Citrus Sinensis ID: 031181

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEEEEEEHHccccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAATAYAAvltprvpstttvkvksshcfalpclpprsstppfsssikqvsesrrfpllqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVgainsvplLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Flexible Loop (DISEMBL)
maatayaavltprvpstttvkVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLqvrassseetstvdaDELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Low Complexity Region (SEG)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLpprsstppfsssIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVpllpklleliglgYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Disordered region (IsUnstruct)
*****YAAVLTPRVPSTTTVKVKSSHCFALPCL*******************************************FSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSS*******************
Disordered Region (DISOPRED)
*************************************************************************DELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAG**
Disordered Region (DISEMBL)
MAATAYAAVLTPRVP*********SHCFALPCLPPR**************ESRRFPLLQV***********DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Disordered Region (DISPRO)
*******************************************************PL***R*S*****STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAG**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	yes	no	0.957	0.957	0.652	3e-54
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.506	0.477	0.385	2e-13
Q119Z5	881	Glutamate--tRNA ligase OS	no	no	0.414	0.077	0.414	4e-08

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 134/167 (80%), Gaps = 10/167 (5%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           PLLPK++EL+GLGYTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 55/83 (66%)

Query: 81  KEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYL 140
           +E W+ V++K  +       +VA+W S+ ++ AI+ +PL+P +LEL+G+GYTGWF Y+ L
Sbjct: 91  QEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNL 150

Query: 141 LFKSSRKELATDIEALKKKIAGT 163
           +FK  R+ L   +++  K I G+
Sbjct: 151 VFKPDREALFEKVKSTYKDILGS 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=gltX PE=3 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 95  LYGGGAIVAVWLS--STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATD 152
           L+G  A+V +  +  + ++ A++ +P+L  + ELIG+ Y  WFVYRYLL +S+R+EL   
Sbjct: 809 LFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDK 868

Query: 153 IEALKKKIAG 162
           IE +K++I G
Sbjct: 869 IENIKREIFG 878

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
388500696	163	unknown [Lotus japonicus]	0.969	0.975	0.714	8e-58
224067952	155	predicted protein [Populus trichocarpa]	0.865	0.916	0.769	3e-57
255541776	167	Thylakoid membrane phosphoprotein 14 kDa	0.859	0.844	0.767	4e-56
351725951	163	uncharacterized protein LOC100305578 [Gl	0.920	0.926	0.716	5e-56
224130462	151	predicted protein [Populus trichocarpa]	0.865	0.940	0.755	2e-55
118487811	164	unknown [Populus trichocarpa]	0.859	0.859	0.760	9e-55
356560639	153	PREDICTED: uncharacterized protein At4g0	0.878	0.941	0.705	3e-54
356560637	163	PREDICTED: uncharacterized protein At4g0	0.920	0.926	0.691	6e-54
388515303	161	unknown [Medicago truncatula]	0.963	0.981	0.709	8e-53
18411555	164	uncharacterized protein [Arabidopsis tha	0.957	0.957	0.652	1e-52

>gi|388500696|gb|AFK38414.1| unknown [Lotus japonicus]

 Score =  228 bits (580), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 138/168 (82%), Gaps = 9/168 (5%)

Query: 1   MAATAYAAVLTP-RVPSTTTVKVKSSHCFALPCLPPRSSTPP---FSSSIKQVSESRRFP 56
           MAA A + VL P R P+TT +    + C ALP LPPR ST     FS S+K  SESR+  
Sbjct: 1   MAAAAASTVLLPHRFPTTTNI----TRCSALPYLPPRVSTTTTTLFSPSLKHFSESRKPS 56

Query: 57  LLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINS 116
           LLQ RASS +ETS+VD +EL SDLKEKWDAVENKSTV++YGGGA+VAVWLSS +VGAINS
Sbjct: 57  LLQTRASS-DETSSVDTNELISDLKEKWDAVENKSTVIIYGGGALVAVWLSSILVGAINS 115

Query: 117 VPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           VPLLPK++EL+GLGYTGWFVYRYLLFKSSRKELATDIE++KKKIAGTE
Sbjct: 116 VPLLPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIESIKKKIAGTE 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067952|ref|XP_002302615.1| predicted protein [Populus trichocarpa] gi|222844341|gb|EEE81888.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 126/143 (88%), Gaps = 1/143 (0%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLK 81
           +++S C ALPCLPPRSS+  F      +SES RF  LQ+RASSSEE+S VDA+E+F+DLK
Sbjct: 14  IRTSRCSALPCLPPRSSSRSFPIKHVSLSESHRFAPLQIRASSSEESS-VDANEVFTDLK 72

Query: 82  EKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141
           EKWDAVENKSTV+LYGGGAIV VWLSS ++GAINSVPLLPK++EL+GLGYTGWFVYRYLL
Sbjct: 73  EKWDAVENKSTVILYGGGAIVFVWLSSIVIGAINSVPLLPKIMELVGLGYTGWFVYRYLL 132

Query: 142 FKSSRKELATDIEALKKKIAGTE 164
           FKSSRKELATDIE LKKKIAGTE
Sbjct: 133 FKSSRKELATDIEVLKKKIAGTE 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541776|ref|XP_002511952.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223549132|gb|EEF50621.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 125/142 (88%), Gaps = 1/142 (0%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEETSTVDADELFSDLKE 82
           +++ C ALP LPPR S+     SIKQVS SRR  LLQ+RASS EE++ VDA ELF+DLK 
Sbjct: 27  RTTRCSALPYLPPRLSSNSLRPSIKQVSASRRVSLLQIRASS-EESAPVDAGELFTDLKA 85

Query: 83  KWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142
           +WDA+ENKSTV+LYGGGAIVAVWLSS +VGAINSVPLLPK++EL+GLGYTGWFVYRYLLF
Sbjct: 86  RWDALENKSTVVLYGGGAIVAVWLSSIVVGAINSVPLLPKIMELVGLGYTGWFVYRYLLF 145

Query: 143 KSSRKELATDIEALKKKIAGTE 164
           KSSRKELATDIEALKKKIAG+E
Sbjct: 146 KSSRKELATDIEALKKKIAGSE 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725951|ref|NP_001237366.1| uncharacterized protein LOC100305578 [Glycine max] gi|255625961|gb|ACU13325.1| unknown [Glycine max]

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 132/159 (83%), Gaps = 8/159 (5%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+TT V    + C ALP LPPR S   T  FS S+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTTTNV----TRCSALPSLPPRVSNTETTLFSPSLNNFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLE 125
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVLLYGGGAIVA+WLSS +V AINSVPLLPK++E
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLLYGGGAIVAIWLSSILVSAINSVPLLPKIME 124

Query: 126 LIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           L+GLGYTGWFVYRYLLFKSSRKELATDIE+LKKKI GTE
Sbjct: 125 LVGLGYTGWFVYRYLLFKSSRKELATDIESLKKKITGTE 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130462|ref|XP_002320843.1| predicted protein [Populus trichocarpa] gi|222861616|gb|EEE99158.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 129/147 (87%), Gaps = 5/147 (3%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELF 77
           ++++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F
Sbjct: 6   IRATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIF 64

Query: 78  SDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVY 137
           +DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPLLPK+LEL+GLGYTGWFVY
Sbjct: 65  TDLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLLPKILELVGLGYTGWFVY 124

Query: 138 RYLLFKSSRKELATDIEALKKKIAGTE 164
           RYLLFKSSRKELATDIE+LKKKIAGTE
Sbjct: 125 RYLLFKSSRKELATDIESLKKKIAGTE 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487811|gb|ABK95729.1| unknown [Populus trichocarpa]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 128/146 (87%), Gaps = 5/146 (3%)

Query: 23  KSSHCFALPCLPPRSSTPPFSSSIKQVS----ESRRFPLLQVRASSSEETSTVDADELFS 78
           +++ C+ALP LPPRSS+   S  IKQVS    ESRRF   Q RASSSEE S VDA+E+F+
Sbjct: 20  RATRCYALPYLPPRSSSSSQSFPIKQVSLTASESRRFAPFQTRASSSEE-SPVDANEIFT 78

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138
           DLKEKWDAVENKSTV++YGGGA+VAVWLSS ++GA+NSVPLLPK+LEL+GLGYTGWFVYR
Sbjct: 79  DLKEKWDAVENKSTVIIYGGGAVVAVWLSSILIGAVNSVPLLPKILELVGLGYTGWFVYR 138

Query: 139 YLLFKSSRKELATDIEALKKKIAGTE 164
           YLLFKSSRKELATDIE+LKKKIAGTE
Sbjct: 139 YLLFKSSRKELATDIESLKKKIAGTE 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560639|ref|XP_003548598.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 128/156 (82%), Gaps = 12/156 (7%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSEET 68
           +L PR+P+ T V    + C ALP LPPR+S  PFS        SR+  LLQ RA SSEE+
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRASISPFSV-------SRKSSLLQTRA-SSEES 57

Query: 69  STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIG 128
           S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPLLPK++EL+G
Sbjct: 58  SSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLLPKIMELVG 117

Query: 129 LGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           LGYTGWFVYRYLLFKSSRKELATDIE+LKKKI GTE
Sbjct: 118 LGYTGWFVYRYLLFKSSRKELATDIESLKKKITGTE 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560637|ref|XP_003548597.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Glycine max]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/159 (69%), Positives = 129/159 (81%), Gaps = 8/159 (5%)

Query: 9   VLTPRVPSTTTVKVKSSHCFALPCLPPRSS---TPPFSSSIKQVSESRRFPLLQVRASSS 65
           +L PR+P+ T V    + C ALP LPPR +   T    SS+   S SR+  LLQ RA SS
Sbjct: 10  LLPPRIPTATNV----TRCSALPSLPPRGTNTKTTLLLSSLNHFSVSRKSSLLQTRA-SS 64

Query: 66  EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLE 125
           EE+S+VDA+E+F+DLKEKWDA+ENKSTVL YGGGA+VAVWLSS +V AINSVPLLPK++E
Sbjct: 65  EESSSVDANEVFTDLKEKWDALENKSTVLFYGGGALVAVWLSSILVSAINSVPLLPKIME 124

Query: 126 LIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           L+GLGYTGWFVYRYLLFKSSRKELATDIE+LKKKI GTE
Sbjct: 125 LVGLGYTGWFVYRYLLFKSSRKELATDIESLKKKITGTE 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515303|gb|AFK45713.1| unknown [Medicago truncatula]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 117/165 (70%), Positives = 138/165 (83%), Gaps = 7/165 (4%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQV 60
           +AA+A   ++  R+ +TT V    + C ALP LPPR S+ PF    +Q+SESR+F L Q 
Sbjct: 3   VAASAGTVLVPHRLLTTTNV----TRCSALPYLPPRLSSSPFLK--QQLSESRKFSLHQT 56

Query: 61  RASSSEETST-VDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPL 119
           RASSSEETST +D +ELF+DLKEKWDA+ENKSTVLLYGGG +VAVWLSS +VGAINSVPL
Sbjct: 57  RASSSEETSTSLDTNELFTDLKEKWDALENKSTVLLYGGGGLVAVWLSSILVGAINSVPL 116

Query: 120 LPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           LPK++EL+GLGYTGWFVYRYLLFKSSRKELATDI+ALKKKIAGTE
Sbjct: 117 LPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIDALKKKIAGTE 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411555|ref|NP_567210.1| uncharacterized protein [Arabidopsis thaliana] gi|75097110|sp|O04616.1|Y4115_ARATH RecName: Full=Uncharacterized protein At4g01150, chloroplastic; Flags: Precursor gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene product [Arabidopsis thaliana] gi|7267612|emb|CAB80924.1| hypothetical protein [Arabidopsis thaliana] gi|20147123|gb|AAM10278.1| AT4g01150/F2N1_18 [Arabidopsis thaliana] gi|332656587|gb|AEE81987.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 134/167 (80%), Gaps = 10/167 (5%)

Query: 1   MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRS-STPPFSSSIKQVSES--RRFPL 57
           +AA++  AV+ PRVP+ +T       C A+P LPPRS     F+  +K VS +  ++  L
Sbjct: 5   VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query: 58  LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
           L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct: 59  LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query: 118 PLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
           PLLPK++EL+GLGYTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct: 118 PLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.957	0.957	0.562	4.8e-39
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.603	0.512	0.378	1.9e-12
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.609	0.641	0.326	9.4e-11
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.993	0.936	0.205	2.2e-09

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 94/167 (56%), Positives = 115/167 (68%)

Query:     1 MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPL 57
             +AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  L
Sbjct:     5 VAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVEL 58

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV
Sbjct:    59 LKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSV 117

Query:   118 XXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
                          YTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct:   118 PLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 39/103 (37%), Positives = 61/103 (59%)

Query:    62 ASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXX 121
             A  +E+  T  A E  +D+K   D+ +  S +LLYG GAIVA++L+S IV ++ ++    
Sbjct:    93 APQAEDEET-QALEFLNDIK--LDSDKTYS-ILLYGSGAIVALYLTSAIVSSLEAIPLFP 148

Query:   122 XXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164
                      YT WF  RYLLFK +R+EL T +  +KK++ G++
Sbjct:   149 KLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 34/104 (32%), Positives = 55/104 (52%)

Query:    58 LQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117
             L V+AS     S+ D D + S ++  WD  E++  ++  G   IVA+W S  ++ AI+ +
Sbjct:    52 LMVKASGESSDSSTDLD-VVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKL 110

Query:   118 XXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIA 161
                          ++ WF YRYLLFK  R+EL+   + +KK +A
Sbjct:   111 PVISSGFELVGILFSTWFTYRYLLFKPDRQELS---KIVKKSVA 151

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/170 (20%), Positives = 74/170 (43%)

Query:     1 MAATAYAAVLTPRVPST--TTVKVKSSHCFALPCL--XXXXXXXXXXXXIKQVSES---R 53
             ++ ++ + ++  R P +   +    S  C +LP L               +++  +   R
Sbjct:     4 LSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTR 63

Query:    54 RFPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGA 113
                 +    +++ E  T +  E+    +E W+ V++K  +       +VA+W S+ ++ A
Sbjct:    64 ATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISA 123

Query:   114 INSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGT 163
             I+ +             YTGWF Y+ L+FK  R+ L   +++  K I G+
Sbjct:   124 IDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       139   0.00091  102 3  11 22  0.44    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  126 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.07u 0.11s 12.18t   Elapsed:  00:00:00
  Total cpu time:  12.07u 0.11s 12.18t   Elapsed:  00:00:00
  Start:  Fri May 10 14:40:43 2013   End:  Fri May 10 14:40:43 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04616	Y4115_ARATH	No assigned EC number	0.6526	0.9573	0.9573	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.1221.1	hypothetical protein (155 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020518	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.521
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)			•	•					0.520
	gw1.I.6006.1	hypothetical protein (200 aa)			•	•					0.517
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•				•		0.508
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.508
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.506
	gw1.XIII.568.1	SubName- Full=Putative uncharacterized protein; (212 aa)			•						0.506
	gw1.X.3020.1	hypothetical protein (83 aa)			•						0.506
	gw1.VIII.1629.1	hypothetical protein (88 aa)			•						0.506
	gw1.III.1425.1	hypothetical protein (172 aa)			•						0.506

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	1e-37
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	1e-21

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  123 bits (312), Expect = 1e-37
 Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 77  FSDLKEKWDAVENKSTVLLYGGGAI----VAVWLSSTIVGAINSVPLLPKLLELIGLGYT 132
              L   W   E+K    L G GAI    VA+WLS+ ++ AI+S+PLLP LLEL+GLGY+
Sbjct: 1   LKKLPNYWGKFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYS 60

Query: 133 GWFVYRYLLFKSSRKELATDIEALKKKIAG 162
           GWFVYRYLLF   R+EL   I+ LKK+I G
Sbjct: 61  GWFVYRYLLFSEDRQELLAKIQELKKEILG 90

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 85.8 bits (212), Expect = 1e-21
 Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 4/145 (2%)

Query: 22  VKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASSSE---ETSTVDADELFS 78
             S  C +LP LPP       +   K  +  R+     V  ++ E   E  T +  E+  
Sbjct: 23  AASPQCVSLPTLPP-PPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVK 81

Query: 79  DLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138
            ++E WD VE+K  V       +VA+W S+ ++ AI+ +PL+P +LEL+G+GYTGWF Y+
Sbjct: 82  TVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYK 141

Query: 139 YLLFKSSRKELATDIEALKKKIAGT 163
            L+FK  R+ L   I+   K+I G+
Sbjct: 142 NLVFKPDREALIEKIKDTYKEIIGS 166

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.97

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=1.4e-43  Score=286.09  Aligned_cols=138  Identities=35%  Similarity=0.667  Sum_probs=119.9

Q ss_pred             ccccccccccCCCCCC----CCCCCCccccccccCcccceeeeccCC--CCCCccchhHHHHHHHHHHHhccchhhhHHH
Q 031181           23 KSSHCFALPCLPPRSS----TPPFSSSIKQVSESRRFPLLQVRASSS--EETSTVDADELFSDLKEKWDAVENKSTVLLY   96 (164)
Q Consensus        23 ~~~~~~~~p~lp~r~~----~~~~~~~~~~~~~~~~~~~~~~~ass~--~e~ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~   96 (164)
                      ++.+|..||.|||..-    ++++++.||+...++-+    ++|+++  ++.++.+.+|+++++||+||++|||++++++
T Consensus        24 ~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv----~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~~EdK~av~~l   99 (167)
T PLN02777         24 ASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVV----TMATGEAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSL   99 (167)
T ss_pred             cCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHH----HHhccCCCcccccccHHHHHHHHHHHHhhhcchhHHHHH
Confidence            4689999999996332    45668888877666543    346552  3334567789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhcCCC
Q 031181           97 GGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE  164 (164)
Q Consensus        97 g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~~I~G~~  164 (164)
                      ++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||+++|+++|++|+|+.
T Consensus       100 ~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~IlG~s  167 (167)
T PLN02777        100 AFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGSS  167 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999973

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.97  E-value=6.4e-32  Score=198.93  Aligned_cols=85  Identities=54%  Similarity=0.905  Sum_probs=74.5

Q ss_pred             HHHHHHHHhccchhhhH----HHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHH
Q 031181           78 SDLKEKWDAVENKSTVL----LYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDI  153 (164)
Q Consensus        78 ~~lqe~Wd~~e~k~~v~----~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i  153 (164)
                      +++++.|++.++++...    ++++++++++|++.++++|||+||++|++|||||+||++||+||||+|+++||||.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            35566666666655444    44455699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcC
Q 031181          154 EALKKKIAG  162 (164)
Q Consensus       154 ~~lk~~I~G  162 (164)
                      +++|++|+|
T Consensus        82 ~~~k~~i~G   90 (90)
T PF14159_consen   82 QSLKKEILG   90 (90)
T ss_pred             HHHHHHhcC
Confidence            999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00