh
Confidence            9999987643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.99  E-value=0.097  Score=33.66  Aligned_cols=60  Identities=18%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA   94 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA   94 (164)
                      +...+.+.|.+. ...+.+.++.+.+|.+++   ..++..+|.++|+.++..  +|. ..+++..+|
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~~~~~--~~~-~~~~~~l~a   66 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYL---KQGQYDEAEELLERLLKQ--DPD-NPEYQQLLA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH---HTT-HHHHHHHHHCCHGG--GTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CcC-HHHHHHHHh
Confidence            344556666666 556669999999999999   667888999999998885  343 345555554

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.41  Score=44.24  Aligned_cols=127  Identities=10%  Similarity=0.106  Sum_probs=90.9

Q ss_pred             hhhhhhhcc------cccCCCCCCCCCHHHHHHHHHHHHHH--------------hcCCCchHHHHHHHHHHHhcCChhH
Q 031176            6 SKFFDSIGS------FFTGGDQIPWCDRDIIAGCEREVAEA--------------NDDKQKSESIMRLSWALVHSRQAED   65 (164)
Q Consensus         6 ~~~~~~~~~------~~~~~~~lp~~~~~~l~~~e~~y~~~--------------~~~~~s~~~~F~yA~aLi~S~~~~d   65 (164)
                      |+.-+.|+=      ||+++..+.-.|+-+...+.+-|+..              .-+.....+...+|-..=   +-++
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye---~l~d  481 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE---ELKD  481 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH---HHHh
Confidence            444555543      67777666666777777776666554              111223344555554443   5678


Q ss_pred             HHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           66 VQRGIAMLEASLANS----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        66 ~~~gi~lLe~ll~~~----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .++|...++..+...    .-.+..+.+.-+||.-+.|.++|++|-.|+..++.-+|..+.++.|.+.|.+.+.
T Consensus       482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA  555 (559)
T ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            888988888877631    1234566777789999999999999999999999999999999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.89  E-value=0.22  Score=49.10  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +|.+.-.+|--..   -.+|+.+..++-+-.+..+....-..+.+|++|-+|..+|||++|..|+.+.++.+|+|
T Consensus       269 nP~~l~~LAn~fy---fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~  340 (1018)
T KOG2002|consen  269 NPVALNHLANHFY---FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN  340 (1018)
T ss_pred             CcHHHHHHHHHHh---hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence            4455555555555   45566666666655555433334556778888888888888888888888888888887

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.83  E-value=0.44  Score=43.96  Aligned_cols=92  Identities=9%  Similarity=0.036  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176           28 DIIAGCEREVAEA-N--DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        28 ~~l~~~e~~y~~~-~--~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      +.+.++.+...+. .  .+...+.+  ..|.++++. ..++..+|+..|+..+.-  +| . -+.+++++..+...|+++
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~--~~ala~~~~-~~g~~~~A~~~l~rAl~L--~p-s-~~a~~~lG~~~~~~G~~~  470 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRI--YEILAVQAL-VKGKTDEAYQAINKAIDL--EM-S-WLNYVLLGKVYELKGDNR  470 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHH--HHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC-C-HHHHHHHHHHHHHcCCHH
Confidence            4566666666554 2  23334444  444455543 357899999999999986  34 3 578999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHH
Q 031176          105 KSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      +|..+++++++++|.++..---
T Consensus       471 eA~~~~~~A~~L~P~~pt~~~~  492 (517)
T PRK10153        471 LAADAYSTAFNLRPGENTLYWI  492 (517)
T ss_pred             HHHHHHHHHHhcCCCCchHHHH
Confidence            9999999999999998865433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.48  Score=44.03  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=68.2

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.++..+=|-|.|++   .-.+..+|+.-.+..++.  +|...+-|+ .=+.+++-+++|++|.+.++..|+++|+|
T Consensus       386 kr~P~Da~lYsNRAac~~---kL~~~~~aL~Da~~~ieL--~p~~~kgy~-RKg~al~~mk~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  386 KRDPEDARLYSNRAACYL---KLGEYPEALKDAKKCIEL--DPNFIKAYL-RKGAALRAMKEYDKALEAYQEALELDPSN  459 (539)
T ss_pred             hcCCchhHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            445667888889999999   788899999999888885  565554444 44999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 031176          121 RQALGLKKTV  130 (164)
Q Consensus       121 ~Qa~~L~~~I  130 (164)
                      ..+..--...
T Consensus       460 ~e~~~~~~rc  469 (539)
T KOG0548|consen  460 AEAIDGYRRC  469 (539)
T ss_pred             HHHHHHHHHH
Confidence            9877644433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.50  E-value=0.5  Score=39.73  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             HHHHHHHHHH-hc-----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176           31 AGCEREVAEA-ND-----DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        31 ~~~e~~y~~~-~~-----~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      ..+...|.+. ..     .+...-..-|-|-|+|   ..+..+.+|+-....+.-  .|. -.-++---|-+|-++..|+
T Consensus       112 eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i---Kl~k~e~aI~dcsKaiel--~pt-y~kAl~RRAeayek~ek~e  185 (271)
T KOG4234|consen  112 EEANSKYQEALESCPSTSTEERSILYSNRAAALI---KLRKWESAIEDCSKAIEL--NPT-YEKALERRAEAYEKMEKYE  185 (271)
T ss_pred             HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH---HhhhHHHHHHHHHhhHhc--Cch-hHHHHHHHHHHHHhhhhHH
Confidence            3455667766 11     1222334445577777   555666677766666664  242 2345556689999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176          105 KSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +|+.=+..+|+++|.++|++.=-..+..
T Consensus       186 ealeDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  186 EALEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            9999999999999999998765444433

>PLN02789 farnesyltranstransferase

Probab=94.36  E-value=0.42  Score=41.42  Aligned_cols=64  Identities=11%  Similarity=0.048  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch--HHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY--AKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y--~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      .+++++.++.++..  +| ..-..|++.+....+++++  ++++.+++.+|+.+|.|-.|=.=+.-+-.
T Consensus        88 l~eeL~~~~~~i~~--np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789         88 LEEELDFAEDVAED--NP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHHHHHHHHHHHHH--CC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44455555554443  12 2224455555444444442  44455555555555555554444443333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.34  E-value=0.57  Score=34.74  Aligned_cols=83  Identities=23%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 031176           15 FFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA   94 (164)
Q Consensus        15 ~~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA   94 (164)
                      |+.+.+.-||..+ .-..+++.|.         ++.-.++-.+.   ..++..+++.+++.++..  +| ..-+.+..|-
T Consensus        40 ~l~~~~~~~W~~~-~r~~l~~~~~---------~~~~~l~~~~~---~~~~~~~a~~~~~~~l~~--dP-~~E~~~~~lm  103 (146)
T PF03704_consen   40 FLPDLDDEEWVEP-ERERLRELYL---------DALERLAEALL---EAGDYEEALRLLQRALAL--DP-YDEEAYRLLM  103 (146)
T ss_dssp             TTGGGTTSTTHHH-HHHHHHHHHH---------HHHHHHHHHHH---HTT-HHHHHHHHHHHHHH--ST-T-HHHHHHHH
T ss_pred             CCCCCCccHHHHH-HHHHHHHHHH---------HHHHHHHHHHH---hccCHHHHHHHHHHHHhc--CC-CCHHHHHHHH
Confidence            5555455566543 2233444443         34444555566   677888999999999986  45 4557888999


Q ss_pred             HHHHhhcchHHHHHHHHHH
Q 031176           95 VGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        95 lg~~kl~~Y~~A~~~~~~l  113 (164)
                      .+|++.|++..|++.++++
T Consensus       104 ~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen  104 RALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHH
Confidence            9999999999999987665

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.24  E-value=0.17  Score=45.20  Aligned_cols=88  Identities=14%  Similarity=0.185  Sum_probs=71.1

Q ss_pred             HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176           36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL  114 (164)
Q Consensus        36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL  114 (164)
                      =|.+. +.|-.+++..-|.+.|-+   ..+.+.-...-++..+..-..|...-|.||+|+...--.||+.-|.+|.+.+|
T Consensus       346 yYRRiLqmG~~speLf~NigLCC~---yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  346 YYRRILQMGAQSPELFCNIGLCCL---YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             HHHHHHHhcCCChHHHhhHHHHHH---hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence            46666 778889999999998888   56666666666665555434577888999999999999999999999999999


Q ss_pred             hhCCCcHHHHHH
Q 031176          115 EIAPDWRQALGL  126 (164)
Q Consensus       115 ~~eP~n~Qa~~L  126 (164)
                      ..+|+|..+..=
T Consensus       423 ~~d~~h~ealnN  434 (478)
T KOG1129|consen  423 TSDAQHGEALNN  434 (478)
T ss_pred             ccCcchHHHHHh
Confidence            999999876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.12  E-value=0.41  Score=44.30  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      .+..+-.+-.+.   ..++.++|++.|++.-..   -.++.-.+=..|-.+.++|++++|...+..+|+.+|+|..+-..
T Consensus         4 SE~lLY~~~il~---e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~   77 (517)
T PF12569_consen    4 SELLLYKNSILE---EAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRG   77 (517)
T ss_pred             HHHHHHHHHHHH---HCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            344555566666   668999999999885543   34566777788999999999999999999999999999976554


Q ss_pred             HHHH
Q 031176          127 KKTV  130 (164)
Q Consensus       127 ~~~I  130 (164)
                      ....
T Consensus        78 L~~~   81 (517)
T PF12569_consen   78 LEEA   81 (517)
T ss_pred             HHHH
Confidence            4433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=94.05  E-value=0.14  Score=47.39  Aligned_cols=63  Identities=24%  Similarity=0.325  Sum_probs=47.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176           52 RLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e  117 (164)
                      .+|..+.   +.+...+|+.++++.+...     .+.+..--.|..||+.|++.|+|++|..||++++++-
T Consensus       246 ~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  246 ILALVYR---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            4777777   5666777777776655421     2334556778999999999999999999999999874

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.97  E-value=1.2  Score=41.90  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH-
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG-  125 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~-  125 (164)
                      ..+.-|++++..   +.+...+||.-++..+..   .+..-+.+--+|..|..+|+.+.|..+...+|-+.|+|.-..+ 
T Consensus       455 ~p~~~NLGH~~R---kl~~~~eAI~~~q~aL~l---~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l  528 (611)
T KOG1173|consen  455 EPTLNNLGHAYR---KLNKYEEAIDYYQKALLL---SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL  528 (611)
T ss_pred             hHHHHhHHHHHH---HHhhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence            355677888887   777889999999998875   3355688889999999999999999999999999999966555 


Q ss_pred             HHHHHHhHhhhh
Q 031176          126 LKKTVEDRIAKD  137 (164)
Q Consensus       126 L~~~Ie~~~~~d  137 (164)
                      |+..||+-..+.
T Consensus       529 L~~aie~~~~~~  540 (611)
T KOG1173|consen  529 LKLAIEDSECKS  540 (611)
T ss_pred             HHHHHHhhhhhc
Confidence            556677644443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.88  E-value=0.21  Score=35.59  Aligned_cols=54  Identities=30%  Similarity=0.394  Sum_probs=39.9

Q ss_pred             HHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc--HHHHH
Q 031176           69 GIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW--RQALG  125 (164)
Q Consensus        69 gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n--~Qa~~  125 (164)
                      .++-|+.-+..  +| ...+..|.||..+...|+|+.|+.-+-.+++.+|++  .+++.
T Consensus         7 ~~~al~~~~a~--~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~   62 (90)
T PF14561_consen    7 DIAALEAALAA--NP-DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK   62 (90)
T ss_dssp             HHHHHHHHHHH--ST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH
T ss_pred             cHHHHHHHHHc--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH
Confidence            34556666664  34 455999999999999999999999999999999987  44443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=0.1  Score=46.12  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=55.2

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH----HhhCCC
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC----LEIAPD  119 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l----L~~eP~  119 (164)
                      +...++..+.++.+.   +.+..+.++.-+...+.-+  ..+ .=.-|++|++||+.|+|..|++++-.+    .+-.|+
T Consensus       141 en~Ad~~in~gClly---kegqyEaAvqkFqaAlqvs--Gyq-pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  141 ENEADGQINLGCLLY---KEGQYEAAVQKFQAALQVS--GYQ-PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             CCccchhccchheee---ccccHHHHHHHHHHHHhhc--CCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            456788999999998   7888999999999988752  222 256699999999999999999986544    455554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.40  E-value=0.93  Score=40.78  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC----------------------------CchHHHHHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP----------------------------LQQREKLYLLAVGY   97 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~----------------------------~~~rd~lY~LAlg~   97 (164)
                      ++.....||--|+   +-++-..|.+++++.++...||                            ++.-+.++.|+.-|
T Consensus       262 ~p~l~~~~a~~li---~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         262 DPELVVAYAERLI---RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             ChhHHHHHHHHHH---HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            3566667777777   5566666777777666654222                            22238889999999


Q ss_pred             HhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           98 YRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        98 ~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +|.+.|.+|..+.+.+|+..|+..-...|-...+.
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~  373 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPSASDYAELADALDQ  373 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence            99999999999999999999999988887776654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.40  E-value=0.37  Score=37.31  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .|.+.-.|-.++..|||.-|.+.++.++..+|+|.+++.|+...-+++.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            5888899999999999999999999999999999999999987665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.26  E-value=1.7  Score=32.14  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+++--++-.+...|+|++|.+.+++++..+|-|+++-..
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~  101 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRL  101 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            35777888889999999999999999999999999876553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.21  E-value=0.21  Score=30.29  Aligned_cols=43  Identities=21%  Similarity=0.205  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV   95 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl   95 (164)
                      +++.+.+|..+.   ..++..+|+.+++..+..  +| +..+.++.||.
T Consensus         1 p~~~~~la~~~~---~~G~~~~A~~~~~~~l~~--~P-~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR---RLGQPDEAERLLRRALAL--DP-DDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--Cc-CCHHHHHHhhh
Confidence            467889999999   677888999999999996  45 44588888874

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=0.35  Score=42.82  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .-...+|++|..-.+.   .+..|-.+-.|+-.||...+|.+|-.|++++=++.|.-.|++
T Consensus        24 ~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr   81 (459)
T KOG4340|consen   24 ARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR   81 (459)
T ss_pred             hhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence            3455566666665553   334566777777777777777777777777777777766554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.91  E-value=0.92  Score=43.05  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      .-++-.+|.-|-.|.   .-..+.++...||+|-.-  .| +---.+|.|+..|-++|+++.|+.-.--++.++|.-.| 
T Consensus       554 ~kn~l~~~~~~~il~---~~~~~~eal~~LEeLk~~--vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~-  626 (638)
T KOG1126|consen  554 PKNPLCKYHRASILF---SLGRYVEALQELEELKEL--VP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ-  626 (638)
T ss_pred             CCCchhHHHHHHHHH---hhcchHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch-
Confidence            335555555555555   334455555555554332  23 22345556666666666666666666666666665555 


Q ss_pred             HHHHHHHH
Q 031176          124 LGLKKTVE  131 (164)
Q Consensus       124 ~~L~~~Ie  131 (164)
                      ..-+..++
T Consensus       627 i~~k~~~~  634 (638)
T KOG1126|consen  627 IQIKAAIE  634 (638)
T ss_pred             hhHHHHhh
Confidence            44444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.71  E-value=1.1  Score=37.48  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC-CC---CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC---
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS-PP---LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD---  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~-~~---~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~---  119 (164)
                      .+...+.|-.++   ..+++.+|++++++.....- .+   ..-++++....+.|.-.||+..|.+.++...+.+|.   
T Consensus       155 ~~~~~~~A~l~~---~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  155 AECLLKAADLYA---RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            566667787777   55699999999999887421 11   234577777888999999999999999999999994   


Q ss_pred             cHHHHHHHHHHHhH
Q 031176          120 WRQALGLKKTVEDR  133 (164)
Q Consensus       120 n~Qa~~L~~~Ie~~  133 (164)
                      -++++-|..+|+.-
T Consensus       232 s~E~~~~~~l~~A~  245 (282)
T PF14938_consen  232 SREYKFLEDLLEAY  245 (282)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            56777777777654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.56  E-value=0.18  Score=42.93  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=58.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           53 LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        53 yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ||+.+.   ++.|..-+.+++.+.+.-   .++--+-|+-++--+-|-|+++.|-+.+++.|+++|++.+..+||-.+
T Consensus         1 ~a~~~~---~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~   72 (287)
T COG4976           1 YAYMLA---ESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV   72 (287)
T ss_pred             Ccchhc---ccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence            455666   566777888888888874   345567788888888888889999999999999999999999998665

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.54  E-value=0.97  Score=40.40  Aligned_cols=83  Identities=17%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh---------cchHHHHHHHHHHHhh
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT---------GEYAKSRQILEQCLEI  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl---------~~Y~~A~~~~~~lL~~  116 (164)
                      ++..+|.||.+|.|-+.++|.++|+.++..++.. . .....|-+-.++-.|..+         ...++|...+.+..++
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~-~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~  255 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLES-D-ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI  255 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-c-CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence            6899999999999988899999999999996665 2 334457666666665432         3467899999999999


Q ss_pred             CCCcHHHHHHHHHH
Q 031176          117 APDWRQALGLKKTV  130 (164)
Q Consensus       117 eP~n~Qa~~L~~~I  130 (164)
                      +|+--.++.+-.++
T Consensus       256 ~~~~Y~GIN~AtLL  269 (374)
T PF13281_consen  256 EPDYYSGINAATLL  269 (374)
T ss_pred             CccccchHHHHHHH
Confidence            98876666555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=92.53  E-value=1.4  Score=40.60  Aligned_cols=122  Identities=16%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             hhhhhhhcccccCCCCCCC------CCHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 031176            6 SKFFDSIGSFFTGGDQIPW------CDRDIIAGCEREVAEA--NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASL   77 (164)
Q Consensus         6 ~~~~~~~~~~~~~~~~lp~------~~~~~l~~~e~~y~~~--~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll   77 (164)
                      =.+|+.+.+-.+.+...|.      ...+=|..+|..-+..  .+..++++-+|.-+-...+..-. ....+-.++ ...
T Consensus       223 ~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~-~~~~~~~~~-~~~  300 (484)
T COG4783         223 PEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL-PNQQAADLL-AKR  300 (484)
T ss_pred             HHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc-cccchHHHH-HHH
Confidence            3455555552244444443      3445566677665555  33344555555555554432211 111222222 212


Q ss_pred             hCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176           78 ANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus        78 ~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      .   . +......|-.|+.+|..|+|+.|+...+.++...|+|.=+.++...|.-+
T Consensus       301 ~---~-~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~  352 (484)
T COG4783         301 S---K-RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE  352 (484)
T ss_pred             h---C-ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            2   1 25568999999999999999999999999999999999999998887543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=92.53  E-value=0.91  Score=43.91  Aligned_cols=95  Identities=16%  Similarity=0.118  Sum_probs=75.4

Q ss_pred             HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176           36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL  114 (164)
Q Consensus        36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL  114 (164)
                      .|++. +-+..++++.|.+|.-..   ...++..|.....+.+.-  .+...-.+|-+||+...-.++|..|+..++.+|
T Consensus       466 ale~av~~d~~dp~~if~lalq~A---~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  466 ALEEAVQFDPTDPLVIFYLALQYA---EQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHH---HHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            34444 556667899999998888   667788888888887774  244556899999999999999999999999999


Q ss_pred             hhCCCcHHHHHHHHHHHhHhh
Q 031176          115 EIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus       115 ~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .--|+|.+-..++-.|+-...
T Consensus       541 ~E~~~N~~l~~~~~~i~~~~~  561 (799)
T KOG4162|consen  541 EEFGDNHVLMDGKIHIELTFN  561 (799)
T ss_pred             HHhhhhhhhchhhhhhhhhcc
Confidence            999999888887777766543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.35  E-value=1.4  Score=41.08  Aligned_cols=79  Identities=15%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|++. +-++++.=+..++++++-   +...+......+++..++   -+.-.||+-+.|-...-.++|++|.++++.+
T Consensus       415 aDF~Kai~L~pe~~~~~iQl~~a~Y---r~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  415 ADFQKAISLDPENAYAYIQLCCALY---RQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHhhcChhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            334443 446667778888899999   455788889999998886   3466699999999999999999999999999


Q ss_pred             HhhCCC
Q 031176          114 LEIAPD  119 (164)
Q Consensus       114 L~~eP~  119 (164)
                      .+++|.
T Consensus       489 i~LE~~  494 (606)
T KOG0547|consen  489 IELEPR  494 (606)
T ss_pred             Hhhccc
Confidence            999999

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=92.23  E-value=2.3  Score=38.17  Aligned_cols=75  Identities=20%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ++..+-+|-.++..   ++-.+||.+|.+.+..  .| +.-+-|-.-|--+.+.++|+.|+.+++++.++-|++-..-..
T Consensus       200 pev~~~LA~v~l~~---~~E~~AI~ll~~aL~~--~p-~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~  273 (395)
T PF09295_consen  200 PEVAVLLARVYLLM---NEEVEAIRLLNEALKE--NP-QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ  273 (395)
T ss_pred             CcHHHHHHHHHHhc---CcHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45666677777743   3346788888888875  23 445777777777888888888888888888888887765554


Q ss_pred             H
Q 031176          127 K  127 (164)
Q Consensus       127 ~  127 (164)
                      .
T Consensus       274 L  274 (395)
T PF09295_consen  274 L  274 (395)
T ss_pred             H
Confidence            3

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=92.20  E-value=1.5  Score=42.33  Aligned_cols=100  Identities=13%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ++.++++...+.-...++....+-++.-+-   ..+.+++++.+||+.++.   -++.+-.|..++..+-.+++.+.|+.
T Consensus       633 e~eraR~llakar~~sgTeRv~mKs~~~er---~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  633 ELERARDLLAKARSISGTERVWMKSANLER---YLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             cHHHHHHHHHHHhccCCcchhhHHHhHHHH---HhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence            455566666665444557777777777776   788999999999999996   56788889999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          109 ILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      .+.+-++.-|...--=-|...+|++.
T Consensus       707 aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  707 AYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             HHHhccccCCCCchHHHHHHHHHHHh
Confidence            99999999999987777777776653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.85  E-value=0.22  Score=27.21  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHH
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      .+++.||..+...|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            367899999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=91.79  E-value=2.4  Score=36.12  Aligned_cols=89  Identities=20%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ...+....+ .+++-++.   -.++-..+...+..++..   +...++.+--++...++.|+|.+|...+.++.++.|+|
T Consensus        61 ~~~p~d~~i-~~~a~a~~---~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d  133 (257)
T COG5010          61 LRNPEDLSI-AKLATALY---LRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD  133 (257)
T ss_pred             hcCcchHHH-HHHHHHHH---hcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence            445555666 88999988   444555666677775553   34456777778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhh
Q 031176          121 RQALGLKKTVEDRIAK  136 (164)
Q Consensus       121 ~Qa~~L~~~Ie~~~~~  136 (164)
                      ..+..++-.+=++.-+
T Consensus       134 ~~~~~~lgaaldq~Gr  149 (257)
T COG5010         134 WEAWNLLGAALDQLGR  149 (257)
T ss_pred             hhhhhHHHHHHHHccC
Confidence            9999998888665443

>PRK10941 hypothetical protein; Provisional

Probab=91.22  E-value=1.4  Score=37.46  Aligned_cols=77  Identities=16%  Similarity=0.134  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176           50 IMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus        50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      .=|+=++++   +.++..+|....+-++.-. .+|...||    -++.|++++.+..|+.=.+..|+..|+++.+..+|.
T Consensus       184 l~nLK~~~~---~~~~~~~AL~~~e~ll~l~P~dp~e~RD----RGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        184 LDTLKAALM---EEKQMELALRASEALLQFDPEDPYEIRD----RGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHH---HcCcHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            345566667   5667778887777766631 23444555    688899999999999999999999999999999999


Q ss_pred             HHHhH
Q 031176          129 TVEDR  133 (164)
Q Consensus       129 ~Ie~~  133 (164)
                      .|+.-
T Consensus       257 ql~~l  261 (269)
T PRK10941        257 QIHSI  261 (269)
T ss_pred             HHHHH
Confidence            88764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=90.98  E-value=2.4  Score=41.73  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +..+..|--|-   -.++.++|.++|.+.++.  +| ..-..+|+||..|-.+||.++|+.++-.+=.++|.|.
T Consensus       140 ~~ll~eAN~lf---arg~~eeA~~i~~EvIkq--dp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~  207 (895)
T KOG2076|consen  140 RQLLGEANNLF---ARGDLEEAEEILMEVIKQ--DP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY  207 (895)
T ss_pred             HHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--Cc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence            34444444444   569999999999999997  44 4447888888888887777777777555555555554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.82  E-value=1  Score=31.89  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE  115 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~  115 (164)
                      +..+.++|+...+..+++..+++++-..+=||+-+|...|+|.++++|.-+=+.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888999999999998666767777788999999999999999999765444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.80  E-value=3.4  Score=35.81  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           48 ESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        48 ~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      .+.-++|-+.|+. .....++.+.-+++++-.+ . ++. -.-+.-.|++|..+++|++|...++.+|..+|+++..
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~-~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-T-PPT-PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-c-CCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            3333455555544 3345699999999998775 2 323 4788899999999999999999999999999999644

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.80  E-value=0.34  Score=30.35  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL   90 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l   90 (164)
                      +++++|.+++   .-+|...|.++|++++.. ++++.+.++-
T Consensus         1 ~kLdLA~ayi---e~Gd~e~Ar~lL~evl~~-~~~~q~~eA~   38 (44)
T TIGR03504         1 TKLDLARAYI---EMGDLEGARELLEEVIEE-GDEAQRQEAR   38 (44)
T ss_pred             CchHHHHHHH---HcCChHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            4789999999   788999999999999975 5555554443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.71  E-value=1.5  Score=40.28  Aligned_cols=88  Identities=16%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +..+....=.||+.|-   ...+.++--.+...|+..   ....+.-|+--+-..|-.++|++|+.|.+..++.+|.|-|
T Consensus       262 dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~  335 (564)
T KOG1174|consen  262 NPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE  335 (564)
T ss_pred             ChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence            3445566667888887   555666666666666665   2344566776666778889999999999999999999999


Q ss_pred             HHHHHHHHHhHhhh
Q 031176          123 ALGLKKTVEDRIAK  136 (164)
Q Consensus       123 a~~L~~~Ie~~~~~  136 (164)
                      +.-||-..=..+.|
T Consensus       336 alilKG~lL~~~~R  349 (564)
T KOG1174|consen  336 ALILKGRLLIALER  349 (564)
T ss_pred             HHHhccHHHHhccc
Confidence            99988766554444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=90.69  E-value=0.61  Score=44.90  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ..|+.++...|+..++-  +| ..-+-||.+.-+..+++++..|.++..+.+.++|+|..+
T Consensus       498 ~~~fs~~~~hle~sl~~--np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea  555 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEI--NP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA  555 (777)
T ss_pred             chhHHHHHHHHHHHhhc--Cc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence            46778888888888875  23 445888888888888888888888888888888888743

>PRK11906 transcriptional regulator; Provisional

Probab=90.63  E-value=8.4  Score=35.44  Aligned_cols=106  Identities=12%  Similarity=0.012  Sum_probs=79.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHhc------CChhHHHHHHHHHHHHhhCCCCCCchHHHHH
Q 031176           22 IPWCDRDIIAGCEREVAEAN----DDKQKSESIMRLSWALVHS------RQAEDVQRGIAMLEASLANSSPPLQQREKLY   91 (164)
Q Consensus        22 lp~~~~~~l~~~e~~y~~~~----~~~~s~~~~F~yA~aLi~S------~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY   91 (164)
                      +-...|+.++++.....+..    .++.-..+.=-+|||....      ..+.+..+|.++-+..++.  ++ ...-+++
T Consensus       266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~-~Da~a~~  342 (458)
T PRK11906        266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TT-VDGKILA  342 (458)
T ss_pred             hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CC-CCHHHHH
Confidence            33456777777666666652    2333355555556665533      4578999999999998886  34 3448999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           92 LLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      .++.+..-.++++.|....++++.+.|+..++--+.-.+
T Consensus       343 ~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        343 IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            999999999999999999999999999999988877664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.55  E-value=0.78  Score=41.10  Aligned_cols=85  Identities=22%  Similarity=0.304  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           30 IAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        30 l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      |..|++.....+++.+..+.-+|+.+.+|   ..+|...|-..|+-.+..   +.+..+.+.+|||--.+.|+.+.|+.+
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV---~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsl  451 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAV---TIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSL  451 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEE---eccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHH
Confidence            45577777777777789999999999999   667777777777766654   446679999999999999999999999


Q ss_pred             HHHHHhhCCCc
Q 031176          110 LEQCLEIAPDW  120 (164)
Q Consensus       110 ~~~lL~~eP~n  120 (164)
                      ++.+=.+.|+-
T Consensus       452 l~~A~s~~P~m  462 (478)
T KOG1129|consen  452 LNAAKSVMPDM  462 (478)
T ss_pred             HHHhhhhCccc
Confidence            99999998874

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.86  Score=41.53  Aligned_cols=48  Identities=25%  Similarity=0.313  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176           85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus        85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      ..-.|+||++....=+.||+.|++|.-++++..|+ .-+...++.+.+-
T Consensus       245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~  292 (493)
T KOG2581|consen  245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKL  292 (493)
T ss_pred             HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHH
Confidence            45679999999999999999999999999999998 6666666665543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.30  E-value=5.3  Score=34.40  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=72.1

Q ss_pred             cccccCCCCCCCCCHHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHH
Q 031176           13 GSFFTGGDQIPWCDRDI-IAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLY   91 (164)
Q Consensus        13 ~~~~~~~~~lp~~~~~~-l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY   91 (164)
                      ..+|.+++.+|..+-++ +...++.|.+.     -..+.-.++-.++   ..+..+..++.|+.++..  +| -....++
T Consensus       123 ~~~~~~g~~~~d~~f~~WV~~~R~~l~e~-----~~~~l~~lae~~~---~~~~~~~~~~~l~~Li~~--dp-~~E~~~~  191 (280)
T COG3629         123 GELLSEGPVLGDDRFDEWVLEQRRALEEL-----FIKALTKLAEALI---ACGRADAVIEHLERLIEL--DP-YDEPAYL  191 (280)
T ss_pred             HHHhhcCCcCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---hcccHHHHHHHHHHHHhc--Cc-cchHHHH
Confidence            34555566666644333 33344444441     2334455666776   566778899999999986  45 4457778


Q ss_pred             HHHHHHHhhcchHHHHHHHHHH---HhhCCCcHHHHHHHHHHHhHhh
Q 031176           92 LLAVGYYRTGEYAKSRQILEQC---LEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        92 ~LAlg~~kl~~Y~~A~~~~~~l---L~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .|=-+|++.|++..|++.++++   +..++.=.++..+....++.+.
T Consensus       192 ~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~  238 (280)
T COG3629         192 RLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILR  238 (280)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhc
Confidence            8888999999999999998876   4455554445555554444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.04  E-value=3  Score=37.89  Aligned_cols=62  Identities=26%  Similarity=0.338  Sum_probs=53.0

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHH---HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKL---YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~l---Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ...++++||++....+-.   .   ++++   -|+|+.|||+.=|+-+-+.++--|+.-|+..=|+.|+..
T Consensus       163 mR~HYQeAIdvYkrvL~d---n---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac  227 (557)
T KOG3785|consen  163 MRMHYQEAIDVYKRVLQD---N---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC  227 (557)
T ss_pred             HHHHHHHHHHHHHHHHhc---C---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            467899999999987774   2   3444   699999999999999999999999999999999888753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=89.76  E-value=1.5  Score=36.70  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=53.1

Q ss_pred             hcCCCc--hHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176           41 NDDKQK--SESIMRLSWALVHSRQA-EDVQRGIAMLEASLA---NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL  114 (164)
Q Consensus        41 ~~~~~s--~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~---~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL  114 (164)
                      ..|.++  .....+.|-.+-   +. ++.++|++.+++.+.   ..+.+....+|+-.+|..+.++++|++|...++++.
T Consensus       106 ~~G~~~~aA~~~~~lA~~ye---~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  106 EAGRFSQAAKCLKELAEIYE---EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HCT-HHHHHHHHHHHHHHHC---CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            444443  445555555555   34 788888888887543   324455668999999999999999999999999998


Q ss_pred             hhCCCcH
Q 031176          115 EIAPDWR  121 (164)
Q Consensus       115 ~~eP~n~  121 (164)
                      +..-+++
T Consensus       183 ~~~l~~~  189 (282)
T PF14938_consen  183 KKCLENN  189 (282)
T ss_dssp             HTCCCHC
T ss_pred             HHhhccc
Confidence            8655444

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=89.71  E-value=0.93  Score=31.94  Aligned_cols=64  Identities=19%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             ChhHHHHHHHHHHHHhhCC---CCCC---chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANS---SPPL---QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~---~~~~---~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ..+|+..+++-|...+...   ..+.   ...-++..+|..++..|++++|...++.++++-.++..-..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~   79 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC   79 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence            3567777877777765532   1111   23567788999999999999999999999988765544333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=89.46  E-value=8.2  Score=35.71  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHh--cCC---hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Q 031176           23 PWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVH--SRQ---AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG   96 (164)
Q Consensus        23 p~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~--S~~---~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg   96 (164)
                      ...+++.+.+....+++. ..++....+.-.+|++...  +-.   ..++..+.+.++..+....++... ..+.-+|+.
T Consensus       351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~-~~~~ala~~  429 (517)
T PRK10153        351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP-RIYEILAVQ  429 (517)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-HHHHHHHHH
Confidence            334555566655555555 4444333333333332221  111   123444555544433321233333 566667778


Q ss_pred             HHhhcchHHHHHHHHHHHhhCCCc
Q 031176           97 YYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        97 ~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +...|++++|..+++++++++|+.
T Consensus       430 ~~~~g~~~~A~~~l~rAl~L~ps~  453 (517)
T PRK10153        430 ALVKGKTDEAYQAINKAIDLEMSW  453 (517)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCH
Confidence            778888888888888888888853

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=89.22  E-value=3  Score=35.11  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      -++.+++.+.+. ..+.-+.+....+|....+.  .+|.+.|..++|..++.  -+ ...++|....--..+++|.++||
T Consensus        16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~--~~d~~~A~~Ife~glk~--f~-~~~~~~~~Y~~~l~~~~d~~~aR   90 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYC--NKDPKRARKIFERGLKK--FP-SDPDFWLEYLDFLIKLNDINNAR   90 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT--CS-HHHHHHHHHHHHHH--HT-T-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhCcHHHHH
Confidence            356666666666 33344567777666665542  34566799999998886  23 34466655445556889999999


Q ss_pred             HHHHHHHhhCCCcHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGL  126 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ...++++..-|.+.+...|
T Consensus        91 ~lfer~i~~l~~~~~~~~i  109 (280)
T PF05843_consen   91 ALFERAISSLPKEKQSKKI  109 (280)
T ss_dssp             HHHHHHCCTSSCHHHCHHH
T ss_pred             HHHHHHHHhcCchhHHHHH
Confidence            9999999998888864433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=89.20  E-value=2.5  Score=41.89  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=70.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +..+.|.+|-|+=   +-+..++++..++.+++-  +| +.-.++-++|-.|... |.++|+++..++++..=+++|...
T Consensus       115 ~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~--D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~  187 (906)
T PRK14720        115 NKLALRTLAEAYA---KLNENKKLKGVWERLVKA--DR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG  187 (906)
T ss_pred             hhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence            4568899999988   667888999999999996  45 4459999999999999 999999999999999888889888


Q ss_pred             HHHHHHhHhhh
Q 031176          126 LKKTVEDRIAK  136 (164)
Q Consensus       126 L~~~Ie~~~~~  136 (164)
                      .++..++-+.-
T Consensus       188 ~~e~W~k~~~~  198 (906)
T PRK14720        188 IEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHHHHhc
Confidence            88876665544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.96  E-value=4.3  Score=31.87  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      +|+.|.. ...+...+..|-+|.+--   .-+++.+++.++..++..  +|.++ .                 |      
T Consensus        58 Le~l~~~-~~~~~rRe~lyYLAvg~y---RlkeY~~s~~yvd~ll~~--e~~n~-Q-----------------a------  107 (149)
T KOG3364|consen   58 LEDLLKS-AHPERRRECLYYLAVGHY---RLKEYSKSLRYVDALLET--EPNNR-Q-----------------A------  107 (149)
T ss_pred             HHHHhhh-cCcccchhhhhhhHHHHH---HHhhHHHHHHHHHHHHhh--CCCcH-H-----------------H------
Confidence            5777762 233346677777888877   567899999999999986  34332 2                 1      


Q ss_pred             HHhhCCCcHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 031176          113 CLEIAPDWRQALGLKKTVEDRIAK-DGVIGIGITATAVGLIAGGIAAALA  161 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~Ie~~~~~-dGliG~~i~~~a~~~~~g~~~~a~~  161 (164)
                       +.++      ..++..|.+.--. =+++|  =+++++|+++|+++.++.
T Consensus       108 -~~Lk------~~ied~itkegliGm~v~g--Ga~~~v~gl~g~~~~~~~  148 (149)
T KOG3364|consen  108 -LELK------ETIEDKITKEGLIGMVVVG--GAALAVGGLAGIASLAMR  148 (149)
T ss_pred             -HHHH------HHHHHHHhhcceeeeeehh--hHHHHHHHHHHHHHHHhc
Confidence             1111      2345556555433 34444  333356788888888765

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.37  E-value=13  Score=32.31  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH-
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL-  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~-  124 (164)
                      ......||+-|++   ..+++-+.++.-.++++.   .+...-++|--|-+|.-.=+-.+|+.=...+|+++|.-.-+. 
T Consensus       229 ~tpLllNy~QC~L---~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  229 ITPLLLNYCQCLL---KKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hhHHHHhHHHHHh---hHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            4677899999999   899999999999999986   345678999999999999999999999999999999854332 


Q ss_pred             HHHHHHHhHhh
Q 031176          125 GLKKTVEDRIA  135 (164)
Q Consensus       125 ~L~~~Ie~~~~  135 (164)
                      .=.+.++++++
T Consensus       303 rElr~le~r~~  313 (329)
T KOG0545|consen  303 RELRLLENRMA  313 (329)
T ss_pred             HHHHHHHHHHH
Confidence            22234444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=87.73  E-value=4.6  Score=33.73  Aligned_cols=84  Identities=24%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             HHHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           34 EREVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        34 e~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      ++.|.+.   -...++.+-.+.+|.+|.   ..++..++..+.++.+..  --.+.---+--||-+.+.++++..|..-.
T Consensus        73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~---elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          73 ERHLREATEELAIAPTVQNRYRLANALA---ELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             hHHHHHHHHHHhhchhHHHHHHHHHHHH---HhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            5666666   334567788888888888   777888888888887763  11222345566667777788888888888


Q ss_pred             HHHHhhCCCcHH
Q 031176          111 EQCLEIAPDWRQ  122 (164)
Q Consensus       111 ~~lL~~eP~n~Q  122 (164)
                      +.+.+-.|..++
T Consensus       148 e~l~e~~pa~r~  159 (251)
T COG4700         148 EDLMEYNPAFRS  159 (251)
T ss_pred             HHHhhcCCccCC
Confidence            888888877665

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.58  E-value=2  Score=40.05  Aligned_cols=66  Identities=8%  Similarity=0.117  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +...|-.++   +.++-++++..|.....-  +|.+ .|.+|+-+..++-+++|++|..=.+.+.+++|+|-
T Consensus       363 yI~~a~~y~---d~~~~~~~~~~F~~A~~l--dp~n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  363 YIKRAAAYA---DENQSEKMWKDFNKAEDL--DPEN-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHh---hhhccHHHHHHHHHHHhc--CCCC-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            333444445   555555666666665543  3433 37777777777777777777777777777777764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.21  E-value=3.6  Score=39.01  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------CCC------CchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------SPP------LQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~~~------~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +.+.+..||-|+.++   ..+++..|+++|+..++.-      ++.      .+..-|.-.||.++-.+|+-.+|...+.
T Consensus       172 e~syel~yN~Ac~~i---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~  248 (652)
T KOG2376|consen  172 EDSYELLYNTACILI---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV  248 (652)
T ss_pred             cchHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            347889999999999   8999999999998872110      111      1223466789999999999999999999


Q ss_pred             HHHhhCCCcHH
Q 031176          112 QCLEIAPDWRQ  122 (164)
Q Consensus       112 ~lL~~eP~n~Q  122 (164)
                      .+++..|-+.-
T Consensus       249 ~~i~~~~~D~~  259 (652)
T KOG2376|consen  249 DIIKRNPADEP  259 (652)
T ss_pred             HHHHhcCCCch
Confidence            99999998873

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=87.02  E-value=3.9  Score=36.96  Aligned_cols=81  Identities=17%  Similarity=0.108  Sum_probs=62.5

Q ss_pred             CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH----hhh
Q 031176           61 RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR----IAK  136 (164)
Q Consensus        61 ~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~----~~~  136 (164)
                      +..++.-+||.-..+.|..   .++..+.|---|-+|.-...|+.|..-++.+++++|+|+++++=++...+.    -+|
T Consensus       318 ~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kR  394 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKR  394 (504)
T ss_pred             cccCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence            3456778999999998885   345569999999999999999999999999999999999887655444332    234


Q ss_pred             hhHHHHHH
Q 031176          137 DGVIGIGI  144 (164)
Q Consensus       137 dGliG~~i  144 (164)
                      |-+.=+|+
T Consensus       395 DYYKILGV  402 (504)
T KOG0624|consen  395 DYYKILGV  402 (504)
T ss_pred             hHHHHhhh
Confidence            66653443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=86.86  E-value=3.9  Score=39.63  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .-.+-..++-|++.++-+   +-.+.+.+++-+...+.-  +| +.++.|.+|+-+|.++++-.+|.+....+|+.+-+|
T Consensus       513 ~~nplq~~~wf~~G~~AL---qlek~q~av~aF~rcvtL--~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  513 EINPLQLGTWFGLGCAAL---QLEKEQAAVKAFHRCVTL--EP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             hcCccchhHHHhccHHHH---HHhhhHHHHHHHHHHhhc--CC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            334457899999999999   888999999999888874  45 667999999999999999999999999999988665


Q ss_pred             H
Q 031176          121 R  121 (164)
Q Consensus       121 ~  121 (164)
                      -
T Consensus       587 w  587 (777)
T KOG1128|consen  587 W  587 (777)
T ss_pred             C
Confidence            4

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=86.65  E-value=9.9  Score=34.56  Aligned_cols=86  Identities=9%  Similarity=0.068  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      .+..+++.......-. +..+-|.+--+-+ ....+++++||+.++..+... .=+.-.+=|+|-++..|.-+.||++|.
T Consensus       248 ~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~-~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRY-PNSALFLFFEGRL-ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CHHHHHHHHHHHHHhC-CCcHHHHHHHHHH-HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            3444555554442211 1233344433333 125777888888888655421 112334567788888888888888888


Q ss_pred             HHHHHHHhh
Q 031176          108 QILEQCLEI  116 (164)
Q Consensus       108 ~~~~~lL~~  116 (164)
                      +++..+++.
T Consensus       326 ~~f~~L~~~  334 (468)
T PF10300_consen  326 EYFLRLLKE  334 (468)
T ss_pred             HHHHHHHhc
Confidence            888777775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.58  E-value=1.4  Score=24.03  Aligned_cols=29  Identities=14%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN   79 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~   79 (164)
                      ++.|++|++..   ..++..+|++.++.++..
T Consensus         1 ~a~~~~a~~~~---~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    1 DALYRLARCYY---KLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHH---HHCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH---HccCHHHHHHHHHHHHHH
Confidence            57899999999   578999999999999885

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=5.8  Score=35.44  Aligned_cols=60  Identities=12%  Similarity=0.113  Sum_probs=35.2

Q ss_pred             ChhHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           62 QAEDVQRGIAMLEASLANSS-PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~-~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ....++.|++...+-++... ||.-.--|+.+-|-+++-+|+|..|++=|.++|+.+|.+-
T Consensus        93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            34455666666666555432 2322233444666777777777777777777777777664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.14  E-value=13  Score=29.43  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      -+..++..+--+|..|   ..++..+|+.+|+++...   ++..--|=-.+|++.+-++|.+ =+.|.+.+|+-.| |++
T Consensus        40 RP~~~e~~~~~~~l~i---~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~  111 (160)
T PF09613_consen   40 RPEFPELDLFDGWLHI---VRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPD  111 (160)
T ss_pred             CCCchHHHHHHHHHHH---HhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChH
Confidence            3457788888889888   777888899999886654   4455567778888888888865 4677788888776 777


Q ss_pred             HHHHHHHHHhH
Q 031176          123 ALGLKKTVEDR  133 (164)
Q Consensus       123 a~~L~~~Ie~~  133 (164)
                      +..|-+.+...
T Consensus       112 a~~Lv~~Ll~~  122 (160)
T PF09613_consen  112 ARALVRALLAR  122 (160)
T ss_pred             HHHHHHHHHHh
Confidence            77776666554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=85.09  E-value=7.3  Score=36.53  Aligned_cols=52  Identities=15%  Similarity=0.165  Sum_probs=39.5

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      ..++++.|...++.++..  +|. ....+..|+-+|.+.|++++|.+..+.+-+.
T Consensus       506 ~~g~~~~a~~~~~~l~~~--~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        506 IHKNLELGRLAAEKLYGM--GPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HcCCcHHHHHHHHHHhCC--CCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            456778888888887764  343 3356778888899999999999998888755

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=85.02  E-value=15  Score=32.90  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ++..+++++|...+..  +| .-..+-..|+-.+...|+|..|.+.++++++.+|+
T Consensus       194 ~~~d~A~~~l~kAlqa--~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         194 SDVDRARELLKKALQA--DK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             hhHHHHHHHHHHHHhh--Cc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            3444455555554442  22 22233334455555555555555555555555554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=84.88  E-value=5.6  Score=37.71  Aligned_cols=88  Identities=11%  Similarity=-0.022  Sum_probs=63.6

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..-+......-|+|-+|++-.=.+|.-.|+.--...++-  +| ..--++|+||-+...++.|.+|+.+...+
T Consensus       395 ~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--n~-s~~kah~~la~aL~el~r~~eal~~~~al  471 (758)
T KOG1310|consen  395 SHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--NP-SIQKAHFRLARALNELTRYLEALSCHWAL  471 (758)
T ss_pred             HHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--Ch-HHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence            344444 333345567778888888777677777676666665653  34 44488999999999999999999999999


Q ss_pred             HhhCCCcHHHHH
Q 031176          114 LEIAPDWRQALG  125 (164)
Q Consensus       114 L~~eP~n~Qa~~  125 (164)
                      -...|.|.--+.
T Consensus       472 q~~~Ptd~a~~~  483 (758)
T KOG1310|consen  472 QMSFPTDVARQN  483 (758)
T ss_pred             hhcCchhhhhhh
Confidence            999996554333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=84.82  E-value=5.4  Score=35.62  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      -+.+.+|-..+   ..+-+.+|-.++..|+..   |.....++=.|...|-+.+|.++|....+++.++.|++.+..
T Consensus       108 lAl~qL~~Dym---~aGl~DRAE~~f~~L~de---~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e  178 (389)
T COG2956         108 LALQQLGRDYM---AAGLLDRAEDIFNQLVDE---GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE  178 (389)
T ss_pred             HHHHHHHHHHH---HhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence            44555666666   455677777777777764   667778888999999999999999999999999988877543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=84.80  E-value=9.8  Score=26.62  Aligned_cols=68  Identities=26%  Similarity=0.480  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH-HHHhhcchHHHHHHHHHHHhhCCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV-GYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl-g~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      .....+..+....   ...+...+++.++..+..  .+ .......+... .++..+++++|..++++++...|.
T Consensus        94 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  162 (291)
T COG0457          94 LAEALLNLGLLLE---ALGKYEEALELLEKALAL--DP-DPDLAEALLALGALYELGDYEEALELYEKALELDPE  162 (291)
T ss_pred             hHHHHHHHHHHHH---HHhhHHHHHHHHHHHHcC--CC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3444445444444   444567788888877764  12 22345555555 788888888888888888887773

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=84.40  E-value=9.4  Score=28.34  Aligned_cols=74  Identities=26%  Similarity=0.306  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH-----------HHHHHh
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL-----------KKTVED  132 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L-----------~~~Ie~  132 (164)
                      .+++.=+.=+|++++.++++.               -.+|++++.-++.+|+--  +.+...+           -..-++
T Consensus        15 ~el~~L~d~lEevL~ssg~~a---------------~~e~~~lR~r~~~~Lk~~--r~rl~~~~d~v~~~sk~a~~~tD~   77 (104)
T COG4575          15 AELQELLDTLEEVLKSSGSLA---------------GDEAEELRSKAESALKEA--RDRLGDTGDAVVQRSKAAADATDD   77 (104)
T ss_pred             HHHHHHHHHHHHHHHhcccch---------------hhHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHH
Confidence            345555556667776644432               235666666666666532  1122222           122233


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHH
Q 031176          133 RIAKDGVIGIGITATAVGLIAGG  155 (164)
Q Consensus       133 ~~~~dGliG~~i~~~a~~~~~g~  155 (164)
                      .+...=+-|+||+| ++|+++|.
T Consensus        78 yV~e~PWq~VGvaA-aVGlllGl   99 (104)
T COG4575          78 YVRENPWQGVGVAA-AVGLLLGL   99 (104)
T ss_pred             HHHcCCchHHHHHH-HHHHHHHH
Confidence            34445566777776 45777764

>PF13830 DUF4192: Domain of unknown function (DUF4192)

Probab=84.32  E-value=5.7  Score=34.09  Aligned_cols=70  Identities=24%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      .+-..+.+++..+.+. -.+..+-+.+-.+|+.+|..|+=..|.-+++++|+.+|+++=+.-|.+.+..-+
T Consensus       252 ~~a~~a~~lw~~~~r~-~~~~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~la~ll~~~l~~g~  321 (324)
T PF13830_consen  252 EHAQAAERLWRALARR-LPGPWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHSLAQLLDQALQAGL  321 (324)
T ss_pred             ccchHHHHHHHHHHHh-cCCccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCcHHHHHHHHHHcCC
Confidence            3445688889888887 445567799999999999999999999999999999999999998888876543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.84  E-value=4.2  Score=28.36  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |.+|....-++++..|++.+-.-.++.|.+-+.|
T Consensus        29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R   62 (75)
T cd02682          29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR   62 (75)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            3455556778889999999999999999887776

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=83.83  E-value=6.6  Score=25.91  Aligned_cols=31  Identities=23%  Similarity=0.472  Sum_probs=25.9

Q ss_pred             chHHHHHHHHH--HHHhhcchHHHHHHHHHHHh
Q 031176           85 QQREKLYLLAV--GYYRTGEYAKSRQILEQCLE  115 (164)
Q Consensus        85 ~~rd~lY~LAl--g~~kl~~Y~~A~~~~~~lL~  115 (164)
                      .+||+...|-+  |+..+|+|++|.+|++.+.+
T Consensus        19 ~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   19 QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67899988776  67899999999999998865

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=83.73  E-value=6.7  Score=33.49  Aligned_cols=38  Identities=16%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +...+.+.||++=+..-|||+-|....+.+|+++|.+.
T Consensus        96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            35569999999999999999999999999999999876

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.13  E-value=4.4  Score=28.03  Aligned_cols=34  Identities=18%  Similarity=0.320  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |.+|+.++..+++.+|+...-..+++.|.+.+.|
T Consensus        29 Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~R   62 (77)
T cd02683          29 YQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDR   62 (77)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            4566777888899999998888888888887766

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=82.86  E-value=17  Score=33.42  Aligned_cols=107  Identities=14%  Similarity=0.068  Sum_probs=72.5

Q ss_pred             HHHHHHHH-hcCCC----chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           33 CEREVAEA-NDDKQ----KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        33 ~e~~y~~~-~~~~~----s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      .+..|-+. ..++.    +...+.|.|-..+   ..+..++||.-.+..+.-  ++ .--..+---|-+|.-++++++|.
T Consensus       268 A~E~Yteal~idP~n~~~naklY~nra~v~~---rLgrl~eaisdc~~Al~i--D~-syikall~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  268 AYECYTEALNIDPSNKKTNAKLYGNRALVNI---RLGRLREAISDCNEALKI--DS-SYIKALLRRANCHLALEKWEEAV  341 (486)
T ss_pred             HHHHHHHhhcCCccccchhHHHHHHhHhhhc---ccCCchhhhhhhhhhhhc--CH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555 22322    3344455555444   477788899998888885  33 33467777899999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHhH---hhhhhHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKKTVEDR---IAKDGVIGIGIT  145 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~Ie~~---~~~dGliG~~i~  145 (164)
                      ++++.+++.+-+..--++|++....-   -.+|-+.=+||.
T Consensus       342 ~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~  382 (486)
T KOG0550|consen  342 EDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGIS  382 (486)
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhh
Confidence            99999999998866666666665442   244666555554

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.73  E-value=7.8  Score=25.59  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |.+|..++..+++.+|+.++-..|++.+..-+.|
T Consensus        28 Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R   61 (69)
T PF04212_consen   28 YKEAIEYLMQALKSESNPERRQALRQKMKEYLER   61 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            4566777888999999888888899998887776

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.63  E-value=17  Score=28.45  Aligned_cols=64  Identities=19%  Similarity=0.130  Sum_probs=52.3

Q ss_pred             hcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           59 HSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        59 ~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      .+.++.....-++..++.++.  .| + .+.+..++..+..+|+.++|++..+++...-|.++-.+.+
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~--~P-~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~  183 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRR--RP-D-PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ  183 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHh--CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            567788888899999998885  23 2 3667778999999999999999999999999966655544

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PLN03218 maturation of RBCL 1; Provisional

Probab=82.47  E-value=31  Score=34.88  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHH-hcC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176           29 IIAGCEREVAEA-NDD-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS  106 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A  106 (164)
                      .+..+.+.+.+. ..+ .++..+.-.+..++.   +.+++++|++++++.... +-.++ ...|..|--+|.+.|++++|
T Consensus       664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~---k~G~~eeA~~lf~eM~~~-g~~Pd-vvtyN~LI~gy~k~G~~eeA  738 (1060)
T PLN03218        664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACS---NAKNWKKALELYEDIKSI-KLRPT-VSTMNALITALCEGNQLPKA  738 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence            334444444444 233 344555555555555   455667777777775543 21222 35666777777777777777


Q ss_pred             HHHHHHHHh--hCCCcHHHHHH
Q 031176          107 RQILEQCLE--IAPDWRQALGL  126 (164)
Q Consensus       107 ~~~~~~lL~--~eP~n~Qa~~L  126 (164)
                      .++++.+.+  +.|+..-+..|
T Consensus       739 lelf~eM~~~Gi~Pd~~Ty~sL  760 (1060)
T PLN03218        739 LEVLSEMKRLGLCPNTITYSIL  760 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHH
Confidence            777777664  45665444333

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.72  E-value=11  Score=25.45  Aligned_cols=34  Identities=6%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |.+|..++-.+++.+|+...-..+++.+...+.|
T Consensus        29 Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~R   62 (75)
T cd02678          29 YQHALEYFMHALKYEKNPKSKESIRAKCTEYLDR   62 (75)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            5567777888889999887778888888877766

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=81.34  E-value=5.2  Score=36.87  Aligned_cols=101  Identities=13%  Similarity=0.068  Sum_probs=74.5

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+=..|.+. .-++......=+-|.+.+   ..++...|+.=+...++.  +| ..--|+|.=|.++.++++|.+|+.-.
T Consensus        22 ~avdlysKaI~ldpnca~~~anRa~a~l---K~e~~~~Al~Da~kaie~--dP-~~~K~Y~rrg~a~m~l~~~~~A~~~l   95 (476)
T KOG0376|consen   22 VAVDLYSKAIELDPNCAIYFANRALAHL---KVESFGGALHDALKAIEL--DP-TYIKAYVRRGTAVMALGEFKKALLDL   95 (476)
T ss_pred             HHHHHHHHHHhcCCcceeeechhhhhhe---eechhhhHHHHHHhhhhc--Cc-hhhheeeeccHHHHhHHHHHHHHHHH
Confidence            334456665 223222222223355666   566777788777777775  34 55588889999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHhHhhhhh
Q 031176          111 EQCLEIAPDWRQALGLKKTVEDRIAKDG  138 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~Ie~~~~~dG  138 (164)
                      +....+.|+.++++..-.+.+..+++.+
T Consensus        96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   96 EKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             HHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988877744

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.32  E-value=3.2  Score=38.96  Aligned_cols=47  Identities=15%  Similarity=0.075  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhCC--CcHHHHHHHHHHHhHhh
Q 031176           89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAP--DWRQALGLKKTVEDRIA  135 (164)
Q Consensus        89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP--~n~Qa~~L~~~Ie~~~~  135 (164)
                      -+|+||.++.-.++|++|+.++..+..+-|  -|.||..|...|+=.+-
T Consensus       621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G  669 (696)
T KOG2471|consen  621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLG  669 (696)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcC
Confidence            459999999999999999999999998888  79999999999876543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.15  E-value=15  Score=30.36  Aligned_cols=58  Identities=24%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHhhcchHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP-LQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~-~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      +++.+|.+|-=.+    ..|-.+++.+|...+.-.... .-..|-+..||-.|+++++|+.|-
T Consensus       140 t~elq~aLAtyY~----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYT----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5666666665555    456678888888877742211 234588999999999999999873

>PRK10132 hypothetical protein; Provisional

Probab=80.78  E-value=20  Score=26.51  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031176          124 LGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK  164 (164)
Q Consensus       124 ~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~~~~a~~r~~  164 (164)
                      +.--...++.+...=+.++||+++ ||.++|.+   ++|||
T Consensus        72 ~~a~~~~~~~V~~~Pw~svgiaag-vG~llG~L---l~RR~  108 (108)
T PRK10132         72 RDAVGCADTFVRERPWCSVGTAAA-VGIFIGAL---LSLRK  108 (108)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHH---HhccC
Confidence            333334455677778888888874 67777653   55664

>PRK10941 hypothetical protein; Provisional

Probab=80.26  E-value=2.8  Score=35.73  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      -+-+|=.+|.+.++|++|+++++++|.+.|++.-
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~  216 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY  216 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH
Confidence            3457778899999999999999999999999884

>PLN03218 maturation of RBCL 1; Provisional

Probab=80.21  E-value=35  Score=34.50  Aligned_cols=56  Identities=14%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh--hCCC
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE--IAPD  119 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~--~eP~  119 (164)
                      +.+++++|.+++++..+. +-+++ ...+..|--+|.+.|++++|++.++.+.+  +.|+
T Consensus       661 k~G~~eeA~~l~~eM~k~-G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd  718 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQ-GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT  718 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            344566666666665554 22222 24555566666666666666666666644  3454

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=80.21  E-value=27  Score=33.69  Aligned_cols=93  Identities=22%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CCCHHHHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176           24 WCDRDIIAGCEREVAEA--------NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV   95 (164)
Q Consensus        24 ~~~~~~l~~~e~~y~~~--------~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl   95 (164)
                      |--.--+.+-+++|.+.        ..++.+.+....+|..-+   +-++.+--.+-=..++..   .+.+|..|.-+|+
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~---QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Av  151 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI---QMRDYEGYLETRNQLLQL---RPSQRASWIGFAV  151 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHH
Confidence            33344567777787777        335666677777776666   444444333333333432   4577899999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhC---CCcHH
Q 031176           96 GYYRTGEYAKSRQILEQCLEIA---PDWRQ  122 (164)
Q Consensus        96 g~~kl~~Y~~A~~~~~~lL~~e---P~n~Q  122 (164)
                      ++.-+|+|..|...++..-+..   |+..-
T Consensus       152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~  181 (700)
T KOG1156|consen  152 AQHLLGEYKMALEILEEFEKTQNTSPSKED  181 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence            9999999999999998888877   65543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1iyg_A	133	Solution Structure Of Rsgi Ruh-001, A Fis1p-Like An		4e-08
1pc2_A	152	Solution Structure Of Human Mitochondria Fission Pr		5e-08
1nzn_A	126	Cytosolic Domain Of The Human Mitchondrial Fission		6e-08
1y8m_A	144	Solution Structure Of Yeast Mitochondria Fission Pr		9e-06
3o48_A	134	Crystal Structure Of Fission Protein Fis1 From Sacc		9e-06
2pqn_A	129	Crystal Structure Of Yeast Fis1 Complexed With A Fr		9e-06

>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi- 135 Homologous Domain From A Mouse Cdna Length = 133

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  ED++RGI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 46  AWCLVRSKYNEDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 104
Query: 114 LEIAPDWRQALGLKKTVEDRIAK 136
           L+  P   QA  L++ ++  + K
Sbjct: 105 LQTEPQNNQAKELERLIDKAMKK 127

>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein Fis1 Length = 152

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV S+  +D+++GI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 39  AWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97
Query: 114 LEIAPDWRQALGLKKTVEDRIAKD 137
           L+  P   QA  L++ ++  + KD
Sbjct: 98  LQTEPQNNQAKELERLIDKAMKKD 121

>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein Fis1 Adopts A Tpr Fold Length = 126

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 54  SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
           +W LV +R  +D+++GI +LE  L   S   +QR+ ++ LAVG YR  EY K+ + +   
Sbjct: 42  AWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 100
Query: 114 LEIAPDWRQALGLKKTVEDRIAKD 137
           L+  P   QA  L++ ++    KD
Sbjct: 101 LQTEPQNNQAKELERLIDKAXKKD 124

>pdb|1Y8M|A Chain A, Solution Structure Of Yeast Mitochondria Fission Protein Fis1 Length = 144

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48  ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
           +S    +W L+ S    D + G+ +L      +    ++RE LY L +G Y+ GEY+ ++
Sbjct: 40  QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 97
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
           + ++   E   + +Q   LK  VED+I K+
Sbjct: 98  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127

>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From Saccharomyces Cerevisiae Length = 134

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48  ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
           +S    +W L+ S    D + G+ +L      +    ++RE LY L +G Y+ GEY+ ++
Sbjct: 41  QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 98
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
           + ++   E   + +Q   LK  VED+I K+
Sbjct: 99  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128

>pdb|2PQN|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment Of Yeast Mdv1 Length = 129

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48  ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
           +S    +W L+ S    D + G+ +L      +    ++RE LY L +G Y+ GEY+ ++
Sbjct: 40  QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 97
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
           + ++   E   + +Q   LK  VED+I K+
Sbjct: 98  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1pc2_A	152	Mitochondria fission protein; unknown function; NM	6e-47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	6e-45
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	3e-40
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	3e-38
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-06

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Length = 152

 Score =  149 bits (377), Expect = 6e-47
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 34  EREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL 93
           ++  +E         +    +W LV S+  +D+++GI +LE  L   S   +QR+ ++ L
Sbjct: 19  KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYL 77

Query: 94  AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIA 153
           AVG YR  EY K+ + +   L+  P   QA  L++ ++  + KDG++G+ I      L  
Sbjct: 78  AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMA-LGV 136

Query: 154 GGIAAALARKK 164
            G+A  +  + 
Sbjct: 137 AGLAGLIGLEH 147

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 144

 Score =  143 bits (363), Expect = 6e-45
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 28  DIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQR 87
             +    ++V          +S    +W L+ S    D + G+ +L      +    ++R
Sbjct: 20  QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRR 77

Query: 88  EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITAT 147
           E LY L +G Y+ GEY+ +++ ++   E   + +Q   LK  VED+I K+ + G+     
Sbjct: 78  ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGVV---- 133

Query: 148 AVGLIAGGIAAA 159
               +AGG+   
Sbjct: 134 ----VAGGVHHH 141

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Length = 126

 Score =  131 bits (330), Expect = 3e-40
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 34  EREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL 93
           ++  +E         +    +W LV +R  +D+++GI +LE  L   S   +QR+ ++ L
Sbjct: 22  KKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYL 80

Query: 94  AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV 139
           AVG YR  EY K+ + +   L+  P   QA  L++ ++  + KDG+
Sbjct: 81  AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 126

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Length = 134

 Score =  126 bits (318), Expect = 3e-38
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 34  EREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL 93
            ++V          +S    +W L+ S    D + G+ +L      +    ++RE LY L
Sbjct: 27  RQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYL 84

Query: 94  AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
            +G Y+ GEY+ +++ ++   E   + +Q   LK  VED+I K+
Sbjct: 85  TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 128

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 36/65 (55%)

Query: 67  QRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126
           ++ +  L+ASL           KLY                         A D   AL +
Sbjct: 19  KQALKKLQASL-----------KLY-------------------------ADDSAPALAI 42

Query: 127 KKTVE 131
           K T+E
Sbjct: 43  KATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	100.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	100.0
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	100.0
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.02
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.01
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.97
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.92
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.83
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.79
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.75
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.69
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.67
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.66
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.6
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.53
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.41
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.4
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.36
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.35
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.33
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.28
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.28
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.27
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.27
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.27
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.2
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.2
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.13
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.1
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.1
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.03
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.02
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.02
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.93
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.9
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.9
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.87
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.81
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.71
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.67
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.55
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.48
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.48
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.37
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.36
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.29
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.27
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.24
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.24
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.19
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.14
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.94
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.94
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.92
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.76
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.69
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.65
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.64
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.5
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.5
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.28
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.24
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.23
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.21
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.01
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.36
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.98
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.66
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	94.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.98
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.75
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.62
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	93.47
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	92.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	91.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.32
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.23
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.73
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	88.92
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.71
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.2
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	87.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	86.19
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	84.6
2lbg_A	27	Major prion protein; conserved hydrophobic region,	83.01
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	82.85
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	82.44
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	81.81
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.58
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	80.87
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	80.43

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-44  Score=279.13  Aligned_cols=128  Identities=23%  Similarity=0.394  Sum_probs=119.5

Q ss_pred             CCCCCCC-------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH
Q 031176           18 GGDQIPW-------CDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL   90 (164)
Q Consensus        18 ~~~~lp~-------~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l   90 (164)
                      +.|.+|+       .+|++|+.+|++|+++..+.++++++|+|||+||||+++.|+++||.||+++++.  +|.++|||+
T Consensus         3 ~~~~~~~~~~~~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcL   80 (144)
T 1y8m_A            3 KVDFWPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECL   80 (144)
T ss_dssp             TTCSSCCSGGGGCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHH
T ss_pred             CCCcchhHHHhcCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHH
Confidence            3456665       7999999999999998446889999999999999999999999999999999985  678999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q 031176           91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITAT  147 (164)
Q Consensus        91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~  147 (164)
                      ||||+||||+|||++|++||+.+|+++|+|+||++|+++|+++|+|||+|||||+||
T Consensus        81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kdGliG~ai~gg  137 (144)
T 1y8m_A           81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGVVVAGG  137 (144)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTTTTCCCCCS
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhchhhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999864

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-42  Score=270.58  Aligned_cols=129  Identities=26%  Similarity=0.490  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      .+|++|.+||++|+++ .+++++.+++|+|||+|+||+++.++++||.+|+++++. ..|.++|||+||||++|||++||
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCccchHHHHHHHHHHHHHccCH
Confidence            7899999999999999 778889999999999999999999999999999999996 23558899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGG  155 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~  155 (164)
                      ++|++|++++|+++|+|+||+.|++.|++++++||++||||+||+ |+++||
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl~G~~i~gg~-~~~~~g  138 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGM-ALGVAG  138 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCCCSSCSSSS-SCCSSC
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999999999998765 344433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=100.00  E-value=1.1e-39  Score=248.80  Aligned_cols=124  Identities=23%  Similarity=0.378  Sum_probs=113.2

Q ss_pred             cccCCCCCC-CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176           15 FFTGGDQIP-WCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL   93 (164)
Q Consensus        15 ~~~~~~~lp-~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L   93 (164)
                      |.+...++. +.+|++|..||++|+++.+|.+|++++|+|||+||||+++.|+++||.+|+++++.  +|.++|||+|||
T Consensus         7 ~~p~~~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyL   84 (134)
T 3o48_A            7 FWPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYL   84 (134)
T ss_dssp             CCCCTTGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred             ccchHHHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHH
Confidence            444433332 38999999999999997678899999999999999999999999999999999985  577899999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHH
Q 031176           94 AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVI  140 (164)
Q Consensus        94 Alg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGli  140 (164)
                      |+||||+|||++|++|++.+|+++|+|+||++|+++|+++|+|||-+
T Consensus        85 Avg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd~~~  131 (134)
T 3o48_A           85 TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKEENL  131 (134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999853

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=100.00  E-value=2.8e-39  Score=244.63  Aligned_cols=114  Identities=26%  Similarity=0.492  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      .+|++|++||++|+++ .+++++++++|+|||+||||+++.++++||.||+++++. ++|.++|||+||||+||||+|+|
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhH
Confidence            5789999999999999 667799999999999999999999999999999999986 44668999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhH
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV  139 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGl  139 (164)
                      ++|++|++.+|+++|+|+||++|+++|+++|+|||+
T Consensus        91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~kdGl  126 (126)
T 1nzn_A           91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL  126 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999996

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.02  E-value=4.6e-09  Score=75.64  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=74.6

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|.+. ..++.++.+.+++|.++.   ..++..+|++.++..+..  +| ...+++|.+|.+|.++|+|++|+++++
T Consensus        32 A~~~~~~al~~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           32 AMRHYNEAVKRDPENAILYSNRAACLT---KLMEFQRALDDCDTCIRL--DS-KFIKGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHhhHHH---hhccHHHHHHHHHHHHHh--hh-hhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34445554 456678999999999999   667889999999999986  34 446999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHH
Q 031176          112 QCLEIAPDWRQALGL  126 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L  126 (164)
                      ++|+++|+|.++..-
T Consensus       106 ~al~l~P~~~~a~~~  120 (126)
T 4gco_A          106 DALQVDPSNEEAREG  120 (126)
T ss_dssp             HHHHHCTTCHHHHHH
T ss_pred             HHHHHCcCCHHHHHH
Confidence            999999999998753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.01  E-value=2e-09  Score=75.57  Aligned_cols=88  Identities=10%  Similarity=0.083  Sum_probs=79.1

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++++++..+.||-+|+.+.+.....++..+|+..+..  +| +....+++|+..+++.|+|++|..+|+++|+.+|+++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4568999999999999888888889999999999996  45 44599999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhH
Q 031176          123 ALGLKKTVEDR  133 (164)
Q Consensus       123 a~~L~~~Ie~~  133 (164)
                      ...+.+.|++.
T Consensus        79 ~~~i~~~I~~A   89 (93)
T 3bee_A           79 RVTIIESINKA   89 (93)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888888774

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.97  E-value=8.1e-09  Score=80.11  Aligned_cols=106  Identities=18%  Similarity=0.251  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176           25 CDRDIIAGCEREVAEA----NDDKQKSESIMRLSWALVHSRQA-------EDVQRGIAMLEASLANSSPPLQQREKLYLL   93 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~----~~~~~s~~~~F~yA~aLi~S~~~-------~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L   93 (164)
                      ++.+-+..+|......    ..++.++++.++++-+|+...+.       +.+++||..|+..+..  +| +..+.||+|
T Consensus        10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP-~~~~A~~~L   86 (158)
T 1zu2_A           10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DP-KKDEAVWCI   86 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CT-TCHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--Cc-CcHHHHHHH
Confidence            5788888887665555    55667899999999999955432       3578999999999996  34 567999999


Q ss_pred             HHHHHhhc-----------chHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176           94 AVGYYRTG-----------EYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus        94 Alg~~kl~-----------~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      +.+|+.+|           +|++|++|++++|+++|+|..+..-.+.+++.
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            99999985           99999999999999999999998888877765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.4e-08  Score=71.04  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=81.3

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++.++.+.+++|.++.   ..++..+|+..++..+..  +| ...+++|.+|.++.++|+|++|+.+
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~~~~~~A~~~   94 (126)
T 3upv_A           21 PNAVKAYTEMIKRAPEDARGYSNRAAALA---KLMSFPEAIADCNKAIEK--DP-NFVRAYIRKATAQIAVKEYASALET   94 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHHhCHHHHHHH
Confidence            3444555555 445667899999999999   567888999999999986  34 4469999999999999999999999


Q ss_pred             HHHHHhhC------CCcHHHHHHHHHHHhHh
Q 031176          110 LEQCLEIA------PDWRQALGLKKTVEDRI  134 (164)
Q Consensus       110 ~~~lL~~e------P~n~Qa~~L~~~Ie~~~  134 (164)
                      ++++++++      |+|..+......+..++
T Consensus        95 ~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           95 LDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999      99999988888877664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.92  E-value=8.6e-09  Score=74.40  Aligned_cols=96  Identities=6%  Similarity=-0.046  Sum_probs=75.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ..++.++...++++.++.   ..++..+|+..++..+..  +| +..+.+|++|.++.++|+|++|++++++
T Consensus        38 ~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (142)
T 2xcb_A           38 QKIFQALCMLDHYDARYFLGLGACRQ---SLGLYEQALQSYSYGALM--DI-NEPRFPFHAAECHLQLGDLDGAESGFYS  111 (142)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444 445567888889999888   566788899999998885  34 3458889999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHhHhh
Q 031176          113 CLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      ++++.|+|++...++..+...+.
T Consensus       112 al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A          112 ARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999888887777766543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.90  E-value=2.2e-08  Score=75.28  Aligned_cols=110  Identities=13%  Similarity=0.074  Sum_probs=77.4

Q ss_pred             hhhhhhhcccccCCCCCCC---CCHHHHHHH----------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhH
Q 031176            6 SKFFDSIGSFFTGGDQIPW---CDRDIIAGC----------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAED   65 (164)
Q Consensus         6 ~~~~~~~~~~~~~~~~lp~---~~~~~l~~~----------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d   65 (164)
                      +.+-..+.+|+.++..+..   .+|+.....                ...|.+. ..++.++...++++.++.   ..++
T Consensus         9 ~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~---~~g~   85 (151)
T 3gyz_A            9 ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ---IKEQ   85 (151)
T ss_dssp             CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTC
T ss_pred             HHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcc
Confidence            4455666677777666555   566554432                3333333 445567788888888888   5667


Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ..+|++.++..+..  +| +..+.+|++|.+|.++|+|++|+.+++++|++.|+.+
T Consensus        86 ~~~Ai~~~~~al~l--~P-~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           86 FQQAADLYAVAFAL--GK-NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHHH--SS-SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            78888888888775  34 3448888888888888888888888888888888876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=4.2e-08  Score=67.90  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      +++.|.++.++.   ..++..+|+..++..+..  .|..  ..+++|++|..++++|+|++|+.+++.+++..|++..+.
T Consensus        39 ~~~~~~lg~~~~---~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  113 (129)
T 2xev_A           39 PNALYWLGESYY---ATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR  113 (129)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             HHHHHHHHHHHH---HhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence            389999999999   567889999999999886  2333  268999999999999999999999999999999999998


Q ss_pred             HHHHHHHhH
Q 031176          125 GLKKTVEDR  133 (164)
Q Consensus       125 ~L~~~Ie~~  133 (164)
                      ..+..+...
T Consensus       114 ~a~~~l~~l  122 (129)
T 2xev_A          114 VAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.89  E-value=1.6e-08  Score=74.57  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=76.5

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.++...++++.++.   ..++..+|++.++..+..  +| +..+.+|++|.+|.++|+|++|+.+++++
T Consensus        42 ~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           42 XVFQALCVLDHYDSRFFLGLGACRQ---AMGQYDLAIHSYSYGAVM--DI-XEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334443 445667889999999998   567788999999998885  34 34589999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHhHhh
Q 031176          114 LEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus       114 L~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      +++.|+|++...+++.++..+.
T Consensus       116 l~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A          116 QELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHCcCCCcchHHHHHHHHHHH
Confidence            9999999888877777766544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.84  E-value=1.3e-08  Score=71.16  Aligned_cols=94  Identities=15%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             HHHHHHH-hc---CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           34 EREVAEA-ND---DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        34 e~~y~~~-~~---~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ...|.+. ..   ++....+.++++.++.   ..++..+|++.++..+..  +| +..+.++++|.+++++|+|++|+.+
T Consensus        10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A           10 VPYYEKAIASGLQGKDLAECYLGLGSTFR---TLGEYRKAEAVLANGVKQ--FP-NHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CchHHHHHHHHHHHHcCCHHHHHHH
Confidence            4455555 22   3456789999999999   677889999999999986  34 4469999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHhH
Q 031176          110 LEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      ++++|+..|+++........|...
T Consensus        84 ~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           84 LLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHH
Confidence            999999999999998887777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=7.8e-08  Score=64.22  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=75.4

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +.+.|.+. ..++.++...+++|.++.   ..++..+|+..++..+..  +| ...++++.+|..+.++|+|++|+.+++
T Consensus        23 A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           23 ALQCYSEAIKLDPHNHVLYSNRSAAYA---KKGDYQKAYEDGCKTVDL--KP-DWGKGYSRKAAALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHH---hhccHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34445544 344557889999999998   567888999999998885  34 445899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHh
Q 031176          112 QCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      .+++..|++..+......+.+
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           97 EGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHhhc
Confidence            999999999988776666543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.82  E-value=3.7e-08  Score=72.14  Aligned_cols=85  Identities=9%  Similarity=0.071  Sum_probs=71.2

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+...|.+. ..++.+....+++++++.   ..++..+|+..++..+..  +| ...+++|++|..|+++|+|++|+.++
T Consensus        29 ~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~  102 (164)
T 3sz7_A           29 KAIDLYTQALSIAPANPIYLSNRAAAYS---ASGQHEKAAEDAELATVV--DP-KYSKAWSRLGLARFDMADYKGAKEAY  102 (164)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHccCHHHHHHHH
Confidence            334445555 445567899999999999   567889999999999986  34 45699999999999999999999999


Q ss_pred             HHHHhhCCCcHH
Q 031176          111 EQCLEIAPDWRQ  122 (164)
Q Consensus       111 ~~lL~~eP~n~Q  122 (164)
                      +++|+++|+|..
T Consensus       103 ~~al~~~p~~~~  114 (164)
T 3sz7_A          103 EKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHSSSCC
T ss_pred             HHHHHhCCCchH
Confidence            999999999987

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.81  E-value=3.6e-08  Score=72.12  Aligned_cols=83  Identities=13%  Similarity=0.067  Sum_probs=70.2

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH-HHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR-QAL  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~-Qa~  124 (164)
                      ...+.+++|.++.   ..++..+|+..++..+..  +| ....++|.+|.+|+++|+|++|+.+++++|+++|+|. .+.
T Consensus        62 ~~~~~~nla~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  135 (162)
T 3rkv_A           62 NIPLYANMSQCYL---NIGDLHEAEETSSEVLKR--EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA  135 (162)
T ss_dssp             HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhc--CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4578999999999   677889999999999986  34 4569999999999999999999999999999999999 555


Q ss_pred             HHHHHHHhHh
Q 031176          125 GLKKTVEDRI  134 (164)
Q Consensus       125 ~L~~~Ie~~~  134 (164)
                      .....+..++
T Consensus       136 ~~l~~~~~~~  145 (162)
T 3rkv_A          136 REMKIVTERR  145 (162)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=7.2e-08  Score=67.49  Aligned_cols=80  Identities=10%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+.+++|.++.   ..++..+|+..++..+..  +| ...+++|.+|..++++|+|++|+.+++++++++|++..+...
T Consensus        65 ~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  138 (148)
T 2dba_A           65 AVLHRNRAACHL---KLEDYDKAETEASKAIEK--DG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA  138 (148)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHH---HHccHHHHHHHHHHHHhh--Cc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            788889999988   567788999999998885  34 346899999999999999999999999999999999998887


Q ss_pred             HHHHHh
Q 031176          127 KKTVED  132 (164)
Q Consensus       127 ~~~Ie~  132 (164)
                      ...+..
T Consensus       139 l~~~~~  144 (148)
T 2dba_A          139 LRNISG  144 (148)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            776654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.79  E-value=3.8e-08  Score=72.34  Aligned_cols=80  Identities=13%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH-HHHHHHhhCCCcHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ-ILEQCLEIAPDWRQA  123 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~-~~~~lL~~eP~n~Qa  123 (164)
                      .++++.++++.++.   ..++..+|+..++..+..  +| +..++++.||..+.++|+|++|.+ +++++++++|+|+.+
T Consensus        63 ~~~~a~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           63 RDPKAHRFLGLLYE---LEENTDKAVECYRRSVEL--NP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHH---HcCchHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            34445555555544   233444455555444443  22 223455555555555555544332 234555555555554


Q ss_pred             HHHHHHH
Q 031176          124 LGLKKTV  130 (164)
Q Consensus       124 ~~L~~~I  130 (164)
                      ..|+..|
T Consensus       137 ~~l~~~l  143 (150)
T 4ga2_A          137 YKLKEQL  143 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=1.6e-07  Score=64.38  Aligned_cols=85  Identities=9%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+..+.+++|.++.   ..++..+|+..++..+..  +| ...++++.+|..++++|+|++|+++++++++++|++
T Consensus        44 ~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           44 KRNPKDAKLYSNRAACYT---KLLEFQLALKDCEECIQL--EP-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             TTCTTCHHHHHHHHHHHT---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HcCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            334456788888888887   667788899999988875  34 345889999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q 031176          121 RQALGLKKTVE  131 (164)
Q Consensus       121 ~Qa~~L~~~Ie  131 (164)
                      ..+......+.
T Consensus       118 ~~~~~~l~~~~  128 (133)
T 2lni_A          118 KEAADGYQRCM  128 (133)
T ss_dssp             THHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            77665554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.75  E-value=7.9e-08  Score=70.63  Aligned_cols=101  Identities=10%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176           26 DRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        26 ~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      +..++.+.-..|.+. ..++..+...|++|.+..   +.++..+|++.++..+..  +| +..++++.||..|.++|+|+
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY---EAKEYDLAKKYICTYINV--QE-RDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCchH
Confidence            345666666666666 445557788899999999   677899999999999986  35 45699999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176          105 KSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +|+.+++++|+++|+|..+..-.-.+-.
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999987665554433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.74  E-value=9.8e-08  Score=66.89  Aligned_cols=89  Identities=21%  Similarity=0.277  Sum_probs=75.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS----PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~----~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +++-.|.++..+.   +.++..+|+.-++..+....    .+....+++++||.+++++|+|++|+.+.+.+|+++|++.
T Consensus         4 sa~dc~~lG~~~~---~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAY---TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHH---HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            6778899999999   88899999999999777421    1245779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhhh
Q 031176          122 QALGLKKTVEDRIAKD  137 (164)
Q Consensus       122 Qa~~L~~~Ie~~~~~d  137 (164)
                      .+..-+..++..+.++
T Consensus        81 ~~~~n~~~~~~~~~~~   96 (104)
T 2v5f_A           81 RANGNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhc
Confidence            9977666777765544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.74  E-value=2.8e-07  Score=62.35  Aligned_cols=94  Identities=11%  Similarity=0.049  Sum_probs=72.6

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ...+.+..+.+.+|+++.   ..++..+|++.++..+..  +| ...++++.+|..++++|+|++|..++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           32 VHFYGKAIELNPANAVYFCNRAAAYS---KLGNYAGAVQDCERAICI--DP-AYSKAYGRMGLALSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHH---HhhchHHHHHHHHHHHhc--Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3344444 334456888999999998   456788999999998885  34 3458999999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHhH
Q 031176          113 CLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      ++++.|++..+......+..+
T Consensus       106 ~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A          106 ALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHhcCccchHHHHHHHHHHHH
Confidence            999999998776655554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=4.4e-07  Score=60.89  Aligned_cols=91  Identities=22%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ...+.+..+.+.++.++.   ..++..+|+..++..+..  +| ...+.++.+|..+++.|+|++|+.++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           29 IEYYQKALELDPNNAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3444444 334456788899999988   456788899999988875  23 3458899999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHH
Q 031176          113 CLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++..|++.++......+
T Consensus       103 ~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A          103 ALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             HHHHCTTCHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHH
Confidence            999999998876654443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.70  E-value=7e-08  Score=71.06  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=56.8

Q ss_pred             cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .++.+.++.+.++.++.   ..++..+|++.++..+..  +| ...++++++|..|.++|+|++|+++++++|+++|+|.
T Consensus       102 ~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~~l~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          102 LNTVYADAYYKLGLVYD---SMGEHDKAIEAYEKTISI--KP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             hCccchHHHHHHHHHHH---HhCCchhHHHHHHHHHHh--cc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            34556777888888887   556677888888887775  34 3457888888888888888888888888888888775


Q ss_pred             H
Q 031176          122 Q  122 (164)
Q Consensus       122 Q  122 (164)
                      +
T Consensus       176 ~  176 (184)
T 3vtx_A          176 K  176 (184)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.69  E-value=1.5e-07  Score=65.77  Aligned_cols=94  Identities=9%  Similarity=0.079  Sum_probs=65.5

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ..++.+..+.+++|.++.   ..++..+|+..++..+..  +| ...+++|.+|..++++|+|++|+.++++
T Consensus        29 ~~~~~~al~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           29 AACYGRAITRNPLVAVYYTNRALCYL---KMQQPEQALADCRRALEL--DG-QSVKAHFFLGQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCcHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3344444 344556778888888888   556677888888887775  23 3457888888888888888888888888


Q ss_pred             HHhhCCC-----cHHHHHHHHHHHhH
Q 031176          113 CLEIAPD-----WRQALGLKKTVEDR  133 (164)
Q Consensus       113 lL~~eP~-----n~Qa~~L~~~Ie~~  133 (164)
                      ++++.|+     +.........++.+
T Consensus       103 a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B          103 AYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            8888887     55555555444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.69  E-value=1.8e-07  Score=60.88  Aligned_cols=78  Identities=23%  Similarity=0.377  Sum_probs=66.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +....+++|..+.   ..++..+|+..++..+..  +| ...+.++.+|..+++.|+|++|+.+++++++++|++.++..
T Consensus         8 ~~~~~~~la~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHH---HccCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4678888999988   567888999999998885  34 44689999999999999999999999999999999988765


Q ss_pred             HHHH
Q 031176          126 LKKT  129 (164)
Q Consensus       126 L~~~  129 (164)
                      ....
T Consensus        82 ~l~~   85 (91)
T 1na3_A           82 NLGN   85 (91)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.68  E-value=3.3e-07  Score=68.99  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      .+.+++|.++.   ..++..+|+..++..+..  +| ...+++|.+|.+|+++|+|++|+.+++++++++|++..+....
T Consensus        89 ~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A           89 SCNLNLATCYN---KNKDYPKAIDHASKVLKI--DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            78899999998   567889999999998886  34 4469999999999999999999999999999999999998887


Q ss_pred             HHHHhHhh
Q 031176          128 KTVEDRIA  135 (164)
Q Consensus       128 ~~Ie~~~~  135 (164)
                      ..+...+.
T Consensus       163 ~~~~~~~~  170 (198)
T 2fbn_A          163 ELCVNKLK  170 (198)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.67  E-value=2.4e-07  Score=62.16  Aligned_cols=69  Identities=16%  Similarity=0.165  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +.+..++.+..+.   ..++..+|++.++..+..  +| ...+.++++|.+++++|+|++|+.+++++|+++|++
T Consensus         3 ~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLF---KQGLYREAVHCYDQLITA--QP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4678889999999   778899999999999986  34 446999999999999999999999999999999998

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.66  E-value=3.7e-08  Score=67.70  Aligned_cols=76  Identities=17%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++.++.+.|++|.++.   ..++..+|+..++..+..  +| ...+.+++||.+|.++|+|++|+.++++++++.|.+..
T Consensus         3 ~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHL---KHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             --CCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CccCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            4557889999999999   677889999999999986  34 44589999999999999999999999999999876544


Q ss_pred             HH
Q 031176          123 AL  124 (164)
Q Consensus       123 a~  124 (164)
                      ..
T Consensus        77 ~~   78 (100)
T 3ma5_A           77 QK   78 (100)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.66  E-value=2.6e-07  Score=67.91  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHH-HHhcCChhHH--HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWA-LVHSRQAEDV--QRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~a-Li~S~~~~d~--~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ...|.+. ..++.++...+++|.+ ...   .++.  .+|+..++..+..  +| ...++++.+|..|+++|+|++|+.+
T Consensus        64 ~~~~~~al~~~p~~~~~~~~la~~l~~~---~~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~  137 (177)
T 2e2e_A           64 LLAYRQALQLRGENAELYAALATVLYYQ---ASQHMTAQTRAMIDKALAL--DS-NEITALMLLASDAFMQANYAQAIEL  137 (177)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHH---TTTCCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcccHHHHHHH
Confidence            3334444 3344567788888888 442   2344  7888888888875  34 4458888999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          110 LEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      +++++++.|++.....+...|+.....
T Consensus       138 ~~~al~~~p~~~~~~~~~~~i~~~~~~  164 (177)
T 2e2e_A          138 WQKVMDLNSPRINRTQLVESINMAKLL  164 (177)
T ss_dssp             HHHHHHTCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHHh
Confidence            999999999988887777777765443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.65  E-value=1.3e-07  Score=67.38  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=31.9

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +.+.++.+.++.++.   ..++..+|+..++..+..  +| +..+.++.||..+.++|+|++|+.+++++|+++|++
T Consensus        48 P~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l--~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           48 PEREEAWRSLGLTQA---ENEKDGLAIIALNHARML--DP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            334455555555555   333444555555554443  22 223455555555555555555555555555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.65  E-value=9.6e-08  Score=71.75  Aligned_cols=81  Identities=5%  Similarity=0.047  Sum_probs=69.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +.+.++.|++|+++.   +.++..+|+..++..+..  +| ...++|+.||.++.++|+|++|+.+++++++++|+|..+
T Consensus        33 p~~~~~~~~lg~~~~---~~g~~~eA~~~~~~al~~--~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFY---NKGRIEEAEVFFRFLCIY--DF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence            446789999999999   678899999999999986  45 456999999999999999999999999999999999876


Q ss_pred             HHHHHHH
Q 031176          124 LGLKKTV  130 (164)
Q Consensus       124 ~~L~~~I  130 (164)
                      .--.-.+
T Consensus       107 ~~~lg~~  113 (151)
T 3gyz_A          107 VFHTGQC  113 (151)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.65  E-value=1.3e-07  Score=65.29  Aligned_cols=83  Identities=17%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176           36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL  114 (164)
Q Consensus        36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL  114 (164)
                      .|.+. ..++.++...+++|.++.   ..++..+|+..++..+..  +| ...+.+|+||..|.++|+|++|+.++++++
T Consensus         7 ~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            7 RLEAMLAQGTDNMLLRFTLGKTYA---EHEQFDAALPHLRAALDF--DP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHTTTCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHH---HccCHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44554 445667899999999999   567888999999999986  34 446899999999999999999999999999


Q ss_pred             hhCCCcHHHH
Q 031176          115 EIAPDWRQAL  124 (164)
Q Consensus       115 ~~eP~n~Qa~  124 (164)
                      ++.|++....
T Consensus        81 ~~~~~~~~~~   90 (115)
T 2kat_A           81 AAAQSRGDQQ   90 (115)
T ss_dssp             HHHHHHTCHH
T ss_pred             HhccccccHH
Confidence            9999765443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=4.8e-07  Score=61.37  Aligned_cols=97  Identities=10%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc------hHHHHHHHHHHHHhhcchH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ------QREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~------~rd~lY~LAlg~~kl~~Y~  104 (164)
                      .+...|.+. ..++.+..+.+++|.++.   ..++..+|+..++..+..  .|..      ..+++|.+|..|+++|+|+
T Consensus        22 ~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~   96 (131)
T 1elr_A           22 TALKHYDKAKELDPTNMTYITNQAAVYF---EKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYK   96 (131)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHH---HhccHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            344445554 345557889999999998   567888999999998875  1211      1689999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          105 KSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      +|+.+++.++++.| +.........+...+
T Consensus        97 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           97 DAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 566555555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.61  E-value=1.8e-07  Score=67.29  Aligned_cols=82  Identities=11%  Similarity=-0.018  Sum_probs=69.7

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++.+.+..+++|..+.   ..++..+|+..++.++..  +| ...++|+.||..++++|+|++|+.+++++++++|+|..
T Consensus        14 ~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQY---QAGKWDDAQKIFQALCML--DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             CHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             CHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            4446788999999999   667889999999999986  34 45699999999999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 031176          123 ALGLKKTV  130 (164)
Q Consensus       123 a~~L~~~I  130 (164)
                      +.-..-.+
T Consensus        88 ~~~~lg~~   95 (142)
T 2xcb_A           88 FPFHAAEC   95 (142)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76544433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.60  E-value=9.9e-07  Score=62.71  Aligned_cols=92  Identities=11%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|.+. ..++.+..+.+++|.++.   ..++..+|++.++..+..  +| ...++++.+|..+.++|+|++|+.+++
T Consensus        32 A~~~~~~al~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~  105 (166)
T 1a17_A           32 AIKFYSQAIELNPSNAIYYGNRSLAYL---RTECYGYALGDATRAIEL--DK-KYIKGYYRRAASNMALGKFRAALRDYE  105 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34444444 345557889999999998   567889999999998886  34 445899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++++.|++..+.......
T Consensus       106 ~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A          106 TVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHH
Confidence            9999999999877554444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.60  E-value=3.6e-07  Score=61.05  Aligned_cols=69  Identities=20%  Similarity=0.428  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQRE-KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd-~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .|+.|..+.   ..++..+|++.++..+..  +|.. .+ .++.+|..|+++|+|++|+.+++++|+++|++..+.
T Consensus         3 ~~~~a~~~~---~~~~~~~A~~~~~~al~~--~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELI---NQGDIENALQALEEFLQT--EPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHH---HHTCHHHHHHHHHHHHHH--CSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHH---HcCCHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            467788888   667889999999999986  3544 46 999999999999999999999999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.60  E-value=3.4e-07  Score=63.79  Aligned_cols=81  Identities=12%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +.+..++.+..+.   ..++..+|++.++..+..  +| ...++++++|.+|+++|+|++|+.+++++++++|++..+.-
T Consensus         3 ~a~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            3 KAEEARLEGKEYF---TKSDWPNAVKAYTEMIKR--AP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4677889999999   677899999999999986  34 44599999999999999999999999999999999987765


Q ss_pred             HHHHHHh
Q 031176          126 LKKTVED  132 (164)
Q Consensus       126 L~~~Ie~  132 (164)
                      ..-.+-.
T Consensus        77 ~lg~~~~   83 (126)
T 3upv_A           77 RKATAQI   83 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.59  E-value=2.5e-07  Score=68.06  Aligned_cols=86  Identities=9%  Similarity=-0.027  Sum_probs=71.4

Q ss_pred             HHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176           37 VAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE  115 (164)
Q Consensus        37 y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~  115 (164)
                      |.+. ..++.+.++.+++|..+.   ..++..+|+..++..+..  +| ...++|+.+|.++.++|+|++|+.+++++++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQY---QSGXYEDAHXVFQALCVL--DH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHH---HcCChHHHHHHHHHHHHc--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3444 334557788999999999   677889999999999886  34 4569999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHH
Q 031176          116 IAPDWRQALGLKK  128 (164)
Q Consensus       116 ~eP~n~Qa~~L~~  128 (164)
                      ++|+|..+.-..-
T Consensus        84 l~p~~~~~~~~lg   96 (148)
T 2vgx_A           84 MDIXEPRFPFHAA   96 (148)
T ss_dssp             HSTTCTHHHHHHH
T ss_pred             cCCCCchHHHHHH
Confidence            9999987755443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.57  E-value=4.2e-07  Score=77.11  Aligned_cols=85  Identities=20%  Similarity=0.249  Sum_probs=73.3

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ....+.+++|+++.   ..++..+|++.++..+..  +| ...+++|.+|.+|+++|+|++|+.+++++|+++|+|..+.
T Consensus       271 ~~~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~  344 (370)
T 1ihg_A          271 VALSCVLNIGACKL---KMSDWQGAVDSCLEALEI--DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ  344 (370)
T ss_dssp             HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTT--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHH---hccCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            35678899999999   567788999999999985  34 4569999999999999999999999999999999999988


Q ss_pred             HHHHHHHhHhh
Q 031176          125 GLKKTVEDRIA  135 (164)
Q Consensus       125 ~L~~~Ie~~~~  135 (164)
                      .....+...+.
T Consensus       345 ~~l~~~~~~~~  355 (370)
T 1ihg_A          345 AELLKVKQKIK  355 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            87777766543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.57  E-value=3.5e-07  Score=65.64  Aligned_cols=82  Identities=7%  Similarity=0.067  Sum_probs=69.2

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ...+..++.+..+.   +.++..+|++.++..+..  +| ...++++++|.+|+++|+|++|+.+++++|+++|++..+.
T Consensus        11 ~~a~~~~~~G~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           11 ELAQEEKNKGNEYF---KKGDYPTAMRHYNEAVKR--DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            35677788898998   678899999999999986  35 4569999999999999999999999999999999998876


Q ss_pred             HHHHHHHh
Q 031176          125 GLKKTVED  132 (164)
Q Consensus       125 ~L~~~Ie~  132 (164)
                      -.+-.+-.
T Consensus        85 ~~lg~~~~   92 (126)
T 4gco_A           85 IRKAACLV   92 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.55  E-value=4.8e-07  Score=66.10  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ....+..++.+..+.   ..++..+|++.++..+..  +| ...++++.+|..|+++|+|++|+.+++++|+++|+|..+
T Consensus         8 ~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A            8 TPESDKLKSEGNAAM---ARKEYSKAIDLYTQALSI--AP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            345778889999999   677899999999999986  34 446999999999999999999999999999999999877


Q ss_pred             HHHHHHHHhH
Q 031176          124 LGLKKTVEDR  133 (164)
Q Consensus       124 ~~L~~~Ie~~  133 (164)
                      ....-.+-..
T Consensus        82 ~~~lg~~~~~   91 (164)
T 3sz7_A           82 WSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6655555433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.55  E-value=5.4e-07  Score=69.08  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             HHHHHHHH-hcCCCchHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMR----------------LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV   95 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~----------------yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl   95 (164)
                      +...|.+. ..++.++++.|.                +|.++.   ..++..+|+..++..+..  +| +..++++.||.
T Consensus        23 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~   96 (208)
T 3urz_A           23 AVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK---KNRNYDKAYLFYKELLQK--AP-NNVDCLEACAE   96 (208)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHH
Confidence            33344444 334445667777                899998   677889999999999986  34 45699999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176           96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus        96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      .++++|+|++|+.+++++|+++|+|..+....-
T Consensus        97 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999999999998765443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.55  E-value=6.9e-07  Score=62.25  Aligned_cols=84  Identities=10%  Similarity=0.018  Sum_probs=71.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +.+++..+++|..+.   ..++..+|+..++..+..  +| ...++++.+|..++++|+|++|+.+++++++++|++..+
T Consensus         6 ~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   79 (137)
T 3q49_B            6 SPSAQELKEQGNRLF---VGRKYPEAAACYGRAITR--NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   79 (137)
T ss_dssp             CCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccHHHHHHHHHHHH---HhCcHHHHHHHHHHHHhh--Cc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence            457889999999999   677889999999999886  34 446999999999999999999999999999999999887


Q ss_pred             HHHHHHHHhH
Q 031176          124 LGLKKTVEDR  133 (164)
Q Consensus       124 ~~L~~~Ie~~  133 (164)
                      ....-.+-..
T Consensus        80 ~~~l~~~~~~   89 (137)
T 3q49_B           80 HFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6665555433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.54  E-value=9.4e-07  Score=73.30  Aligned_cols=83  Identities=13%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+.+++|.++.   ..++..+|+..++..+..  +| ....++|.+|.+|+++|+|++|+.+++++|+++|+|..+...
T Consensus       196 ~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  269 (336)
T 1p5q_A          196 LASHLNLAMCHL---KLQAFSAAIESCNKALEL--DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ  269 (336)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            589999999999   667889999999999986  34 456999999999999999999999999999999999988877


Q ss_pred             HHHHHhHhh
Q 031176          127 KKTVEDRIA  135 (164)
Q Consensus       127 ~~~Ie~~~~  135 (164)
                      ...+...+.
T Consensus       270 l~~~~~~~~  278 (336)
T 1p5q_A          270 LAVCQQRIR  278 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766655443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.53  E-value=6.7e-07  Score=63.56  Aligned_cols=76  Identities=12%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      ...|+.|..++   ..++..+|+..++..+..  +| ...+.||.||..+.++|+|++|+.+++++++++|++.++....
T Consensus        18 ~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l   91 (121)
T 1hxi_A           18 ENPMEEGLSML---KLANLAEAALAFEAVCQK--EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   91 (121)
T ss_dssp             SCHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45789999999   567889999999999986  34 4569999999999999999999999999999999998876544


Q ss_pred             HH
Q 031176          128 KT  129 (164)
Q Consensus       128 ~~  129 (164)
                      -.
T Consensus        92 a~   93 (121)
T 1hxi_A           92 AV   93 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.53  E-value=1.4e-06  Score=67.90  Aligned_cols=77  Identities=14%  Similarity=0.092  Sum_probs=63.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh----------cchHHHHHHHHHHHhhCCCc
Q 031176           51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT----------GEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl----------~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      |++|+++.   ..++..+|+..++.++....+.....+++|+++.+|+++          |+|++|+.+++.+++..|++
T Consensus       152 ~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          152 YEAARLYE---RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHH---HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            99999999   677899999999999986322233668999999999988          99999999999999999999


Q ss_pred             HHHHHHHHHH
Q 031176          121 RQALGLKKTV  130 (164)
Q Consensus       121 ~Qa~~L~~~I  130 (164)
                      ..+......+
T Consensus       229 ~~~~~a~~~l  238 (261)
T 3qky_A          229 PLLRTAEELY  238 (261)
T ss_dssp             THHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            6554444333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.52  E-value=1.4e-06  Score=67.17  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=74.4

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh---------
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT---------  100 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl---------  100 (164)
                      ......|.+. ..++.++++.+++|.++.   ..++..+|+..++..+..  +| +..++++.|+..+.++         
T Consensus        22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~~~~~~~~~~   95 (217)
T 2pl2_A           22 DAALTLFERALKENPQDPEALYWLARTQL---KLGLVNPALENGKTLVAR--TP-RYLGGYMVLSEAYVALYRQAEDRER   95 (217)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHhhhhhhhhcc
Confidence            3445566666 556678899999999998   566788899999998885  34 4458999999999999         


Q ss_pred             --cchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176          101 --GEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       101 --~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                        |+|++|+.+++++++++|++..+....-.+
T Consensus        96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~  127 (217)
T 2pl2_A           96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLV  127 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence              999999999999999999988766544433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=8.1e-07  Score=61.27  Aligned_cols=72  Identities=11%  Similarity=0.207  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ++..|+.|..+.   ..++..+|+..++.++....+.....+.+|++|..++++|+|++|+.+++.+++..|++.
T Consensus         2 ~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A            2 ARTAYNVAFDAL---KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             -CCHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             cHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            356789999999   667889999999999885222222238999999999999999999999999999999993

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.50  E-value=1.3e-06  Score=66.37  Aligned_cols=81  Identities=16%  Similarity=0.286  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcch----------------------
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEY----------------------  103 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y----------------------  103 (164)
                      .+.++++.++.   ..++..+|++.++..+..  +| .  ..+.++.|+..|+++|+.                      
T Consensus       118 ~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  191 (228)
T 4i17_A          118 IYYLKEGQKFQ---QAGNIEKAEENYKHATDV--TS-KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAK  191 (228)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHTTS--SC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHH
T ss_pred             HHHHHHhHHHH---HhccHHHHHHHHHHHHhc--CC-CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            56888888888   668899999999999986  34 5  569999999999999999                      


Q ss_pred             -----HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          104 -----AKSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       104 -----~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                           ++|+.+++++++++|+|..+..+...|...+
T Consensus       192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence                 9999999999999999999999998887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.50  E-value=1.5e-06  Score=67.04  Aligned_cols=93  Identities=15%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      ........|.+. ..++.++++.+++++++.   ..++..+|+..++..+..+    +..++++.||..+.++|+|++|+
T Consensus        99 ~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~  171 (217)
T 2pl2_A           99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYA---LLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEAL  171 (217)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHH
Confidence            344455555555 446668899999999999   6678889999999999872    45699999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      .+++++|+++|+|.++....-
T Consensus       172 ~~~~~al~~~P~~~~~~~~la  192 (217)
T 2pl2_A          172 AQYAKALEQAPKDLDLRVRYA  192 (217)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHH
Confidence            999999999999998765443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=1.7e-06  Score=60.34  Aligned_cols=83  Identities=14%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ++.+....+..|..+.   ..++..++++.++..+..  +|..  ..++++.+|..|+++++|++|+.++++++++.|++
T Consensus        24 ~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           24 GASSVEQLRKEGNELF---KCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             TCCCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             chHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            3457888999999999   788899999999999986  3432  37999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 031176          121 RQALGLKKTV  130 (164)
Q Consensus       121 ~Qa~~L~~~I  130 (164)
                      .++....-.+
T Consensus        99 ~~~~~~~a~~  108 (148)
T 2dba_A           99 VKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8766544444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.49  E-value=7e-07  Score=77.29  Aligned_cols=83  Identities=12%  Similarity=0.209  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+.+++|+++.   ..++..+|+..++..+..  +| +...++|.+|.+|+++++|++|+.+++++|+++|+|..+...
T Consensus       317 ~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  390 (457)
T 1kt0_A          317 LAAFLNLAMCYL---KLREYTKAVECCDKALGL--DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ  390 (457)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred             HHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            588999999999   667889999999999986  34 456999999999999999999999999999999999988887


Q ss_pred             HHHHHhHhh
Q 031176          127 KKTVEDRIA  135 (164)
Q Consensus       127 ~~~Ie~~~~  135 (164)
                      ...+..++.
T Consensus       391 l~~~~~~~~  399 (457)
T 1kt0_A          391 ISMCQKKAK  399 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777765544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.49  E-value=1.2e-06  Score=57.88  Aligned_cols=73  Identities=10%  Similarity=-0.035  Sum_probs=49.3

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhh-cchHHHHHHHHHHHhhCCCc
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRT-GEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl-~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ++.+..+.+++|.++.   ..++..+|++.++..+..  +|. ...++++.+|..+.++ |+|++|+++++.+++..|++
T Consensus        36 ~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           36 DPEESKYWLMKGKALY---NLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CcCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            4445667777777777   445566777777777764  232 0347777777777777 77777777777777777765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.48  E-value=8.7e-07  Score=58.62  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC--cH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD--WR  121 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~--n~  121 (164)
                      +.+.+..+.+|..+.   ..++..+|+..++..+..  +| ...+.++.+|..++++|+|++|+.++++++++.|+  +.
T Consensus         3 p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            3 DQNPEEYYLEGVLQY---DAGNYTESIDLFEKAIQL--DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CSSTTGGGGHHHHHH---SSCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCcHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            345678888999998   667889999999998886  34 44689999999999999999999999999999999  88


Q ss_pred             HHHHHHHHHHhHh
Q 031176          122 QALGLKKTVEDRI  134 (164)
Q Consensus       122 Qa~~L~~~Ie~~~  134 (164)
                      ++....-.+....
T Consensus        77 ~~~~~l~~~~~~~   89 (112)
T 2kck_A           77 DVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555554333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.48  E-value=1.2e-06  Score=59.83  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=69.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      +.+..+.+++|..+.   ..++..+|++.++..+..  +| ...++++.+|..+.+.|+|++|++++++++++.|++.++
T Consensus        13 ~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           13 PDLALMVKNKGNECF---QKGDYPQAMKHYTEAIKR--NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             SCHHHHHHHHHHHHH---HTTCSHHHHHHHHHHHTT--CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            446889999999999   677889999999999885  34 446999999999999999999999999999999999877


Q ss_pred             HHHHHHHH
Q 031176          124 LGLKKTVE  131 (164)
Q Consensus       124 ~~L~~~Ie  131 (164)
                      ....-.+-
T Consensus        87 ~~~la~~~   94 (133)
T 2lni_A           87 YTRKAAAL   94 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.47  E-value=1.6e-06  Score=57.66  Aligned_cols=80  Identities=11%  Similarity=0.248  Sum_probs=67.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ..+..+..|..+.   ..++..+|+..++..+..  +| ...++++.+|..++++|+|++|..+++++++..|++.++..
T Consensus         3 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            3 QVNELKEKGNKAL---SVGNIDDALQCYSEAIKL--DP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHH---HcccHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            4678889999999   567889999999998885  34 44689999999999999999999999999999999987665


Q ss_pred             HHHHHH
Q 031176          126 LKKTVE  131 (164)
Q Consensus       126 L~~~Ie  131 (164)
                      ..-.+-
T Consensus        77 ~~a~~~   82 (118)
T 1elw_A           77 RKAAAL   82 (118)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.47  E-value=3.7e-07  Score=70.24  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=69.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc-----hHHHHHHHHHHHHhhcchHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ-----QREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~-----~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      ...|.+. ...+.+..+.+.++.++....+..+..+|+..++..+......+.     ..+++++||..|.+.|+|++|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3344444 445556788899999988665533355566666665543111111     2379999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          108 QILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      .+++++|+++|+|.+++.....+....
T Consensus       242 ~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHC------
T ss_pred             HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence            999999999999999998877765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.42  E-value=4.5e-06  Score=63.43  Aligned_cols=85  Identities=7%  Similarity=0.012  Sum_probs=69.3

Q ss_pred             HHHHHHHH-hcCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           33 CEREVAEA-NDDK-QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        33 ~e~~y~~~-~~~~-~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      +...|.+. ..++ ++..+.+++|.++.   ..++..+|++.++..+..  +| ...++++.+|..|+++|+|++|+.++
T Consensus        26 A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~   99 (228)
T 4i17_A           26 AFEKYSEYLKLTNNQDSVTAYNCGVCAD---NIKKYKEAADYFDIAIKK--NY-NLANAYIGKSAAYRDMKNNQEYIATL   99 (228)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--TC-SHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHH---HhhcHHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHcccHHHHHHHH
Confidence            33444444 3333 57788999999999   567888999999999985  34 56799999999999999999999999


Q ss_pred             HHHHhhCCCcHHH
Q 031176          111 EQCLEIAPDWRQA  123 (164)
Q Consensus       111 ~~lL~~eP~n~Qa  123 (164)
                      +++++++|+|...
T Consensus       100 ~~al~~~p~~~~~  112 (228)
T 4i17_A          100 TEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHSTTCHHH
T ss_pred             HHHHHHCCCcHHH
Confidence            9999999999843

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.41  E-value=3.4e-06  Score=65.73  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh--------hcchHHHHHHHHHHHhhCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR--------TGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k--------l~~Y~~A~~~~~~lL~~eP  118 (164)
                      +++.|.+|.++.   ..++..+|+..++.++....+.+...+.+|.+|.++++        +|+|++|+.+++++++..|
T Consensus        52 ~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           52 ADAQFYLARAYY---QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence            788999999999   66788899999999888532233556889999999999        9999999999999999999


Q ss_pred             CcHHHHHHH
Q 031176          119 DWRQALGLK  127 (164)
Q Consensus       119 ~n~Qa~~L~  127 (164)
                      ++..+....
T Consensus       129 ~~~~~~~a~  137 (261)
T 3qky_A          129 NHELVDDAT  137 (261)
T ss_dssp             TCTTHHHHH
T ss_pred             CchhHHHHH
Confidence            987666444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.41  E-value=4.1e-06  Score=65.86  Aligned_cols=83  Identities=17%  Similarity=0.106  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      ...+.+|+++.   ..++..+|++.++..+..  +| ...+.++.+|..+.++|+|++|+.+++++++++|+|.++....
T Consensus       273 ~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          273 RSKERICHCFS---KDEKPVEAIRICSEVLQM--EP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHH---HccCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            44667888888   567889999999999885  34 4458999999999999999999999999999999999998887


Q ss_pred             HHHHhHhhh
Q 031176          128 KTVEDRIAK  136 (164)
Q Consensus       128 ~~Ie~~~~~  136 (164)
                      ..+...+.+
T Consensus       347 ~~~~~~~~~  355 (359)
T 3ieg_A          347 EKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.40  E-value=3.8e-06  Score=56.44  Aligned_cols=92  Identities=22%  Similarity=0.305  Sum_probs=65.4

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+...|.+. ..++.+..+.+.++..+.   ..++..+++..++..+..  .| ...+.++.++..+++.|+|++|++++
T Consensus        19 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           19 EAIEYYQKALELDPRSAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-RSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcchhHHHHHHHHHH---HhcCHHHHHHHHHHHHHH--CC-CchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            344444444 334446777888888887   456778888888887775  23 33578888888888999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHH
Q 031176          111 EQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~  129 (164)
                      +++++..|++..+....-.
T Consensus        93 ~~~~~~~~~~~~~~~~la~  111 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGN  111 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHH
Confidence            9988888888765544433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.39  E-value=4.7e-06  Score=72.14  Aligned_cols=104  Identities=12%  Similarity=0.065  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhc-----CChhHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHh
Q 031176           28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHS-----RQAEDVQRGIAMLEASLANSSPPL--QQREKLYLLAVGYYR   99 (164)
Q Consensus        28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S-----~~~~d~~~gi~lLe~ll~~~~~~~--~~rd~lY~LAlg~~k   99 (164)
                      .....+...|.+. ..++.+..+.++++.++...     .+.++..+|++.++..+..  +|.  ...+.+++||..|++
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKY  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHH
Confidence            4555666666666 55666889999999999843     2348999999999999985  341  556999999999999


Q ss_pred             hcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176          100 TGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      +|+|++|+.+++++++++|+|..+......+...
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999876655554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.39  E-value=2.4e-06  Score=64.47  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=57.5

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...+.+. ..++....+.+++++.+.   ..++..+|+..++..+..  +| ...++++.+|..++++|+|++|+.+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          125 LKKAEAEAYVNPEKAEEARLEGKEYF---TKSDWPNAVKAYTEMIKR--AP-EDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3334433 334445667777777777   445666777777776664  23 2346777777777777777777777777


Q ss_pred             HHhhCCCcHHHHHHHHHH
Q 031176          113 CLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++.|++..+....-.+
T Consensus       199 al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          199 AIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHCTTCHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            777777776655444444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.37  E-value=1.8e-06  Score=64.88  Aligned_cols=75  Identities=13%  Similarity=0.173  Sum_probs=41.6

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .+..+.+.+|.++.   ..++..+|+..++..+..  .| ...++++.+|..+++.|+|++|+.+++++++..|++..+.
T Consensus       123 ~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  196 (243)
T 2q7f_A          123 ENGDLFYMLGTVLV---KLEQPKLALPYLQRAVEL--NE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF  196 (243)
T ss_dssp             CSHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            34555566666655   344555566666665553  12 2235566666666666666666666666666666655443


Q ss_pred             H
Q 031176          125 G  125 (164)
Q Consensus       125 ~  125 (164)
                      .
T Consensus       197 ~  197 (243)
T 2q7f_A          197 Y  197 (243)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.36  E-value=2.5e-06  Score=65.25  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=68.8

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHhhcchHHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYL----------------LAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~----------------LAlg~~kl~~Y~~A~~  108 (164)
                      ++.+..+..+..++   +.++..+|+..++..+..  +| +..+.+|+                +|..|.++|+|++|+.
T Consensus         2 ~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            2 QSVDEMLQKVSAAI---EAGQNGQAVSYFRQTIAL--NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             -CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            36788899999999   677899999999999986  34 55689999                9999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHH
Q 031176          109 ILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++++|+++|+|..+....-.+
T Consensus        76 ~~~~al~~~p~~~~~~~~lg~~   97 (208)
T 3urz_A           76 FYKELLQKAPNNVDCLEACAEM   97 (208)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999876555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.35  E-value=1e-05  Score=54.24  Aligned_cols=72  Identities=25%  Similarity=0.450  Sum_probs=49.6

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ++.+..+.++++..+.   ..++..+|+..++..+..  .| ...++++.+|..+++.|++++|+.+++.+++..|++
T Consensus        65 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           65 DPRSAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             CTTCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCchHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            3445666777777776   556677777777776664  22 334677777777777777777777777777777763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.34  E-value=4.1e-06  Score=59.73  Aligned_cols=94  Identities=7%  Similarity=-0.006  Sum_probs=70.6

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHhhcchHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS----PPLQQREKLYLLAVGYYRTGEYAK  105 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~----~~~~~rd~lY~LAlg~~kl~~Y~~  105 (164)
                      ..+...|.+. .-++....+.+++|.++.   ..++..+|++.++..+....    +....-.+++.++..+.++++|++
T Consensus        25 ~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~  101 (127)
T 4gcn_A           25 EKAHVHYDKAIELDPSNITFYNNKAAVYF---EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL  101 (127)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHhHHHHHH---HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHH
Confidence            4455556665 446667899999999999   66788899999988776410    011223588999999999999999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHH
Q 031176          106 SRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus       106 A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      |+++++++|+..|+..-...|+
T Consensus       102 A~~~~~kal~~~~~~~~~~~l~  123 (127)
T 4gcn_A          102 AVQWFHRSLSEFRDPELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHhhCcCHHHHHHHH
Confidence            9999999999999765555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.34  E-value=5.4e-06  Score=61.87  Aligned_cols=79  Identities=23%  Similarity=0.248  Sum_probs=63.8

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC-------------CchHHHHHHHHHHHHhhcchHHHH
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP-------------LQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~-------------~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      ..++....+.+++|.++.   ..++..+|++.++..+....+.             +...+++|++|..|+++|+|++|+
T Consensus        65 ~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           65 NRDKHLAVAYFQRGMLYY---QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCccchHHHHHHHHHHH---HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            345567889999999999   5677889999999988852111             123489999999999999999999


Q ss_pred             HHHHHHHhhCCCcHH
Q 031176          108 QILEQCLEIAPDWRQ  122 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Q  122 (164)
                      .++++++++.|++..
T Consensus       142 ~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          142 EQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHcCccccc
Confidence            999999999998754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.34  E-value=1.3e-06  Score=62.28  Aligned_cols=97  Identities=11%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ...+...+.+. ...+.+..+.+++|..+.   ..++..+|++.++..+..  .| ...+.++.+|..+++.|+|++|..
T Consensus        58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           58 VDRGTELLERSLADAPDNVKVATVLGLTYV---QVQKYDLAVPLLIKVAEA--NP-INFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--Cc-HhHHHHHHHHHHHHHcCcHHHHHH
Confidence            34444555555 445557788888898888   566778899999888875  23 345888999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHh
Q 031176          109 ILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +++.+++..|++..+....-.+-.
T Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A          132 SFKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccchHHHHHHHHHHH
Confidence            999999999998776655544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.34  E-value=4.7e-06  Score=72.77  Aligned_cols=96  Identities=10%  Similarity=0.030  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      +...+...|.+. ..++.+..+.+++|.++.   ..++..+|++.++..+..  +| ...+++|.+|.+|+++|+|++|+
T Consensus        21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l--~p-~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYL---RTECYGYALGDATRAIEL--DK-KYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHS--CT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            455666777777 456667999999999999   667889999999999986  34 44689999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++++|+++|++..+......+
T Consensus        95 ~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           95 RDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999887766555

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.33  E-value=3.1e-06  Score=65.25  Aligned_cols=74  Identities=14%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +++..|+.|..++   ..++..+|+..|+.++....+.+...+.+|.+|.+|+++|+|++|+.+++++++..|++..
T Consensus         3 ~~~~~~~~a~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            3 PPNEIYATAQQKL---QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            6788999999999   7789999999999999852222234689999999999999999999999999999999975

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.33  E-value=8.1e-07  Score=73.86  Aligned_cols=80  Identities=11%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      .+.+++|.++.   ..++..+|+..++..+..  +| ....+||.+|.+|+++|+|++|+.+++++|+++|+|..+....
T Consensus       231 ~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          231 PCHLNIAACLI---KLKRYDEAIGHCNIVLTE--EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHHHHHHHHHH---TTTCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            37889999999   677888999999999986  34 4569999999999999999999999999999999999988877


Q ss_pred             HHHHhH
Q 031176          128 KTVEDR  133 (164)
Q Consensus       128 ~~Ie~~  133 (164)
                      ..+..+
T Consensus       305 ~~l~~~  310 (338)
T 2if4_A          305 RALAEQ  310 (338)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            666443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.32  E-value=5e-06  Score=60.97  Aligned_cols=79  Identities=15%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ++...|+++.+..   ..++.++|++.++..+..  +| +..++++.||..|.++|+|++|+.+++.+++..|++..+..
T Consensus         4 ~~~iy~~lG~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A            4 TTTIYMDIGDKKR---TKGDFDGAIRAYKKVLKA--DP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence            5666777777766   566677777777777664  34 33477777777777777777777777777777777766655


Q ss_pred             HHHHH
Q 031176          126 LKKTV  130 (164)
Q Consensus       126 L~~~I  130 (164)
                      ..-.+
T Consensus        78 ~~~~~   82 (184)
T 3vtx_A           78 ILGSA   82 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.31  E-value=8.8e-06  Score=61.28  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.++.+.+++|.++.   ..++..+|+..++..+..  +| ...++++.+|..+.++|+|++|+.+++++
T Consensus       160 ~~~~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          160 KAYTEMIKRAPEDARGYSNRAAALA---KLMSFPEAIADCNKAIEK--DP-NFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334443 344557889999999998   566788999999998886  34 44689999999999999999999999999


Q ss_pred             HhhC------CCcHHHHHHHHH
Q 031176          114 LEIA------PDWRQALGLKKT  129 (164)
Q Consensus       114 L~~e------P~n~Qa~~L~~~  129 (164)
                      +++.      |+|..+..+...
T Consensus       234 ~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          234 RTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHhChhhcCCCchHHHHHHHHH
Confidence            9999      999887776553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.29  E-value=1e-05  Score=59.62  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=49.1

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQA-EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      +...|.+. ..++.+..+.++++.++.   .. ++..+|+..++..+.. ...+...+.++.+|..+.+.|+|++|+.++
T Consensus        61 A~~~~~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A           61 AQESFRQALSIKPDSAEINNNYGWFLC---GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHH---HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33334443 223345556666666666   44 5556666666665552 122334466666666666666666666666


Q ss_pred             HHHHhhCCCcHHHH
Q 031176          111 EQCLEIAPDWRQAL  124 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~  124 (164)
                      +.+++..|++..+.
T Consensus       137 ~~~~~~~~~~~~~~  150 (225)
T 2vq2_A          137 KRSLAAQPQFPPAF  150 (225)
T ss_dssp             HHHHHHSTTCHHHH
T ss_pred             HHHHHhCCCCchHH
Confidence            66666666665443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.28  E-value=4.5e-06  Score=56.25  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      .....+.+|..+.   ..++..+|++.++..+..  +| ...+.++.+|..+++.|+|++|+.+++.+++..|++..+..
T Consensus        11 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A           11 EAERLKTEGNEQM---KVENFEAAVHFYGKAIEL--NP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHH---HccCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            5677888888888   566888999999998885  34 34689999999999999999999999999999999987655


Q ss_pred             HHHHH
Q 031176          126 LKKTV  130 (164)
Q Consensus       126 L~~~I  130 (164)
                      ..-.+
T Consensus        85 ~~~~~   89 (131)
T 2vyi_A           85 RMGLA   89 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.28  E-value=1.8e-05  Score=56.21  Aligned_cols=94  Identities=20%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ...+.+..+.+.++.++.   ..++..+|++.++..+..  +| ...++++.+|..+.+.|+|++|+++
T Consensus        25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~   98 (186)
T 3as5_A           25 SQAVMLLEQVYDADAFDVDVALHLGIAYV---KTGAVDRGTELLERSLAD--AP-DNVKVATVLGLTYVQVQKYDLAVPL   98 (186)
T ss_dssp             HHHHHHHTTTCCTTSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3444455554 444557888899999998   566788999999998875  23 4468999999999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHH
Q 031176          110 LEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++++..|++..+....-.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~a~~  119 (186)
T 3as5_A           99 LIKVAEANPINFNVRFRLGVA  119 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhcCcHhHHHHHHHHHH
Confidence            999999999988765544433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.28  E-value=2.8e-05  Score=57.24  Aligned_cols=82  Identities=15%  Similarity=0.036  Sum_probs=62.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC-CcHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP-DWRQA  123 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP-~n~Qa  123 (164)
                      ....+.+++++++.   ..++..+|++.++..+..  .| ...++++.+|..+.+.|+|++|+.+++++++..| ++..+
T Consensus       111 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  184 (225)
T 2vq2_A          111 TPYIANLNKGICSA---KQGQFGLAEAYLKRSLAA--QP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD  184 (225)
T ss_dssp             CHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred             chHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence            34677888888888   566778888888888775  23 3458888888888888888888888888888888 88777


Q ss_pred             HHHHHHHHh
Q 031176          124 LGLKKTVED  132 (164)
Q Consensus       124 ~~L~~~Ie~  132 (164)
                      ..+...+..
T Consensus       185 ~~~~~~~~~  193 (225)
T 2vq2_A          185 LLLGWKIAK  193 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.27  E-value=8.5e-06  Score=66.16  Aligned_cols=59  Identities=14%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .+...+|+.++++++..  .| ...+.++.+|+++.++|+|++|..+++++|+++|+|..+.
T Consensus       179 ~~~~~eA~~~~~~~l~~--~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADK--CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             TTHHHHHHHHHHHHHHH--SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chHHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            35556666666665554  23 2335566666666666666666666666666666665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.27  E-value=1.3e-05  Score=61.31  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=56.9

Q ss_pred             cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .++....+.+++|.++.   ..++..+|++.++..+..  +| ...++++.+|..++++|+|++|+.++++++++.|++.
T Consensus        72 ~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           72 IRPDMPEVFNYLGIYLT---QAGNFDAAYEAFDSVLEL--DP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCCCcHHHHHHHHHHHH---HccCHHHHHHHHHHHHhc--Cc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            34456777888888877   456777888888887775  23 3357888888888888888888888888888888887


Q ss_pred             HH
Q 031176          122 QA  123 (164)
Q Consensus       122 Qa  123 (164)
                      .+
T Consensus       146 ~~  147 (275)
T 1xnf_A          146 FR  147 (275)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.27  E-value=2.1e-05  Score=60.56  Aligned_cols=81  Identities=9%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh------------------hcchHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR------------------TGEYAKSR  107 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k------------------l~~Y~~A~  107 (164)
                      ..++.|++|+++.   ..++..+|+..++.++....+.....+++|+++.++++                  .|++++|+
T Consensus        40 ~~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  116 (225)
T 2yhc_A           40 SQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF  116 (225)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence            4689999999999   66789999999999998632222334799999999997                  57999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      .+++++++..|++..+...+..
T Consensus       117 ~~~~~~l~~~P~~~~a~~a~~~  138 (225)
T 2yhc_A          117 SDFSKLVRGYPNSQYTTDATKR  138 (225)
T ss_dssp             HHHHHHHTTCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHCcCChhHHHHHHH
Confidence            9999999999999977654443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.27  E-value=1.4e-05  Score=61.28  Aligned_cols=77  Identities=5%  Similarity=-0.009  Sum_probs=41.0

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .+..+.+.+|.++.   ..++..+|++.++..+....++.....+++.+|..+.++|+|++|+.+++++++++|++..+.
T Consensus        35 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           35 NSPYIYNRRAVCYY---ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             CCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             CcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence            34455555555555   344455566666555553222222234455666666666666666666666666666555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.26  E-value=9.7e-06  Score=54.12  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +..+.+.++.++.   ..++..+|+++++..+..  .| ...+.++.+|..+++.|+|++|+.+++++++..|++..+..
T Consensus         8 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   81 (125)
T 1na0_A            8 SAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY   81 (125)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--Cc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            3678888999988   567888999999998885  23 44689999999999999999999999999999999986654


Q ss_pred             HH
Q 031176          126 LK  127 (164)
Q Consensus       126 L~  127 (164)
                      ..
T Consensus        82 ~l   83 (125)
T 1na0_A           82 NL   83 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.21  E-value=2.2e-05  Score=63.27  Aligned_cols=98  Identities=14%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           27 RDIIAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        27 ~~~l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      ......+...|.+. ..++.  .+.+.++++..+.   ..++..+|++.++..+..  +| ...++++.++..|.++|+|
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~  263 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH---LSGEFNRAIDAFNAALTV--RP-EDYSLWNRLGATLANGDRS  263 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCH
Confidence            44566666677776 33333  6889999999998   677889999999998886  34 4458999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++|+.++++++++.|++..+....-.+
T Consensus       264 ~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            999999999999999997665544333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.21  E-value=2.1e-06  Score=61.35  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ...+..+++..+.   ..++..+|++.++..+..  +| ...++++++|.+|+++|+|++|+.+++++|+++|++..
T Consensus         7 ~A~a~~~lG~~~~---~~~~~~~A~~~y~~Al~~--~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            7 AAIAEKDLGNAAY---KQKDFEKAHVHYDKAIEL--DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            3556678888888   677899999999999986  45 44599999999999999999999999999999998764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.20  E-value=3e-05  Score=58.90  Aligned_cols=89  Identities=10%  Similarity=0.066  Sum_probs=62.7

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.+..+.++++.++.   ..++..+|++.++..+.. ...+...+.++.+|..+++.|+|++|+.+++++
T Consensus        92 ~~~~~a~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  167 (252)
T 2ho1_A           92 EEYRKALASDSRNARVLNNYGGFLY---EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS  167 (252)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCcHHHHHHHHHHHH---HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334433 334456778888888887   456777888888887762 123455678888888888888888888888888


Q ss_pred             HhhCCCcHHHHHHH
Q 031176          114 LEIAPDWRQALGLK  127 (164)
Q Consensus       114 L~~eP~n~Qa~~L~  127 (164)
                      ++..|++..+....
T Consensus       168 ~~~~~~~~~~~~~l  181 (252)
T 2ho1_A          168 LRLNRNQPSVALEM  181 (252)
T ss_dssp             HHHCSCCHHHHHHH
T ss_pred             HhcCcccHHHHHHH
Confidence            88888876655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.20  E-value=1.7e-05  Score=60.24  Aligned_cols=97  Identities=18%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176           30 IAGCEREVAEA-N--DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS  106 (164)
Q Consensus        30 l~~~e~~y~~~-~--~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A  106 (164)
                      ...+.+.|.+. .  ..+....+.+++|.++.   ..++..+|++.++..+..  .| ...++++.+|..++++|+|++|
T Consensus       121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSL---QMKKPAQAKEYFEKSLRL--NR-NQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCccCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHcCCHHHH
Confidence            34445555555 3  33345667777777777   456677778888777764  23 3357778888888888888888


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176          107 RQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       107 ~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +.+++++++..|++..+..+...+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAK  220 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            88888888888877776655554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.20  E-value=7.5e-06  Score=59.92  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhhcch-
Q 031176           27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRTGEY-  103 (164)
Q Consensus        27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl~~Y-  103 (164)
                      ......+...|.+. ..++.+..+.+.+|.++.   ..++..+|+..++..+..  +| ...+.++.+|.. +++.|+| 
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYL---WQNDYSNSLLAYRQALQL--RG-ENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--HC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhcCCcc
Confidence            33444455555555 445567899999999999   567889999999998885  34 346899999999 8899999 


Q ss_pred             -HHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176          104 -AKSRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus       104 -~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                       ++|+.+++.+++.+|++..+....-.+-
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDA  125 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence             9999999999999999988766554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.19  E-value=1.2e-05  Score=74.45  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|++. .-++...++.++++.++.   ..++.++|++.++..+..  +| +.-+++++||..|.++|+|++|+.++++
T Consensus        63 ~~~~~~Al~l~P~~~~a~~nLg~~l~---~~g~~~~A~~~~~kAl~l--~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~  136 (723)
T 4gyw_A           63 LMHYKEAIRISPTFADAYSNMGNTLK---EMQDVQGALQCYTRAIQI--NP-AFADAHSNLASIHKDSGNIPEAIASYRT  136 (723)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344444 334445666666666666   445566666666666664  23 3346666666666666666666666666


Q ss_pred             HHhhCCCcHHHHH
Q 031176          113 CLEIAPDWRQALG  125 (164)
Q Consensus       113 lL~~eP~n~Qa~~  125 (164)
                      +|+++|++..+..
T Consensus       137 Al~l~P~~~~a~~  149 (723)
T 4gyw_A          137 ALKLKPDFPDAYC  149 (723)
T ss_dssp             HHHHCSCCHHHHH
T ss_pred             HHHhCCCChHHHh
Confidence            6666666665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.19  E-value=2.5e-05  Score=58.53  Aligned_cols=94  Identities=13%  Similarity=0.052  Sum_probs=69.1

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++....+.+.+|.++.   ..++..+|++.++..+..  .| ...+.++.+|..+.+.|+|++|+.+
T Consensus        74 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~  147 (243)
T 2q7f_A           74 ERALAFYDKALELDSSAATAYYGAGNVYV---VKEMYKEAKDMFEKALRA--GM-ENGDLFYMLGTVLVKLEQPKLALPY  147 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TC-CSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhccHHHHHHH
Confidence            3444455555 334556788888888888   566778888888888775  23 3457888899999999999999999


Q ss_pred             HHHHHhhCCCcHHHHHHHHHH
Q 031176          110 LEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++++..|++..+....-.+
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          148 LQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHH
Confidence            999999999887765544433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.19  E-value=1.5e-05  Score=56.44  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=66.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ..+..++.|..+.   ..++..+|+..++..+..  +| ...++++.+|..++++|+|++|+.++++++++.|++.++..
T Consensus        12 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   85 (166)
T 1a17_A           12 RAEELKTQANDYF---KAKDYENAIKFYSQAIEL--NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   85 (166)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            4577788888888   567889999999998886  34 44699999999999999999999999999999999987655


Q ss_pred             HHHHH
Q 031176          126 LKKTV  130 (164)
Q Consensus       126 L~~~I  130 (164)
                      ..-.+
T Consensus        86 ~~a~~   90 (166)
T 1a17_A           86 RRAAS   90 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.18  E-value=1.9e-05  Score=68.85  Aligned_cols=95  Identities=12%  Similarity=0.101  Sum_probs=69.5

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|++. ..++.+.++.+++|.++.   ..++..+|++.++..+..  +| +..++++.||..|.++|+|++|+++++
T Consensus        42 A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~  115 (568)
T 2vsy_A           42 GEMAVQRGLALHPGHPEAVARLGRVRW---TQQRHAEAAVLLQQASDA--AP-EHPGIALWLGHALEDAGQAEAAAAAYT  115 (568)
T ss_dssp             HHHHHHHHHTTSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444444 445557788888888888   556778888888888875  34 345888888888888888888888888


Q ss_pred             HHHhhCCCcHHHHHHHHHHHhH
Q 031176          112 QCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      ++++++|++..+....-.+...
T Consensus       116 ~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A          116 RAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHH
Confidence            8888888887766555444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.18  E-value=1.3e-05  Score=74.21  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ...+...|++. .-++...++.+++|.++.   +.++..+|++.++..++.  +| +.-+++++||..+.++|+|++|++
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~---~~g~~~eA~~~~~~Al~l--~P-~~~~a~~nLg~~l~~~g~~~~A~~   98 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQ---QQGKLQEALMHYKEAIRI--SP-TFADAYSNMGNTLKEMQDVQGALQ   98 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            34556667776 556668899999999999   677888999999999986  34 556999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHH
Q 031176          109 ILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++++|+++|++..+..-.-.+
T Consensus        99 ~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           99 CYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999998776554444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.18  E-value=2.4e-05  Score=63.66  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=53.5

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++.++++.++++.++.   ..++..+|++.++..+..  .| ...+.++.++..+.+.|+|++|+.+
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~  327 (388)
T 1w3b_A          254 DLAIDTYRRAIELQPHFPDAYCNLANALK---EKGSVAEAEDCYNTALRL--CP-THADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--Cc-ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3444445554 334445666666666666   445566666666666664  23 3346666677777777777777777


Q ss_pred             HHHHHhhCCCcHHHHH
Q 031176          110 LEQCLEIAPDWRQALG  125 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~  125 (164)
                      +++++++.|++..+..
T Consensus       328 ~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          328 YRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHTTSCTTCHHHHH
T ss_pred             HHHHHhcCCCcHHHHH
Confidence            7777776666654433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.17  E-value=1.1e-05  Score=70.30  Aligned_cols=96  Identities=17%  Similarity=0.064  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR  107 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~  107 (164)
                      +...+...|++. ..++.+.++.+++|.++.   ..++..+|++.++..+..  +| +..++++.||..|+++|+|++|+
T Consensus         4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQDFVAWLMLADAEL---GMGDTTAGEMAVQRGLAL--HP-GHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHTT--ST-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            344555566666 445567899999999999   677899999999999986  34 44699999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHH
Q 031176          108 QILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++++++++|++.++....-.+
T Consensus        78 ~~~~~al~~~p~~~~~~~~la~~  100 (568)
T 2vsy_A           78 VLLQQASDAAPEHPGIALWLGHA  100 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999999998766544433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.17  E-value=1.8e-05  Score=63.64  Aligned_cols=85  Identities=11%  Similarity=0.106  Sum_probs=70.7

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++.+....+++|.++.   ..++..+|+..++..+..  +| ....++|++|.+|.++|+|++|+.+
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~   94 (281)
T 2c2l_A           21 PEAAACYGRAITRNPLVAVYYTNRALCYL---KMQQPEQALADCRRALEL--DG-QSVKAHFFLGQCQLEMESYDEAIAN   94 (281)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTS--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3445555555 445668899999999999   567889999999998885  34 4459999999999999999999999


Q ss_pred             HHHHHhhCCCcH
Q 031176          110 LEQCLEIAPDWR  121 (164)
Q Consensus       110 ~~~lL~~eP~n~  121 (164)
                      ++++++++|++.
T Consensus        95 ~~~al~l~p~~~  106 (281)
T 2c2l_A           95 LQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHhCccch
Confidence            999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.16  E-value=1e-05  Score=58.80  Aligned_cols=84  Identities=12%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------CC---------CCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------SP---------PLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~~---------~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .....++.+..+.   ..++..+|+..++..+...      .+         .+....+++++|.+|+++|+|++|+.++
T Consensus        10 ~a~~~~~~G~~~~---~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A           10 SVEALRQKGNELF---VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4566778888888   5567777777777766530      01         1234589999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHh
Q 031176          111 EQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +++|+++|+|..+.-.+-.+-.
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~  108 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARI  108 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHH
Confidence            9999999999987665555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.15  E-value=1.8e-05  Score=60.50  Aligned_cols=99  Identities=11%  Similarity=0.082  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHH-hc----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh
Q 031176           25 CDRDIIAGCEREVAEA-ND----DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR   99 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~----~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k   99 (164)
                      ....+.......|.+. ..    ++....+.+.+|.++.   ..++..+|++.++..+..  +| ...++++.+|..+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD---SLGLRALARNDFSQALAI--RP-DMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHH
Confidence            3345666666677766 22    2235788889999998   667888999999999986  34 456899999999999


Q ss_pred             hcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176          100 TGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus       100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      .|+|++|+++++++++++|++..+....-.
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            999999999999999999998866544433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.15  E-value=3.5e-05  Score=63.37  Aligned_cols=82  Identities=17%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ....+++++++.   ..++..+|++.++..+..  +| ...+.++.+|.++.++|+|++|..+++++++++|++..+...
T Consensus       295 ~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  368 (450)
T 2y4t_A          295 VRSKERICHCFS---KDEKPVEAIRVCSEVLQM--EP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG  368 (450)
T ss_dssp             HHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence            457888899998   667889999999998875  34 445999999999999999999999999999999999998877


Q ss_pred             HHHHHhHh
Q 031176          127 KKTVEDRI  134 (164)
Q Consensus       127 ~~~Ie~~~  134 (164)
                      ...+....
T Consensus       369 l~~~~~~~  376 (450)
T 2y4t_A          369 LEKAQRLL  376 (450)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77665443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.15  E-value=4.7e-05  Score=59.26  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      ........+.+.|.+. ...+.+..+.+.+++.+.   ..++..+|++.++..+..  +| ...++++.+|..+.+.|+|
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN---LSNNYDSAAANLRRAVEL--RP-DDAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCH
Confidence            3444555666666666 445557899999999998   567788999999998886  34 4458999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ++|+.+++++++..|++..+....-.
T Consensus       223 ~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          223 QEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999998876554433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.14  E-value=2.3e-05  Score=63.60  Aligned_cols=93  Identities=11%  Similarity=0.002  Sum_probs=76.0

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH-HHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK-SRQI  109 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~-A~~~  109 (164)
                      .....|.+. ...+.++.+.+++|.++.   ..++..+|++.|+..+..  +| +.-+.++++++.+..+|++++ +.++
T Consensus       184 eA~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~eA~~~l~~al~~--~p-~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          184 DAYYIFQEMADKCSPTLLLLNGQAACHM---AQGRWEAAEGVLQEALDK--DS-GHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            344445544 446668899999999999   677889999999999986  35 445999999999999999986 6799


Q ss_pred             HHHHHhhCCCcHHHHHHHHHH
Q 031176          110 LEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++++++++|+|+.+..+.+.-
T Consensus       258 ~~~~~~~~P~~~~~~d~~~~~  278 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKEYRAKE  278 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHH
Confidence            999999999999998876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.13  E-value=2.4e-05  Score=61.42  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=74.2

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+...|.+. ..++.++++.+++|+++.   ..++..+|+..++..+..  +| ...++++.+|..+.+.|+|++|+.+
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~   93 (359)
T 3ieg_A           20 ADALSQFHAAVDGDPDNYIAYYRRATVFL---AMGKSKAALPDLTKVIAL--KM-DFTAARLQRGHLLLKQGKLDEAEDD   93 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CcchHHHHHHHHHHHcCChHHHHHH
Confidence            3444455555 445567899999999999   677889999999999885  34 4459999999999999999999999


Q ss_pred             HHHHHhhCC---CcHHHHHHH
Q 031176          110 LEQCLEIAP---DWRQALGLK  127 (164)
Q Consensus       110 ~~~lL~~eP---~n~Qa~~L~  127 (164)
                      +++++++.|   ++..+....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l  114 (359)
T 3ieg_A           94 FKKVLKSNPSEQEEKEAESQL  114 (359)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcccChHHHHHHH
Confidence            999999999   777776544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.11  E-value=5.6e-06  Score=57.44  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                      .++..+|+..++..+....+.+...++++.||..|+++|+|++|+.+++++++++|+|..+....-.+-
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   71 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL   71 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            456778999999988852113466799999999999999999999999999999999987766554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.10  E-value=4.7e-05  Score=60.75  Aligned_cols=95  Identities=11%  Similarity=0.077  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176           30 IAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS  106 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A  106 (164)
                      ...+...|.+. ..++.  ...+.++++.++.   ..++..+|+..++..+..  +| ...++++.+|..+.++|+|++|
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---LSGEYDKAVDCFTAALSV--RP-NDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHcCCHHHH
Confidence            33444445544 33333  6788999999998   567888999999998885  34 4458999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHH
Q 031176          107 RQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       107 ~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +.++++++++.|++..+....-.+
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~  294 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGIS  294 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999998765544433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.10  E-value=3.3e-05  Score=57.85  Aligned_cols=80  Identities=15%  Similarity=0.097  Sum_probs=65.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch---------------HHHHHHHHHHHHhhcchHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ---------------REKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~---------------rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      ..+..++.|..+.   ..++..+|+..++..+..  .|...               .++++.+|..|+++|+|++|+.++
T Consensus        37 ~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           37 SAFDIKEEGNEFF---KKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3566778888888   677889999999998874  23222               389999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHH
Q 031176          111 EQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++|+++|++..+.-..-.+
T Consensus       112 ~~al~~~p~~~~~~~~lg~~  131 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVA  131 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHH
Confidence            99999999998776554444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.10  E-value=1.1e-05  Score=54.44  Aligned_cols=69  Identities=16%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+.+|..+.   ..++..+|+..++..+..  +| ...++++.+|..+++.|+|++|..+++.+++..|++
T Consensus         3 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            3 QALKEKELGNDAY---KKKDFDTALKHYDKAKEL--DP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--CC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            4567788888888   567889999999998886  34 345899999999999999999999999999999876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.09  E-value=8.2e-06  Score=69.76  Aligned_cols=79  Identities=9%  Similarity=0.019  Sum_probs=45.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChh-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           43 DKQKSESIMRLSWALVHSRQAE-DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~-d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ++...++.++.+.++.   ..+ +..+|+..++..+..  +| ..-++||+++..+.++|+|++|+.+++++|+++|+|.
T Consensus       127 ~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l--~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEE--QP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             CTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             CccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence            3445566666666666   233 256666666666664  23 3345666666666666666666666666666666665


Q ss_pred             HHHHHH
Q 031176          122 QALGLK  127 (164)
Q Consensus       122 Qa~~L~  127 (164)
                      .+-.-+
T Consensus       201 ~a~~~l  206 (382)
T 2h6f_A          201 HAWQHR  206 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.09  E-value=1.3e-05  Score=61.89  Aligned_cols=84  Identities=15%  Similarity=0.157  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC-----CCCCCchHHHH----HHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN-----SSPPLQQREKL----YLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~-----~~~~~~~rd~l----Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      +..|.+.+|.   ..+...+|+..++..+..     .-+| +....|    |.+++++.++|+|++|+.+++++|+++|+
T Consensus        59 a~~n~g~al~---~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           59 CHAGLAEALA---GLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            8889999999   556677788777777762     0034 566899    99999999999999999999999999999


Q ss_pred             cH----HHHHHHHHHHhHhhh
Q 031176          120 WR----QALGLKKTVEDRIAK  136 (164)
Q Consensus       120 n~----Qa~~L~~~Ie~~~~~  136 (164)
                      +.    +-..+++.|+.+..+
T Consensus       135 d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A          135 RKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            85    666777777777655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.09  E-value=3.5e-05  Score=60.02  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=65.9

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.+..+.+++++++.   ..++..+|+..++..+..  +| ...++++.+|..+.++|+|++|+++++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          193 ANLRRAVELRPDDAQLWNKLGATLA---NGNRPQEALDAYNRALDI--NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            334433 345557889999999999   567888999999998886  34 45689999999999999999999999999


Q ss_pred             HhhCCC
Q 031176          114 LEIAPD  119 (164)
Q Consensus       114 L~~eP~  119 (164)
                      +++.|+
T Consensus       267 ~~~~~~  272 (327)
T 3cv0_A          267 IYMQVG  272 (327)
T ss_dssp             HHHHTT
T ss_pred             HHhCCc
Confidence            999999

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.08  E-value=5.1e-05  Score=59.14  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=44.5

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++....+.+.++.++.   ..++..+|++.++..+..  .| ...+.++++|..|.+.|+|++|+.+++++++..|++..
T Consensus       121 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  194 (330)
T 3hym_B          121 EKTYGPAWIAYGHSFA---VESEHDQAMAAYFTAAQL--MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF  194 (330)
T ss_dssp             CTTCTHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             CCccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence            3334556666666666   445556666666665554  12 23355666666666666666666666666666666654


Q ss_pred             HH
Q 031176          123 AL  124 (164)
Q Consensus       123 a~  124 (164)
                      +.
T Consensus       195 ~~  196 (330)
T 3hym_B          195 VM  196 (330)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.08  E-value=2.7e-05  Score=58.01  Aligned_cols=71  Identities=11%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +++.+.++++.++.   ..++..+|++.++..+..  +| ...++++.+|..|+++|+|++|+.+++++++..|+|.
T Consensus        35 ~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           35 PHSRICFNIGCMYT---ILKNMTEAEKAFTRSINR--DK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             CCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             CChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            37789999999999   667889999999998886  34 4469999999999999999999999999999999877

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.07  E-value=2.4e-05  Score=66.82  Aligned_cols=87  Identities=7%  Similarity=-0.033  Sum_probs=71.6

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+.++.+++++++.   ..++..+|+..++..+..  +| +.-++|++++.++.++|+|++|+.+++++|+++|+|
T Consensus       160 ~l~P~~~~a~~~~g~~~~---~~g~~~eAl~~~~kal~l--dP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVE---WLRDPSQELEFIADILNQ--DA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHH---HHTCCTTHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--Cc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            335557889999999998   556778899999998886  34 445899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhH
Q 031176          121 RQALGLKKTVEDR  133 (164)
Q Consensus       121 ~Qa~~L~~~Ie~~  133 (164)
                      ..+-.-+-.+-..
T Consensus       234 ~~a~~~lg~~l~~  246 (382)
T 2h6f_A          234 NSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9888777666555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.05  E-value=2.4e-05  Score=62.92  Aligned_cols=79  Identities=10%  Similarity=0.027  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +.+..++.|..+.   ..++..+|+..++..+..  +| ...++++++|..|+++|+|++|+.+++++++++|+|..+..
T Consensus         3 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLF---VGRKYPEAAACYGRAITR--NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5678889999998   667889999999999986  34 45699999999999999999999999999999999987765


Q ss_pred             HHHHH
Q 031176          126 LKKTV  130 (164)
Q Consensus       126 L~~~I  130 (164)
                      ..-.+
T Consensus        77 ~lg~~   81 (281)
T 2c2l_A           77 FLGQC   81 (281)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.03  E-value=0.0001  Score=60.62  Aligned_cols=81  Identities=9%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.+..+.+.++.++.   ..++..+|+..++..+..  +| ...++++.+|..|.++|+|++|+++++++
T Consensus        47 ~~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           47 SQFHAAVDGDPDNYIAYYRRATVFL---AMGKSKAALPDLTKVIQL--KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKV  120 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhc--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333333 334557888888888888   556788899999988885  34 44688999999999999999999999999


Q ss_pred             HhhCCCcH
Q 031176          114 LEIAPDWR  121 (164)
Q Consensus       114 L~~eP~n~  121 (164)
                      +++.|++.
T Consensus       121 ~~~~~~~~  128 (450)
T 2y4t_A          121 LKSNPSEN  128 (450)
T ss_dssp             HTSCCCHH
T ss_pred             HhcCCCCh
Confidence            99999887

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.02  E-value=3.3e-05  Score=63.90  Aligned_cols=80  Identities=8%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--------------HHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--------------REKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--------------rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      ...+.++++..+.   ..++..+|+..++..+..  .|...              ..++++||..|.++|+|++|+.+++
T Consensus       146 ~a~~~~~~g~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          146 QSTIVKERGTVYF---KEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5678889999998   678899999999998885  34332              5899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++|+++|+|..+.-.+-.+
T Consensus       221 ~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHH
Confidence            9999999998766544433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.02  E-value=5.1e-05  Score=61.76  Aligned_cols=90  Identities=12%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+...|.+. ..++.+..+.++++.++.   ..++..+|++.++..+..  +| ...+.++.++..+.+.|+|++|+.++
T Consensus       221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          221 RAVAAYLRALSLSPNHAVVHGNLACVYY---EQGLIDLAIDTYRRAIEL--QP-HFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--CS-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344455555 334556788888888888   566778888998888875  34 44588889999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHH
Q 031176          111 EQCLEIAPDWRQALGLK  127 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~  127 (164)
                      ++++++.|++..+....
T Consensus       295 ~~al~~~p~~~~~~~~l  311 (388)
T 1w3b_A          295 NTALRLCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHCTTCHHHHHHH
T ss_pred             HHHHhhCcccHHHHHHH
Confidence            99999999887665433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.02  E-value=5.4e-05  Score=62.84  Aligned_cols=83  Identities=13%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+.+++++++.+....++..+|++.++..+..  +| ...++++.+|..+.+.|+|++|+.++++++++.|++.++...
T Consensus       412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence            348899999998211178899999999998886  34 446899999999999999999999999999999999988877


Q ss_pred             HHHHHh
Q 031176          127 KKTVED  132 (164)
Q Consensus       127 ~~~Ie~  132 (164)
                      ....+.
T Consensus       489 ~~~~~~  494 (514)
T 2gw1_A          489 ITFAEA  494 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.00  E-value=4.9e-05  Score=60.61  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ..|.+. ..++.++.+.++++.++.   ..++..+|++.++..+..  +| ...++++.+|..|.++|+|++|+.+++++
T Consensus       238 ~~~~~al~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  311 (368)
T 1fch_A          238 DCFTAALSVRPNDYLLWNKLGATLA---NGNQSEEAVAAYRRALEL--QP-GYIRSRYNLGISCINLGAHREAVEHFLEA  311 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            333333 335557889999999999   567889999999998886  34 44599999999999999999999999999


Q ss_pred             HhhCCCc
Q 031176          114 LEIAPDW  120 (164)
Q Consensus       114 L~~eP~n  120 (164)
                      +++.|++
T Consensus       312 l~~~~~~  318 (368)
T 1fch_A          312 LNMQRKS  318 (368)
T ss_dssp             HHHHHTC
T ss_pred             HHhCCCC
Confidence            9999998

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.00  E-value=5.2e-05  Score=59.05  Aligned_cols=74  Identities=4%  Similarity=-0.037  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      ++.+.+.++..+.+..  .+..+|++.++..+..  +| ...++++.+|..+.+.|+|++|+.+++++++..|++..+.
T Consensus        89 ~~~~~~~l~~~~~~~~--~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  162 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVG--HKNEHARRYLSKATTL--EK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM  162 (330)
T ss_dssp             STHHHHHHHHHHHHSC--SCHHHHHHHHHHHHTT--CT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred             CHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence            4444455554444221  1344455555554443  12 2234555555555555555555555555555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.98  E-value=3.4e-05  Score=62.15  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +.+..|+.|..+.   ..++..+|+++++..+..  +| ...++++.++..|+++|+|++|+.+++++++++|++..+..
T Consensus        64 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  137 (365)
T 4eqf_A           64 DWPGAFEEGLKRL---KEGDLPVTILFMEAAILQ--DP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM  137 (365)
T ss_dssp             TCTTHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chhHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4567899999999   667888999999998885  34 44689999999999999999999999999999999876544


Q ss_pred             HH
Q 031176          126 LK  127 (164)
Q Consensus       126 L~  127 (164)
                      ..
T Consensus       138 ~l  139 (365)
T 4eqf_A          138 AL  139 (365)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.97  E-value=4.6e-05  Score=69.08  Aligned_cols=81  Identities=16%  Similarity=0.109  Sum_probs=69.7

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++.+.++.+++|.++.   ..++..+|++.++..+..  +| +..+++|++|..++++|+|++|+.+++++|+++|++..
T Consensus       429 ~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  502 (681)
T 2pzi_A          429 FSESVELPLMEVRALL---DLGDVAKATRKLDDLAER--VG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA  502 (681)
T ss_dssp             CTTCSHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             cccchhHHHHHHHHHH---hcCCHHHHHHHHHHHhcc--Cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            3557899999999999   678899999999999985  34 44699999999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 031176          123 ALGLKKT  129 (164)
Q Consensus       123 a~~L~~~  129 (164)
                      +....-.
T Consensus       503 ~~~~lg~  509 (681)
T 2pzi_A          503 PKLALAA  509 (681)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7654433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.95  E-value=8.3e-05  Score=63.55  Aligned_cols=77  Identities=18%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      ..+.+.+++++.   ..++.++|++.++..+..  +| ...+.++.|+.+|.+.|++++|+++++++++++|+|..+..+
T Consensus       516 ~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          516 AATWANLGHAYR---KLKMYDAAIDALNQGLLL--ST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--SS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            678999999999   567889999999998886  34 345999999999999999999999999999999999988776


Q ss_pred             HHH
Q 031176          127 KKT  129 (164)
Q Consensus       127 ~~~  129 (164)
                      ...
T Consensus       590 l~~  592 (597)
T 2xpi_A          590 LKR  592 (597)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.93  E-value=8.2e-05  Score=64.30  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDV-QRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~-~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ...+......+++|.++.   ..++. .+|++.++..+..  +| ...++++.||..|+++|+|++|+.+++++|+++|+
T Consensus        96 ~~~~~~a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A           96 GSAQVEAQALMLKGKALN---VTPDYSPEAEVLLSKAVKL--EP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             TTCCCCHHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred             ccCchhHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            334456777777777777   45566 7777877777775  23 34477788888888888888888888888888777

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.90  E-value=0.00029  Score=56.55  Aligned_cols=91  Identities=19%  Similarity=0.136  Sum_probs=63.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHH-------------------------------HHHHHHHHHHhhCCC
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDV-------------------------------QRGIAMLEASLANSS   81 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~-------------------------------~~gi~lLe~ll~~~~   81 (164)
                      +..|.+. ..++.++++.+++|.+++...+.++-                               ..+++.|+..+..  
T Consensus       137 ~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--  214 (287)
T 3qou_A          137 LPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--  214 (287)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--
Confidence            4455555 45666789999999998854432211                               1134444454553  


Q ss_pred             CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc--HHHHHHH
Q 031176           82 PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW--RQALGLK  127 (164)
Q Consensus        82 ~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n--~Qa~~L~  127 (164)
                      +| +..+.+|.||..+...|+|++|+..++++|+.+|++  .++....
T Consensus       215 ~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          215 NP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            34 455899999999999999999999999999999998  4444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.90  E-value=4.7e-05  Score=65.75  Aligned_cols=80  Identities=10%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--------------HHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--------------REKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--------------rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      .....+++++.+.   ..+++.+|+..++..+..  +|...              ..+++++|.+|+++++|++|+.+++
T Consensus       267 ~a~~~~~~G~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          267 QAAIVKEKGTVYF---KGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3567888899998   577899999999998884  24332              5899999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHH
Q 031176          112 QCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ++|+++|+|..+.-.+-.+
T Consensus       342 ~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHH
Confidence            9999999998775544333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.87  E-value=0.00019  Score=61.25  Aligned_cols=94  Identities=14%  Similarity=0.049  Sum_probs=69.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN----SSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~----~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      .+.|.+. ...+.++.+.+.+++.+.   ..++.++|++++++.+..    ..+|....+.++.++.+|++.|+|++|++
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  537 (597)
T 2xpi_A          461 NEYLQSSYALFQYDPLLLNELGVVAF---NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID  537 (597)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4444444 334457788888899888   456778888888887664    12343346889999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHH
Q 031176          109 ILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++++++++|+|..+....-.+
T Consensus       538 ~~~~~~~~~p~~~~~~~~l~~~  559 (597)
T 2xpi_A          538 ALNQGLLLSTNDANVHTAIALV  559 (597)
T ss_dssp             HHHHHHHHSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999988665554444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.86  E-value=5.9e-05  Score=63.80  Aligned_cols=83  Identities=12%  Similarity=0.084  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-------------CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-------------SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-------------~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      .+..++.|..+.   ..++..+|++.++..+...             ...+....+++++|..|+++++|++|+.+++++
T Consensus       223 a~~~~~~g~~~~---~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          223 SEDLKNIGNTFF---KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            355777788888   5667788888888877610             012355689999999999999999999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHh
Q 031176          114 LEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       114 L~~eP~n~Qa~~L~~~Ie~  132 (164)
                      |+++|+|.++.-.+-.+-.
T Consensus       300 l~~~p~~~~a~~~lg~~~~  318 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQ  318 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHH
Confidence            9999999887665555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.86  E-value=8.1e-06  Score=60.41  Aligned_cols=75  Identities=9%  Similarity=0.059  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      .+..+..|..++   ..++..+++..++..+..  +| +..+.++.+|..+.+.|+|++|+.+++++++.+| +..+..+
T Consensus         6 ~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~   78 (176)
T 2r5s_A            6 DEQLLKQVSELL---QQGEHAQALNVIQTLSDE--LQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSL   78 (176)
T ss_dssp             CTTHHHHHHHHH---HTTCHHHHHHHHHTSCHH--HH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence            466788888888   556677888888887774  23 4458888888888888888888888888888888 7766555


Q ss_pred             HH
Q 031176          127 KK  128 (164)
Q Consensus       127 ~~  128 (164)
                      ..
T Consensus        79 ~~   80 (176)
T 2r5s_A           79 IA   80 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.82  E-value=5.1e-05  Score=58.62  Aligned_cols=73  Identities=8%  Similarity=-0.037  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc------hHH-----HHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ------QRE-----KLYLLAVGYYRTGEYAKSRQILEQCLE  115 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~------~rd-----~lY~LAlg~~kl~~Y~~A~~~~~~lL~  115 (164)
                      ....++.+..+.   ..+++++|++..+..+.-  +|..      ..+     ||+++|.++.++|+|++|+.+++++|+
T Consensus        11 a~~~~~~G~~l~---~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           11 AYLALSDAQRQL---VAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455677788887   677889999999998885  3431      223     999999999999999999999999999


Q ss_pred             h-------CCCcHHHH
Q 031176          116 I-------APDWRQAL  124 (164)
Q Consensus       116 ~-------eP~n~Qa~  124 (164)
                      +       +|++..+-
T Consensus        86 l~n~~~e~~pd~~~A~  101 (159)
T 2hr2_A           86 YFNRRGELNQDEGKLW  101 (159)
T ss_dssp             HHHHHCCTTSTHHHHH
T ss_pred             hhhccccCCCchHHHH
Confidence            9       99987765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.81  E-value=0.00014  Score=49.73  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           68 RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        68 ~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      .+++.++..+..  +| ...+.++.+|..+++.|+|++|+.+++++++++|++..+....-.+
T Consensus         3 ~a~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   62 (115)
T 2kat_A            3 AITERLEAMLAQ--GT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT   62 (115)
T ss_dssp             CHHHHHHHHHTT--TC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            467888888885  34 4458999999999999999999999999999999998766544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.80  E-value=0.00018  Score=60.26  Aligned_cols=76  Identities=11%  Similarity=0.130  Sum_probs=43.2

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      .++.+.+.++.++.   ..++..+|++.++..+..  +| ...+.++.+|..+++.|+|++|+.+++++++..|++..+.
T Consensus       308 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  381 (537)
T 3fp2_A          308 EYPPTYYHRGQMYF---ILQDYKNAKEDFQKAQSL--NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP  381 (537)
T ss_dssp             TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            34555666666665   344555666666665553  22 2235666666666666666666666666666666665443


Q ss_pred             HH
Q 031176          125 GL  126 (164)
Q Consensus       125 ~L  126 (164)
                      ..
T Consensus       382 ~~  383 (537)
T 3fp2_A          382 TF  383 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.79  E-value=5.2e-05  Score=63.62  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ..+..++.|..+.   ..++..+|++.++..+..  +| ...++++.+|..|+++|+|++|+++++++++++|+|..+..
T Consensus        24 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   97 (537)
T 3fp2_A           24 YAVQLKNRGNHFF---TAKNFNEAIKYYQYAIEL--DP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL   97 (537)
T ss_dssp             HHHHHHHHHHHHH---HTTCCC-CHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHH---HhccHHHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHH
Confidence            4556666777777   455566777777776664  23 33477777777777777777777777777777777766554


Q ss_pred             HHHHH
Q 031176          126 LKKTV  130 (164)
Q Consensus       126 L~~~I  130 (164)
                      ..-.+
T Consensus        98 ~la~~  102 (537)
T 3fp2_A           98 RRASA  102 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=7.3e-05  Score=61.94  Aligned_cols=79  Identities=11%  Similarity=0.009  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch----------------HHHHHHHHHHHHhhcchHHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ----------------REKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~----------------rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      ....++.++.+.   ..++..+|+..++..+..  .|...                ..+++++|.+|+++++|++|+.++
T Consensus       179 a~~~~~~g~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          179 ADRRKMDGNSLF---KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHTC---SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            455667777777   566778888888887764  23222                149999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHH
Q 031176          111 EQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++|+++|+|..+.-.+-.+
T Consensus       254 ~~al~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHH
Confidence            99999999998776544433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.71  E-value=0.00033  Score=51.58  Aligned_cols=51  Identities=25%  Similarity=0.296  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           69 GIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        69 gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ++..++..+..  +| +..+.+|.||..+.+.|+|++|+.+++++|+.+|++..
T Consensus        93 a~~~~~~al~~--~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           93 ELKRLEQELAA--NP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             HHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            57777777775  34 44599999999999999999999999999999998643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.67  E-value=0.00024  Score=53.69  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHH-h-cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhc
Q 031176           29 IIAGCEREVAEA-N-DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTG  101 (164)
Q Consensus        29 ~l~~~e~~y~~~-~-~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~  101 (164)
                      ...++-+.+.+. . ..+....+.+++|+++.   ..++..+|+..++..+...     .+++..-.+++.+|..|+.+|
T Consensus        23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g   99 (283)
T 3edt_B           23 LCKQALEDLEKTSGHDHPDVATMLNILALVYR---DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG   99 (283)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence            334444444443 2 22346788999999999   5667778888888876531     234566789999999999999


Q ss_pred             chHHHHHHHHHHHhh
Q 031176          102 EYAKSRQILEQCLEI  116 (164)
Q Consensus       102 ~Y~~A~~~~~~lL~~  116 (164)
                      +|++|+.++++++++
T Consensus       100 ~~~~A~~~~~~al~~  114 (283)
T 3edt_B          100 KYKEAEPLCKRALEI  114 (283)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00021  Score=59.22  Aligned_cols=84  Identities=15%  Similarity=0.013  Sum_probs=68.4

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+.+.|.+. ..+ +++.+.+++|.+++   ..++..+|++.++..+..  +| ...++++.+|.+++++|+|++|+.++
T Consensus        24 ~A~~~~~~al~~~-p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~   96 (514)
T 2gw1_A           24 DAIKYYNWALELK-EDPVFYSNLSACYV---SVGDLKKVVEMSTKALEL--KP-DYSKVLLRRASANEGLGKFADAMFDL   96 (514)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhcc--Ch-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444555555 223 46889999999999   677899999999998886  34 44599999999999999999999999


Q ss_pred             HHHHhhCCCcHH
Q 031176          111 EQCLEIAPDWRQ  122 (164)
Q Consensus       111 ~~lL~~eP~n~Q  122 (164)
                      +++++..|.+..
T Consensus        97 ~~~~~~~~~~~~  108 (514)
T 2gw1_A           97 SVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHSSSCCGG
T ss_pred             HHHHhcCCCccc
Confidence            999999997654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.65  E-value=0.00012  Score=66.46  Aligned_cols=89  Identities=10%  Similarity=-0.016  Sum_probs=67.5

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. ..++.+.++.++++.++.   ..++..+|++.++..+..  +| +.-+++++||..+.++|+|++ +.++++
T Consensus       453 ~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l--~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~  525 (681)
T 2pzi_A          453 TRKLDDLAERVGWRWRLVWYRAVAEL---LTGDYDSATKHFTEVLDT--FP-GELAPKLALAATAELAGNTDE-HKFYQT  525 (681)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--ST-TCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence            3334444 345567889999999998   677888999999998885  34 345888888888888888888 888888


Q ss_pred             HHhhCCCcHHHHHHHHH
Q 031176          113 CLEIAPDWRQALGLKKT  129 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~  129 (164)
                      +|+++|++..+..-+-.
T Consensus       526 al~~~P~~~~a~~~lg~  542 (681)
T 2pzi_A          526 VWSTNDGVISAAFGLAR  542 (681)
T ss_dssp             HHHHCTTCHHHHHHHHH
T ss_pred             HHHhCCchHHHHHHHHH
Confidence            88888888776544333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.62  E-value=0.00053  Score=56.89  Aligned_cols=89  Identities=9%  Similarity=0.075  Sum_probs=65.9

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH-HHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA-VGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA-lg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..++....+.+++|....   ..++.++|++.++..+....++......++.++ +..+.+|+|++|+.+++++|++.|+
T Consensus       328 ~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          328 EANDNLFRVCSILASLHA---LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HHCTTTCCCHHHHHHHHH---HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             hcCCchhhhhhhHHHHHH---HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            335557788899999988   667888999999999986322222233444444 6678999999999999999999999


Q ss_pred             cHHHHHHHHHHHh
Q 031176          120 WRQALGLKKTVED  132 (164)
Q Consensus       120 n~Qa~~L~~~Ie~  132 (164)
                      +..........++
T Consensus       405 ~~~~~~~~~~l~~  417 (472)
T 4g1t_A          405 SREKEKMKDKLQK  417 (472)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9876655544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.55  E-value=0.00021  Score=48.51  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176           85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus        85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      +..+.+|.||..++++|+|++|+.+++++++++|++..+....-.+-..
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   53 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER   53 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4458999999999999999999999999999999999877666555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.51  E-value=0.0007  Score=51.07  Aligned_cols=68  Identities=13%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      ...+.+++|.++.   ..++..+|++.++..+...     .+.+....+++.+|..++++|+|++|+.++++++++
T Consensus        84 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           84 VAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5678889999998   6677888888888876531     123466789999999999999999999999999999

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.50  E-value=0.00021  Score=57.43  Aligned_cols=72  Identities=17%  Similarity=0.133  Sum_probs=63.0

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      +.+.+..+..|..+.   ..++..+|+..++..+..  +| +..+.++.||..+.+.|++++|+.+++++++.+|++.
T Consensus       114 p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          114 PREEELXAQQAMQLM---QESNYTDALPLLXDAWQL--SN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             CCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             CCchhhHHHHHHHHH---hCCCHHHHHHHHHHHHHh--CC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            346788999999999   677889999999999986  45 4459999999999999999999999999999999654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.49  E-value=0.00089  Score=53.66  Aligned_cols=90  Identities=11%  Similarity=-0.011  Sum_probs=70.4

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcC----ChhH-------HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSR----QAED-------VQRGIAMLEASLANSSPPLQQREKLYLLAVGYY   98 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~----~~~d-------~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~   98 (164)
                      .++...|++. ...+.+++..++|+..+..+.    ..++       ..+++..++..+.. -+| +..+.|+.++..+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p-~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHH
Confidence            5666778877 556668899999998887431    1223       48899999998882 123 55688999999999


Q ss_pred             hhcchHHHHHHHHHHHhhCCCcHH
Q 031176           99 RTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        99 kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +.|++++|+..++++|++.|++..
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~  134 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPT  134 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTH
T ss_pred             hcCCHHHHHHHHHHHHhccccCcc
Confidence            999999999999999999998865

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.48  E-value=5.5e-05  Score=65.96  Aligned_cols=76  Identities=12%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      +.+++|..+.   ..++..+|++.+++.+..  +| ...++++++|..|+++|+|++|+.+++++|+++|++.++...+-
T Consensus         8 ~~~~lg~~~~---~~g~~~~A~~~~~~Al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   81 (477)
T 1wao_1            8 ELKTQANDYF---KAKDYENAIKFYSQAIEL--NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   81 (477)
T ss_dssp             TSSSSSSSTT---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3344455555   677899999999999986  34 44699999999999999999999999999999999987655444


Q ss_pred             HH
Q 031176          129 TV  130 (164)
Q Consensus       129 ~I  130 (164)
                      .+
T Consensus        82 ~~   83 (477)
T 1wao_1           82 AS   83 (477)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.48  E-value=0.00031  Score=56.21  Aligned_cols=74  Identities=4%  Similarity=0.038  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL----QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~----~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ..+..+++..+.   ..++..+|++.++..+....+..    ...++++.++++|.++|+|++|+.+++++++++|++..
T Consensus       158 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          158 NKCFIKCADLKA---LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            456788899998   56788999999999988522111    12357899999999999999999999999999999765


Q ss_pred             H
Q 031176          123 A  123 (164)
Q Consensus       123 a  123 (164)
                      .
T Consensus       235 ~  235 (292)
T 1qqe_A          235 S  235 (292)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.42  E-value=0.00058  Score=43.65  Aligned_cols=48  Identities=25%  Similarity=0.437  Sum_probs=40.4

Q ss_pred             CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           83 PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        83 ~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      |+...+.++.+|..+++.|+|++|+.+++++++.+|++.++....-.+
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   52 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   52 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            555678999999999999999999999999999999998765544433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.37  E-value=0.0012  Score=54.98  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ++.|.++.++.   ..++..+|+..|++.+....+|....|.+|++++++.++|+.++|+..+++++..+|+ .++..
T Consensus       172 ~a~~~LG~al~---~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          172 AAGVAHGVAAA---NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHH---HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            46666677766   5566677777777766431114335577777777777777777777777777777777 55443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.36  E-value=0.0019  Score=49.28  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHH
Q 031176           31 AGCEREVAEANDDKQKSESIMRLSWALVHSRQ-AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAK  105 (164)
Q Consensus        31 ~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~-~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~  105 (164)
                      .+..+-|++.. +...+.+.++++..+..... +.+..+|++.++..+.. +++....+++|.|+..|.+    .+|+++
T Consensus        70 ~~A~~~~~~A~-~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A           70 PQARQLAEKAV-EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            33444444441 12367889999998884222 67889999999998875 2211346899999999999    889999


Q ss_pred             HHHHHHHHHhhCCCcHHHHHHH
Q 031176          106 SRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus       106 A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      |+.+++++++. |++..+..-.
T Consensus       148 A~~~~~~A~~~-~~~~~a~~~L  168 (212)
T 3rjv_A          148 ASEYFKGSSSL-SRTGYAEYWA  168 (212)
T ss_dssp             HHHHHHHHHHT-SCTTHHHHHH
T ss_pred             HHHHHHHHHHc-CCCHHHHHHH
Confidence            99999999998 6666654433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.0019  Score=53.55  Aligned_cols=79  Identities=22%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             CCchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           44 KQKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +..+.+..++++.+..- ...++..+++..++..+..  +| ...+.++++|..|.+.|+|++|..++++++++.|++..
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  282 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--AP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY  282 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--Cc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence            34556666666665543 2345677899999988875  34 45689999999999999999999999999999999987


Q ss_pred             HHH
Q 031176          123 ALG  125 (164)
Q Consensus       123 a~~  125 (164)
                      +..
T Consensus       283 ~~~  285 (472)
T 4g1t_A          283 LHC  285 (472)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.30  E-value=0.0016  Score=50.00  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      ...+.+++++++.   ..++..+|++.++..+...     .+++....+++.+|..+++.|+|++|+.++++++++
T Consensus       110 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          110 VAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5678888899988   6677888888888877641     234566788999999999999999999999999998

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.29  E-value=0.002  Score=51.54  Aligned_cols=86  Identities=10%  Similarity=-0.072  Sum_probs=50.0

Q ss_pred             HHHHHHHHH-h-cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           32 GCEREVAEA-N-DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        32 ~~e~~y~~~-~-~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      .+...|.+. . -++.+....++|+..+.   ..++..+++++++..+..  +|.+....|+.++..+.+.|++++|+.+
T Consensus        82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~  156 (308)
T 2ond_A           82 EAANIYERAISTLLKKNMLLYFAYADYEE---SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence            344445554 3 24445566666666666   344566667777666664  2322222666666666667777777777


Q ss_pred             HHHHHhhCCCcHH
Q 031176          110 LEQCLEIAPDWRQ  122 (164)
Q Consensus       110 ~~~lL~~eP~n~Q  122 (164)
                      ++++++..|.+.+
T Consensus       157 ~~~a~~~~p~~~~  169 (308)
T 2ond_A          157 FKKAREDARTRHH  169 (308)
T ss_dssp             HHHHHTSTTCCTH
T ss_pred             HHHHHhcCCCCHH
Confidence            7777776666543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.27  E-value=0.002  Score=52.68  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh-----CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLA-----NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~-----~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ...+.+++|++..   ..++..+|++.+++.+.     .  +|.. ..+++.||..|+++|+|++|+.++++++++.+.
T Consensus       221 ~~~~~~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          221 IAISLLNIANSYD---RSGDDQMAVEHFQKAAKVSREKV--PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHC--GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhhC--ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3567889999998   67788899999998887     4  3434 799999999999999999999999999999654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.24  E-value=0.00052  Score=53.22  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             chHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhCC
Q 031176           46 KSESIMRLSWALVHSR-QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~eP  118 (164)
                      ++.+.++++..+.... ..++..+|++.++..+.. +    ..++++.|+..|.+    .++|++|+.+++++++..|
T Consensus       145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            5667777777776421 155677777777776664 1    24777777777777    7777777777777777766

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.24  E-value=0.0016  Score=51.63  Aligned_cols=70  Identities=16%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHh---hCCCCCCchH-HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASL---ANSSPPLQQR-EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll---~~~~~~~~~r-d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+.+++++.+.   ..++..+|++.++..+   ....+..... .+++++|..|+++|+|++|+.+++++|++.|+
T Consensus       155 ~~~~~~lg~~y~---~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          155 LYIENAIANIYA---ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            457788888888   6778889999998877   3311121222 69999999999999999999999999988643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.23  E-value=0.002  Score=49.45  Aligned_cols=70  Identities=14%  Similarity=0.241  Sum_probs=57.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e  117 (164)
                      ....+.+.++..+.   ..++..+|+.+++..+...     .+++....+++.+|..|++.|+|++|+.++++++++.
T Consensus        25 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           25 ARLRTLHNLVIQYA---SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            35688889999998   5667888888888877620     0245677999999999999999999999999999984

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.19  E-value=0.0024  Score=43.70  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+.+++|+++.   ..++..+|++.++..+..   .+++...-.+++.+|..|+++|+|++|++++++++++-+.
T Consensus        89 ~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           89 AQSCYSLGNTYT---LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            556777888888   455666777777765542   1333445678888999999999999999999998887654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.14  E-value=0.0037  Score=45.41  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=58.5

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh---CC
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLA---NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI---AP  118 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~---~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~---eP  118 (164)
                      ....+.+.+++.+.   ..++..+|+..+++.+.   ..+++...-.+++.+|..|..+|+|++|+.++++++++   .|
T Consensus        24 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           24 TASGARFMLGYVYA---FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             THHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            46788888999998   45677788888877665   22335566789999999999999999999999999999   55


Q ss_pred             Cc
Q 031176          119 DW  120 (164)
Q Consensus       119 ~n  120 (164)
                      ++
T Consensus       101 ~~  102 (203)
T 3gw4_A          101 ED  102 (203)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.13  E-value=0.0018  Score=56.59  Aligned_cols=84  Identities=12%  Similarity=0.076  Sum_probs=66.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI----  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~----  116 (164)
                      ...+.-++|..+.   +.+++++|+.+++..+...     .+.++.--.+++||..|..+|+|++|..+++++|++    
T Consensus       339 ~a~~~~nLa~~y~---~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          339 MLHMMYQAMGVCL---YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            4567778888887   6778888888887766421     223455677899999999999999999999999986    


Q ss_pred             -CCCcHHHHHHHHHHHh
Q 031176          117 -APDWRQALGLKKTVED  132 (164)
Q Consensus       117 -eP~n~Qa~~L~~~Ie~  132 (164)
                       -|+++..+.|++.+++
T Consensus       416 lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          416 HGKDHPYISEIKQEIES  432 (433)
T ss_dssp             TCTTCHHHHHHHHHHHC
T ss_pred             cCCCChHHHHHHHHHhc
Confidence             6999999999987764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0017  Score=42.78  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      -+.++.+|..+++.|+|++|..+++++++++|++..+....-
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   45 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA   45 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            478999999999999999999999999999999987654433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.07  E-value=0.0022  Score=51.54  Aligned_cols=80  Identities=14%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH--
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR--  121 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~--  121 (164)
                      ..+.++++..+.   ..++..+|++.++..+...   ..+.....+++.++..|..+|+|++|+.+++++| ++|++.  
T Consensus       155 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          155 AELIGKASRLLV---RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence            577888899988   5678889999998877631   1111223467777888888899999999999999 999654  


Q ss_pred             -HHHHHHHHH
Q 031176          122 -QALGLKKTV  130 (164)
Q Consensus       122 -Qa~~L~~~I  130 (164)
                       ++..+...+
T Consensus       231 ~e~~~l~~l~  240 (307)
T 2ifu_A          231 EDCAALEDLL  240 (307)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             444444444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.05  E-value=0.0015  Score=51.80  Aligned_cols=69  Identities=16%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN----SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~----~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +..+++.+..   ..++..+|++.++..+..    ..++...-.++|++|..|+++|+|++|+.+++++|++.|.+
T Consensus       157 ~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          157 IENAIANIYA---ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            5677777777   566788999999887731    01234455689999999999999999999999999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.01  E-value=0.016  Score=44.07  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHH-hcCC--CchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---
Q 031176           29 IIAGCEREVAEA-NDDK--QKSESIMRLSWALVHSRQ-AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG---  101 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~--~s~~~~F~yA~aLi~S~~-~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~---  101 (164)
                      +..+...-|.+. ..++  ..+.+.++++..+..... +.+..+|++.++..+..   + ...+++|.|+..|.+..   
T Consensus       104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~-~~~~a~~~Lg~~y~~g~gg~  179 (212)
T 3rjv_A          104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---S-RTGYAEYWAGMMFQQGEKGF  179 (212)
T ss_dssp             CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---S-CTTHHHHHHHHHHHHCBTTT
T ss_pred             CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---C-CCHHHHHHHHHHHHcCCCCC
Confidence            445556666666 3333  238999999999996433 77899999999998885   1 22469999999998753   


Q ss_pred             ---chHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176          102 ---EYAKSRQILEQCLEIAPDWRQALGLKKTVE  131 (164)
Q Consensus       102 ---~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie  131 (164)
                         |+++|+.+++++.+.  .+..+......++
T Consensus       180 ~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~  210 (212)
T 3rjv_A          180 IEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS  210 (212)
T ss_dssp             BCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence               999999999999987  4666666665554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.97  E-value=0.0036  Score=51.05  Aligned_cols=70  Identities=10%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+.+++|+++.   ..++..+|++.++..+..   ..+++....+++.||..|+++|+|++|..++++++++.|.
T Consensus       224 ~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          224 GRTLYNIGLCKN---SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            468889999998   667888999999887771   0132456789999999999999999999999999998543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.97  E-value=0.0027  Score=54.05  Aligned_cols=91  Identities=11%  Similarity=0.065  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcch
Q 031176           29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSR-QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEY  103 (164)
Q Consensus        29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y  103 (164)
                      +.....+-|.+.... .++++.+++++.+.... ...+..+|++.++..+.. +    ..+++|.|+..|++    .+|+
T Consensus       346 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~----~~~a~~~Lg~~y~~g~g~~~d~  419 (490)
T 2xm6_A          346 EHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G----LSAAQVQLGEIYYYGLGVERDY  419 (490)
T ss_dssp             HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C----CHHHHHHHHHHHHcCCCCCCCH
Confidence            444444444444111 35677777777777421 146777788887777664 2    24778888888887    7888


Q ss_pred             HHHHHHHHHHHhhCCC---cHHHHH
Q 031176          104 AKSRQILEQCLEIAPD---WRQALG  125 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~---n~Qa~~  125 (164)
                      ++|..+++++++..|+   |..+..
T Consensus       420 ~~A~~~~~~A~~~~~~~~~~~~a~~  444 (490)
T 2xm6_A          420 VQAWAWFDTASTNDMNLFGTENRNI  444 (490)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCcCCHHHHH
Confidence            8888888888888844   665544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.94  E-value=0.0017  Score=51.44  Aligned_cols=84  Identities=6%  Similarity=-0.035  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHH-HHHHHHHHhhCCCcHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKS-RQILEQCLEIAPDWRQA  123 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A-~~~~~~lL~~eP~n~Qa  123 (164)
                      .+.+++|+++.   ..++..+|++.++..+..   ..++...-.++|++|..|.++|+|++| ..++++++.+..... -
T Consensus       197 ~~~~nlg~~y~---~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~-~  272 (293)
T 2qfc_A          197 KVRYNHAKALY---LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE-M  272 (293)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHhHHHHHH---HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC-c
Confidence            68899999999   777888999999887653   123334578999999999999999999 888998886642211 1


Q ss_pred             HHHHHHHHhHhh
Q 031176          124 LGLKKTVEDRIA  135 (164)
Q Consensus       124 ~~L~~~Ie~~~~  135 (164)
                      ..+.+.|+..+.
T Consensus       273 ~~~~~~~~~~~~  284 (293)
T 2qfc_A          273 HAYKEALVNKIS  284 (293)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHH
Confidence            223555555444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.94  E-value=0.0058  Score=47.17  Aligned_cols=81  Identities=9%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             CCchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhCC
Q 031176           44 KQKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~eP  118 (164)
                      ..++++.++++..+... ...++..+|++.++..+.. +    ..+++|+|+..|.+    .++|++|+.+++++++.. 
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-  108 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-  108 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence            45778888888888831 1156778888888888875 1    35888889998888    899999999988888873 


Q ss_pred             CcHHHHHHHHHHH
Q 031176          119 DWRQALGLKKTVE  131 (164)
Q Consensus       119 ~n~Qa~~L~~~Ie  131 (164)
                       +..+....-.+-
T Consensus       109 -~~~a~~~lg~~~  120 (273)
T 1ouv_A          109 -YAEGCASLGGIY  120 (273)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHH
Confidence             555554444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.93  E-value=0.0022  Score=50.82  Aligned_cols=68  Identities=7%  Similarity=-0.047  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIA  117 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~e  117 (164)
                      ..+.+++++++.   ..++..+|++.++..+..   .++....-++++++|..|+++| +|++|+++++++|++-
T Consensus       196 ~~~~~nlg~~y~---~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          196 VKVRYNHAKALY---LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            467899999999   667888999988877652   1334455799999999999999 5799999999999764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.92  E-value=0.0076  Score=41.13  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+.+++++.+.   ..++..+|++.++..+..   ..++.....+++++|..++.+|+|++|..++++++++.+.
T Consensus        49 ~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           49 RIAYSNLGNAYI---FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            357888899998   556777888888876552   1333445678999999999999999999999999987543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.91  E-value=0.0029  Score=46.00  Aligned_cols=70  Identities=17%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CC-CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SS-PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~-~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP  118 (164)
                      ...+.+++++.+.   ..++..+|++.+++.+..   .+ ++...-.+++.+|..+..+|+|++|+.++++++++.+
T Consensus        65 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           65 EHRALHQVGMVER---MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4677888888888   455677777777775552   22 2224567899999999999999999999999997743

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.84  E-value=0.0037  Score=45.08  Aligned_cols=68  Identities=7%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             CchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhC
Q 031176           45 QKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~e  117 (164)
                      .++.+.++++..+.+. ..+.|..+|++.++..... +    ..++.|+|+..|.+    .+|+++|+++++++.+..
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            3678888888888742 1266888888888887775 2    24788888888888    888888888888888774

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.83  E-value=0.0027  Score=50.62  Aligned_cols=73  Identities=14%  Similarity=0.041  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           47 SESIMRLSWALVHSRQA-EDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ..+..+++..+.   .. ++..+|++.+++.+...   +++....++++.++..+.++|+|++|+.++++++++.|++..
T Consensus       117 a~~~~~lg~~~~---~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          117 ANFKFELGEILE---NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            346667777766   33 67888888888877631   111122578999999999999999999999999999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.80  E-value=0.0094  Score=52.76  Aligned_cols=86  Identities=8%  Similarity=0.003  Sum_probs=67.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI----  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~----  116 (164)
                      ...+.-++|..+.   +.+++.+|+.+++..+...     .+.+..-..+++||..|..+|+|++|..+++++|++    
T Consensus       350 ~a~~~~nLa~~y~---~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          350 VLRLLSIASEVLS---YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4677888888888   6677888888777765421     223355678899999999999999999999999974    


Q ss_pred             -CCCcHHHHHHHHHHHhHh
Q 031176          117 -APDWRQALGLKKTVEDRI  134 (164)
Q Consensus       117 -eP~n~Qa~~L~~~Ie~~~  134 (164)
                       -|+++...+++..+....
T Consensus       427 lG~~Hp~~~~~~~~l~~~~  445 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTE  445 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHH
Confidence             799999998887776544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.76  E-value=0.0031  Score=48.28  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+.+++|..+.   ..++..+|+..++..+...   .++.....+++.||..|.++|+|++|+.++++++++.|+
T Consensus       263 ~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          263 AQSCYSLGNTYT---LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            455566666666   3445566666666554420   122233456777777777777777777777777777664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.74  E-value=0.0034  Score=48.06  Aligned_cols=71  Identities=13%  Similarity=0.096  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .+.+.+++.+.   ..++..++++.++..+..   .++++....+++.+|..|+.+|+|++|+.++++++++.|...
T Consensus        44 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  117 (338)
T 3ro2_A           44 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  117 (338)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence            56677788777   455677888888776542   133445567888888888888888888888888888877543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.72  E-value=0.0056  Score=48.79  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .+.+.++.++.   ..++..+|+..++..+..   .++++...++++.+|..|+.+|+|++|+.++++++++.|..
T Consensus        48 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           48 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            45666777776   455666777777765432   23334455677777778888888888888888887777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.72  E-value=0.0032  Score=51.03  Aligned_cols=65  Identities=14%  Similarity=0.093  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      +.+.++.++.   ..++..+|++.++..+..   ..++.....+++.+|..|+.+|+|++|+.++++++++
T Consensus        88 ~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A           88 IYSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3444444444   334444444444443331   1112233344555555555555555555555555554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.69  E-value=0.0096  Score=48.13  Aligned_cols=68  Identities=19%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ---REKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~---rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      .......+..+..+.   ..++..+|+..++..+..  +|.+.   ..+++.+|..|+.+|+|++|+.++++++++
T Consensus        45 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (411)
T 4a1s_A           45 SSMCLELALEGERLC---NAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL  115 (411)
T ss_dssp             HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            346778889999999   667889999999998885  34443   499999999999999999999999999998

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.66  E-value=0.012  Score=51.09  Aligned_cols=85  Identities=7%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI----  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~----  116 (164)
                      ...+.-++|..+.   +.++.++|+.+.+..+...     .+.+..--.++.||..|..+|+|++|+.+++++|++    
T Consensus       328 ~~~~~~~L~~~y~---~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          328 QLKVLDCAMDACI---NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            4567778888877   6778888888888766421     223355677899999999999999999999999975    


Q ss_pred             -CCCcHHHHHHHHHHHhH
Q 031176          117 -APDWRQALGLKKTVEDR  133 (164)
Q Consensus       117 -eP~n~Qa~~L~~~Ie~~  133 (164)
                       -|+++..+.++..++..
T Consensus       405 lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHH
Confidence             79999999988776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.65  E-value=0.0061  Score=49.83  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh-----hC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE-----IA  117 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~-----~e  117 (164)
                      ...+.+++|.+..   ..++..+|++.++..+..   .+++...-.++++||..|.++|+|++|+.+++++++     .+
T Consensus       181 ~~~~~~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          181 TIQSLFVIAGNYD---DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence            3667888899888   566778888888876652   123344567899999999999999999999999999     67


Q ss_pred             CCcHHH
Q 031176          118 PDWRQA  123 (164)
Q Consensus       118 P~n~Qa  123 (164)
                      |....+
T Consensus       258 ~~~~~~  263 (378)
T 3q15_A          258 DLLPKV  263 (378)
T ss_dssp             GGHHHH
T ss_pred             hhHHHH
Confidence            766433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.64  E-value=0.0042  Score=49.86  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ..+..+++..+.   . ++..+|++.++..+...   +++....++++.+|..|.++|+|++|+.++++++++.|++.
T Consensus       116 a~~~~~lg~~~~---~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          116 AMALDRAGKLME---P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHT---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH---c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            456677777775   3 78889999998876531   12223358999999999999999999999999999988764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.64  E-value=0.0053  Score=51.13  Aligned_cols=94  Identities=10%  Similarity=-0.067  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHH-------HHHHHHH-------hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc
Q 031176           20 DQIPWCDRDIIAGC-------EREVAEA-------NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ   85 (164)
Q Consensus        20 ~~lp~~~~~~l~~~-------e~~y~~~-------~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~   85 (164)
                      -++|-++++++.-.       ..+|.+.       ....+.....|..+....   ..++..+++..|+..... .+|..
T Consensus        94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~---~~~r~~dA~~~l~~a~~~-~d~~~  169 (282)
T 4f3v_A           94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYG---AAERWTDVIDQVKSAGKW-PDKFL  169 (282)
T ss_dssp             CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHH---HTTCHHHHHHHHTTGGGC-SCHHH
T ss_pred             cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HcCCHHHHHHHHHHhhcc-CCccc
Confidence            56777888887642       2333333       112222226777776666   567788888888876653 22322


Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176           86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e  117 (164)
                      ..+.+|+|+.++.++|++++|+.++++++.-.
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            36799999999999999999999999998544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.52  E-value=0.042  Score=39.34  Aligned_cols=88  Identities=10%  Similarity=-0.000  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hc
Q 031176           27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TG  101 (164)
Q Consensus        27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~  101 (164)
                      +.+..+..+-|.+. ..+.+  .+.  ++..+.   +...+.+|++.++..... +    ..+++|+|+..|.+    .+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~---~g~~~~~A~~~~~~Aa~~-g----~~~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSN---SQINKQKLFQYLSKACEL-N----SGNGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTC---TTSCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCC
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHH---cCCCHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHcCCCCCc
Confidence            34566666677776 44433  333  666555   445667799999998885 3    35999999999999    99


Q ss_pred             chHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176          102 EYAKSRQILEQCLEIAPDWRQALGLKK  128 (164)
Q Consensus       102 ~Y~~A~~~~~~lL~~eP~n~Qa~~L~~  128 (164)
                      |+++|+++++++.+.  .+..+..-.-
T Consensus        76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg  100 (138)
T 1klx_A           76 DLRKAAQYYSKACGL--NDQDGCLILG  100 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence            999999999999886  5565554433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.51  E-value=0.0081  Score=47.87  Aligned_cols=70  Identities=16%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      +.+....+..+..+.   ..++..+|+..++..+... .++....++++.+|..|+..|+|++|+.++++++++
T Consensus         6 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            6 EASCLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             CCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            346677899999999   6678889999999988852 122235899999999999999999999999999887

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.51  E-value=0.0052  Score=47.21  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch----------HHHHHHHHHHHhhCCCcHHHHH
Q 031176           63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY----------AKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y----------~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      -...++++..++..+..  +| ..-+.|++++.++.++++|          ++|+.+++++|+++|++.++.-
T Consensus        15 ~~~feeA~~~~~~Ai~l--~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~   84 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKS--NP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence            34567888899888885  35 4569999999999999875          5999999999999999986543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.50  E-value=0.0042  Score=50.65  Aligned_cols=65  Identities=12%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           53 LSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        53 yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .+..+.   ..++..+|++.++..+..   ..++...-++++++|..|+.+|+|++|+.+++++|++.|.+
T Consensus       109 ~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  176 (383)
T 3ulq_A          109 RGMYEL---DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH  176 (383)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH---HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence            556555   567889999999997763   13344567899999999999999999999999999996654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.50  E-value=0.003  Score=41.40  Aligned_cols=77  Identities=6%  Similarity=-0.002  Sum_probs=58.5

Q ss_pred             HHHHHHHHHH-hcCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSE-SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~-~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ..+...|.+. ..++.+.. +.+++|.++.   ..++..+|++.++..+..  +|. ..+.+++        +.+.+|..
T Consensus        17 ~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p~-~~~~~~~--------~~~~~a~~   82 (99)
T 2kc7_A           17 ENALQALEEFLQTEPVGKDEAYYLMGNAYR---KLGDWQKALNNYQSAIEL--NPD-SPALQAR--------KMVMDILN   82 (99)
T ss_dssp             HHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CTT-STHHHHH--------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CCC-cHHHHHH--------HHHHHHHH
Confidence            3444555555 44555777 9999999999   677889999999999986  343 3355544        88999999


Q ss_pred             HHHHHHhhCCCcH
Q 031176          109 ILEQCLEIAPDWR  121 (164)
Q Consensus       109 ~~~~lL~~eP~n~  121 (164)
                      ++++++..+|++.
T Consensus        83 ~~~~~~~~~p~~~   95 (99)
T 2kc7_A           83 FYNKDMYNQLEHH   95 (99)
T ss_dssp             HHCCTTHHHHCCS
T ss_pred             HHHHHhccCcccc
Confidence            9999999999874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.48  E-value=0.025  Score=48.50  Aligned_cols=86  Identities=12%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             HHHHHHHHH-hcCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhhcchHHHHH
Q 031176           32 GCEREVAEA-NDDKQK-SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRTGEYAKSRQ  108 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s-~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl~~Y~~A~~  108 (164)
                      .++..|++. ..++.+ ..+..+|+..+.   ..++..+++++++..+..  .| .....++..+.. +...|++++|+.
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~Al~~--~~-~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFAR---RAEGIKSGRMIFKKARED--AR-TRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC--TT-CCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--cC-CchHHHHHHHHHHHHHcCChhHHHH
Confidence            344455555 222222 235555665555   355666777777776664  22 222222222222 235677777777


Q ss_pred             HHHHHHhhCCCcHHH
Q 031176          109 ILEQCLEIAPDWRQA  123 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa  123 (164)
                      +++++|+..|++..+
T Consensus       413 ~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          413 IFELGLKKYGDIPEY  427 (530)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCCHHH
Confidence            777777777776543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.28  E-value=0.014  Score=49.91  Aligned_cols=85  Identities=18%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-----chHHH
Q 031176           32 GCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-----EYAKS  106 (164)
Q Consensus        32 ~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-----~Y~~A  106 (164)
                      +..+-|.+..  ..++.+.|+++..+......++..+|++.++..+.. +    ..+++|+|+..|. .|     |+++|
T Consensus       235 ~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g----~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D----QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            3333444434  446677777777755344477778888888777764 2    3477888887777 44     88888


Q ss_pred             HHHHHHHHhhCCCcHHHHHHH
Q 031176          107 RQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus       107 ~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      +++++++.   |++..+.--.
T Consensus       307 ~~~~~~Aa---~g~~~A~~~L  324 (452)
T 3e4b_A          307 EAHFEKAV---GREVAADYYL  324 (452)
T ss_dssp             HHHHHTTT---TTCHHHHHHH
T ss_pred             HHHHHHHh---CCCHHHHHHH
Confidence            88887777   6666655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.016  Score=47.32  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC--------------chHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL--------------QQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~--------------~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      .|.++++-|-.++   +.+++.+|++.+.++++......              ....+++.|+..|++.|+|++|.+++.
T Consensus         3 ~p~~~l~~a~~l~---~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~   79 (434)
T 4b4t_Q            3 LPGSKLEEARRLV---NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIP   79 (434)
T ss_dssp             STTHHHHHHHHHH---HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4677889999999   66789999999999998632211              123579999999999999999999999


Q ss_pred             HHHhhCCCcHHH
Q 031176          112 QCLEIAPDWRQA  123 (164)
Q Consensus       112 ~lL~~eP~n~Qa  123 (164)
                      .+++..|...++
T Consensus        80 ~~~~~~~~~~~~   91 (434)
T 4b4t_Q           80 HSTEYMMQFAKS   91 (434)
T ss_dssp             HTHHHHHTSCHH
T ss_pred             HHHHHHHHccch
Confidence            999987775554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.23  E-value=0.032  Score=47.33  Aligned_cols=67  Identities=7%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~e  117 (164)
                      ++++.+++++.+.+...+.+.++|++.++..+.. +    ..+++|+|+..|++    .+++++|.++++++++..
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            5678899999888765577899999999998875 2    25899999999999    899999999999998864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.21  E-value=0.015  Score=49.96  Aligned_cols=84  Identities=12%  Similarity=0.023  Sum_probs=65.0

Q ss_pred             HHHHH-hcCCCchHHHHHHHHHHHhcC----ChhHHH-------HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           36 EVAEA-NDDKQKSESIMRLSWALVHSR----QAEDVQ-------RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~----~~~d~~-------~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      .|++. ...+.+++.-++|+..+.++.    ..+++.       +++.+++..+.. ..| +..+.|+.++..+.+.|++
T Consensus       260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-~~~~l~~~~~~~~~~~g~~  337 (530)
T 2ooe_A          260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEESRMKY  337 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-SCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHhcCCH
Confidence            45555 334457889999998888531    134443       899999998862 134 4568999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcH
Q 031176          104 AKSRQILEQCLEIAPDWR  121 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~  121 (164)
                      ++|+..++++|++.|.+.
T Consensus       338 ~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          338 EKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             HHHHHHHHHHHHSSSSCH
T ss_pred             HHHHHHHHHHhCccccCc
Confidence            999999999999999985

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.01  E-value=0.058  Score=46.01  Aligned_cols=78  Identities=12%  Similarity=0.118  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh----cchHHHHHHHHHHHhhCCCcHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT----GEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl----~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      +++.++++..+.....+.+..++++.++..+.. + + ..-..+|+|+..|.+.    +++++|+++++++.   |+|..
T Consensus       176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~  249 (452)
T 3e4b_A          176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-T-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA  249 (452)
T ss_dssp             TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-C-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-C-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence            348888888888766666888888888887775 2 2 2234557888888766    78888888888876   77776


Q ss_pred             HHHHHHHH
Q 031176          123 ALGLKKTV  130 (164)
Q Consensus       123 a~~L~~~I  130 (164)
                      +..-.-.+
T Consensus       250 a~~~Lg~~  257 (452)
T 3e4b_A          250 SWVSLAQL  257 (452)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.87  E-value=0.034  Score=44.65  Aligned_cols=70  Identities=10%  Similarity=-0.002  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCC--CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPP--LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~--~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .+.+++++.+.   ..++..++++.+++.+...   +++  +....++++||..++..|+|++|+.+++++|++.|..
T Consensus        94 ~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           94 WSLIQQSEILF---AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            44677788877   5667788888888876531   122  3445678889999999999999999999999998863

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.63  E-value=0.11  Score=44.97  Aligned_cols=91  Identities=9%  Similarity=0.028  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176           28 DIIAGCEREVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        28 ~~l~~~e~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      ..+..+++.....   ..+..++.+..-+|..++   ..++...|+..++..+..  +| . -..+..++..+.-.|+++
T Consensus       255 ~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l---~~gd~d~A~~~l~rAl~L--n~-s-~~a~~llG~~~~~~G~~~  327 (372)
T 3ly7_A          255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL---VKGKTDESYQAINTGIDL--EM-S-WLNYVLLGKVYEMKGMNR  327 (372)
T ss_dssp             HHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CC-C-HHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhc--CC-C-HHHHHHHHHHHHHCCCHH
Confidence            4455555555543   445567777777777776   568999999999999986  23 2 356678899999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHH
Q 031176          105 KSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +|...++++++++|..+...-
T Consensus       328 eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          328 EAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcChHHH
Confidence            999999999999999976543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.58  E-value=0.044  Score=37.51  Aligned_cols=47  Identities=23%  Similarity=0.191  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHhhcc---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           86 QREKLYLLAVGYYRTGE---YAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        86 ~rd~lY~LAlg~~kl~~---Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      .-+.++-+|.+.|..++   .++|+..++++|+++|+|..+.-+.-.+.-
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~   54 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF   54 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence            34999999999987776   899999999999999999999998855533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.52  E-value=0.053  Score=48.46  Aligned_cols=90  Identities=6%  Similarity=-0.011  Sum_probs=73.3

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCCC
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..++.+.++-+.-+|++-+-.. .+.+++++.++..+..  +| +.-.||+|-.....+++ .|++|++|++++++.+|+
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~-~~~~~el~~~~k~l~~--d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEA--DE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             HhCCCCHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHhh--cc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence            4456688999999999985432 2578999999999996  44 44599999999999999 999999999999999999


Q ss_pred             cHHHHHHHHHHHhHh
Q 031176          120 WRQALGLKKTVEDRI  134 (164)
Q Consensus       120 n~Qa~~L~~~Ie~~~  134 (164)
                      |..|=.-+..+-.++
T Consensus       177 n~saW~~r~~ll~~l  191 (567)
T 1dce_A          177 NYSSWHYRSCLLPQL  191 (567)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHhh
Confidence            998766666654443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.38  E-value=0.2  Score=42.04  Aligned_cols=31  Identities=26%  Similarity=0.272  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP  118 (164)
                      ..++++|.+++..|+|++|++.+.+.|...|
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~  131 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDE  131 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence            3345555555555555555555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.046  Score=44.53  Aligned_cols=70  Identities=17%  Similarity=0.127  Sum_probs=57.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP  118 (164)
                      ...+..++|..+.   +.+++.+|+.++++++..   ..+....-+++..++..|..+|+|++|+.++++++.+.|
T Consensus       134 ~~~~~~~la~~~~---~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          134 KHSLSIKLATLHY---QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            4677888888888   778899999999887653   233456678999999999999999999999999998754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.98  E-value=0.081  Score=44.52  Aligned_cols=71  Identities=17%  Similarity=0.055  Sum_probs=52.6

Q ss_pred             hHHHHHH--HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhh------
Q 031176           47 SESIMRL--SWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEI------  116 (164)
Q Consensus        47 ~~~~F~y--A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~------  116 (164)
                      ..+..++  ||..+... .+.++.++.+++++...   ++.  ....+|.   ++.++|+|++|.+.++.+++.      
T Consensus       174 d~~l~~Laea~v~l~~g-~~~~q~A~~~f~El~~~---~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~  246 (310)
T 3mv2_B          174 NEMILNLAESYIKFATN-KETATSNFYYYEELSQT---FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQ  246 (310)
T ss_dssp             HHHHHHHHHHHHHHHHT-CSTTTHHHHHHHHHHTT---SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh---CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            3445555  56677554 34688999999998775   333  3355566   899999999999999999987      


Q ss_pred             ----CCCcHHHH
Q 031176          117 ----APDWRQAL  124 (164)
Q Consensus       117 ----eP~n~Qa~  124 (164)
                          +|+|..+.
T Consensus       247 k~~~~p~~~~~L  258 (310)
T 3mv2_B          247 KENAVLYKPTFL  258 (310)
T ss_dssp             CHHHHSSHHHHH
T ss_pred             cccCCCCCHHHH
Confidence                47787665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.68  E-value=0.18  Score=42.61  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=62.5

Q ss_pred             CHHHHHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh
Q 031176           26 DRDIIAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSR--QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT  100 (164)
Q Consensus        26 ~~~~l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~--~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl  100 (164)
                      -...+...+...++. .-++.  ...+..-++-..-+-.  -.++.++|.++|+..+.-  +|...-+.+|+.|-.+++.
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHh
Confidence            345666666666666 33433  1223333332222111  136899999999999986  4544469999999999885


Q ss_pred             -cchHHHHHHHHHHHhhCCC
Q 031176          101 -GEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus       101 -~~Y~~A~~~~~~lL~~eP~  119 (164)
                       ++|+.|+++++++|+..|.
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGG
T ss_pred             cCCHHHHHHHHHHHHcCCCC
Confidence             9999999999999998877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.66  E-value=0.16  Score=42.13  Aligned_cols=79  Identities=11%  Similarity=0.021  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc--chHHHHHHHHHHHhhCCCcHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG--EYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~--~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ...+.|..+++++...+  ++++++.+.++..  +| ..-..|+|-......++  +|++++++++.+|+.+|.|.++=.
T Consensus        33 ~~~~~~~~a~~~~~e~s--~~aL~~t~~~L~~--nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~  107 (306)
T 3dra_A           33 KQIMGLLLALMKAEEYS--ERALHITELGINE--LA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN  107 (306)
T ss_dssp             HHHHHHHHHHHHTTCCS--HHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCC--HHHHHHHHHHHHH--Cc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence            44566777777654333  5799999999986  34 55589999999999999  999999999999999999999877


Q ss_pred             HHHHHH
Q 031176          126 LKKTVE  131 (164)
Q Consensus       126 L~~~Ie  131 (164)
                      -+..|-
T Consensus       108 ~R~~iL  113 (306)
T 3dra_A          108 YRQLII  113 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.45  E-value=0.3  Score=40.45  Aligned_cols=85  Identities=11%  Similarity=0.026  Sum_probs=65.5

Q ss_pred             CCCchHHHHHHHHHH----HhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH--HHHHHHHHHHhh
Q 031176           43 DKQKSESIMRLSWAL----VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA--KSRQILEQCLEI  116 (164)
Q Consensus        43 ~~~s~~~~F~yA~aL----i~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~--~A~~~~~~lL~~  116 (164)
                      ++.+.++-..-.|.|    -+.....+..+.+++++..+..  +| ..-.+|+|-.....+++.|+  +++.+++++++.
T Consensus        99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A           99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence            444666666667888    4322125678999999999986  45 44589999999999999999  999999999999


Q ss_pred             CCCcHHHHHHHHHH
Q 031176          117 APDWRQALGLKKTV  130 (164)
Q Consensus       117 eP~n~Qa~~L~~~I  130 (164)
                      +|.|-.|=.=+..+
T Consensus       176 d~~N~sAW~~R~~l  189 (306)
T 3dra_A          176 DLKNNSAWSHRFFL  189 (306)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            99998776544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.42  E-value=0.39  Score=42.82  Aligned_cols=88  Identities=15%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             CCCchHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc--chHHHHHHHHHH
Q 031176           43 DKQKSESIMRLSWALVHSRQ-------AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG--EYAKSRQILEQC  113 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~-------~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~--~Y~~A~~~~~~l  113 (164)
                      ++...++-..-.++|.+-..       ...++++++.++..+..  +| ..-.+||+-+....+++  +|++|+.+++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~  135 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NP-KSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence            33455666666777764322       12389999999999986  44 55699999999999999  669999999999


Q ss_pred             HhhCCCcHHHHHHHHHHHhH
Q 031176          114 LEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       114 L~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      |+++|.|-.|=.-+..+-..
T Consensus       136 l~~d~~N~~aW~~R~~~l~~  155 (567)
T 1dce_A          136 LEADERNFHCWDYRRFVAAQ  155 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhccccccHHHHHHHHHHH
Confidence            99999998877665555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=94.36  E-value=0.085  Score=42.30  Aligned_cols=68  Identities=13%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ----QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~----~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      +..+..++..+   ..++..+++..+++.+...  |..    .-.+++.++..+...|+|++|+.++++++++.|..
T Consensus        15 ~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   86 (373)
T 1hz4_A           15 EFNALRAQVAI---NDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   86 (373)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH---HCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence            44455555555   4556777777777766642  211    12366777788888888888888888887776543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.00  E-value=0.57  Score=39.44  Aligned_cols=89  Identities=6%  Similarity=-0.029  Sum_probs=70.7

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhCCC
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE-YAKSRQILEQCLEIAPD  119 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~-Y~~A~~~~~~lL~~eP~  119 (164)
                      ..++.+.++-..-.|+|-+-.. .+..+.++.++.++..  +| ..-.+|+|-.....+++. +++++.|++.+++.+|.
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~--dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEA--DE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             HhCCCCHHHHHHHHHHHhccCc-ccHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            4456688888888999986543 2578899999999986  45 445899999999999999 59999999999999999


Q ss_pred             cHHHHHHHHHHHhH
Q 031176          120 WRQALGLKKTVEDR  133 (164)
Q Consensus       120 n~Qa~~L~~~Ie~~  133 (164)
                      |..|=.=+..+-..
T Consensus       178 N~SAW~~R~~ll~~  191 (331)
T 3dss_A          178 NYSSWHYRSCLLPQ  191 (331)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99876554444333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.98  E-value=0.25  Score=41.70  Aligned_cols=56  Identities=20%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhCCCc
Q 031176           63 AEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRT-----GEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl-----~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ...+..+..+|+..+.-  ||. ...-++-+|++.|++.     |+.++|+++.+++|++.|++
T Consensus       176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            45788999999999996  343 2456999999999996     99999999999999999976

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.75  E-value=0.58  Score=39.82  Aligned_cols=60  Identities=7%  Similarity=-0.033  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           68 RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        68 ~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      +++++.+.++..  +| ..-.+|+|-......++ +|++++.+++.+|+.+|.|-++=.-+..+
T Consensus        72 ~AL~lt~~~L~~--nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           72 RALELTEIIVRM--NP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            355555555543  22 22345555555555555 35555555555555555555544433333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.62  E-value=0.88  Score=38.26  Aligned_cols=90  Identities=8%  Similarity=0.033  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh-------
Q 031176           28 DIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT-------  100 (164)
Q Consensus        28 ~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl-------  100 (164)
                      ++|.-+++...   .++.+..+=..-.|.+-+...  ..++.++.....+..  +| ....+|+|.+....++       
T Consensus       128 ~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~--~p-~N~SAW~~R~~ll~~l~~~~~~~  199 (331)
T 3dss_A          128 RELELCARFLE---ADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITR--NF-SNYSSWHYRSCLLPQLHPQPDSG  199 (331)
T ss_dssp             HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHHSCCC---
T ss_pred             HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhhhccccc
Confidence            45555544443   344455555555777765443  257888999998886  34 5569999999999998       


Q ss_pred             -------cchHHHHHHHHHHHhhCCCcHHHHH
Q 031176          101 -------GEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus       101 -------~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                             +.|++++.+++.++.++|+|+-+=.
T Consensus       200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence                   6799999999999999999998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.60  E-value=0.086  Score=45.85  Aligned_cols=68  Identities=4%  Similarity=-0.064  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176           63 AEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV  130 (164)
Q Consensus        63 ~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I  130 (164)
                      .+++.+|+.+++..+...     .+.+..-..+.+||..|..+|+|++|+.+++++|++     -|+++.......-+
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            345677788877766531     122345578899999999999999999999999975     57777665544444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=93.47  E-value=0.19  Score=44.34  Aligned_cols=69  Identities=7%  Similarity=-0.056  Sum_probs=51.4

Q ss_pred             ChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV  130 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I  130 (164)
                      ..+++.+|+.+++..+...     .+.+..-..+.+||..|..+|+|++|..+++++|++     -|+++.......-+
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5667788888888776532     122345678899999999999999999999999976     57777655544433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=92.55  E-value=2.2  Score=36.20  Aligned_cols=85  Identities=5%  Similarity=-0.070  Sum_probs=64.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh-c-chHHHHHHHHHHHhhCCCcHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT-G-EYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl-~-~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ...+-..-.+.|.+-.  ...+++++.++.++..  +| ..-..|++-.....++ + ++++++.+++.+|+.+|.|-.+
T Consensus        87 ~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~--nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A  161 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQ--NL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT  161 (349)
T ss_dssp             CHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHT--TC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred             hHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence            3444444455665322  2588999999999986  45 4559999999999998 8 9999999999999999999988


Q ss_pred             HHHHHHHHhHhh
Q 031176          124 LGLKKTVEDRIA  135 (164)
Q Consensus       124 ~~L~~~Ie~~~~  135 (164)
                      =.-+.-+-..+.
T Consensus       162 W~~R~wvl~~l~  173 (349)
T 3q7a_A          162 WAYLHWLYSHFS  173 (349)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            776665554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=91.58  E-value=0.29  Score=42.18  Aligned_cols=69  Identities=12%  Similarity=-0.059  Sum_probs=51.7

Q ss_pred             ChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV  130 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I  130 (164)
                      +.+++.+++++++..+...     .+.+..-..+.+||..|..+|+|++|+.+++++|++     -|+++........+
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            3457788999999988642     112344578899999999999999999999999976     46777665544444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.32  E-value=1.4  Score=44.54  Aligned_cols=65  Identities=12%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .++.+-++||.++.   +.+.+++||+-++..        +..+.++.++-.+.++|+|++|.+|+.++.+.+|+.
T Consensus      1103 n~p~vWsqLAKAql---~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQL---QKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             CCHHHHHHHHHHHH---hCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence            46899999999999   888999999987541        235889999999999999999999999999999775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.23  E-value=1.8  Score=36.57  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH-------HhhCCCcHHH
Q 031176           51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC-------LEIAPDWRQA  123 (164)
Q Consensus        51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l-------L~~eP~n~Qa  123 (164)
                      -.++-+++   ..++..+++..++.++..  +| -.-+.+..|-.++++.|++.+|++.++++       |-++|. +.-
T Consensus       175 ~~~~~~~l---~~g~~~~a~~~l~~~~~~--~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l  247 (388)
T 2ff4_A          175 TAKAEAEI---ACGRASAVIAELEALTFE--HP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTL  247 (388)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHH
T ss_pred             HHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHH
Confidence            34555556   456677888899998885  45 34468999999999999999999987765       346774 555


Q ss_pred             HHHHHHHHh
Q 031176          124 LGLKKTVED  132 (164)
Q Consensus       124 ~~L~~~Ie~  132 (164)
                      ++|.+.|-.
T Consensus       248 ~~l~~~il~  256 (388)
T 2ff4_A          248 RALNERILR  256 (388)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            666666544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.14  E-value=0.66  Score=31.66  Aligned_cols=66  Identities=14%  Similarity=0.103  Sum_probs=41.7

Q ss_pred             cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176           60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus        60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |++.+-..+|++++...+..+. ..+..++     +-     -|.+|++++..+++.+|+...-..+++.|.+.+.|
T Consensus        10 ~~~~~~~~~Ai~lv~~Ave~D~-~g~y~eA-----l~-----lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~R   75 (83)
T 2w2u_A           10 SAQVMLEEMARKYAINAVKADK-EGNAEEA-----IT-----NYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRR   75 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-TTCHHHH-----HH-----HHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHH-hccHHHH-----HH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4455667788888777665311 1111122     11     14456666777888899988877888888887766

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.73  E-value=1.3  Score=34.31  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176           49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSS---PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI  116 (164)
Q Consensus        49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~---~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~  116 (164)
                      +.|.-.-.|+-...-+.+.---.+|-.+...+.   .|...-+.++|+|-++|..++|.+|..+++++|+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            445555566633333444433444444333211   12334568999999999999999999999998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=88.92  E-value=4.2  Score=34.96  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=23.1

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           92 LLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      -+|+.+.-.|++++|+.+++++|+++|+.
T Consensus       282 alal~~l~~gd~d~A~~~l~rAl~Ln~s~  310 (372)
T 3ly7_A          282 IKAVSALVKGKTDESYQAINTGIDLEMSW  310 (372)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Confidence            35555666799999999999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.71  E-value=0.46  Score=44.52  Aligned_cols=49  Identities=18%  Similarity=0.132  Sum_probs=41.3

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC  113 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l  113 (164)
                      ++++.+-|+++=...+.-  .|..+ ++||+||.+|.++|+|++|+-.++.+
T Consensus       349 ~K~~~elAL~~Ak~AV~~--aPseF-~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          349 NRGDYELALGVSNTSTEL--ALDSF-ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccCcHHHHHHHHHHHHhc--Cchhh-HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            356778899988888874  57777 99999999999999999999876665

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.33  E-value=0.93  Score=36.28  Aligned_cols=59  Identities=24%  Similarity=0.314  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH--hhC
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL--EIA  117 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL--~~e  117 (164)
                      +-+..+...|-   ..+++.++.-+|..        .+.--..||=+++|+++++|.+|..+++.+|  +++
T Consensus        34 eY~lL~~I~Ly---yngEY~R~Lf~L~~--------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd   94 (242)
T 3kae_A           34 EYRMLMSIVLY---LNGEYTRALFHLHK--------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVE   94 (242)
T ss_dssp             CTHHHHHHHHH---HTTCHHHHHHHHHT--------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred             HHHhhhhhhhh---hcchHhHHHHHHHh--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55566666666   66777777777643        2336789999999999999999999999999  444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.20  E-value=4.5  Score=33.53  Aligned_cols=75  Identities=13%  Similarity=0.261  Sum_probs=59.6

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH-HHHHHHHhHhhhhhH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL-GLKKTVEDRIAKDGV  139 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~-~L~~~Ie~~~~~dGl  139 (164)
                      +.+....+++.+++-++.  .|.+. +.--.|---++=.|++++|.+=++.+.+++|+..... .++++|...+.|..+
T Consensus         9 ~~g~L~~al~~~~~~VR~--~P~da-~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v   84 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKA--SPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   84 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHh--CCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence            566788899999999996  45443 5555566667889999999999999999999987665 559999888887443

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=87.15  E-value=2.3  Score=29.35  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176           60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus        60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      |.+.....+|++++...+..+. ..+     |--|+-+     |.+|..++-.+++.+|+...-..|+..+.+.+.|
T Consensus         6 ~~~~~~l~~Ai~lv~~Ave~D~-~g~-----y~eAl~~-----Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~R   71 (93)
T 1wfd_A            6 SGQDSDSTAAVAVLKRAVELDA-ESR-----YQQALVC-----YQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDR   71 (93)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHH-TTC-----HHHHHHH-----HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHH-hCC-----HHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            4566677788888877666411 111     2222222     4566677888888899888777788888777666

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=86.19  E-value=1.7  Score=32.95  Aligned_cols=55  Identities=16%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---chHHHHHHHHHHHhhC-CC
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG---EYAKSRQILEQCLEIA-PD  119 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~---~Y~~A~~~~~~lL~~e-P~  119 (164)
                      .++++....+-+++-+..  ++ ...+..|.+|++..+.+   ++.++...++.+++.+ |+
T Consensus        10 ~~~~l~~~~~~y~~e~~~--~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~   68 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAA--GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE   68 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHT--TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred             CHHHHHHHHHHHHHHHcc--CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc
Confidence            566777777777776664  23 45699999999999988   8889999999999999 73

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=84.60  E-value=17  Score=30.71  Aligned_cols=35  Identities=11%  Similarity=0.150  Sum_probs=28.5

Q ss_pred             HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ..||.++|..|-.+++++|++.|....+..-++.+
T Consensus       216 ~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil  250 (325)
T 3mv2_A          216 QHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIK  250 (325)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            47999999999999999999999876555544444

>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}

Probab=83.01  E-value=2.1  Score=23.42  Aligned_cols=6  Identities=33%  Similarity=0.700  Sum_probs=3.4

Q ss_pred             HHHHhh
Q 031176          157 AAALAR  162 (164)
Q Consensus       157 ~~a~~r  162 (164)
                      +.+|||
T Consensus        22 g~~ms~   27 (27)
T 2lbg_A           22 GSAMSR   27 (27)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            446764

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=82.85  E-value=1.6  Score=34.02  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=34.0

Q ss_pred             CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .+.-.|+||++.-+.-.++|.+|.++...+++.-|..
T Consensus        11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            4667899999999999999999999999999999865

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=82.44  E-value=18  Score=30.58  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=27.2

Q ss_pred             HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ..||.++|..|-.+++++|++.|....+..-++.
T Consensus       207 ~a~K~KNy~tAa~fArrLLel~p~~~~~~qArki  240 (320)
T 3mkr_B          207 LFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKI  240 (320)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4799999999999999999999976644443333

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=81.81  E-value=3.3  Score=37.78  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .|.+.-.|-.++..|+|.-|.+.++.++..+|+|++|+.|+...-+++.
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~  497 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  497 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            4677888899999999999999999999999999999999987755543

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.58  E-value=3.3  Score=27.92  Aligned_cols=60  Identities=10%  Similarity=0.138  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176           66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus        66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      ..+||+++...+..+. .-+..+     |+-     -|.+|++++..+++.+|+...-..+++.|.+.+.|
T Consensus         8 ~~~Ai~lv~~Ave~D~-~g~y~e-----Al~-----lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~R   67 (83)
T 2v6y_A            8 EDMARKYAILAVKADK-EGKVED-----AIT-----YYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHH-----HHH-----HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-hccHHH-----HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            5577777776655311 111111     221     13456666777888899888877888888887766

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=80.87  E-value=3.1  Score=32.10  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------C----------------CCCchHHHHHHHHHHHHhhcchH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------S----------------PPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~----------------~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      .++.+.+|-++.   ..++.++|...+++.+...      .                +-...-|+-|-+|.+|.+++++.
T Consensus        63 ~~~l~~ladalf---~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           63 YQLLVYHADSLF---HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            357788888888   6778888888888854311      0                00112389999999999999999


Q ss_pred             HHHHHHHH
Q 031176          105 KSRQILEQ  112 (164)
Q Consensus       105 ~A~~~~~~  112 (164)
                      .|+...+.
T Consensus       140 ~Ai~~Le~  147 (167)
T 3ffl_A          140 DAIAILDG  147 (167)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=80.43  E-value=1.3  Score=29.90  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176           86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIA  117 (164)
Q Consensus        86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e  117 (164)
                      ..|| |.|+..+|+.++|..|....+.+|+..
T Consensus         5 a~dc-~~lG~~~~~~~~y~~A~~W~~~Al~~~   35 (104)
T 2v5f_A            5 AEDC-FELGKVAYTEADYYHTELWMEQALRQL   35 (104)
T ss_dssp             HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHccchHHHHHHHHHHHHhh
Confidence            3566 689999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	3e-34
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (287), Expect = 3e-34
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 2/105 (1%)

Query: 33  CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYL 92
             ++V          +S    +W L+ S    D + G+ +L      +    ++RE LY 
Sbjct: 21  LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYY 78

Query: 93  LAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
           L +G Y+ GEY+ +++ ++   E   + +Q   LK  VED+I K+
Sbjct: 79  LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE 123

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 8e-16
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 43  DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE 102
                 +    +W LV +R  +D+++GI +LE  L   S   +QR+ ++ LAVG YR  E
Sbjct: 29  GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKE 87

Query: 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
           Y K+ + +   L+  P   QA  L++ ++  + KD
Sbjct: 88  YEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 62  QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121
           QA D +                      L LL+  +++     +S       ++  P   
Sbjct: 11  QAGDFEAAERHCMQLWRQEP---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67

Query: 122 QAL 124
           +A 
Sbjct: 68  EAY 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	100.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.95
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.88
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.88
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.59
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.57
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.47
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.19
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.18
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.17
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.87
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.67
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.6
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.58
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.54
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.52
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.51
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.4
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.29
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.08
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.03
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.49
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.89
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.73
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.39
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.51
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	91.46
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.44
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	85.98

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-36  Score=225.23  Aligned_cols=111  Identities=24%  Similarity=0.430  Sum_probs=106.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176           25 CDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA  104 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~  104 (164)
                      .++++|..++++|.++.++.++.+++|+|||+|+||+++.|+++||.+|+++++.  +|.++||||||||+||||+|+|+
T Consensus        13 l~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~   90 (124)
T d2pqrb1          13 LYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYS   90 (124)
T ss_dssp             CCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHH
Confidence            7899999999999998668889999999999999999999999999999999985  67889999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhh
Q 031176          105 KSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD  137 (164)
Q Consensus       105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~d  137 (164)
                      +|++|++++|+++|+|+||+.|++.|+++|+||
T Consensus        91 ~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~kd  123 (124)
T d2pqrb1          91 MAKRYVDTLFEHERNNKQVGALKSMVEDKIQKE  123 (124)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999997

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=159.60  Aligned_cols=111  Identities=26%  Similarity=0.476  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHhhcc
Q 031176           25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP-LQQREKLYLLAVGYYRTGE  102 (164)
Q Consensus        25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~-~~~rd~lY~LAlg~~kl~~  102 (164)
                      ++++++.++|+.|++. ..++.+++++|||||+|++|++.+++++||++|+.++..  +| +...++||+||++|+++|+
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--~~~~~~~~~~~~Lg~~y~~~g~   87 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE   87 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHHHhh
Confidence            4688999999999999 777789999999999999999999999999999999985  23 3456899999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhh
Q 031176          103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKD  137 (164)
Q Consensus       103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~d  137 (164)
                      |++|+++++++|+++|+|.+|+.|+..|+++++||
T Consensus        88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ke  122 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD  122 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999986

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=78.95  Aligned_cols=88  Identities=22%  Similarity=0.259  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      |++..|+.+....   +.++..+|+..+++.++..    .......+++++||.+|+++|+|++|+.+++++|+++|+|.
T Consensus         4 saddc~~lG~~~~---~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           4 TAEDSFELGKVAY---TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            6788999999999   7788999999999887631    12234579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhh
Q 031176          122 QALGLKKTVEDRIAK  136 (164)
Q Consensus       122 Qa~~L~~~Ie~~~~~  136 (164)
                      ++..=...+++.+.|
T Consensus        81 ~a~~Nl~~~~~~l~k   95 (95)
T d1tjca_          81 RANGNLKYFEYIMAK   95 (95)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            998777777766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.5e-09  Score=73.13  Aligned_cols=95  Identities=14%  Similarity=0.004  Sum_probs=81.1

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL  110 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~  110 (164)
                      .+...|.+. .-++.++.+..++|+++.   ..++..+|++.++..++.  +|. ..++||++|.++.++|+|++|+.++
T Consensus        21 eAi~~~~~al~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--~p~-~~~~~~~~g~~~~~~~~~~~A~~~~   94 (117)
T d1elwa_          21 DALQCYSEAIKLDPHNHVLYSNRSAAYA---KKGDYQKAYEDGCKTVDL--KPD-WGKGYSRKAAALEFLNRFEEAKRTY   94 (117)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchhhhhccccccc---ccccccccchhhhhHHHh--ccc-hhhHHHHHHHHHHHccCHHHHHHHH
Confidence            445556665 556678899999999999   678889999999999986  454 4589999999999999999999999


Q ss_pred             HHHHhhCCCcHHHHHHHHHHHh
Q 031176          111 EQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       111 ~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +.+++++|+|.++......++.
T Consensus        95 ~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          95 EEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999888777664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.88  E-value=6e-09  Score=76.13  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      .+..|.|.++.   ..++..++++.++..+..  +|. ...+||.+|.+|+++|+|++|+.+++.+|+++|+|..+....
T Consensus        68 ~~~~Nla~~~~---~l~~~~~Al~~~~~al~~--~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          68 SCNLNLATCYN---KNKDYPKAIDHASKVLKI--DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHhhHHHHHH---Hhcccchhhhhhhccccc--cch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46678999999   566788999999999986  454 458999999999999999999999999999999999999998


Q ss_pred             HHHHhHhhh
Q 031176          128 KTVEDRIAK  136 (164)
Q Consensus       128 ~~Ie~~~~~  136 (164)
                      ..+..++.+
T Consensus       142 ~~~~~kl~~  150 (153)
T d2fbna1         142 ELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.5e-08  Score=73.60  Aligned_cols=98  Identities=10%  Similarity=0.054  Sum_probs=81.3

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|.+. .-++.+....+++|.+++   ..++..+|+..++..+..  +| ...+.|+.+|.+++.+|+|++|..+++
T Consensus        29 A~~~~~~al~~~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~kal~~--~p-~~~~a~~~~g~~~~~~g~~~eA~~~~~  102 (159)
T d1a17a_          29 AIKFYSQAIELNPSNAIYYGNRSLAYL---RTECYGYALGDATRAIEL--DK-KYIKGYYRRAASNMALGKFRAALRDYE  102 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhhccccchhhhhhhhhhHHHHH---hccccchHHHHHHHHHHH--cc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44445555 446678999999999999   667889999999999986  34 556999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176          112 QCLEIAPDWRQALGLKKTVEDRIAK  136 (164)
Q Consensus       112 ~lL~~eP~n~Qa~~L~~~Ie~~~~~  136 (164)
                      ++++++|+|.++......+...+.+
T Consensus       103 ~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_         103 TVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999998877666554433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.80  E-value=2.2e-08  Score=73.54  Aligned_cols=85  Identities=20%  Similarity=0.253  Sum_probs=71.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      .....+++|.++.   ..++..+||..++..+..  +| ...++||.+|.+|+++|+|++|+.+++++|+++|+|..+..
T Consensus        76 ~~~~~~nla~~~~---~~~~~~~Ai~~~~~al~~--~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1          76 ALSCVLNIGACKL---KMSDWQGAVDSCLEALEI--DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTT--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHH---hhcccchhhhhhhhhhhh--hh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3455677788877   556888999999999986  45 45599999999999999999999999999999999999988


Q ss_pred             HHHHHHhHhhh
Q 031176          126 LKKTVEDRIAK  136 (164)
Q Consensus       126 L~~~Ie~~~~~  136 (164)
                      ....+..++.+
T Consensus       150 ~l~~~~~~l~~  160 (169)
T d1ihga1         150 ELLKVKQKIKA  160 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88877776553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-08  Score=74.71  Aligned_cols=83  Identities=13%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      .+..++|.+++   ..++..+|+..++..+..  +| ....++|.+|.+|+++|+|++|+.+++.+++++|+|..+....
T Consensus        63 ~~~~nla~~y~---k~~~~~~A~~~~~~al~~--~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l  136 (170)
T d1p5qa1          63 ASHLNLAMCHL---KLQAFSAAIESCNKALEL--DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL  136 (170)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhhcccccchhhhhhhc--cc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34556788888   578899999999999996  45 4459999999999999999999999999999999999999988


Q ss_pred             HHHHhHhhh
Q 031176          128 KTVEDRIAK  136 (164)
Q Consensus       128 ~~Ie~~~~~  136 (164)
                      ..+..++.+
T Consensus       137 ~~~~~~~~~  145 (170)
T d1p5qa1         137 AVCQQRIRR  145 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=9.7e-08  Score=69.35  Aligned_cols=100  Identities=15%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-
Q 031176           32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQ-------AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE-  102 (164)
Q Consensus        32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~-------~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~-  102 (164)
                      .+.+.|+.. .-++.++++.++++.++....+       .+..++||+.++..++.  +| +..+++|+|+.+|..+|+ 
T Consensus        15 ~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P-~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          15 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DP-KKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cc-hhhHHHhhHHHHHHHcccc
Confidence            345555555 5677799999999999985432       35568899999999986  45 556999999999998764 


Q ss_pred             ----------hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          103 ----------YAKSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       103 ----------Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                                |++|.++++++|+++|+|..+..-.....+..
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence                      89999999999999999999888777666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.70  E-value=5.3e-08  Score=71.71  Aligned_cols=82  Identities=12%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      .+..|.|.|+.   ..++..+||+.++..+..  +| ....++|.+|.+|..+|+|++|+.+++++|+++|+|.++....
T Consensus        65 ~~~~Nla~~~~---~l~~~~~Ai~~~~~al~l--~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          65 AAFLNLAMCYL---KLREYTKAVECCDKALGL--DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhHHHHHH---Hhhhcccchhhhhhhhhc--cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44557788888   578899999999999986  45 4459999999999999999999999999999999999998887


Q ss_pred             HHHHhHhh
Q 031176          128 KTVEDRIA  135 (164)
Q Consensus       128 ~~Ie~~~~  135 (164)
                      ..+..++.
T Consensus       139 ~~~~~~~~  146 (168)
T d1kt1a1         139 FMCQKKAK  146 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=8.7e-08  Score=69.87  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=69.4

Q ss_pred             HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176           33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE  111 (164)
Q Consensus        33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~  111 (164)
                      +...|.+. ..++.++.+.+++|.++.   ..++.++|+..++..+..  +| +.-++||+||.+|+++|+|++|+.+++
T Consensus        23 Ai~~~~kal~~~p~~~~~~~~lg~~y~---~~~~~~~Ai~~~~~al~l--~p-~~~~a~~~lg~~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          23 AAACYGRAITRNPLVAVYYTNRALCYL---KMQQPEQALADCRRALEL--DG-QSVKAHFFLGQCQLEMESYDEAIANLQ   96 (201)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTS--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHhHHHHHh---hhhhhhhhhHHHHHHHHh--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34445555 456678999999999999   677889999999999985  45 445899999999999999999999999


Q ss_pred             HHHhhCCCcH
Q 031176          112 QCLEIAPDWR  121 (164)
Q Consensus       112 ~lL~~eP~n~  121 (164)
                      ++|+++|++.
T Consensus        97 ~al~l~p~~~  106 (201)
T d2c2la1          97 RAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHhCcccH
Confidence            9999998654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.7e-07  Score=68.21  Aligned_cols=82  Identities=10%  Similarity=0.016  Sum_probs=69.3

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      |+.+..-+.+-.++   ..++..+|+..++..+..  +| ....+|+++|.+|.++|+|++|+.+++++|+++|+|.++.
T Consensus         2 ~~a~~l~~~Gn~~~---~~g~~~~Ai~~~~kal~~--~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~   75 (201)
T d2c2la1           2 PSAQELKEQGNRLF---VGRKYPEAAACYGRAITR--NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   75 (201)
T ss_dssp             CCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             hhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHH
Confidence            56667778888888   788999999999999986  45 4569999999999999999999999999999999999876


Q ss_pred             HHHHHHHh
Q 031176          125 GLKKTVED  132 (164)
Q Consensus       125 ~L~~~Ie~  132 (164)
                      --+-.+-.
T Consensus        76 ~~lg~~~~   83 (201)
T d2c2la1          76 FFLGQCQL   83 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.5e-07  Score=68.75  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ...+......+.+++++.   ..++..+|++.++..+..  +| +..+.++.||..+.++|+|++|+.+++++|+++|+|
T Consensus       299 ~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~  372 (388)
T d1w3ba_         299 RLCPTHADSLNNLANIKR---EQGNIEEAVRLYRKALEV--FP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF  372 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHH---TTTCHHHHHHHHHHHTTS--CT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred             ccCCccchhhhHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            334556777888888887   566788899999888875  34 445888899999999999999999999999999988


Q ss_pred             HHHHH
Q 031176          121 RQALG  125 (164)
Q Consensus       121 ~Qa~~  125 (164)
                      ..+..
T Consensus       373 ~~a~~  377 (388)
T d1w3ba_         373 ADAYS  377 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.53  E-value=1.8e-07  Score=64.70  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ..+..|+.+..+.   +.++..+|+..+++.+..  +| +.-++|++||..+.++++|++|..+.+++|+++|+|.++.-
T Consensus        15 ~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          15 YHENPMEEGLSML---KLANLAEAALAFEAVCQK--EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             GCSCHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHH---HHhhhHHHHHHHhhhccc--cc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence            3466789999999   678899999999999996  45 44599999999999999999999999999999999987765


Q ss_pred             HHHH
Q 031176          126 LKKT  129 (164)
Q Consensus       126 L~~~  129 (164)
                      ..-.
T Consensus        89 ~la~   92 (112)
T d1hxia_          89 ALAV   92 (112)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2.8e-07  Score=69.35  Aligned_cols=72  Identities=14%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA  123 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa  123 (164)
                      ..++.|+.++++.   ..++..+|++.++..+..  +| +..+++|.+|.+|.++|+|++|+.+++++|+++|++..+
T Consensus        36 ~a~~~~~~G~~y~---~~g~~~~A~~~~~~al~l--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  107 (259)
T d1xnfa_          36 RAQLLYERGVLYD---SLGLRALARNDFSQALAI--RP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA  107 (259)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHH---HCCCHHHHHHHHHHhhcc--CC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhh
Confidence            3445555566665   345556666666666654  23 334666666666666666666666666666666666544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.4e-07  Score=71.86  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=33.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      .+++.+++|+++.   ..++..+|++.++..+..  +| +..+++|.||..|+++|+|++|+++++++|+++|+|..
T Consensus       205 ~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         205 DYLLWNKLGATLA---NGNQSEEAVAAYRRALEL--QP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             cccchhhhhhccc---ccccchhHHHHHHHHHHH--hh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            4445555555554   333444555555554443  12 22345555555555555555555555555555555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.3e-06  Score=65.60  Aligned_cols=94  Identities=14%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176           34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ  112 (164)
Q Consensus        34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~  112 (164)
                      ...|.+. .-++..+.+.+++|.++.   ..++..+|++.++..+..  +| ...+.++.++..|+++|+|++|+.+++.
T Consensus        57 ~~~~~~al~l~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          57 RNDFSQALAIRPDMPEVFNYLGIYLT---QAGNFDAAYEAFDSVLEL--DP-TYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCCHHHHhhhchHHH---HHHHHHHhhhhhhHHHHH--Hh-hhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444444 446668899999999999   677888999999999986  34 4558999999999999999999999999


Q ss_pred             HHhhCCCcHHHHHHHHHHHhH
Q 031176          113 CLEIAPDWRQALGLKKTVEDR  133 (164)
Q Consensus       113 lL~~eP~n~Qa~~L~~~Ie~~  133 (164)
                      +++++|++..+.........+
T Consensus       131 al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         131 FYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhccccHHHHHHHHHHHHH
Confidence            999999998776555544433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.8e-06  Score=59.80  Aligned_cols=76  Identities=12%  Similarity=0.241  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      .++-+..++   +.++.++||..++..+..  +|.. -++|+++|.+|.++|+|++|+.+++++++++|+|..+.--+-.
T Consensus         6 l~~~g~~~~---~~g~~~eAi~~~~~al~~--~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~   79 (117)
T d1elwa_           6 LKEKGNKAL---SVGNIDDALQCYSEAIKL--DPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCHHHHHHHHHHHHhc--CCcc-hhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHH
Confidence            345677777   677899999999999986  4544 5899999999999999999999999999999999987654444


Q ss_pred             HH
Q 031176          130 VE  131 (164)
Q Consensus       130 Ie  131 (164)
                      +-
T Consensus        80 ~~   81 (117)
T d1elwa_          80 AL   81 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.9e-07  Score=69.62  Aligned_cols=74  Identities=20%  Similarity=0.285  Sum_probs=58.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      +.+..|+.|..++   ..++..+|+..++..++.  +| ...++|++||..+.++|+|++|+.+++++++++|++..+..
T Consensus        18 ~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   91 (323)
T d1fcha_          18 DHPQPFEEGLRRL---QEGDLPNAVLLFEAAVQQ--DP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM   91 (323)
T ss_dssp             TCSSHHHHHHHHH---HTTCHHHHHHHHHHHHHS--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence            4555788888888   667788888888888875  34 34588888888888888888888888888888888876544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.4e-06  Score=59.50  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +-.+.   +.++.++|++.++..+..  +| ...++|+++|..|.++|+|++|..+++++|+++|++.++...+-.+-.
T Consensus        17 gn~~~---~~~~y~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          17 ANDYF---KAKDYENAIKFYSQAIEL--NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHH---HcCCHHHHHHHhhhcccc--ch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            44555   677899999999999996  45 556999999999999999999999999999999999988766555433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.19  E-value=4.3e-06  Score=57.47  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      ..+.+.|.+. ..++.++++.+.++.++.   ..++..+|+..++..+..  +| ...++++.||+.|.++|++++|+++
T Consensus        33 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~la~~y~~~g~~~~A~~~  106 (112)
T d1hxia_          33 AEAALAFEAVCQKEPEREEAWRSLGLTQA---ENEKDGLAIIALNHARML--DP-KDIAVHAALAVSHTNEHNANAALAS  106 (112)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcccccccchhhhhhhhhhh---hhhhHHHhhccccccccc--cc-ccccchHHHHHHHHHCCCHHHHHHH
Confidence            3345555555 556668999999999998   566788999999999986  45 4459999999999999999999999


Q ss_pred             HHHHH
Q 031176          110 LEQCL  114 (164)
Q Consensus       110 ~~~lL  114 (164)
                      +++.|
T Consensus       107 l~~~l  111 (112)
T d1hxia_         107 LRAWL  111 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.2e-05  Score=61.37  Aligned_cols=97  Identities=14%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176           30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ  108 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~  108 (164)
                      ...+.+.|.+. ..++.++++.+.+|.++.   ..++..+|+..++..+..  +| ...+.++.||..|.++|+|++|+.
T Consensus        15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_          15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQ--NP-LLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHhhhhcccccccc
Confidence            34556666666 455667889999999998   567888999999998886  34 445899999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHHHHHh
Q 031176          109 ILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus       109 ~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      +++.+++..|.+............
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          89 HYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccc
Confidence            999999999998876655554433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3.3e-06  Score=63.32  Aligned_cols=73  Identities=11%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      .++++.+.|+++.+..   ..++..+|++.++..+..  +| +..+++|+++++|+++|+|++|+..++++|+..|.|.
T Consensus        32 ~~~~~~~~~nlG~~~~---~~g~~~~A~~~~~kAl~l--dp-~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          32 QDPHSRICFNIGCMYT---ILKNMTEAEKAFTRSINR--DK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             SSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             CCCCHHHHHHHHHHHH---HcCCchhHHHHHHHHHHH--hh-hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            3457789999999998   777899999999999986  45 5568999999999999999999999999999888774

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3e-06  Score=59.51  Aligned_cols=67  Identities=18%  Similarity=0.326  Sum_probs=56.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176           52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL  124 (164)
Q Consensus        52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~  124 (164)
                      +.+-.+.   ..++..+|++.++..+..  +|. ..++++++|.+|+++|+|++|+.+++++|+++|++..+.
T Consensus         9 ~~G~~~~---~~~~y~~Ai~~y~~al~~--~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           9 ELGNDAY---KKKDFDTALKHYDKAKEL--DPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHH---HTTCHHHHHHHHHHHHHH--CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHH---HcCCHHHHHHHHHHHHHh--Ccc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence            3445555   567889999999999986  454 458999999999999999999999999999999987643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.5e-05  Score=58.27  Aligned_cols=75  Identities=5%  Similarity=0.017  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      .++-+....   ..++.+.|++.++++ .    +++ .+.||+++..|+++|+|++|+++++++|+++|++..+-..+-.
T Consensus         8 l~~~g~~~~---~~~d~~~Al~~~~~i-~----~~~-~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           8 LWNEGVLAA---DKKDWKGALDAFSAV-Q----DPH-SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHTS-S----SCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHH---HCCCHHHHHHHHHhc-C----CCC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            455566666   778899999998763 2    233 3689999999999999999999999999999999987776666


Q ss_pred             HHhH
Q 031176          130 VEDR  133 (164)
Q Consensus       130 Ie~~  133 (164)
                      +-.+
T Consensus        79 ~~~~   82 (192)
T d1hh8a_          79 LYYQ   82 (192)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.8e-05  Score=62.00  Aligned_cols=79  Identities=6%  Similarity=-0.045  Sum_probs=66.3

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+.++.++.+|++.   ..++..+|++.++..+..  +|.+ -++|++++..+.++++|++|+.+++.+|+++|.|
T Consensus       106 ~~~p~~~~a~~~~~~~~~---~l~~~~eAl~~~~kal~~--dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVE---WLRDPSQELEFIADILNQ--DAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHH---HHTCCTTHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHhhhhHHHHHhHHHH---hhccHHHHHHHHhhhhhh--hhcc-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            445668899999999998   566777899999999886  4544 5899999999999999999999999999999998


Q ss_pred             HHHHH
Q 031176          121 RQALG  125 (164)
Q Consensus       121 ~Qa~~  125 (164)
                      ..+-.
T Consensus       180 ~~a~~  184 (315)
T d2h6fa1         180 NSVWN  184 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            86643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.7e-05  Score=52.64  Aligned_cols=98  Identities=9%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc------hHHHHHHHHHHHHhhcch
Q 031176           31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ------QREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~------~rd~lY~LAlg~~kl~~Y  103 (164)
                      ..+..-|.+. ..++.+..+.+++|.++.   ..++..+|+..++..+.-  +|..      .-.+++.++..+..+++|
T Consensus        21 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~lg~~~~~~~~~   95 (128)
T d1elra_          21 DTALKHYDKAKELDPTNMTYITNQAAVYF---EKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKEEKY   95 (128)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHhHHHHHH---HcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            3445556565 556668899999999999   778899999999987763  2211      124777888888999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLKKTVEDRI  134 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~  134 (164)
                      ++|+++++..|..+|+......|. .+++.+
T Consensus        96 ~~A~~~~~kal~~~~~~~~~~~l~-~~~k~l  125 (128)
T d1elra_          96 KDAIHFYNKSLAEHRTPDVLKKCQ-QAEKIL  125 (128)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHH-HHHHHH
Confidence            999999999999998765544443 345444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00016  Score=52.60  Aligned_cols=73  Identities=7%  Similarity=0.065  Sum_probs=52.1

Q ss_pred             ChhHHHHHHHHHHHHhhCCCC-C-----------CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSP-P-----------LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~-~-----------~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ..+++.+|++.++..+..... +           .....++.++|.+|+++|+|++|..+++.+|+++|+|..+.-.+-.
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  104 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE  104 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHH
Confidence            455666677666665542100 0           1123556789999999999999999999999999999988776666


Q ss_pred             HHhHh
Q 031176          130 VEDRI  134 (164)
Q Consensus       130 Ie~~~  134 (164)
                      +-..+
T Consensus       105 ~~~~~  109 (170)
T d1p5qa1         105 AHLAV  109 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            54443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.63  E-value=5.8e-05  Score=54.02  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCC---CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPP---LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP  118 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~---~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP  118 (164)
                      ..+..+++.++.   +.++..++++.+++.+.-.     ..+   .....++|.++.+|.++|+|++|+.+++++|++.|
T Consensus        55 a~~~~nlg~~~~---~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          55 AFCHAGLAEALA---GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            356778899988   4556666666666655310     011   12344789999999999999999999999999977


Q ss_pred             Cc----HHHHHHHHHHHhHhhhhh
Q 031176          119 DW----RQALGLKKTVEDRIAKDG  138 (164)
Q Consensus       119 ~n----~Qa~~L~~~Ie~~~~~dG  138 (164)
                      +.    .+...+.+.+.+.+.+-|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1         132 ERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             HCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHHcC
Confidence            65    466888888888877644

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.0004  Score=49.83  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176           85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV  130 (164)
Q Consensus        85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I  130 (164)
                      ....+++++|..|.++|+|++|+.+++++|+++|+|..+.--+-.+
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  120 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG  120 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHH
Confidence            4567889999999999999999999999999999998775444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=5.5e-05  Score=59.32  Aligned_cols=70  Identities=13%  Similarity=-0.016  Sum_probs=56.8

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH-H--HHHHHhHh
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG-L--KKTVEDRI  134 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~-L--~~~Ie~~~  134 (164)
                      ..++..++++.+.+.+..   .+..-++++++|..+.++|+|++|+++++.+++++|.+.++-. |  +-.+|+.+
T Consensus       254 ~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~  326 (334)
T d1dcea1         254 VLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV  326 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence            457888999999998875   3456699999999999999999999999999999999887733 3  34445543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.58  E-value=0.00028  Score=50.42  Aligned_cols=45  Identities=20%  Similarity=0.133  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      .+++++|.+|+++|+|++|+++++.+|+++|+|.++.-.+-.+-.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~  112 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM  112 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH
Confidence            477889999999999999999999999999999876555444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9.7e-05  Score=51.86  Aligned_cols=69  Identities=17%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh---hcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR---TGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k---l~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      +++-.++   ..++..+|.+..+..+..  +| ...+++|++|.+.++   .+++.+|++.++.+|+.+|.+.++..+
T Consensus         4 ~l~n~~~---~~~~l~~Ae~~Y~~aL~~--~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~   75 (122)
T d1nzna_           4 AVLNELV---SVEDLLKFEKKFQSEKAA--GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV   75 (122)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHH--SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             HHHHHhc---CHHHHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHH
Confidence            3455666   788999999999999996  34 456999999999986   667888999999999999988775443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.52  E-value=0.00039  Score=50.17  Aligned_cols=46  Identities=17%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED  132 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~  132 (164)
                      ..++.++|.+|+++++|++|+.+++.+|+++|+|..+.-.+-.+-.
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~  109 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  109 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999988766555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00039  Score=55.11  Aligned_cols=82  Identities=9%  Similarity=-0.002  Sum_probs=67.3

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .-++....+.++.+-+|...  ..+++++++.++..+..  +| ..-++|++++..+.++|+|++|+.+++.+++++|.|
T Consensus        71 ~lnP~~~~a~~~r~~~l~~l--~~~~~eal~~~~~al~~--~p-~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          71 ELNAANYTVWHFRRVLLKSL--QKDLHEEMNYITAIIEE--QP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHCCCChHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHH--HH-hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            33455778888888887632  34688999999999986  34 556999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 031176          121 RQALGLK  127 (164)
Q Consensus       121 ~Qa~~L~  127 (164)
                      ..+-.=+
T Consensus       146 ~~a~~~~  152 (315)
T d2h6fa1         146 YHAWQHR  152 (315)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            8775433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.40  E-value=0.0008  Score=52.37  Aligned_cols=91  Identities=8%  Similarity=-0.020  Sum_probs=72.6

Q ss_pred             hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      ..++.+.++.+..+|++..- ...+..+++..++..+..  +|....-+++.++..+...+++++|+.+++.+++++|+|
T Consensus       101 ~~~pk~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         101 RVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             HhCCCcHHHHHHhhHHHHHh-ccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            44666889999999999843 455688999999998885  454543445677799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHh
Q 031176          121 RQALGLKKTVEDRI  134 (164)
Q Consensus       121 ~Qa~~L~~~Ie~~~  134 (164)
                      ..+...+..+-..+
T Consensus       178 ~~a~~~l~~~~~~~  191 (334)
T d1dcea1         178 YSSWHYRSCLLPQL  191 (334)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99877666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.37  E-value=0.00034  Score=55.22  Aligned_cols=65  Identities=11%  Similarity=0.248  Sum_probs=57.2

Q ss_pred             ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176           62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT  129 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~  129 (164)
                      ..++..+|++.+++.++.  +| ...++++.|+..+++.|+|++|+..++++++++|++.++..+...
T Consensus         8 ~~G~l~eAl~~l~~al~~--~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~   72 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   72 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            467899999999999996  34 556999999999999999999999999999999999887765443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=0.00063  Score=50.43  Aligned_cols=77  Identities=18%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH-------HhhCCC
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC-------LEIAPD  119 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l-------L~~eP~  119 (164)
                      .++..+++-++.   ..++..+++..++..+..  +| ..-++|+.|..+++++|++++|++.++++       |-++|+
T Consensus        67 ~~a~~~la~~~~---~~g~~~~Al~~~~~al~~--~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          67 VLAHTAKAEAEI---ACGRASAVIAELEALTFE--HP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHH---HCCCchHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            467788888888   667888999999999996  45 55699999999999999999999999988       779997


Q ss_pred             cHHHHHHHHHH
Q 031176          120 WRQALGLKKTV  130 (164)
Q Consensus       120 n~Qa~~L~~~I  130 (164)
                      . .-..|.+.|
T Consensus       141 ~-~l~~l~~~i  150 (179)
T d2ff4a2         141 P-TLRALNERI  150 (179)
T ss_dssp             H-HHHHHHHHH
T ss_pred             H-HHHHHHHHH
Confidence            4 455555554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.08  E-value=0.00069  Score=48.15  Aligned_cols=59  Identities=14%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh----------cchHHHHHHHHHHHhhCCCcHHHHH
Q 031176           64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT----------GEYAKSRQILEQCLEIAPDWRQALG  125 (164)
Q Consensus        64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl----------~~Y~~A~~~~~~lL~~eP~n~Qa~~  125 (164)
                      ...++|+..++..+..  +| +.-++++.++.+++++          +.+++|..+++++|+++|+|..+--
T Consensus        11 ~~fe~A~~~~e~al~~--~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKS--NP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             HHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHhh--CC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            3567899999999986  45 4559999999999965          5558999999999999999987754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00045  Score=51.28  Aligned_cols=96  Identities=8%  Similarity=-0.132  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHH----hcC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176           29 IIAGCEREVAEA----NDD-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY  103 (164)
Q Consensus        29 ~l~~~e~~y~~~----~~~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y  103 (164)
                      ++.+||..+..-    ..| .+.....|.-|..|.+..-..+...+.-+...-..-   ....-+++..++-.+.++|+|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l---~~~~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATAL---VEDKVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHH---HHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCc
Confidence            466676666543    222 223455677777776543222222111111111110   123458899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHHH
Q 031176          104 AKSRQILEQCLEIAPDWRQALGLK  127 (164)
Q Consensus       104 ~~A~~~~~~lL~~eP~n~Qa~~L~  127 (164)
                      ++|+.+++++|+++|.|.++-...
T Consensus        84 ~~Al~~~~~al~~~P~~e~~~~~l  107 (179)
T d2ff4a2          84 SAVIAELEALTFEHPYREPLWTQL  107 (179)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccHHHHHHH
Confidence            999999999999999999765543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.96  E-value=0.00058  Score=48.50  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=51.8

Q ss_pred             hHHHHHH--HHHHHhcCChhHHHHHHHHHHHHhhCCC-CCC--------chHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176           47 SESIMRL--SWALVHSRQAEDVQRGIAMLEASLANSS-PPL--------QQREKLYLLAVGYYRTGEYAKSRQILEQCLE  115 (164)
Q Consensus        47 ~~~~F~y--A~aLi~S~~~~d~~~gi~lLe~ll~~~~-~~~--------~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~  115 (164)
                      .++.+.+  ++..+   ..++.++||+.+++.+.... .|.        ....|++.+|.+|.++|+|++|+.+++.+|+
T Consensus         7 a~a~~~l~~g~~~~---~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           7 VGAYLALSDAQRQL---VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            3455555  55655   55678889999998876311 111        1246899999999999999999999999999


Q ss_pred             hCCC
Q 031176          116 IAPD  119 (164)
Q Consensus       116 ~eP~  119 (164)
                      +.|.
T Consensus        84 ~~~~   87 (156)
T d2hr2a1          84 YFNR   87 (156)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            8764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0015  Score=48.40  Aligned_cols=70  Identities=13%  Similarity=0.094  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ----QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW  120 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~----~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n  120 (164)
                      .++.....|-..+   ..++.++|+.++++.+..  .|..    .-.+++.++..|+.+|+|++|+.+++.++++.|.+
T Consensus        11 ~ae~~~lrA~~~~---~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          11 HAEFNALRAQVAI---NDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            3455555677777   677889999999998885  2322    23578899999999999999999999999987654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.011  Score=43.40  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~  119 (164)
                      .....+++|.+++   ..++..+++..++..+..   .+.++..-++++.+|..|+++|++++|+++++++|++.+.
T Consensus       250 ~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         250 LQGQWRNIARAQI---LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             GHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            3456777888888   556778888888886632   1334456688999999999999999999999999987543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0064  Score=50.83  Aligned_cols=80  Identities=10%  Similarity=0.069  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH-H
Q 031176           48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG-L  126 (164)
Q Consensus        48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~-L  126 (164)
                      .+.++++..+.   +.++..+|+..++..+..  +| +..+.+++||+.+...|++.+|..++.++|.+.|....|.. |
T Consensus       153 ~~~~~LG~l~~---~~~~~~~A~~~y~~A~~l--~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         153 HCLVHLGDIAR---YRNQTSQAESYYRHAAQL--VP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHH---HcccHHHHHHHHHHHHHH--CC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            45566666555   567889999999998886  34 55699999999999999999999999999999999988754 4


Q ss_pred             HHHHHhH
Q 031176          127 KKTVEDR  133 (164)
Q Consensus       127 ~~~Ie~~  133 (164)
                      ..+.++.
T Consensus       227 ~~~~~~~  233 (497)
T d1ya0a1         227 QKALSKA  233 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0071  Score=46.36  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             ChhHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           62 QAEDVQRGIAMLEASLA---NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        62 ~~~d~~~gi~lLe~ll~---~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      ..++..+|++.++..+.   ..+.+.....+++.+|..|.++|+|++|+.+++++++..|.+.
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            45788889988887653   2234445567899999999999999999999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.42  E-value=0.0024  Score=47.74  Aligned_cols=82  Identities=10%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             CchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhCCC
Q 031176           45 QKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIAPD  119 (164)
Q Consensus        45 ~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~eP~  119 (164)
                      ..+++.|+++..+... ..+.|.++|+..++..... +    ..+.+|.|+..|++    .+|+++|.++.+++....  
T Consensus       176 g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--  248 (265)
T d1ouva_         176 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--  248 (265)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--
T ss_pred             cccccccchhhhcccCcccccchhhhhhhHhhhhcc-c----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--
Confidence            3688999999888753 2356899999999998885 3    25899999999998    669999999999997775  


Q ss_pred             cHHHHHHHHHHHhH
Q 031176          120 WRQALGLKKTVEDR  133 (164)
Q Consensus       120 n~Qa~~L~~~Ie~~  133 (164)
                      +..|......++.+
T Consensus       249 ~~~A~~~l~~l~~~  262 (265)
T d1ouva_         249 AKGACDILKQLKIK  262 (265)
T ss_dssp             CHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHHHHHH
Confidence            55566666655544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.051  Score=41.53  Aligned_cols=89  Identities=10%  Similarity=-0.066  Sum_probs=45.5

Q ss_pred             HHHHHHHHH-hc-CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176           32 GCEREVAEA-ND-DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI  109 (164)
Q Consensus        32 ~~e~~y~~~-~~-~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~  109 (164)
                      .+...|.+. .. .+.+....+.||..+.   ..++..++..+++..+..  .|.+....|-.++-...+.+++++|++.
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~---~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEE---SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHH---hcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            344455554 21 2334445555555554   233455566666665553  2333333444444555566666666666


Q ss_pred             HHHHHhhCCCcHHHHH
Q 031176          110 LEQCLEIAPDWRQALG  125 (164)
Q Consensus       110 ~~~lL~~eP~n~Qa~~  125 (164)
                      ++++++..|.+...--
T Consensus       157 ~~~al~~~~~~~~~~~  172 (308)
T d2onda1         157 FKKAREDARTRHHVYV  172 (308)
T ss_dssp             HHHHHTSTTCCTHHHH
T ss_pred             HHHHHHhCCCcHHHHH
Confidence            6666666666554433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0028  Score=41.67  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                      |-+|.|+..+|+.|+|.+|..+.+++|++.|.+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~   39 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGE   39 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh
Confidence            4468999999999999999999999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.73  E-value=0.025  Score=38.71  Aligned_cols=81  Identities=7%  Similarity=0.086  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHH
Q 031176           32 GCEREVAEANDDKQKSESIMRLSWALVHSR-QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKS  106 (164)
Q Consensus        32 ~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A  106 (164)
                      +.-+-|.+... ..++.++|++++...... .+.|..+|+++++..... ++    .++.|.|++.|.+    .+|+++|
T Consensus        41 ~a~~~~~~aa~-~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~----~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          41 KLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-ND----QDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHhhhhc-ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-Cc----chHHHHHHHHHHcCCccCCCHHHH
Confidence            33444544421 236788888888877532 356788999999888775 32    4788899998887    5789999


Q ss_pred             HHHHHHHHhhCC
Q 031176          107 RQILEQCLEIAP  118 (164)
Q Consensus       107 ~~~~~~lL~~eP  118 (164)
                      +++++++-+...
T Consensus       115 ~~~~~~Aa~~G~  126 (133)
T d1klxa_         115 VKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            999888877653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.71  E-value=0.055  Score=41.96  Aligned_cols=89  Identities=12%  Similarity=0.006  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC----------------------------
Q 031176           30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS----------------------------   80 (164)
Q Consensus        30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~----------------------------   80 (164)
                      +......|.+. ...+.+.+...+++-.|+   ..++..+|+..|+..+..+                            
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~---~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLC---IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence            34455566666 556667888888888888   6677778888887776642                            


Q ss_pred             ----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176           81 ----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR  121 (164)
Q Consensus        81 ----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~  121 (164)
                          -.++.....++..|..+.+.|++++|...++++++..|++.
T Consensus        89 ~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          89 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                01134446667778888888999999999999999888865

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.71  E-value=0.054  Score=41.41  Aligned_cols=86  Identities=12%  Similarity=0.101  Sum_probs=58.7

Q ss_pred             HHHHHHHHHH-hcCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhhcchHHHH
Q 031176           31 AGCEREVAEA-NDDK-QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRTGEYAKSR  107 (164)
Q Consensus        31 ~~~e~~y~~~-~~~~-~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl~~Y~~A~  107 (164)
                      ..++..|.+. ...+ ....+-..|+..+.   ..+++.+++++++..+..  .| ...+.+...|.. ++..|+++.|+
T Consensus       116 ~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~---~~~~~~~ar~i~~~al~~--~~-~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFAR---RAEGIKSGRMIFKKARED--AR-TRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHH---HHHCHHHHHHHHHHHHTS--TT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHH---HcCChHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHhccCHHHHH
Confidence            3445566665 3222 23345567777777   567788899999988875  34 334566666655 44568999999


Q ss_pred             HHHHHHHhhCCCcHH
Q 031176          108 QILEQCLEIAPDWRQ  122 (164)
Q Consensus       108 ~~~~~lL~~eP~n~Q  122 (164)
                      +.++.+|+..|++..
T Consensus       190 ~i~e~~l~~~p~~~~  204 (308)
T d2onda1         190 KIFELGLKKYGDIPE  204 (308)
T ss_dssp             HHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhhhhHH
Confidence            999999999999863

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.013  Score=48.84  Aligned_cols=77  Identities=8%  Similarity=-0.036  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL  126 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L  126 (164)
                      .....+++....   ..++...++.-....+..     ....|+++|+..+...++|++|+.++++++++.|++..+-.-
T Consensus       120 ~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~  191 (497)
T d1ya0a1         120 RVKSSQLGIISN---KQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ  191 (497)
T ss_dssp             --------------------------CCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHH
T ss_pred             HHHHHHhHHHHH---hCCCHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHH
Confidence            344444444443   445555566655554442     346899999999999999999999999999999999877665


Q ss_pred             HHHHH
Q 031176          127 KKTVE  131 (164)
Q Consensus       127 ~~~Ie  131 (164)
                      .-.|-
T Consensus       192 Lg~~~  196 (497)
T d1ya0a1         192 LAILA  196 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.39  E-value=0.024  Score=41.93  Aligned_cols=63  Identities=13%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhh
Q 031176           46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEI  116 (164)
Q Consensus        46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~  116 (164)
                      +|++.|++++.+.   +.+|..+|++.++..... +    ..+++|+|+..|+.    .++|.+|..+++...+.
T Consensus         1 ~p~~~~~lG~~~~---~~~d~~~A~~~~~kAa~~-g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~   67 (265)
T d1ouva_           1 DPKELVGLGAKSY---KEKDFTQAKKYFEKACDL-K----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL   67 (265)
T ss_dssp             CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence            3567777777777   456777788888777664 2    24778888888776    66777777777765543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.037  Score=42.11  Aligned_cols=82  Identities=6%  Similarity=0.055  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176           47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP----LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ  122 (164)
Q Consensus        47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~----~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q  122 (164)
                      ..+..++|..+.   ..+++.+|++.++.++......    ......++.+++.+...++++.|.++++++++++|....
T Consensus       158 ~~~~~~la~~~~---~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         158 NKCFIKCADLKA---LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             hhHHHHHHHHHH---HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            566788899988   5668999999999988752111    122456778899999999999999999999999997553


Q ss_pred             ---HHHHHHHHH
Q 031176          123 ---ALGLKKTVE  131 (164)
Q Consensus       123 ---a~~L~~~Ie  131 (164)
                         +.-+..+++
T Consensus       235 sre~~~l~~l~~  246 (290)
T d1qqea_         235 SRESNFLKSLID  246 (290)
T ss_dssp             ---HHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence               444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.51  E-value=0.4  Score=32.17  Aligned_cols=77  Identities=12%  Similarity=0.039  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcch
Q 031176           29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEY  103 (164)
Q Consensus        29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y  103 (164)
                      +..+.-+-|.+. ..+  .+.++++++     +..+.+.++++..++..... +    ..++.|.|+..|..    ..|+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~-----~~~~~~~~~a~~~~~~aa~~-g----~~~a~~~Lg~~y~~g~~~~~d~   75 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLV-----SNSQINKQKLFQYLSKACEL-N----SGNGCRFLGDFYENGKYVKKDL   75 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHH-----TCTTSCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhc-----cccccCHHHHHHHHhhhhcc-c----chhhhhhHHHhhhhccccchhh
Confidence            455555556665 333  345566654     34667889999999998875 3    24899999999987    6789


Q ss_pred             HHHHHHHHHHHhhC
Q 031176          104 AKSRQILEQCLEIA  117 (164)
Q Consensus       104 ~~A~~~~~~lL~~e  117 (164)
                      ++|.++++++-+..
T Consensus        76 ~~A~~~~~~aa~~g   89 (133)
T d1klxa_          76 RKAAQYYSKACGLN   89 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhccC
Confidence            99999999987764

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.2  Score=31.97  Aligned_cols=66  Identities=12%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH-HHHHHHHHhHhhh
Q 031176           60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA-LGLKKTVEDRIAK  136 (164)
Q Consensus        60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa-~~L~~~Ie~~~~~  136 (164)
                      |+....+.+|++++...+..+. ..+-.+++     -     -|.+|.+++..+++.+|+|.+. ..|++.|...+.|
T Consensus         2 s~~~~~l~~A~~l~~~Av~~D~-~~~y~~A~-----~-----~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~R   68 (77)
T d1wr0a1           2 SSTSPNLQKAIDLASKAAQEDK-AGNYEEAL-----Q-----LYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR   68 (77)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH-TTCCSSHH-----H-----HHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHH-cCCHHHHH-----H-----HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            4567788899999988777521 11222332     2     2678888899999999998874 5688888877766

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.33  Score=32.04  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh-hh
Q 031176           60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK-DG  138 (164)
Q Consensus        60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~-dG  138 (164)
                      |....+...|++++...+..+.      .--|-.|+-+     |.+|++++-.+++.+|+...-..|++.|.+.+.| +-
T Consensus         6 s~~~~~~~~A~~l~~~Av~~D~------~g~y~eA~~~-----Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~   74 (93)
T d1wfda_           6 SGQDSDSTAAVAVLKRAVELDA------ESRYQQALVC-----YQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN   74 (93)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHH------TTCHHHHHHH-----HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455567788888877776411      1113344433     5677888888899999999999999999988877 44


Q ss_pred             HH
Q 031176          139 VI  140 (164)
Q Consensus       139 li  140 (164)
                      |.
T Consensus        75 LK   76 (93)
T d1wfda_          75 IK   76 (93)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.98  E-value=0.85  Score=38.38  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176           87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA  135 (164)
Q Consensus        87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~  135 (164)
                      .|.+--.|-.++..|||.-|.+.++.++..+|+|++|+.|+..+-+++.
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            6888889999999999999999999999999999999999988876654