Citrus Sinensis ID: 031188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccEEEcHHHHHHHHHHHHHccccccccEEEEEEcccccccccccEEccccccccEEEEcccEEEEEccccHHHccccEEEcccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEEEccccccccEEEEcccEEEEEccccHHHEccEEEEEEccccccEEEEEccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MSRSLIQRLAPYFAARLRQNhrllssspsSAAAALNeassspsssespspsldsihMTDNFIKRMKELQASETSDNKAMLRLGVetggcsgfqyafdldykinpddrifekdGVKLVVDNISYDFVKGATVDYVEELIRSAFvvstnpsavggcsckssfmvkq
Flexible Loop (DISEMBL)
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEAssspsssespspslDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFvvstnpsavggcsckssfmvkq
Low Complexity Region (SEG)
MSRSLIQRLAPYFAARLRQNHRllssspssaaaalneassspsssespspslDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ
Disordered region (IsUnstruct)
*********APYFA****************************************************************MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSC********
Disordered Region (DISOPRED)
*********APYFAARLR*************************************HMTDNFIKRMKELQ******NKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFM***
Disordered Region (DISEMBL)
MSRSLIQRLAPYFAARLRQNHRL*****************************DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ
Disordered Region (DISPRO)
***SLIQRLAPYFAARLRQNHR******************************DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8LCY2	158	Iron-sulfur assembly prot	yes	no	0.957	0.993	0.674	5e-55
Q2TBG7	152	Iron-sulfur cluster assem	yes	no	0.804	0.868	0.513	4e-31
Q5R788	154	Iron-sulfur cluster assem	yes	no	0.774	0.824	0.5	1e-30
Q86U28	154	Iron-sulfur cluster assem	yes	no	0.768	0.818	0.496	3e-30
Q9DCB8	154	Iron-sulfur cluster assem	yes	no	0.817	0.870	0.472	5e-29
Q1QES5	126	Iron-sulfur cluster inser	yes	no	0.719	0.936	0.418	8e-21
Q4FVP8	126	Iron-sulfur cluster inser	yes	no	0.719	0.936	0.418	8e-21
Q2S8Y5	117	Iron-sulfur cluster inser	yes	no	0.664	0.931	0.469	5e-20
Q82UQ4	121	Putative iron-sulfur clus	yes	no	0.695	0.942	0.449	6e-20
A1TYH3	110	Iron-sulfur cluster inser	yes	no	0.640	0.954	0.477	8e-20

>sp|Q8LCY2|ISAM2_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2

 Score =  213 bits (541), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 132/163 (80%), Gaps = 6/163 (3%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 1   MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           +SYD VKGAT+DY EELIR+AFVV+ NPSAVGGCSCKSSFMVK
Sbjct: 115 VSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 157

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2TBG7|ISCA2_BOVIN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 93/146 (63%), Gaps = 14/146 (9%)

Query: 19  QNHRLLSSSPSSAAAALNEAS-SSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNK 77
           Q  RLL++S      AL E S SSP + E        IH+TD+ ++R+ E+     ++  
Sbjct: 19  QRSRLLAAS--RGPRALREVSFSSPEAGEG------QIHLTDSCVQRLLEI-----TEGS 65

Query: 78  AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEEL 137
             LRL VE GGCSGFQY F LD  INPDDR+FEK G ++VVD+ S  FVKGA VD+ +EL
Sbjct: 66  EFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVDSDSLAFVKGAHVDFSQEL 125

Query: 138 IRSAFVVSTNPSAVGGCSCKSSFMVK 163
           IRS+F V  NP A  GCSC SSF VK
Sbjct: 126 IRSSFQVLNNPQAQQGCSCGSSFSVK 151

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Bos taurus (taxid: 9913)

>sp|Q5R788|ISCA2_PONAB Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 PE=2 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 5/132 (3%)

Query: 32  AAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG 91
           AA+L   +   +SS SP      I +TD+ ++R+ E+     ++    LRL VE GGCSG
Sbjct: 27  AASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSG 81

Query: 92  FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAV 151
           FQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A 
Sbjct: 82  FQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQ 141

Query: 152 GGCSCKSSFMVK 163
            GCSC SSF +K
Sbjct: 142 QGCSCGSSFSIK 153

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Pongo abelii (taxid: 9601)

>sp|Q86U28|ISCA2_HUMAN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 85/131 (64%), Gaps = 5/131 (3%)

Query: 33  AALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGF 92
           A+L   +   +SS SP      I +TD+ ++R+ E+     ++    LRL VE GGCSGF
Sbjct: 28  ASLGPQARREASSSSPEAGEGQIRLTDSCVQRLLEI-----TEGSEFLRLQVEGGGCSGF 82

Query: 93  QYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVG 152
           QY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  
Sbjct: 83  QYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQ 142

Query: 153 GCSCKSSFMVK 163
           GCSC SSF +K
Sbjct: 143 GCSCGSSFSIK 153

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q9DCB8|ISCA2_MOUSE Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 PE=2 SV=2

 Score =  126 bits (317), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 12/146 (8%)

Query: 18  RQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNK 77
           R++ RLL+  P          SS P + E        I +TD+ ++R+ E+     ++  
Sbjct: 20  RRSGRLLAVFPR-LLTRWETTSSIPEAGEG------QIRLTDSCVQRLLEI-----TEGS 67

Query: 78  AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEEL 137
             LRL VE GGCSGFQY F LD  INPDDR+FE+ G ++VVD+ S  FVKGA VD+ +EL
Sbjct: 68  EFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQEL 127

Query: 138 IRSAFVVSTNPSAVGGCSCKSSFMVK 163
           IRS+F V  NP A  GCSC SSF VK
Sbjct: 128 IRSSFQVLNNPQAQQGCSCGSSFSVK 153

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Mus musculus (taxid: 10090)

>sp|Q1QES5|ERPA_PSYCK Iron-sulfur cluster insertion protein ErpA OS=Psychrobacter cryohalolentis (strain K5) GN=erpA PE=3 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 81/122 (66%), Gaps = 4/122 (3%)

Query: 41  SPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY 100
           +PSSS+   P++  +++TD+  ++++ L+  E  D+  MLR+ V  GGCSGF Y F+   
Sbjct: 9   NPSSSQPVDPTV--LNLTDSAAQKVRRLREEE-GDSNLMLRVYVTGGGCSGFSYGFNFAN 65

Query: 101 KINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
           ++N DD  F+ + V LVVD++SY +++G+TVDY E L  + F+V TNP+A   C C SSF
Sbjct: 66  ELNEDDANFDNNDVTLVVDSLSYQYLQGSTVDYTEGLEGARFIV-TNPNATTTCGCGSSF 124

Query: 161 MV 162
            +
Sbjct: 125 SI 126

Required for insertion of 4Fe-4S clusters for at least IspG.

Psychrobacter cryohalolentis (strain K5) (taxid: 335284)

>sp|Q4FVP8|ERPA_PSYA2 Iron-sulfur cluster insertion protein ErpA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=erpA PE=3 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 81/122 (66%), Gaps = 4/122 (3%)

Query: 41  SPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY 100
           +PSSS+   P++  +++TD+  ++++ L+  E  D+  MLR+ V  GGCSGF Y F+   
Sbjct: 9   NPSSSQPVDPTV--LNLTDSAAQKVRRLREEE-GDSNLMLRVYVTGGGCSGFSYGFNFAN 65

Query: 101 KINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
           ++N DD  F+ + V LVVD++SY +++G+TVDY E L  + F+V TNP+A   C C SSF
Sbjct: 66  ELNEDDANFDNNDVTLVVDSLSYQYLQGSTVDYTEGLEGARFIV-TNPNATTTCGCGSSF 124

Query: 161 MV 162
            +
Sbjct: 125 SI 126

Required for insertion of 4Fe-4S clusters for at least IspG.

Psychrobacter arcticus (strain DSM 17307 / 273-4) (taxid: 259536)

>sp|Q2S8Y5|ERPA_HAHCH Iron-sulfur cluster insertion protein ErpA OS=Hahella chejuensis (strain KCTC 2396) GN=erpA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 71/115 (61%), Gaps = 6/115 (5%)

Query: 48  PSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDR 107
           P+P    I  TDN   ++K L   E +D  + LR+ V  GGCSGFQY F  D  +N DD 
Sbjct: 9   PTP----IIFTDNAAAKVKSLIEDEGNDELS-LRVFVTGGGCSGFQYGFSFDEAVNEDDT 63

Query: 108 IFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           I EKDGV+LVVD++SY ++ GA VD+ E L  + FV+  NP+A   C C SSF +
Sbjct: 64  IVEKDGVRLVVDSLSYQYLVGAEVDFREGLEGAQFVIK-NPNASTTCGCGSSFSI 117

Required for insertion of 4Fe-4S clusters for at least IspG.

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

>sp|Q82UQ4|ERPA_NITEU Putative iron-sulfur cluster insertion protein ErpA OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=erpA PE=3 SV=1

 Score = 96.7 bits (239), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 46  ESPSPSLDSIHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINP 104
           E  S +   ++ TD    ++KEL   E  DN+A+ LR+ V  GGCSGFQY F  D  +N 
Sbjct: 7   EETSAAQPPLNFTDGAASKVKEL--IEEEDNQALKLRVFVSGGGCSGFQYGFTFDEIVNE 64

Query: 105 DDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           DD + EK GVKL+VD++S+ ++ GA +DY E    + FV+  NPSA   C C SSF V
Sbjct: 65  DDFVMEKQGVKLLVDSMSFQYLVGAEIDYQESAQGAQFVIK-NPSAASTCGCGSSFSV 121

Required for insertion of 4Fe-4S clusters.

Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) (taxid: 228410)

>sp|A1TYH3|ERPA_MARAV Iron-sulfur cluster insertion protein ErpA OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=erpA PE=3 SV=1

 Score = 96.3 bits (238), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 69/109 (63%), Gaps = 4/109 (3%)

Query: 55  IHMTDNFIKRMKEL-QASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           +  TDN + +++EL +  E  D K  LR+ V  GGCSGFQY F  D     DD + E+DG
Sbjct: 5   LFFTDNAVAKVRELIEEEENPDLK--LRVFVTGGGCSGFQYGFSFDESQEEDDTVIERDG 62

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           VKL+VD++SY ++ GAT+DY E L  S FVV  NP+A   C C SSF +
Sbjct: 63  VKLLVDSMSYQYLVGATIDYQEGLQGSQFVVQ-NPNASSTCGCGSSFSI 110

Required for insertion of 4Fe-4S clusters for at least IspG.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224087407	153	predicted protein [Populus trichocarpa]	0.902	0.967	0.693	7e-58
449459108	155	PREDICTED: iron-sulfur assembly protein	0.926	0.980	0.709	4e-56
449470384	157	PREDICTED: iron-sulfur assembly protein	0.939	0.980	0.697	1e-55
297806359	158	hypothetical protein ARALYDRAFT_908267 [	0.963	1.0	0.695	7e-55
388499000	161	unknown [Lotus japonicus]	0.957	0.975	0.689	3e-54
388513365	153	unknown [Lotus japonicus]	0.920	0.986	0.660	7e-54
357511065	160	Iron-sulfur assembly protein IscA-like p	0.969	0.993	0.648	1e-53
7406400	757	putative protein [Arabidopsis thaliana]	0.957	0.207	0.674	2e-53
18414394	158	Iron-sulfur assembly protein IscA-like 2	0.957	0.993	0.674	3e-53
351725657	156	uncharacterized protein LOC100527785 [Gl	0.932	0.980	0.662	4e-53

>gi|224087407|ref|XP_002308154.1| predicted protein [Populus trichocarpa] gi|118489149|gb|ABK96381.1| unknown [Populus trichocarpa x Populus deltoides] gi|222854130|gb|EEE91677.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 113/163 (69%), Positives = 128/163 (78%), Gaps = 15/163 (9%)

Query: 2   SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNF 61
           S SLI+R+ P F + +RQNHRLLSSS      AL EAS+            DSIH+TDN 
Sbjct: 6   SSSLIKRVTPLFTSWIRQNHRLLSSS------ALREASTLVD---------DSIHLTDNC 50

Query: 62  IKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNI 121
           I+R+KELQ SE S    MLRLGVETGGCSGFQY FDLD K NPDDR+FE +GV+LVVDNI
Sbjct: 51  IRRLKELQTSEGSAKDKMLRLGVETGGCSGFQYVFDLDDKTNPDDRVFETEGVRLVVDNI 110

Query: 122 SYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           SYDF+KGATVDYVEELIR+AF+V+TNPSAVGGCSCKSSFMVKQ
Sbjct: 111 SYDFLKGATVDYVEELIRAAFIVATNPSAVGGCSCKSSFMVKQ 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459108|ref|XP_004147288.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 129/162 (79%), Gaps = 10/162 (6%)

Query: 3   RSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFI 62
           R LIQRL PY  A +R+N RLLSSS S    A  EASSS  +   PS  +D+IHM+DN I
Sbjct: 4   RFLIQRLTPYLGAHIRKNQRLLSSSVS----AYQEASSSLIT---PSAGIDTIHMSDNCI 56

Query: 63  KRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNIS 122
           +RMKELQ  E  + K MLRL VE GGCSGFQY F+LD K NPDDR+ EK+GVKLVVDNIS
Sbjct: 57  RRMKELQ--EPMEEK-MLRLSVENGGCSGFQYVFNLDDKTNPDDRVCEKEGVKLVVDNIS 113

Query: 123 YDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           YDFVKGAT+DYVEELIRSAF+V+TNPSAVGGCSCKSSFMVKQ
Sbjct: 114 YDFVKGATIDYVEELIRSAFIVTTNPSAVGGCSCKSSFMVKQ 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470384|ref|XP_004152897.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus] gi|449505888|ref|XP_004162595.1| PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial-like [Cucumis sativus]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 129/162 (79%), Gaps = 8/162 (4%)

Query: 3   RSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFI 62
           RSLIQR+ PY  AR+++N RLLSSS    A+A  EA     S    +  +D+IHMTD+ I
Sbjct: 4   RSLIQRVTPYLVARIKENQRLLSSS----ASAYQEALPLSPSPSPSA-PVDTIHMTDSCI 58

Query: 63  KRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNIS 122
           +RMKELQ  +    + MLRL VETGGCSGFQY F+LD K NPDDRI+EK+GVKLVVDNIS
Sbjct: 59  RRMKELQDPK---EEKMLRLSVETGGCSGFQYVFNLDGKTNPDDRIYEKEGVKLVVDNIS 115

Query: 123 YDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           YDFVKGAT+DYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ
Sbjct: 116 YDFVKGATIDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806359|ref|XP_002871063.1| hypothetical protein ARALYDRAFT_908267 [Arabidopsis lyrata subsp. lyrata] gi|297316900|gb|EFH47322.1| hypothetical protein ARALYDRAFT_908267 [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 114/164 (69%), Positives = 138/164 (84%), Gaps = 6/164 (3%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY   R+R+NHRLL+ S +SA       +SS SSS+S S S+D +H++DN
Sbjct: 1   MSRSLVKRVAPYLVGRIRENHRLLNFSSASALKE----ASSSSSSQSESSSIDVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K +LRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKLLRLGVETGGCSGFQYVFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           +SYDFVKGATVDYVEELIR+AFVV+ NP+AVGGCSCKSSFMVKQ
Sbjct: 115 VSYDFVKGATVDYVEELIRAAFVVAENPAAVGGCSCKSSFMVKQ 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499000|gb|AFK37566.1| unknown [Lotus japonicus]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 133/161 (82%), Gaps = 4/161 (2%)

Query: 4   SLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIK 63
           SL +RLAP  AAR RQN +L S S SS+++ L++A++S SSS    P    +HMT+N ++
Sbjct: 5   SLFRRLAPSLAARFRQNQKLTSFSSSSSSSVLHDATTSSSSSSHVEP----VHMTENCLR 60

Query: 64  RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISY 123
           RMKEL+ASE++     LRL VETGGCSGFQYAFDLD +IN DDR+FE++G+KLVVDNISY
Sbjct: 61  RMKELEASESATAPKTLRLSVETGGCSGFQYAFDLDDRINSDDRVFEREGIKLVVDNISY 120

Query: 124 DFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           DFVKGATVDYVEELIRSAFVV+ NPSAVGGCSCKSSFMVKQ
Sbjct: 121 DFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513365|gb|AFK44744.1| unknown [Lotus japonicus]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/162 (66%), Positives = 131/162 (80%), Gaps = 11/162 (6%)

Query: 4   SLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIK 63
           SLI+RLAP  AAR RQN R L+ S SS+   L+ A+SS          ++ +H+T+N ++
Sbjct: 2   SLIRRLAPSLAARFRQNERFLNFSSSSSV--LHHATSSSY--------VEPVHITENCVR 51

Query: 64  RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY-KINPDDRIFEKDGVKLVVDNIS 122
           RMKEL+ASE++ ++ MLRL VETGGCSGFQYAFDLD   +N DDR+FEK+G+KLVVD++S
Sbjct: 52  RMKELEASESTTSRKMLRLSVETGGCSGFQYAFDLDDDSVNSDDRVFEKEGIKLVVDSVS 111

Query: 123 YDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           YDFVKGATVDYVEELIRSAFVV+ NPSAVGGCSCKSSFMVKQ
Sbjct: 112 YDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511065|ref|XP_003625821.1| Iron-sulfur assembly protein IscA-like protein [Medicago truncatula] gi|355500836|gb|AES82039.1| Iron-sulfur assembly protein IscA-like protein [Medicago truncatula] gi|388506884|gb|AFK41508.1| unknown [Medicago truncatula]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/165 (64%), Positives = 134/165 (81%), Gaps = 6/165 (3%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAA-ALNEASSSPSSSESPSPSLDSIHMTD 59
           M  SL +RLAP  AAR ++N  ++SS  SS+++  L+ A+SSPSS     P ++ +H+T+
Sbjct: 1   MQTSLFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSS-----PDVEPVHITE 55

Query: 60  NFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVD 119
           N +++MKEL A+E+S    MLRL VETGGCSGFQYAF+LD + N DDR+FEK+G+KLVVD
Sbjct: 56  NCVRKMKELDANESSSGGKMLRLSVETGGCSGFQYAFNLDDRFNSDDRVFEKEGIKLVVD 115

Query: 120 NISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           NISYDFVKGATVDYVEELIRSAF+V+ NPSAVGGCSCKSSFMVKQ
Sbjct: 116 NISYDFVKGATVDYVEELIRSAFIVTENPSAVGGCSCKSSFMVKQ 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406400|emb|CAB85510.1| putative protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 132/163 (80%), Gaps = 6/163 (3%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 600 MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 655

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 656 CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 713

Query: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           +SYD VKGAT+DY EELIR+AFVV+ NPSAVGGCSCKSSFMVK
Sbjct: 714 VSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 756

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414394|ref|NP_568130.1| Iron-sulfur assembly protein IscA-like 2 [Arabidopsis thaliana] gi|88909164|sp|Q8LCY2.2|ISAM2_ARATH RecName: Full=Iron-sulfur assembly protein IscA-like 2, mitochondrial; Flags: Precursor gi|9758020|dbj|BAB08617.1| unnamed protein product [Arabidopsis thaliana] gi|62318546|dbj|BAD94909.1| hypothetical protein [Arabidopsis thaliana] gi|332003287|gb|AED90670.1| Iron-sulfur assembly protein IscA-like 2 [Arabidopsis thaliana]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 132/163 (80%), Gaps = 6/163 (3%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+APY A R+R+NHRLL+ S +SA    + +SSS   S S     D +H++DN
Sbjct: 1   MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct: 57  CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           +SYD VKGAT+DY EELIR+AFVV+ NPSAVGGCSCKSSFMVK
Sbjct: 115 VSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725657|ref|NP_001237356.1| uncharacterized protein LOC100527785 [Glycine max] gi|255633204|gb|ACU16958.1| unknown [Glycine max]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 131/163 (80%), Gaps = 10/163 (6%)

Query: 5   LIQRLAPYFAARLRQNH---RLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNF 61
           +I+ LA + AAR R NH   RL SSS +++A+ L+ A+ SPSSSE        +H+T N 
Sbjct: 1   MIRSLALHLAARFRHNHNLVRLSSSSSAASASTLHHATPSPSSSEP-------VHITQNC 53

Query: 62  IKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNI 121
           ++RMKEL+ SE+S +  MLRL VETGGCSGFQY F+LD +IN DD++FE++GVKLVVDNI
Sbjct: 54  VRRMKELEGSESSTDGKMLRLSVETGGCSGFQYVFNLDNRINSDDKVFEREGVKLVVDNI 113

Query: 122 SYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
           SYDFVKGATVDYVEELIRSAFVV+ NPSAVGGCSCKSSFMVKQ
Sbjct: 114 SYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:505006581	158	AT5G03905 [Arabidopsis thalian	0.957	0.993	0.613	6.7e-49
UNIPROTKB|Q2TBG7	152	ISCA2 "Iron-sulfur cluster ass	0.634	0.684	0.587	4.5e-27
UNIPROTKB|F1S3F3	154	ISCA2 "Uncharacterized protein	0.634	0.675	0.577	9.4e-27
UNIPROTKB|J9P4R1	154	ISCA2 "Uncharacterized protein	0.634	0.675	0.568	1.9e-26
MGI|MGI:1921566	154	Isca2 "iron-sulfur cluster ass	0.634	0.675	0.568	6.6e-26
UNIPROTKB|Q86U28	154	ISCA2 "Iron-sulfur cluster ass	0.634	0.675	0.559	8.4e-26
RGD|1563216	154	RGD1563216 "similar to HESB li	0.634	0.675	0.550	1.8e-25
RGD|1309506	154	Isca2 "iron-sulfur cluster ass	0.634	0.675	0.541	3.6e-25
UNIPROTKB|E1C786	170	ISCA2 "Uncharacterized protein	0.634	0.611	0.532	1.2e-24
FB|FBgn0039205	139	CG13623 [Drosophila melanogast	0.640	0.755	0.463	5.5e-22

TAIR|locus:505006581 AT5G03905 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 100/163 (61%), Positives = 118/163 (72%)

Query:     1 MSRSLIQRLAPYFAARLRQNHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSIHMTDN 60
             MSRSL++R+APY A R+R+NHR                              D +H++DN
Sbjct:     1 MSRSLVKRVAPYLAGRIRENHRLLNFSSASAIKEASSSSSSQPESSSN----DVVHLSDN 56

Query:    61 FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
              I+RMKELQ+SE    K MLRLGVETGGCSGFQY F+LD + NPDDR+FEK+GVKLVVDN
Sbjct:    57 CIRRMKELQSSEPE--KKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVVDN 114

Query:   121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             +SYD VKGAT+DY EELIR+AFVV+ NPSAVGGCSCKSSFMVK
Sbjct:   115 VSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMVK 157

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q2TBG7 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 64/109 (58%), Positives = 79/109 (72%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FEK G 
Sbjct:    48 IHLTDSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGA 102

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF VK
Sbjct:   103 RVVVDSDSLAFVKGAHVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVK 151

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1S3F3 ISCA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 63/109 (57%), Positives = 79/109 (72%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IHLTDSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF VK
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVK 153

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|J9P4R1 ISCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 62/109 (56%), Positives = 79/109 (72%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             IH+T++ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IHLTNSCVQRLLEI--TEGSE---FLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             K+VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   105 KVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1921566 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 62/109 (56%), Positives = 78/109 (71%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF VK
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVK 153

GO:0003674 "molecular_function" evidence=ND

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q86U28 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 61/109 (55%), Positives = 78/109 (71%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ S  FVKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   105 RVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1563216 RGD1563216 "similar to HESB like domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/109 (55%), Positives = 78/109 (71%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ S  +VKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   105 RVVVDSDSLAYVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

RGD|1309506 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/109 (54%), Positives = 78/109 (71%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             I +TD+ ++R+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    50 IRLTDSCVQRLLEI--TEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 104

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD+ +  +VKGA VD+ +ELIRS+F V  NP A  GCSC SSF +K
Sbjct:   105 RVVVDSDNLAYVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIK 153

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|E1C786 ISCA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 58/109 (53%), Positives = 79/109 (72%)

Query:    55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             ++++++ +KR+ E+  +E S+    LRL VE GGCSGFQY F LD  INPDDR+FE+ G 
Sbjct:    66 VYLSESCVKRLLEI--AEGSE---FLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGA 120

Query:   115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             ++VVD  S  FVKG+ VD+ +ELIRS+F V +NP A  GCSC +SF VK
Sbjct:   121 RVVVDVDSLAFVKGSMVDFSQELIRSSFQVVSNPQAEKGCSCGTSFSVK 169

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0039205 CG13623 [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/110 (46%), Positives = 74/110 (67%)

Query:    54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
             S+ ++++ +KR++E+       + + LR+ VE GGCSGFQY FDLD ++N DDR F +  
Sbjct:    34 SVQVSESCLKRLREICV-----DGSFLRVTVEGGGCSGFQYKFDLDKQLNEDDRQFGEAE 88

Query:   114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
              K+V+D +S ++  GATVDY  ELIR+ F +  NP A  GCSC SSF +K
Sbjct:    89 AKVVIDTVSLEYCSGATVDYHSELIRAGFRMVANPLAEQGCSCGSSFSIK 138

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LCY2	ISAM2_ARATH	No assigned EC number	0.6748	0.9573	0.9936	yes	no
Q2TBG7	ISCA2_BOVIN	No assigned EC number	0.5136	0.8048	0.8684	yes	no
Q9DCB8	ISCA2_MOUSE	No assigned EC number	0.4726	0.8170	0.8701	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI0649	hypothetical protein (153 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•						•		0.472

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	2e-89
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	7e-46
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	2e-40
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	7e-36
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	9e-28
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	6e-21
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	8e-19
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	2e-18
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	2e-17

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score =  257 bits (659), Expect = 2e-89
 Identities = 122/163 (74%), Positives = 135/163 (82%), Gaps = 4/163 (2%)

Query: 1   MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDN 60
           MSRSL++R+AP  A R+RQNHRLL+ S SSA       +S+ SSS S S SLD++HMTDN
Sbjct: 5   MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKE----ASTSSSSPSSSASLDAVHMTDN 60

Query: 61  FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120
            I+R+KELQ SE S    MLRL VETGGCSGFQY F+LD K N DDR+FEKDGVKLVVDN
Sbjct: 61  CIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDN 120

Query: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK
Sbjct: 121 ISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163

Length = 163

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  145 bits (368), Expect = 7e-46
 Identities = 53/105 (50%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 58  TDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLV 117
           TD+  KR+K L A E   N   LR+GV+ GGCSG QY  + D + N DD +FE+DGVK+V
Sbjct: 3   TDSAAKRIKALLAGEGEPNL-GLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61

Query: 118 VDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           VD  S  ++ G+ +DYVEEL+ S F   TNP+A G C C  SF V
Sbjct: 62  VDPKSLPYLDGSEIDYVEELLGSGFTF-TNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  131 bits (332), Expect = 2e-40
 Identities = 52/108 (48%), Positives = 69/108 (63%), Gaps = 2/108 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD    R+K L A E  +N   LR+GV+ GGCSGFQY  + D +IN DD +FE+DGV
Sbjct: 5   ITLTDAAAARVKALLAKEGEENLG-LRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGV 63

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           K+VVD  S  +++G  +DYVE+L+ S F    NP+A   C C  SF V
Sbjct: 64  KVVVDPKSLPYLEGTEIDYVEDLLGSGFTF-KNPNAKSSCGCGESFSV 110

Length = 110

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score =  120 bits (303), Expect = 7e-36
 Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 42  PSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYK 101
             S + P P    +  TD    ++KEL   E + +   LR+ +  GGCSGFQY F  D +
Sbjct: 1   MMSDDVPLP----LVFTDAAAAKVKELIEEEGNPD-LKLRVYITGGGCSGFQYGFTFDEQ 55

Query: 102 INPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFM 161
           +N DD   EK GV LVVD +S  ++ GA VDY E L  S FV+  NP+A   C C SSF 
Sbjct: 56  VNEDDTTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVI-KNPNAKTTCGCGSSFS 114

Query: 162 V 162
           +
Sbjct: 115 I 115

Length = 115

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 98.8 bits (247), Expect = 9e-28
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD   K +K+L   E    +  LR+GV  GGCSGF Y    + + +  D +FE+DGV
Sbjct: 1   ITLTDAAAKHIKKLLDLE--GGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGV 58

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNP 148
            +VVD  S  +++G  +D+VEEL+ S F   +NP
Sbjct: 59  TVVVDEKSLPYLEGTEIDFVEELLGSGFTF-SNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 81.8 bits (202), Expect = 6e-21
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           I +TD+   R+    A+     K   LRLGV+T GCSG  Y  +   +  PDD +FE  G
Sbjct: 1   ITLTDSAAARVNTFLANR---GKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKG 57

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           VK+V+D  S  ++ G  +D+V+E +   F   TNP+    C C  SF V
Sbjct: 58  VKIVIDGKSLQYLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESFHV 105

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 76.4 bits (188), Expect = 8e-19
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           I +TD     ++EL A         +RLGV+  GC+G +Y  DL  +   DD + E DG 
Sbjct: 3   ITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGA 60

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
           K+ V   +  F+ G  VD+V   +R  F  + NP+A   C C  SF
Sbjct: 61  KVFVAPEAVLFILGTQVDFVRTTLRQGFKFN-NPNATSACGCGESF 105

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           + +T      ++EL A +       +RLGV+  GC+GF Y  D   + + DD +FE DG 
Sbjct: 18  LTLTPAAAAHIRELMAKQPG--MKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGA 75

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           KL V   +  F+ G  VDYV E +   F    NP A   C C  SF V
Sbjct: 76  KLFVPLQAMPFIDGTEVDYVREGLNQIFKFH-NPKAQNECGCGESFGV 122

Length = 122

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 73.0 bits (179), Expect = 2e-17
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAM-LRLGVETGGCSGFQYAFDLDYKINPDDRIFEKD 112
           SI ++D+   R+    A+     K   LRLGV T GCSG  Y  +   +  P+D +FE  
Sbjct: 2   SITLSDSAAARVNTFLANR---GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK 58

Query: 113 GVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           GVK+VVD  S  F+ G  +D+V+E +   F   TNP+    C C  SF V
Sbjct: 59  GVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESFHV 107

Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
KOG1119	199	consensus Mitochondrial Fe-S cluster biosynthesis	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	100.0
KOG1120	134	consensus Fe-S cluster biosynthesis protein ISA1 (	100.0
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.94
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.94
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.93
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.91
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.68
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.74
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	97.01
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	96.01

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=2e-46  Score=292.12  Aligned_cols=159  Identities=77%  Similarity=1.125  Sum_probs=132.1

Q ss_pred             CchhhhhhhhhHHHHHHhhhcccccCCccccccccccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceE
Q 031188            1 MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAML   80 (164)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~L   80 (164)
                      ++|+|++|++|++++|+|++||+|.+++++.......+++.|    ......+.|+|||+|+++|++++++++..++.+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~L   80 (163)
T PLN03082          5 MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKEASTSSSSP----SSSASLDAVHMTDNCIRRLKELQTSEPSAEDKML   80 (163)
T ss_pred             cchhhhhccccceeecccchhhHHHhhhhhhhhhhcccccCc----cccccCCceEECHHHHHHHHHHHHhCCCCCCceE
Confidence            589999999999999999999999763222111111111111    1111236799999999999999988653235789


Q ss_pred             EEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCC
Q 031188           81 RLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF  160 (164)
Q Consensus        81 Rl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF  160 (164)
                      ||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||++++++++|+|.+|||++++||||+||
T Consensus        81 Rl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~CgCG~SF  160 (163)
T PLN03082         81 RLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF  160 (163)
T ss_pred             EEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCcCCCCCE
Confidence            99999999999999999999888999999999999999999999999999999999999999975699999999999999


Q ss_pred             ccC
Q 031188          161 MVK  163 (164)
Q Consensus       161 ~~~  163 (164)
                      .+|
T Consensus       161 ~vk  163 (163)
T PLN03082        161 MVK  163 (163)
T ss_pred             eCC
Confidence            986

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-38  Score=229.76  Aligned_cols=109  Identities=47%  Similarity=0.811  Sum_probs=104.3

Q ss_pred             CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (164)
Q Consensus        52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI  131 (164)
                      .++|+|||+|++++++++.+++. ++.+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++|
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~-~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~I   80 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGE-ENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEI   80 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccC-CCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEE
Confidence            37999999999999999999863 57899999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      ||+++++|++|+| +|||++..||||+||.+
T Consensus        81 Dyv~~~~g~~F~~-~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          81 DYVEDLLGSGFTF-KNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEEcCcCCceEE-ECCCCCccccCCCCCCC
Confidence            9999999999999 99999999999999974

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=223.77  Aligned_cols=107  Identities=38%  Similarity=0.680  Sum_probs=101.0

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID  132 (164)
                      |+|+|||+|+++|++++++++  .+.+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++||
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~ID   78 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcC--CCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEE
Confidence            679999999999999998764  356899999999999999999998889999999999999999999999999999999


Q ss_pred             eeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      |++++.+++|+| +|||++++||||+||.+
T Consensus        79 y~~~~~~~~F~f-~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         79 FVKEGLNEGFKF-TNPNVKDECGCGESFHV  107 (107)
T ss_pred             EeeCCCCceEEE-ECCCCCCccCCCCCeeC
Confidence            999999999999 99999999999999974

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=7.4e-37  Score=225.62  Aligned_cols=109  Identities=44%  Similarity=0.718  Sum_probs=102.3

Q ss_pred             CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (164)
Q Consensus        52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI  131 (164)
                      .|+|+||++|+++|+++++.++. ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         7 ~~~i~iT~~A~~~i~~~~~~~~~-~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I   85 (115)
T PRK13623          7 PLPLVFTDAAAAKVKELIEEEGN-PDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV   85 (115)
T ss_pred             CcceEECHHHHHHHHHHHhhCCC-CceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence            48999999999999999977652 35679999999999999999999998899999999999999999999999999999


Q ss_pred             EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      ||++++.+++|+| +|||++.+||||+||.+
T Consensus        86 Dy~~~~~~~~F~f-~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         86 DYTEGLEGSRFVI-KNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             EeecCCCcceEEE-ECCCCCcCCCCCcCccC
Confidence            9999999999999 99999999999999974

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=224.85  Aligned_cols=109  Identities=36%  Similarity=0.621  Sum_probs=102.8

Q ss_pred             CCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcE
Q 031188           51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGAT  130 (164)
Q Consensus        51 ~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~t  130 (164)
                      .||+|+|||+|+++|++++++++  ...+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++
T Consensus        14 ~~~~I~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~   91 (122)
T PRK09504         14 AWQGLTLTPAAAAHIRELMAKQP--GMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE   91 (122)
T ss_pred             CcCCEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence            46999999999999999998764  3468999999999999999999999899999999999999999999999999999


Q ss_pred             EEeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       131 IDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      |||++++.+++|+| .|||+.++||||+||.+
T Consensus        92 IDy~~~~~~~gF~f-~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         92 VDYVREGLNQIFKF-HNPKAQNECGCGESFGV  122 (122)
T ss_pred             EEeecCCCcceEEE-ECCCCCCCcCCCCCeeC
Confidence            99999999999999 99999999999999974

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=1.4e-35  Score=215.66  Aligned_cols=105  Identities=38%  Similarity=0.703  Sum_probs=99.4

Q ss_pred             eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEee
Q 031188           55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYV  134 (164)
Q Consensus        55 ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~  134 (164)
                      |+||++|+++|++++++++  ++.+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~iT~~A~~~i~~~~~~~~--~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~   78 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRG--KGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFV   78 (105)
T ss_pred             CEECHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEe
Confidence            6899999999999998764  35689999999999999999999888999999999999999999999999999999999


Q ss_pred             ecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          135 EELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       135 e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      +++++++|+| +|||++++||||+||.+
T Consensus        79 ~~~~~~~F~~-~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        79 KEGLNEGFKF-TNPNVKDECGCGESFHV  105 (105)
T ss_pred             cCCCcceEEE-ECCCCCccCCCCCCccC
Confidence            9999999999 99999999999999974

This clade is limited to the proteobacteria.

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=3.7e-35  Score=214.17  Aligned_cols=105  Identities=35%  Similarity=0.641  Sum_probs=99.9

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEe
Q 031188           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY  133 (164)
Q Consensus        54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy  133 (164)
                      +|+|||+|+++|++++++++  +..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~--~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy   79 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDF   79 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCC--CCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEE
Confidence            69999999999999998765  3468999999999999999999988899999999999999999999999999999999


Q ss_pred             eecCccceEEEccCCCCCCCCCCCCCCc
Q 031188          134 VEELIRSAFVVSTNPSAVGGCSCKSSFM  161 (164)
Q Consensus       134 ~e~~~g~gF~i~~nPn~~~~CgCG~SF~  161 (164)
                      ++++.+++|+| +|||++.+||||+||.
T Consensus        80 ~~~~~~~~F~~-~NPn~~~~CgCG~Sf~  106 (107)
T TIGR01997        80 VRTTLRQGFKF-NNPNATSACGCGESFE  106 (107)
T ss_pred             EEcCCcceEEE-ECCCCCCccCCCCCcc
Confidence            99999999999 9999999999999996

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-35  Score=227.18  Aligned_cols=154  Identities=47%  Similarity=0.709  Sum_probs=129.5

Q ss_pred             chhhhhhhhhHHHHHHhhhcccccCCccccccccccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceEE
Q 031188            2 SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLR   81 (164)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LR   81 (164)
                      .+++.+++++++..+++++|+..-.   .+++.+-.++++++.....+|+ -.+.|+|.|.++|+|+.....    ..||
T Consensus        45 ~~~~~~~~T~~~~~~l~e~~~~~~f---~s~~~~ke~~ss~~~~~e~~~~-~~~~lsds~~krl~EI~~~~p----e~LR  116 (199)
T KOG1119|consen   45 RRSFRRTVTTLAQFPLTELFIKKAF---YSASATKEAFSSSSRIPEKSPG-FNLHLSDSCSKRLKEIYENSP----EFLR  116 (199)
T ss_pred             HHhhhchhhhhhhhhhHHHHHHhhh---ccHHHHhhhhcCcccCCccCCC-ceEEehhHHHHHHHHHHhCCc----ceEE
Confidence            4567788888888888877776633   3334444444443333333333 589999999999999998762    6899


Q ss_pred             EEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCCc
Q 031188           82 LGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFM  161 (164)
Q Consensus        82 l~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~  161 (164)
                      |.|++|||+||||.|.+|...++||.+++.+|.+|+||..++.|++|+||||.+|+++++|+|+.||.++.+||||+||+
T Consensus       117 l~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~~gCsCgSSF~  196 (199)
T KOG1119|consen  117 LTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAKQGCSCGSSFD  196 (199)
T ss_pred             EEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHHhhhhheeecCcccccCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             cC
Q 031188          162 VK  163 (164)
Q Consensus       162 ~~  163 (164)
                      +|
T Consensus       197 ik  198 (199)
T KOG1119|consen  197 IK  198 (199)
T ss_pred             cC
Confidence            87

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=100.00  E-value=1.3e-33  Score=204.28  Aligned_cols=105  Identities=50%  Similarity=0.850  Sum_probs=98.9

Q ss_pred             eeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeee
Q 031188           56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVE  135 (164)
Q Consensus        56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e  135 (164)
                      +||++|+++|++++++++. ++.+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|||++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~-~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~   79 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGE-PNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVE   79 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCC-CceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEee
Confidence            5899999999999988753 357899999999999999999999888999999999999999999999999999999999


Q ss_pred             cCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          136 ELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       136 ~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      +..+++|+| .|||+.+.||||+||++
T Consensus        80 ~~~~~~f~i-~nPn~~~~c~cg~sf~~  105 (105)
T TIGR00049        80 ELLGSGFTF-TNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             cCCcceEEE-ECCCCCccCCCCcCccC
Confidence            999999999 89999999999999974

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-32  Score=203.53  Aligned_cols=125  Identities=27%  Similarity=0.585  Sum_probs=114.8

Q ss_pred             cccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCe
Q 031188           35 LNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV  114 (164)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi  114 (164)
                      +...+++....++..|.+..|++||.|+++|++++++++  +...|||.|+..||+|+.|.|.+.+++...|++++.||+
T Consensus        10 ~s~~~~~~~a~~~~~~~k~~ltLTp~Av~~ik~ll~~~~--e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv   87 (134)
T KOG1120|consen   10 LSPRNARAPAARKLAPRKAALTLTPSAVNHIKQLLSDKP--EDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGV   87 (134)
T ss_pred             cccccccccccccccccccccccCHHHHHHHHHHHHhCC--cCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCc
Confidence            344555566667777888999999999999999999874  578999999999999999999999999999999999999


Q ss_pred             EEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       115 ~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      +|+||+++...+-|+++||+++.++++|+| .|||+++.||||+||++
T Consensus        88 ~I~ie~KA~l~liGteMDyvddkL~Sefvf-~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen   88 RIFIEPKALLTLIGTEMDYVDDKLSSEFVF-SNPNAKGTCGCGESFSV  134 (134)
T ss_pred             EEEEcccceeeeccceehhhhhhhcCceEe-eCCCccccccccccccC
Confidence            999999999999999999999999999999 89999999999999974

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.94  E-value=1.8e-26  Score=184.23  Aligned_cols=96  Identities=21%  Similarity=0.320  Sum_probs=90.0

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEee--cCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (164)
Q Consensus        54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI  131 (164)
                      ||+|||+|+++|++++++++  .+.+|||+|+++||+|++|+|.|  +++++++|.+++.+|++|+||+.++.||+|++|
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~--~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I   78 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQE--EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEI   78 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCC--CCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence            68999999999999998765  34689999999999999999999  677889999999999999999999999999999


Q ss_pred             EeeecCccceEEEccCCCCCC
Q 031188          132 DYVEELIRSAFVVSTNPSAVG  152 (164)
Q Consensus       132 Dy~e~~~g~gF~i~~nPn~~~  152 (164)
                      ||++++++++|+| +|||++.
T Consensus        79 Dyve~~~g~gF~f-~NPNa~~   98 (192)
T PRK11190         79 DFVTDQLGSQLTL-KAPNAKM   98 (192)
T ss_pred             EEeecCCCCceEE-ECCCCCC
Confidence            9999999999999 9999975

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.94  E-value=1.4e-26  Score=165.20  Aligned_cols=89  Identities=18%  Similarity=0.326  Sum_probs=83.1

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEe
Q 031188           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY  133 (164)
Q Consensus        54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy  133 (164)
                      ||+|||+|+++|++++++++. +..+|||+|+++||+||+|.|.+++ ++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         3 ~i~lT~~A~~~i~~ll~~~~~-~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy   80 (92)
T TIGR01911         3 IVAMSDDAYEEFKDFLKENDI-DNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC   80 (92)
T ss_pred             ceEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence            799999999999999987753 2357999999999999999999987 58999999999999999999999999999999


Q ss_pred             eecCccceEEE
Q 031188          134 VEELIRSAFVV  144 (164)
Q Consensus       134 ~e~~~g~gF~i  144 (164)
                      ++++.+++|+|
T Consensus        81 ~~~~~g~gF~~   91 (92)
T TIGR01911        81 AEENFGAGFSL   91 (92)
T ss_pred             ecCCCCCcEEe
Confidence            99999999997

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.93  E-value=3e-25  Score=177.03  Aligned_cols=95  Identities=21%  Similarity=0.312  Sum_probs=88.5

Q ss_pred             eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEee--cCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188           55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (164)
Q Consensus        55 ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID  132 (164)
                      |+||++|+++|++++++++  .+.+|||+|+++||+||+|+|.|  +++++++|.+++.+|++|+||+.++.||+|++||
T Consensus         1 I~IT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~ID   78 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQN--EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVID   78 (190)
T ss_pred             CEECHHHHHHHHHHHhhCC--CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEE
Confidence            6899999999999998765  35689999999999999999999  5678899999999999999999999999999999


Q ss_pred             eeecCccceEEEccCCCCCC
Q 031188          133 YVEELIRSAFVVSTNPSAVG  152 (164)
Q Consensus       133 y~e~~~g~gF~i~~nPn~~~  152 (164)
                      |++++++++|+| +|||++.
T Consensus        79 yve~~~g~gF~f-~NPna~~   97 (190)
T TIGR03341        79 FVTDRMGGQLTL-KAPNAKM   97 (190)
T ss_pred             EeecCCCceeEE-eCCccCC
Confidence            999999999999 9999874

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.91  E-value=3.8e-24  Score=156.09  Aligned_cols=101  Identities=36%  Similarity=0.621  Sum_probs=93.2

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCC--------CC-CeEEEEeecCCC-CCCceEEEeCCeEEEEcCCc
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGG--------CS-GFQYAFDLDYKI-NPDDRIFEKDGVKLVVDNIS  122 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~G--------Cs-G~~y~l~l~~~~-~~dD~v~e~~Gi~v~VD~~s  122 (164)
                      |.|+||++|+++|++++.+++   .. |||+++.+|        |+ |++|.|.+++++ +++|.+++.+|++|+||+.+
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~---~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~   76 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDP---KK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYS   76 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTT---ES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGG
T ss_pred             CEEEECHHHHHHHHHHHhcCC---CE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccH
Confidence            899999999999999999875   22 999999999        99 999999999877 89999999999999999999


Q ss_pred             cccc-CCcEEEeeecCccceEEEccCCCCCCCCCCCC
Q 031188          123 YDFV-KGATVDYVEELIRSAFVVSTNPSAVGGCSCKS  158 (164)
Q Consensus       123 ~~~L-~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~  158 (164)
                      .+|| +|++|||+++..+.+|++ .||+..+.|+||.
T Consensus        77 ~~~l~~~~~iD~~~~~~~~~f~~-~~~~~~~~~~~~~  112 (112)
T PF01521_consen   77 LWYLDEGLTIDYVEDLGGFGFKS-DNPNLDSNCGCGD  112 (112)
T ss_dssp             HHHH-TTEEEEEEEETTEEEEEE-ETTTEEEEECECE
T ss_pred             hhhhhCCCEEEEEEccCccEEEE-CCCCcCceeccCC
Confidence            9999 999999999999999998 9999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.68  E-value=1.5e-16  Score=111.40  Aligned_cols=88  Identities=25%  Similarity=0.333  Sum_probs=75.2

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCC----CeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCS----GFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG  128 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCs----G~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g  128 (164)
                      |+|+||+.|.+|+++.+..++   |..||++++.|||+    ||+.++.-+. |++--...+.+|++|||+..++||+++
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~---g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d   76 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEE---GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDD   76 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCC---CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcC
Confidence            789999999999999998874   78899999999997    6666665443 666555667899999999999999998


Q ss_pred             --cEEEeeecCccceEEE
Q 031188          129 --ATVDYVEELIRSAFVV  144 (164)
Q Consensus       129 --~tIDy~e~~~g~gF~i  144 (164)
                        .+|||.++.....|..
T Consensus        77 ~d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          77 HDLKVDYSPDTDEISFSY   94 (95)
T ss_pred             CcEEEeccCCCCcceeec
Confidence              8999999988888864

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=2.9e-08  Score=71.62  Aligned_cols=84  Identities=17%  Similarity=0.173  Sum_probs=63.3

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCC-eEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC-cE
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG-FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG-AT  130 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG-~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g-~t  130 (164)
                      |.|++||+|+++|+........ ....++...++.||.| -.+.+++..+.+..|..++.++.+|+|-....-||++ ++
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~-~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mt   79 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLV-FDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMT   79 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcC-ccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceee
Confidence            7899999999999987766532 1234554444455533 2367777776678899999999999999988888886 89


Q ss_pred             EEeeecC
Q 031188          131 VDYVEEL  137 (164)
Q Consensus       131 IDy~e~~  137 (164)
                      |||.+..
T Consensus        80 idyN~~~   86 (114)
T COG4918          80 IDYNPSY   86 (114)
T ss_pred             eecCCcc
Confidence            9999764

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.0065  Score=43.90  Aligned_cols=89  Identities=21%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecC---CCCCCceEE-EeCCeEEEEcCCcccccCC
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG  128 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~g  128 (164)
                      ..++.|++|+.-|.++..+.+.      -++-..+||..-+--|-+..   -..+.|+.. +++|++|||....+.+-+-
T Consensus         5 ~~V~aT~aAl~Li~~l~~~hgp------vmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKH   78 (116)
T COG3564           5 ARVLATPAALDLIAELQAEHGP------VMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKH   78 (116)
T ss_pred             cceecCHHHHHHHHHHHHhcCC------EEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhc
Confidence            4789999999999999988751      34556788852122232211   123456544 6899999999999988775


Q ss_pred             --cEEEeeecCccceEEEccCCC
Q 031188          129 --ATVDYVEELIRSAFVVSTNPS  149 (164)
Q Consensus       129 --~tIDy~e~~~g~gF~i~~nPn  149 (164)
                        +.||.+.. -|..|.+ +|-.
T Consensus        79 TqLIIDVVpG-RGGmFSL-dng~   99 (116)
T COG3564          79 TQLIIDVVPG-RGGMFSL-DNGR   99 (116)
T ss_pred             cEEEEEEecC-CCceeEc-cCCc
Confidence              68998864 4678998 6543

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=96.01  E-value=0.051  Score=38.95  Aligned_cols=68  Identities=19%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             EEEecCCCCCeEEEEeecC---CCCCCceEE-EeCCeEEEEcCCcccccCC--cEEEeeecCccceEEEccCCCCC
Q 031188           82 LGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG--ATVDYVEELIRSAFVVSTNPSAV  151 (164)
Q Consensus        82 l~v~~~GCsG~~y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~g--~tIDy~e~~~g~gF~i~~nPn~~  151 (164)
                      ++-..+||..-+-=|-+..   ...+.|+.+ ++.|++|+|.+....|.+.  ++||-++ ..|.+|.+ ++|..+
T Consensus        14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSL-E~~~G~   87 (95)
T PF05610_consen   14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSL-EAPEGK   87 (95)
T ss_pred             EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeec-cCCCCc
Confidence            4456788852222333321   234567654 6899999999999999997  5999887 45789998 888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		4e-18
2apn_A	114	Hi1723 Solution Structure Length = 114		9e-18
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		1e-12
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		2e-12
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		1e-10
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		2e-06

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 57  MTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKL 116
           +TD  ++ +K++ A E +    +LR+ V  GGCSGFQYA   D  +   D +FE DGVK+
Sbjct: 12  VTDKAVEEIKKV-AQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70
Query: 117 VVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
           V+D  S  +V GA +DYV + +   F +  NP+A G C C SSF
Sbjct: 71  VIDPFSMPYVNGAELDYVVDFMGGGFTIR-NPNATGSCGCGSSF 113

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
           +  TD    ++K L  SE  +    LR+ +  GGCSGFQY F  D K+N  D   EK GV
Sbjct: 9   LTFTDAAANKVKSL-ISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           +LV+D +S  ++ G TVDY E L  S F V+ NP+A   C C SSF +
Sbjct: 68  QLVIDPMSLQYLIGGTVDYTEGLEGSRFTVN-NPNATSTCGCGSSFSI 114

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFG--LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           VK+VVD  S  F+ G  +D+V+E +   F   TNP+    C C  SF V
Sbjct: 60  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESFHV 107

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANRGKGFG--LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
           VK+VVD  S  F+ G  +D+V+E +   F   TNP+    C C  SF
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESF 105

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 64  RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISY 123
            ++EL A +       +RLGV+  GC+GF Y  D   + + DD +FE DG KL V   + 
Sbjct: 50  HIRELVAKQPG--MVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAM 107
Query: 124 DFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
            F+ G  VD+V E +   F    NP A   C C  SF V
Sbjct: 108 PFIDGTEVDFVREGLNQIFKFH-NPKAQNECGCGESFGV 145

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 55  IHMTDNFIKRMKELQASETSDNKA-MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           + +T   I+ ++ LQ       +A +LR+ V+   C  ++Y   L  +  P D + +  G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
             + +   + + ++G  VDY+E+L+  AF    NP+A   C C  +F V +
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFH-NPNASQTCGCGMAFRVSR 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	6e-43
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	1e-42
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	7e-42
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	5e-39
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	1e-37
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	4e-31

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  137 bits (348), Expect = 6e-43
 Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             +TD  ++ +K++      +N  +LR+ V  GGCSGFQYA   D  +   D +FE DGV
Sbjct: 10  FKVTDKAVEEIKKVAQENNIEN-PILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           K+V+D  S  +V GA +DYV + +   F +  NP+A G C C SSF   
Sbjct: 69  KVVIDPFSMPYVNGAELDYVVDFMGGGFTI-RNPNATGSCGCGSSFSCG 116

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  136 bits (345), Expect = 1e-42
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 55  IHMTDNFIKRMKELQASETSDNKA-MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           + +T   I+ ++ LQ       +A +LR+ V+   C  ++Y   L  +  P D + +  G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
             + +   + + ++G  VDY+E+L+  AF    NP+A   C C  +F V 
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRF-HNPNASQTCGCGMAFRVS 110

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  135 bits (341), Expect = 7e-42
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
            +  TD    ++K L + E + +   LR+ +  GGCSGFQY F  D K+N  D   EK G
Sbjct: 8   PLTFTDAAANKVKSLISEEENTD-LKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSG 66

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
           V+LV+D +S  ++ G TVDY E L  S F V  NP+A   C C SSF +
Sbjct: 67  VQLVIDPMSLQYLIGGTVDYTEGLEGSRFTV-NNPNATSTCGCGSSFSI 114

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  128 bits (324), Expect = 5e-39
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 5/145 (3%)

Query: 18  RQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNK 77
             +H   SS          +  S   + +  +     + +T      ++EL A +     
Sbjct: 6   HHHHHHHSSGHIDDDDLHMDMHSGTFNPQDFAWQ--GLTLTPAAAIHIRELVAKQ--PGM 61

Query: 78  AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEEL 137
             +RLGV+  GC+GF Y  D   + + DD +FE DG KL V   +  F+ G  VD+V E 
Sbjct: 62  VGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREG 121

Query: 138 IRSAFVVSTNPSAVGGCSCKSSFMV 162
           +   F    NP A   C C  SF V
Sbjct: 122 LNQIFKF-HNPKAQNECGCGESFGV 145

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  124 bits (313), Expect = 1e-37
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 2   SITLSDSAAARVNTFLANR--GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163
           VK+VVD  S  F+ G  +D+V+E +   F   TNP+    C C  SF + 
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESFKLA 108

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score =  107 bits (270), Expect = 4e-31
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 43  SSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKI 102
           SS   P  S     +T    +++ +      ++    LRL           Y    D  +
Sbjct: 11  SSGLVPRGSHMMFKLTPAAAEQVLKAAKQGGTEG-MCLRLAAGRNPDGSIDYRMGFD-DL 68

Query: 103 NPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELI-RSAFVVSTNP 148
             DD     +GV++V+       +   T+DYVE    +  F+   NP
Sbjct: 69  TEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIF-LNP 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.95
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.84
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.81

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=4.7e-39  Score=237.45  Aligned_cols=108  Identities=37%  Similarity=0.667  Sum_probs=92.7

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID  132 (164)
                      |+|+|||+|+++|++++++++  ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID   78 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHC--CCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             CceEECHHHHHHHHHHHhhCC--CCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence            799999999999999998875  257899999999999999999999888999999999999999999999999999999


Q ss_pred             eeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188          133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (164)
Q Consensus       133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~  163 (164)
                      |++++++++|+| .|||++.+||||+||.++
T Consensus        79 y~~~~~g~gF~~-~NPna~~~CgCG~SF~~~  108 (118)
T 1r94_A           79 FVKEGLNEGFKF-TNPNVKDECGCGESFKLA  108 (118)
T ss_dssp             EEEETTEEEEEE-ECTTCCC-----------
T ss_pred             EEcCCCcCceEE-eCCCCCCCCCCCCCcCCC
Confidence            999999999999 999999999999999976

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=4.5e-39  Score=239.50  Aligned_cols=110  Identities=38%  Similarity=0.746  Sum_probs=89.9

Q ss_pred             CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (164)
Q Consensus        52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI  131 (164)
                      +|||+|||+|+++|++++++++. ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         7 ~m~I~iT~~A~~~l~~ll~~~~~-~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I   85 (124)
T 1nwb_A            7 QFIFKVTDKAVEEIKKVAQENNI-ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTTC-SSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             CceEEECHHHHHHHHHHHhhCCC-CCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence            49999999999999999988763 36789999999999999999999998889999999999999999999999999999


Q ss_pred             EeeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188          132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (164)
Q Consensus       132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~  163 (164)
                      ||++++.+++|+| +|||++.+||||+||+++
T Consensus        86 Dy~~~~~g~gF~~-~NPna~~~CgCG~SF~~~  116 (124)
T 1nwb_A           86 DYVVDFMGGGFTI-RNPNATGSCGCGSSFSCG  116 (124)
T ss_dssp             EEEEETTEEEEEE-ECC---------------
T ss_pred             EEEcCCCcceEEE-eCCCCCcCCCCCCCcCCC
Confidence            9999999999999 999999999999999976

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=1e-38  Score=233.44  Aligned_cols=109  Identities=27%  Similarity=0.551  Sum_probs=97.1

Q ss_pred             eeeeCHHHHHHHHHHHhcc-CCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188           54 SIHMTDNFIKRMKELQASE-TSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (164)
Q Consensus        54 ~ItIT~~A~~~lk~ll~~~-~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID  132 (164)
                      ||+|||+|+++|+++++++ +.+++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID   80 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD   80 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence            6999999999999999876 432156899999999999999999999988899999999999999999999999999999


Q ss_pred             eeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188          133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (164)
Q Consensus       133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~  163 (164)
                      |++++++++|+| +|||++.+||||+||++|
T Consensus        81 y~~~~~g~gF~~-~nPna~~~CgCG~SF~~~  110 (112)
T 1x0g_A           81 YIEDLMGGAFRF-HNPNASQTCGCGMAFRVS  110 (112)
T ss_dssp             EEEETTEEEEEE-ECTTCSEECSSSSEEECC
T ss_pred             EEecCCCCEEEE-eCCCCCcCCCCCCccccC
Confidence            999999999999 999999999999999976

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=1.7e-37  Score=236.91  Aligned_cols=108  Identities=35%  Similarity=0.609  Sum_probs=102.7

Q ss_pred             CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188           52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV  131 (164)
Q Consensus        52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI  131 (164)
                      +|.|+|||+|+++|++++++++  ++.+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.+++||+|++|
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I  115 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQP--GMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEV  115 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHST--TCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEE
T ss_pred             cceEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEE
Confidence            6889999999999999998875  35789999999999999999999988899999999999999999999999999999


Q ss_pred             EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      ||++++.+++|+| +|||++.+||||+||.+
T Consensus       116 Dy~e~l~g~gF~f-~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A          116 DFVREGLNQIFKF-HNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEEEETTEEEEEE-ECTTTCSCCCCBCEEEC
T ss_pred             EEEcCCCcceEEE-eCCCCCcccCCCCCccC
Confidence            9999999999999 99999999999999974

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=1.3e-37  Score=228.08  Aligned_cols=108  Identities=43%  Similarity=0.733  Sum_probs=102.1

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD  132 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID  132 (164)
                      |+|+|||+|+++|++++++++. ++.+|||+|+++||+|++|.|.+++++.++|++++.+|++|+||+.+++||+|++||
T Consensus         7 ~~i~iT~~A~~~i~~l~~~~~~-~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~ID   85 (114)
T 2apn_A            7 VPLTFTDAAANKVKSLISEEEN-TDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVD   85 (114)
T ss_dssp             CSCEECSHHHHHHHHHHHHHTC-SSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEE
T ss_pred             CcEEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEE
Confidence            7899999999999999988763 467999999999999999999999987899999999999999999999999999999


Q ss_pred             eeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188          133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (164)
Q Consensus       133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~  162 (164)
                      |++++.+++|+| +|||++.+||||+||++
T Consensus        86 y~~~~~g~~F~~-~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           86 YTEGLEGSRFTV-NNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EECSSSCCEEEE-ECHHHHCCCCCCCCSCC
T ss_pred             EEcCCCcceEEE-eCCCCCcCCCCCCCccC
Confidence            999999999999 99999999999999974

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.95  E-value=4.8e-28  Score=180.35  Aligned_cols=100  Identities=22%  Similarity=0.290  Sum_probs=93.0

Q ss_pred             CCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEe--cCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC
Q 031188           51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVE--TGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG  128 (164)
Q Consensus        51 ~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~--~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g  128 (164)
                      .+|+|+||++|+++|++++++++. ++.+|||+|+  ++|  ||+|.|.|+++ +++|.+++.+|++|+||+.+++||+|
T Consensus        19 ~~m~ItiT~~Aa~~ik~ll~~~~~-~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G   94 (125)
T 2k4z_A           19 SHMMFKLTPAAAEQVLKAAKQGGT-EGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQ   94 (125)
T ss_dssp             CSSCEEECHHHHHHHHHHHHHSSS-TTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTT
T ss_pred             CCCEEEECHHHHHHHHHHHhhCCC-CCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCC
Confidence            459999999999999999988763 3578999999  888  99999999987 89999999999999999999999999


Q ss_pred             cEEEeee-cCccceEEEccCCCCCCCCC
Q 031188          129 ATVDYVE-ELIRSAFVVSTNPSAVGGCS  155 (164)
Q Consensus       129 ~tIDy~e-~~~g~gF~i~~nPn~~~~Cg  155 (164)
                      ++|||++ ++.+++|+| +|||+++.|.
T Consensus        95 ~~IDy~~~~l~g~gF~~-~NPna~~~~p  121 (125)
T 2k4z_A           95 TTLDYVELEPGQFHFIF-LNPRDPTYRP  121 (125)
T ss_dssp             EEEEEEEEETTEEEEEE-ECSSSCSSCC
T ss_pred             CEEEEEeCCCCcCeEEE-CCCCCCccCC
Confidence            9999999 999999999 9999998885

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.84  E-value=1.7e-21  Score=145.52  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=85.7

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecC-------CCCC-eEEEEeecCCCCC----CceEEEeCCeEEEEcC
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETG-------GCSG-FQYAFDLDYKINP----DDRIFEKDGVKLVVDN  120 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~-------GCsG-~~y~l~l~~~~~~----dD~v~e~~Gi~v~VD~  120 (164)
                      |.|+|||+|+++|++++..++  ....||+. +++       ||+| +.|.|.+++++.+    +|++++.+|++|+||+
T Consensus         3 M~ItlT~~A~~~l~~~l~~~~--~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~   79 (128)
T 2p2e_A            3 LKITVTDDAAKKLQRYTDDSN--AVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKG   79 (128)
T ss_dssp             CEEEECHHHHHHHHHHHTCTT--EEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECG
T ss_pred             cEEEECHHHHHHHHHHHhcCC--ceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECc
Confidence            789999999999999998874  13578998 666       7999 6999999988877    8999999999999999


Q ss_pred             CcccccCC-cEEEeeecC----ccce-EEEccCCCCC
Q 031188          121 ISYDFVKG-ATVDYVEEL----IRSA-FVVSTNPSAV  151 (164)
Q Consensus       121 ~s~~~L~g-~tIDy~e~~----~g~g-F~i~~nPn~~  151 (164)
                      .++.||+| ++|||+++.    ++++ |.| .|||++
T Consensus        80 ~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~-~NPN~~  115 (128)
T 2p2e_A           80 YSKMYMDDNMKISLNTNNSLLRLTGDNSGE-LMPALS  115 (128)
T ss_dssp             GGGGGSCSEEEEEECSSSSCEEEEETTTEE-EEEEEC
T ss_pred             chHHhhCCCeEEEEeCCCceEEecCCccEE-ECCCCe
Confidence            99999996 999999998    8999 999 899986

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.81  E-value=5.7e-21  Score=144.87  Aligned_cols=90  Identities=20%  Similarity=0.393  Sum_probs=73.2

Q ss_pred             CCeeeeCHHHHHHHHHHHhccCCCCCceE-------EEEEecCCCC-CeEEEEeecCCCCCC-ceEEEeC-CeEEEEcCC
Q 031188           52 LDSIHMTDNFIKRMKELQASETSDNKAML-------RLGVETGGCS-GFQYAFDLDYKINPD-DRIFEKD-GVKLVVDNI  121 (164)
Q Consensus        52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~L-------Rl~v~~~GCs-G~~y~l~l~~~~~~d-D~v~e~~-Gi~v~VD~~  121 (164)
                      ||.|+|||+|+++|++++..++   ..+|       |+.++++||+ |+.|.|.+++++.++ |.+++.+ |++|+||+.
T Consensus         3 ~M~ItlTd~Aa~~ik~~l~~~~---~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~   79 (141)
T 2qgo_A            3 LLNIKFTDNAVDYLKRREILDK---ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDF   79 (141)
T ss_dssp             -CBEEECHHHHHHHHHTTCTTS---EEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHH
T ss_pred             ceEEEECHHHHHHHHHHHhhcc---ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECch
Confidence            6899999999999999998763   5688       9999999999 999999999988899 9999999 599999999


Q ss_pred             cccccC-CcEEEeeecCccceEEEccCCC
Q 031188          122 SYDFVK-GATVDYVEELIRSAFVVSTNPS  149 (164)
Q Consensus       122 s~~~L~-g~tIDy~e~~~g~gF~i~~nPn  149 (164)
                      +++||+ |++|||+++    .|.+ ++|.
T Consensus        80 sl~yLd~G~~IDy~~~----~l~L-ks~s  103 (141)
T 2qgo_A           80 DKTMLGPNMVMDYNAG----SLSL-SSDE  103 (141)
T ss_dssp             HHTTSCSSEEEEEETT----EEEE-EETT
T ss_pred             HHHHhcCCCEEeEECC----EEEE-cCCC
Confidence            999999 999999975    6877 6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	4e-23
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	2e-21

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 85.8 bits (212), Expect = 4e-23
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 54  SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
           SI ++D+   R+    A+        LRLGV T GCSG  Y  +   +  P+D +FE  G
Sbjct: 1   SITLSDSAAARVNTFLANR--GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 58

Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVG 152
           VK+VVD  S  F+ G  +D+V+E +   F   TNP+   
Sbjct: 59  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKF-TNPNVKD 96

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 80.9 bits (199), Expect = 2e-21
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 55  IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
             +TD  ++ +K++      +N  +LR+ V  GGCSGFQYA   D  +   D +FE DGV
Sbjct: 10  FKVTDKAVEEIKKVAQENNIENP-ILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68

Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNP 148
           K+V+D  S  +V GA +DYV + +   F +  NP
Sbjct: 69  KVVIDPFSMPYVNGAELDYVVDFMGGGFTI-RNP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.96
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.95
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	99.02

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=8e-30  Score=180.29  Aligned_cols=96  Identities=38%  Similarity=0.653  Sum_probs=90.9

Q ss_pred             eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEe
Q 031188           54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY  133 (164)
Q Consensus        54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy  133 (164)
                      .|+||++|+++|++++++++  ++.+|||.|+++||+||+|.|.++++++++|.+++.+|++|+||+.+..||+|++|||
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~--~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy   78 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDF   78 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTC--CCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             CEEECHHHHHHHHHHHHhCC--CCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEE
Confidence            38999999999999999875  4678999999999999999999998889999999999999999999999999999999


Q ss_pred             eecCccceEEEccCCCCCC
Q 031188          134 VEELIRSAFVVSTNPSAVG  152 (164)
Q Consensus       134 ~e~~~g~gF~i~~nPn~~~  152 (164)
                      ++++.+++|+| .|||+++
T Consensus        79 ~~~~~~~gF~f-~NPNak~   96 (97)
T d1s98a_          79 VKEGLNEGFKF-TNPNVKD   96 (97)
T ss_dssp             ECSSTTCEEEE-ECTTSCC
T ss_pred             eecCCcCceEE-ECCCCCC
Confidence            99999999999 9999975

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.95  E-value=5.7e-29  Score=176.85  Aligned_cols=96  Identities=36%  Similarity=0.712  Sum_probs=90.4

Q ss_pred             CCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcE
Q 031188           51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGAT  130 (164)
Q Consensus        51 ~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~t  130 (164)
                      .+.||+||++|+++|++++++++. ++.+|||.|+++||+||+|.|.++++++++|.+++.+|++|+||+.++.||+|++
T Consensus         6 ~~~mi~iT~~A~~~i~~l~~~~~~-~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~   84 (101)
T d1nwba_           6 QQFIFKVTDKAVEEIKKVAQENNI-ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAE   84 (101)
T ss_dssp             CCCCCEECHHHHHHHHHHHHTTTC-SSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCE
T ss_pred             cCCcEEECHHHHHHHHHHHHhcCC-CCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCE
Confidence            358999999999999999988763 5789999999999999999999998889999999999999999999999999999


Q ss_pred             EEeeecCccceEEEccCC
Q 031188          131 VDYVEELIRSAFVVSTNP  148 (164)
Q Consensus       131 IDy~e~~~g~gF~i~~nP  148 (164)
                      |||+++..+++|+| .||
T Consensus        85 IDy~~~~~~~~F~f-~NP  101 (101)
T d1nwba_          85 LDYVVDFMGGGFTI-RNP  101 (101)
T ss_dssp             EEEEEETTEEEEEE-ECC
T ss_pred             EEEeecCCCCeEEE-eCc
Confidence            99999999999999 898

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=99.02  E-value=1.2e-09  Score=78.49  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEe--------cCCCC-CeEEEEeecCC----CCCCceEEEeCCeEEEEc
Q 031188           53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVE--------TGGCS-GFQYAFDLDYK----INPDDRIFEKDGVKLVVD  119 (164)
Q Consensus        53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~--------~~GCs-G~~y~l~l~~~----~~~dD~v~e~~Gi~v~VD  119 (164)
                      |.|+||++|+++|++.+...    .+.|.|.++        ++||+ |-.|.|.+.++    ..+.|+.++.+-.+|++.
T Consensus         1 M~ItiT~~A~~~L~~~~~~~----~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~   76 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDS----NAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYK   76 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCT----TEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEEC
T ss_pred             CEEEECHHHHHHHHHhhCCC----CCEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEc
Confidence            78999999999999988764    356777766        57786 55799998754    235678899988899999


Q ss_pred             CCcccccCC-cEEEeeecCccceEEEccCCC
Q 031188          120 NISYDFVKG-ATVDYVEELIRSAFVVSTNPS  149 (164)
Q Consensus       120 ~~s~~~L~g-~tIDy~e~~~g~gF~i~~nPn  149 (164)
                      +....||++ ++|||.+..  ..|.+ +.|+
T Consensus        77 ~~~~~ffd~~m~ld~~~~~--~~l~L-kSd~  104 (118)
T d2p2ea1          77 GYSKMYMDDNMKISLNTNN--SLLRL-TGDN  104 (118)
T ss_dssp             GGGGGGSCSEEEEEECSSS--SCEEE-EETT
T ss_pred             ccchhhcCCCcEEEEcCCC--CEEEE-eCCC
Confidence            999999985 899998653  56777 6554