Citrus Sinensis ID: 031191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MSVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACSSSYFQ
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHcccccEEEEccccccccccEEccccccccEEEEEcccccccHHcHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccHccccHHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHcccEEEEEHHHccccccccccHHHcccccHHcccccccccccccHHHHHHHccccccEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSVSLVFSTtvttlplqevlcpqWQTHFLEHmesinpdspnqltLQQQLttdidfnslqfdygcegndqsnsvasgldnsssvgmrMNSVEISeslsqescaickdefslhseakqlpcnhlyhsecilpclshqsscplcrfqlpminpsnvvsWACSSSYFQ
Flexible Loop (DISEMBL)
msvslvfsttvttlplqeVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACSSSYFQ
Low Complexity Region (SEG)
MsvslvfsttvttlplQEVLCPQWQTHFLEHMESINPDSPNqltlqqqlttDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACSSSYFQ
Disordered region (IsUnstruct)
****LVFSTTVTTLPLQEVLCPQWQTHFLEHM************LQQQLTTDIDFNSLQFDYGC************************************CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACS*****
Disordered Region (DISOPRED)
**************P***VLCPQWQTH**********************TTDIDFNSLQFDYGC*********************************QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL*******************
Disordered Region (DISEMBL)
MSVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACSSSYFQ
Disordered Region (DISPRO)
*SVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWACSSSYFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
P0CH30	338	E3 ubiquitin-protein liga	N/A	no	0.304	0.147	0.54	8e-12
Q8LPN7	328	E3 ubiquitin-protein liga	no	no	0.304	0.152	0.52	2e-11
Q9SPL2	334	E3 ubiquitin-protein liga	no	no	0.274	0.134	0.533	5e-10
Q9BV68	326	RING finger protein 126 O	yes	no	0.274	0.138	0.511	1e-09
Q0II22	313	RING finger protein 126 O	yes	no	0.274	0.143	0.511	2e-09
Q6IRP0	312	RING finger protein 126-B	N/A	no	0.274	0.144	0.444	4e-09
Q6DIP3	311	RING finger protein 126 O	yes	no	0.274	0.144	0.444	6e-09
Q91YL2	313	RING finger protein 126 O	yes	no	0.274	0.143	0.488	6e-09
Q6GPV5	156	E3 ubiquitin-protein liga	N/A	no	0.310	0.326	0.509	1e-08
Q9Y4L5	304	E3 ubiquitin-protein liga	no	no	0.274	0.148	0.466	1e-08

>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
           CA+C D+F   +EAKQ+PC HLYH +C+LP L   +SCP+CR +LP  +P
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDP 273

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.
Gossypium hirsutum (taxid: 3635)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
           CA+C DEF   S+ KQ+PC H++H +C+LP L   +SCP+CRF+LP  +P
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDP 265

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           CA+CKD   +    K+LPC H YH +CI+P L  ++SCP+CRFQL
Sbjct: 257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. Probably forms a minimal ubiquitin ligase complex in cooperation with the E2 enzyme UBC8. Its interaction with COP1 suggests that it may participate in proteasome-mediated degradation of HY5 in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CKD+++L    +QLPCNHL+H  CI+P L    SCP+CR  L
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273

Homo sapiens (taxid: 9606)

>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CKD++ L    +QLPCNHL+H  CI+P L    SCP+CR  L
Sbjct: 232 CPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276

Bos taurus (taxid: 9913)

>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CK+++++    +QLPCNHL+H++CI+P L    +CP+CR  L
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272

Xenopus laevis (taxid: 8355)

>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CK+++++    +QLPCNHL+H++CI+P L    +CP+CR  L
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271

Xenopus tropicalis (taxid: 8364)

>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CK++++L    +QLPCNHL+H  CI+P L    SCP+CR  L
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275

Mus musculus (taxid: 10090)

>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
            C +C  EF      +QLPC HL+HS CILP L   +SCPLCR +LP  +P
Sbjct: 78  KCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSP 128

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           C +CK+++++  E +QLPCNH +HS CI+P L    +CP+CR  L
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272

Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
449436239	334	PREDICTED: uncharacterized protein LOC10	0.426	0.209	0.540	3e-15
449489092	333	PREDICTED: uncharacterized LOC101219937	0.426	0.210	0.540	4e-15
225450287	312	PREDICTED: E3 ubiquitin-protein ligase R	0.682	0.358	0.434	5e-15
356528603	207	PREDICTED: E3 ubiquitin-protein ligase R	0.725	0.574	0.407	4e-14
356538988	361	PREDICTED: E3 ubiquitin-protein ligase R	0.365	0.166	0.548	1e-13
356542365	361	PREDICTED: E3 ubiquitin-protein ligase R	0.365	0.166	0.564	2e-13
224054653	365	predicted protein [Populus trichocarpa]	0.426	0.191	0.486	2e-13
224121078	192	predicted protein [Populus trichocarpa]	0.762	0.651	0.364	3e-13
357454219	355	RING finger protein [Medicago truncatula	0.353	0.163	0.6	4e-13
357472841	369	RING finger protein [Medicago truncatula	0.365	0.162	0.596	7e-13

>gi|449436239|ref|XP_004135900.1| PREDICTED: uncharacterized protein LOC101219937 [Cucumis sativus]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 4/74 (5%)

Query: 85  MRMNSVEISESLSQES----CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPL 140
           M + +++++ +L  E     CAICKD+F L  EAKQLPC+HLYH +CILP LS+  SCPL
Sbjct: 143 MAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPL 202

Query: 141 CRFQLPMINPSNVV 154
           CRF+LP  +PS+ V
Sbjct: 203 CRFKLPSDDPSDRV 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489092|ref|XP_004158213.1| PREDICTED: uncharacterized LOC101219937 [Cucumis sativus]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 4/74 (5%)

Query: 85  MRMNSVEISESLSQES----CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPL 140
           M + +++++ +L  E     CAICKD+F L  EAKQLPC+HLYH +CILP LS+  SCPL
Sbjct: 142 MAIPTIKVTSALLDEDPVLICAICKDQFLLEVEAKQLPCSHLYHPDCILPWLSNHDSCPL 201

Query: 141 CRFQLPMINPSNVV 154
           CRF+LP  +PS+ V
Sbjct: 202 CRFKLPSDDPSDRV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450287|ref|XP_002271062.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 17/129 (13%)

Query: 28  FLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRM 87
           F  H E+   DSP    L   LT   D N+       +GND S+       N +SV    
Sbjct: 73  FSFHSENFLLDSPYLHRLIHHLTHPSDTNN-------DGNDSSDLPPPRYLNPNSVAASR 125

Query: 88  NSVE------ISESLSQES----CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSS 137
            S+E      I+ S  Q      CA+CKD+F +  EAK+LPCNH+YHS+CILP LS Q+S
Sbjct: 126 ASLEALPTFKITPSFLQLDPILFCAVCKDQFVVDVEAKRLPCNHIYHSDCILPWLSQQNS 185

Query: 138 CPLCRFQLP 146
           CPLCRF+LP
Sbjct: 186 CPLCRFRLP 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528603|ref|XP_003532889.1| PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Glycine max]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 77/152 (50%), Gaps = 33/152 (21%)

Query: 1   MSVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQF 60
           MSVSL       TLP   +LCP   THFLE M     DSP   TL Q  T    F+ +  
Sbjct: 14  MSVSL-------TLPPSPLLCPHCHTHFLELM-----DSP---TLSQNDTESSLFDVVFQ 58

Query: 61  DYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESL-------SQESCAICKDEFSLHSE 113
           D               L+  SS    + S+ ++ SL           CA+CKD+ + H+E
Sbjct: 59  D-----------ALLLLNPPSSKPRPLPSLHVTPSLLSSLDPNGVVRCAVCKDQITPHAE 107

Query: 114 AKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           AKQLPC HLYHS+CI P L   +SCPLCRF+L
Sbjct: 108 AKQLPCKHLYHSDCITPWLELHASCPLCRFRL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538988|ref|XP_003537982.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Glycine max]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 49/62 (79%), Gaps = 2/62 (3%)

Query: 87  MNSVEISES--LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQ 144
           M +VEI E+   ++  CA+CK+ F LH+EA++LPC H+YHS+CILP LS ++SCP+CR +
Sbjct: 168 MPTVEIGETHVETEAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHE 227

Query: 145 LP 146
           LP
Sbjct: 228 LP 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542365|ref|XP_003539637.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Glycine max]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 87  MNSVEISES--LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQ 144
           M +VEI E+   +   CA+CK+ F LH+EA++LPC H+YHSECILP LS ++SCP+CR +
Sbjct: 166 MPTVEIGETHVETDAHCAVCKEVFELHAEARELPCKHIYHSECILPWLSMRNSCPVCRHE 225

Query: 145 LP 146
           LP
Sbjct: 226 LP 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054653|ref|XP_002298344.1| predicted protein [Populus trichocarpa] gi|222845602|gb|EEE83149.1| predicted protein [Populus trichocarpa]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 80  SSSVGMRMNSVEISES--LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSS 137
           S +V   M SVEI+E+  +S+  CA+CK+ F +  EA+++PC H+YHS+CILP L+ ++S
Sbjct: 155 SKAVVESMPSVEINETHVVSETYCAVCKEAFEIGDEAREMPCKHIYHSDCILPWLAMRNS 214

Query: 138 CPLCRFQLPMIN 149
           CP+CR +LP+ N
Sbjct: 215 CPVCRHELPVDN 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121078|ref|XP_002330898.1| predicted protein [Populus trichocarpa] gi|222872720|gb|EEF09851.1| predicted protein [Populus trichocarpa]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 81/151 (53%), Gaps = 26/151 (17%)

Query: 20  LCPQWQTHFLEHMESINP-----------DSPNQLTLQQQLTTDIDFNSLQFDYGCEGND 68
           LCP     FLE M+ I             DSP+ L   Q L T+   +       CE ++
Sbjct: 30  LCPHCHHDFLELMDPIPTSTAADTTTFLLDSPSFLNFLQHLNTNSHCD-------CEDDN 82

Query: 69  QSNSVASGLDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECI 128
            + ++ S +    ++ +    +E+   L    CA+CKD+F +  EAKQLPC+HLYH  CI
Sbjct: 83  INATIDSII---PTIKITSCMLEMDPMLV---CAVCKDQFLIDVEAKQLPCSHLYHPGCI 136

Query: 129 LPCLSHQSSCPLCRFQL--PMINPSNVVSWA 157
           LP LS+ +SCPLCRFQL  P++   N+ +W+
Sbjct: 137 LPWLSNHNSCPLCRFQLQTPVVREENLENWS 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454219|ref|XP_003597390.1| RING finger protein [Medicago truncatula] gi|87241270|gb|ABD33128.1| Zinc finger, RING-type; Thioredoxin-related [Medicago truncatula] gi|355486438|gb|AES67641.1| RING finger protein [Medicago truncatula] gi|388498558|gb|AFK37345.1| unknown [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%), Gaps = 2/60 (3%)

Query: 89  SVEI--SESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
           +VEI  SE  S+  CA+CK++F L SEA+++PCNHLYHS+CILP LS ++SCP+CR +LP
Sbjct: 175 TVEITDSEMESEIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELP 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472841|ref|XP_003606705.1| RING finger protein [Medicago truncatula] gi|355507760|gb|AES88902.1| RING finger protein [Medicago truncatula]

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 50/62 (80%), Gaps = 2/62 (3%)

Query: 87  MNSVEI-SESLSQE-SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQ 144
           M +VEI  E +S E  CA+CK+EF LH+EA++LPC HLYHS+CILP L+ ++SCP+CR +
Sbjct: 165 MPTVEICEEHVSCELHCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVRNSCPVCRHE 224

Query: 145 LP 146
           LP
Sbjct: 225 LP 226

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2101447	306	AT3G60080 [Arabidopsis thalian	0.536	0.287	0.404	4.3e-18
DICTYBASE|DDB_G0280089	457	DDB_G0280089 "RING zinc finger	0.274	0.098	0.6	1.7e-15
TAIR|locus:2193874	351	AT1G55530 [Arabidopsis thalian	0.335	0.156	0.5	2.3e-15
TAIR|locus:2131463	356	AT4G26400 [Arabidopsis thalian	0.542	0.25	0.408	2.3e-15
TAIR|locus:2058465	328	RHC1A "RING-H2 finger C1A" [Ar	0.341	0.170	0.578	2.3e-15
TAIR|locus:2092231	328	AT3G19950 [Arabidopsis thalian	0.304	0.152	0.52	1.1e-14
TAIR|locus:2102569	320	RZF1 "AT3G56580" [Arabidopsis	0.304	0.156	0.6	1.7e-14
TAIR|locus:2050522	180	AT2G44330 [Arabidopsis thalian	0.432	0.394	0.44	3.8e-14
TAIR|locus:2159320	419	AT5G60820 [Arabidopsis thalian	0.280	0.109	0.543	1.2e-13
TAIR|locus:2063912	401	RHC2A "RING-H2 finger C2A" [Ar	0.304	0.124	0.56	1.8e-13

TAIR|locus:2101447 AT3G60080 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 40/99 (40%), Positives = 62/99 (62%)

Query:    58 LQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESL---SQES-------CAICKDE 107
             L  D     +  S+S +S L  SS +   + +++IS SL   + +S       CA+CK++
Sbjct:   117 LASDNSGSSSSSSSSSSSSLLKSSDIDS-IPTIQISSSLLCSTDDSDPDSVLLCAVCKED 175

Query:   108 FSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             F +   A++LPC+H+YHS+CI+P LS  +SCPLCRF+LP
Sbjct:   176 FIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELP 214

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

DICTYBASE|DDB_G0280089 DDB_G0280089 "RING zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query:   101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
             CA+CKDEF    +  +LPC HLYH ECILP L   +SCP+CRF+L
Sbjct:   356 CAVCKDEFKWGDDYIELPCQHLYHPECILPWLEQHNSCPVCRFEL 400

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2193874 AT1G55530 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 29/58 (50%), Positives = 43/58 (74%)

Query:    89 SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             +V+I E+L    C++C D+F + +EAK +PC H +HS+C+LP L   SSCP+CR+QLP
Sbjct:   214 TVKIEETLQ---CSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSCPVCRYQLP 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2131463 AT4G26400 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
 Identities = 38/93 (40%), Positives = 54/93 (58%)

Query:    55 FNSLQFDYGCEGNDQSNSVASG-LDNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSE 113
             F     D+  E    ++S+  G L     V   + +V+ISESL    C+IC D+F   SE
Sbjct:   197 FVGSSLDHLLEHLADNDSIRHGSLPARKEVVDNLPTVKISESLQ---CSICLDDFDKGSE 253

Query:   114 AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             AK++PC H +H  CI+P L   SSCP+CR++LP
Sbjct:   254 AKEMPCKHKFHIRCIVPWLELHSSCPVCRYELP 286

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2058465 RHC1A "RING-H2 finger C1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query:    97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN-PSN 152
             S  +C +CKDEF L SEAKQ+PCNH+YHS+CI+P L   +SCP+CR +LP  + PS+
Sbjct:   186 SDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPSASGPSS 242

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2092231 AT3G19950 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query:   101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
             CA+C DEF   S+ KQ+PC H++H +C+LP L   +SCP+CRF+LP  +P
Sbjct:   216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDP 265

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2102569 RZF1 "AT3G56580" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 30/50 (60%), Positives = 39/50 (78%)

Query:    97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             S   C +CKDEF L SEAKQ+PC+H+YHS+CI+P L   +SCP+CR +LP
Sbjct:   182 SDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELP 231

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:1902006 "negative regulation of proline biosynthetic process" evidence=IMP

TAIR|locus:2050522 AT2G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 33/75 (44%), Positives = 54/75 (72%)

Query:    77 LDNSSSVG-MRMNSVEISESLSQES---CAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132
             LD   S+  ++++S  +S + S +S   CAIC+++F +   A++LPCNHLYH++CI+P L
Sbjct:    68 LDPMESLPTIKISSSMLSSASSDDSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWL 127

Query:   133 SHQSSCPLCRFQLPM 147
             +  +SCPLCR +LP+
Sbjct:   128 TSHNSCPLCRVELPV 142

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2159320 AT5G60820 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query:   101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             CA+CK+E  +  E  +LPC H YHSECI+P L  +++CP+CRF+LP
Sbjct:   372 CAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFELP 417

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2063912 RHC2A "RING-H2 finger C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 28/50 (56%), Positives = 40/50 (80%)

Query:    97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
             SQ  CA+CK+ F L S A+++PCNH+YH +CILP L+ ++SCP+CR +LP
Sbjct:   197 SQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELP 246

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003722001 SubName- Full=Chromosome chr13 scaffold_149, whole genome shotgun sequence; (256 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-07
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	6e-06
smart00184	40	smart00184, RING, Ring finger	2e-05
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	4e-05
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	5e-05
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-04
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-04

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 99  ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
           + C IC DEF    E   LPC H++H EC+   L   ++CPLCR
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCR 142
           C IC +EF        LPC H++   CI   L   +++CPLCR
Sbjct: 2   CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 97  SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
            +  C IC D           PC H++  ECIL  L  +S CP+CR
Sbjct: 1   EELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 90  VEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILP-CLSHQSSCPLCRFQLP 146
               E+     CAIC   F  +   + LPC+H +H  C+    L + + CP+CR  +P
Sbjct: 315 ERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLC 141
           C IC +E+    +   LPC H +   CI   L S  ++CP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 101 CAICKDEF----------SLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
           C IC DE            L    K+LPC H+ H  C+   L  Q +CP+CR  +     
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349

Query: 151 SNVV 154
           S   
Sbjct: 350 SPTP 353

Length = 491

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 101 CAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRF 143
           C ICKD F    +   L  C+H + S CI  CLS+Q  CPLCR 
Sbjct: 29  CHICKDFF----DVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRA 68

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 85  MRMNSVEI-SESLSQESCAICKDEFSLHSEAKQLP----------CNHLYHSECILPCLS 133
            + N+V + S  +  + CAIC++ F       + P          C H +H  CI   L 
Sbjct: 5   KKWNAVALWSWDIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLK 64

Query: 134 HQSSCPLCR 142
            +++CPLCR
Sbjct: 65  TRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLC 141
           C IC +E         LPC HL+ S+CIL  L   + +CPLC
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.71
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.67
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.45
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.45
PHA02929	238	N1R/p28-like protein; Provisional	99.41
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.34
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.24
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.21
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.21
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.2
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.18
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.18
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.09
PF14634	44	zf-RING_5: zinc-RING finger domain	99.07
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	99.04
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.02
PHA02926	242	zinc finger-like protein; Provisional	99.0
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.0
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.99
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.96
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.95
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.86
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.83
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.65
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.63
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.62
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.61
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.57
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.54
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.53
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.52
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.45
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.44
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.36
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.32
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.27
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.25
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.22
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.2
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.17
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.08
KOG0825	1134	consensus PHD Zn-finger protein [General function	98.03
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	98.02
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.0
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.95
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.91
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.82
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.63
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.48
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	97.38
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.22
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.21
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.19
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	97.18
COG5152	259	Uncharacterized conserved protein, contains RING a	97.12
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	97.09
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.06
KOG2660	331	consensus Locus-specific chromosome binding protei	97.05
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.01
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.71
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.7
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.65
PHA02862	156	5L protein; Provisional	96.62
PHA03096	284	p28-like protein; Provisional	96.56
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.56
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.43
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.34
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.21
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	96.17
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.12
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.0
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.97
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.97
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.89
KOG4739	233	consensus Uncharacterized protein involved in syna	95.83
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
PF14369	35	zf-RING_3: zinc-finger	95.56
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	94.98
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.96
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.93
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	94.88
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.86
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.32
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.05
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	93.96
PF04641	260	Rtf2: Rtf2 RING-finger	93.94
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.76
KOG1940	276	consensus Zn-finger protein [General function pred	93.57
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.29
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.09
KOG1609	323	consensus Protein involved in mRNA turnover and st	92.59
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	92.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.31
KOG3002	299	consensus Zn finger protein [General function pred	91.83
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	89.82
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.45
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.19
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.16
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	88.73
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	87.56
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	87.51
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	87.3
KOG3899	381	consensus Uncharacterized conserved protein [Funct	87.29
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.93
KOG3053	293	consensus Uncharacterized conserved protein [Funct	85.7
KOG0269	839	consensus WD40 repeat-containing protein [Function	83.02
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	81.52
KOG3005	276	consensus GIY-YIG type nuclease [General function	80.73
KOG0825	1134	consensus PHD Zn-finger protein [General function	80.73
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	80.1

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=8.4e-18  Score=137.68  Aligned_cols=72  Identities=24%  Similarity=0.624  Sum_probs=61.8

Q ss_pred             hHHhhhCCceeeccCCCcc---ccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCCCCCCC
Q 031191           81 SSVGMRMNSVEISESLSQE---SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMINPSN  152 (164)
Q Consensus        81 ~~~~~~lp~~~~~~~~~~~---~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~~~~~  152 (164)
                      +....++|...+.......   .|+||||+|..|++++.|||+|.||..||++||.+. ..||+||+++......+
T Consensus       209 k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~  284 (348)
T KOG4628|consen  209 KRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE  284 (348)
T ss_pred             HHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence            3778889999998776553   999999999999999999999999999999999655 55999999886665443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.67  E-value=1.2e-17  Score=98.77  Aligned_cols=44  Identities=41%  Similarity=1.040  Sum_probs=40.6

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR  142 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR  142 (164)
                      ++|+||+++|..++.++.++|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            37999999999999999999999999999999998899999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.45  E-value=6.1e-14  Score=91.67  Aligned_cols=45  Identities=36%  Similarity=0.909  Sum_probs=36.4

Q ss_pred             ccccccccccccCC----------CccEEeCCCCccchhhHHHHhcCCCCCcccC
Q 031191           98 QESCAICKDEFSLH----------SEAKQLPCNHLYHSECILPCLSHQSSCPLCR  142 (164)
Q Consensus        98 ~~~C~ICl~~~~~~----------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR  142 (164)
                      ++.|+||++.+.+.          -.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            46799999999432          2344557999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.7e-14  Score=113.35  Aligned_cols=52  Identities=33%  Similarity=0.763  Sum_probs=47.8

Q ss_pred             CCccccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCC
Q 031191           96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPM  147 (164)
Q Consensus        96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~  147 (164)
                      ..+-+|+|||+.|-.+++.+.|||.|.||..||++|+. .+..||+||.++++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            33489999999999999999999999999999999996 78899999999875

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.41  E-value=1.7e-13  Score=107.86  Aligned_cols=65  Identities=26%  Similarity=0.459  Sum_probs=49.4

Q ss_pred             HHhhhCCceeecc-----CCCccccccccccccCCCc----cEEe-CCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           82 SVGMRMNSVEISE-----SLSQESCAICKDEFSLHSE----AKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        82 ~~~~~lp~~~~~~-----~~~~~~C~ICl~~~~~~~~----~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ..+..+|.+...-     ...+.+|+||++.+.+++.    ...+ +|+|.||..||.+|++.+.+||+||..+.
T Consensus       153 ~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        153 KFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             HHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            5566677665331     2234899999999876542    2344 59999999999999999999999999875

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=6.1e-13  Score=108.98  Aligned_cols=51  Identities=37%  Similarity=0.872  Sum_probs=44.0

Q ss_pred             cccccccccc-ccCC---------CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDE-FSLH---------SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~-~~~~---------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      +..|.||+|+ ++.+         .++..|||||+||.+|++-|++++.+||+||.++.-+
T Consensus       287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd  347 (491)
T COG5243         287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD  347 (491)
T ss_pred             CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence            4899999999 5554         3578999999999999999999999999999995333

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.24  E-value=6.9e-12  Score=75.95  Aligned_cols=45  Identities=36%  Similarity=0.820  Sum_probs=40.4

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ..|.||++...+   +..+||||. |+..|+.+|++.+..||+||+++.
T Consensus         3 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    3 EECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             SB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            589999999887   899999999 999999999999999999999875

...

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.4e-12  Score=97.71  Aligned_cols=49  Identities=24%  Similarity=0.566  Sum_probs=42.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC---CCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH---QSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~~~~  149 (164)
                      ..+|.|||+.-++   ++++.|||.||+.||.+||..   ...|||||..+..+.
T Consensus        47 ~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~   98 (230)
T KOG0823|consen   47 FFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT   98 (230)
T ss_pred             ceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence            3899999999888   989999999999999999943   457899999886654

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.6e-12  Score=100.33  Aligned_cols=49  Identities=31%  Similarity=0.736  Sum_probs=45.3

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      ..|.+||+..++   +..+||||+||+.||..|...+..||+||..+.+...
T Consensus       240 ~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  240 RKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CceEEEecCCCC---CCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            799999999988   9999999999999999999999999999998876644

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.20  E-value=9.1e-12  Score=94.73  Aligned_cols=50  Identities=24%  Similarity=0.527  Sum_probs=42.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC----------------CCCCcccCccCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH----------------QSSCPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----------------~~~CP~CR~~v~~~~~  150 (164)
                      ..+|+||++.+.+   +++++|||.||+.||.+|+..                ...||+||..+.....
T Consensus        18 ~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         18 DFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             ccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            4799999999987   788899999999999999842                3579999999866543

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.18  E-value=1.7e-11  Score=71.34  Aligned_cols=44  Identities=39%  Similarity=0.942  Sum_probs=35.9

Q ss_pred             ccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccC
Q 031191          100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQL  145 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v  145 (164)
                      +|+||++.+..  .....+|+|.||..|+..|++. +..||+||..+
T Consensus         1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            59999999833  3444459999999999999976 77899999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.18  E-value=1.2e-11  Score=71.16  Aligned_cols=38  Identities=39%  Similarity=0.947  Sum_probs=33.1

Q ss_pred             cccccccccCCCcc-EEeCCCCccchhhHHHHhcCCCCCccc
Q 031191          101 CAICKDEFSLHSEA-KQLPCNHLYHSECILPCLSHQSSCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~~~~~CP~C  141 (164)
                      |+||++.+.+   + +.++|||.||.+||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999988   6 678899999999999999889999998

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.09  E-value=6.5e-11  Score=69.18  Aligned_cols=38  Identities=37%  Similarity=0.843  Sum_probs=30.3

Q ss_pred             cccccccccCCCccEEeCCCCccchhhHHHHhcCC----CCCccc
Q 031191          101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ----SSCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~C  141 (164)
                      |+||++-|.+   ++.|+|||.|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999   9999999999999999999543    369987

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=99.07  E-value=1.1e-10  Score=68.78  Aligned_cols=44  Identities=25%  Similarity=0.770  Sum_probs=39.0

Q ss_pred             ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191          100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF  143 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~  143 (164)
                      .|+||++.|.+....+.++|||.|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999966667888899999999999999867789999985

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=6e-11  Score=103.85  Aligned_cols=50  Identities=36%  Similarity=0.852  Sum_probs=45.2

Q ss_pred             ccccccccccccCCCc--cEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSE--AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~--~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ...|+||+|.+..+.+  +.+|||+|+||..|+..|+++..+||.||..+..
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            3899999999999776  7899999999999999999999999999995533

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.02  E-value=2e-10  Score=76.36  Aligned_cols=50  Identities=32%  Similarity=0.777  Sum_probs=38.7

Q ss_pred             ccccccccccccC--------CCc-cEEe-CCCCccchhhHHHHhcC---CCCCcccCccCCC
Q 031191           98 QESCAICKDEFSL--------HSE-AKQL-PCNHLYHSECILPCLSH---QSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~--------~~~-~~~l-pC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~~  147 (164)
                      ++.|.||...|..        |+. +.++ .|+|.||..||.+|+..   +..||+||+++.-
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            5789999999873        222 3333 49999999999999964   5789999998643

>PHA02926 zinc finger-like protein; Provisional

Probab=99.00  E-value=1.8e-10  Score=88.92  Aligned_cols=49  Identities=27%  Similarity=0.653  Sum_probs=37.9

Q ss_pred             ccccccccccccCC----C-ccEEeC-CCCccchhhHHHHhcCC------CCCcccCccCC
Q 031191           98 QESCAICKDEFSLH----S-EAKQLP-CNHLYHSECILPCLSHQ------SSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~----~-~~~~lp-C~H~Fh~~CI~~Wl~~~------~~CP~CR~~v~  146 (164)
                      +.+|+||+|..-..    + ....|+ |+|.||..||..|.+.+      .+||+||..+.
T Consensus       170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            48999999987442    1 234554 99999999999999643      46999999764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.00  E-value=2.3e-10  Score=66.25  Aligned_cols=38  Identities=37%  Similarity=0.951  Sum_probs=33.9

Q ss_pred             cccccccccCCCccE-EeCCCCccchhhHHHHhc--CCCCCccc
Q 031191          101 CAICKDEFSLHSEAK-QLPCNHLYHSECILPCLS--HQSSCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~~-~lpC~H~Fh~~CI~~Wl~--~~~~CP~C  141 (164)
                      |+||++.+..   .. .++|+|.||..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC---CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999988   55 788999999999999997  66789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.99  E-value=3.5e-10  Score=63.48  Aligned_cols=38  Identities=37%  Similarity=0.961  Sum_probs=33.4

Q ss_pred             cccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCccc
Q 031191          101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~C  141 (164)
                      |+||++....   .+.++|+|.||..|++.|++ .+..||+|
T Consensus         1 C~iC~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKD---PVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCC---cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899998544   88899999999999999997 67789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=5.8e-10  Score=83.31  Aligned_cols=50  Identities=30%  Similarity=0.680  Sum_probs=42.7

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ..|+|||+.+..... +...|||+||..||+.-++....||+|++.|..+.
T Consensus       132 ~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             cCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            899999999987332 34669999999999999999999999998776554

>smart00504 Ubox Modified RING finger domain

Probab=98.95  E-value=6.1e-10  Score=70.11  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=42.4

Q ss_pred             ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191          100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      .|+||.+.+.+   ++.++|||.|++.||.+|++.+.+||+|+..+...+
T Consensus         3 ~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        3 LCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             CCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            69999999998   788999999999999999988899999999885443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.86  E-value=1.6e-09  Score=70.69  Aligned_cols=29  Identities=38%  Similarity=0.787  Sum_probs=26.9

Q ss_pred             CCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191          118 PCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus       118 pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      -|+|.||..||.+||..++.||++|+.+.
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            39999999999999999999999999763

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.83  E-value=3.1e-09  Score=89.39  Aligned_cols=50  Identities=40%  Similarity=0.772  Sum_probs=43.9

Q ss_pred             CCccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      .....|+||++.|..   ++.++|+|.||..||..|+.....||+||..+...
T Consensus        24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            334799999999987   77889999999999999998888999999987543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.8e-09  Score=81.08  Aligned_cols=50  Identities=28%  Similarity=0.653  Sum_probs=44.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHH-HhcCCCC-CcccCccCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILP-CLSHQSS-CPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~-Wl~~~~~-CP~CR~~v~~~~~  150 (164)
                      +..|+||++....   +..++|||+||..||.. |-+++.. ||+||+.+.++..
T Consensus       215 d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         215 DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            4789999999998   99999999999999999 9877766 9999998876654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.63  E-value=2.7e-08  Score=59.96  Aligned_cols=42  Identities=29%  Similarity=0.736  Sum_probs=33.4

Q ss_pred             ccccccccccCCCccEEeCCC-----CccchhhHHHHh--cCCCCCcccC
Q 031191          100 SCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCL--SHQSSCPLCR  142 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl--~~~~~CP~CR  142 (164)
                      .|.||++ ..+++....+||.     |.+|..|+.+|+  +.+.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4445556688974     889999999999  4456899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4.5e-09  Score=68.00  Aligned_cols=48  Identities=35%  Similarity=0.775  Sum_probs=37.4

Q ss_pred             cccccccccccC--------CC-ccEEeC-CCCccchhhHHHHhcC---CCCCcccCccCC
Q 031191           99 ESCAICKDEFSL--------HS-EAKQLP-CNHLYHSECILPCLSH---QSSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~--------~~-~~~~lp-C~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~  146 (164)
                      +.|.||..+|..        |+ -+.++- |.|.||..||.+|+..   +..||+||+.+.
T Consensus        21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            699999999864        22 244444 9999999999999943   467999999763

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.5e-08  Score=85.07  Aligned_cols=54  Identities=28%  Similarity=0.662  Sum_probs=44.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-----CCCCcccCccCCCCCCCCcc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-----QSSCPLCRFQLPMINPSNVV  154 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~CR~~v~~~~~~~~~  154 (164)
                      +..|+|||+....   +..+.|||+||..||-+++..     ...||+||..+..++...+.
T Consensus       186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~  244 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF  244 (513)
T ss_pred             CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence            4799999999888   777789999999999887733     36899999999887766543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.6e-08  Score=80.13  Aligned_cols=51  Identities=25%  Similarity=0.746  Sum_probs=42.6

Q ss_pred             ccccccccccccCCC-------ccEEeCCCCccchhhHHHHh--cCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHS-------EAKQLPCNHLYHSECILPCL--SHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~-------~~~~lpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~  148 (164)
                      +..|+||-..+....       +.-.|.|+|.||..||..|-  -.+.+||.|+..+..+
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            469999999887654       56789999999999999998  5678999998877443

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.54  E-value=5.3e-08  Score=57.05  Aligned_cols=38  Identities=34%  Similarity=0.914  Sum_probs=22.7

Q ss_pred             cccccccccC-CCccEEeCCCCccchhhHHHHhcC----CCCCc
Q 031191          101 CAICKDEFSL-HSEAKQLPCNHLYHSECILPCLSH----QSSCP  139 (164)
Q Consensus       101 C~ICl~~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP  139 (164)
                      |+||.+ |.. ...+++|+|||.|+.+||.++++.    ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 755 456788999999999999999963    23565

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.5e-08  Score=84.70  Aligned_cols=49  Identities=35%  Similarity=0.891  Sum_probs=39.3

Q ss_pred             cccccccccccCCCc--------------cEEeCCCCccchhhHHHHhc-CCCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSE--------------AKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~--------------~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~  147 (164)
                      ..|+|||.++.--.+              -..+||.|+||..|+.+|+. .+-.||+||.++++
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            789999998753111              12458999999999999998 66699999998865

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.52  E-value=7.6e-08  Score=80.96  Aligned_cols=58  Identities=26%  Similarity=0.709  Sum_probs=44.7

Q ss_pred             cccccccccccCCCc-cEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCcccccc
Q 031191           99 ESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWAC  158 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~~~~~~  158 (164)
                      .+|+|||+.+..... ++...|.|.||-.|+..|  ...+||+||....+...+.....+|
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~~ve~~~c~~c  234 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPSVVESSLCLAC  234 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcchhhhhhhhhh
Confidence            799999999987654 344559999999999999  7789999999776544444444433

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=8.5e-08  Score=65.56  Aligned_cols=47  Identities=32%  Similarity=0.651  Sum_probs=35.5

Q ss_pred             cccccccccccC------------CCc--cEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSL------------HSE--AKQLPCNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~------------~~~--~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      +.|+||..-+-+            .++  +..-.|+|.||..||.+||+.++.||+|.++.
T Consensus        47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            788888754421            122  33334999999999999999999999997764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.44  E-value=1.5e-07  Score=61.31  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~~  150 (164)
                      ..|+|+.+-+.+   ++++|+||.|.+.+|..|++. +.+||+++..+...+.
T Consensus         5 f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    5 FLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             cCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            689999999999   999999999999999999987 8999999998876543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.36  E-value=1.4e-07  Score=77.08  Aligned_cols=48  Identities=31%  Similarity=0.701  Sum_probs=44.6

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      -.|.||.+=|..   +.++||+|.||.-||...|..+..||.|+.++.+..
T Consensus        24 LRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   24 LRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            689999999999   999999999999999999999999999999886554

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.32  E-value=3e-07  Score=73.78  Aligned_cols=46  Identities=33%  Similarity=0.631  Sum_probs=42.5

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ..|-||-+-|..   +..++|||.||.-||...|..+..||+||.+...
T Consensus        26 lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          26 LRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             HHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            789999999998   8889999999999999999999999999987643

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.27  E-value=1.5e-07  Score=60.93  Aligned_cols=48  Identities=19%  Similarity=0.445  Sum_probs=22.7

Q ss_pred             ccccccccccc-CCCccEE-e---CCCCccchhhHHHHhcC---C--------CCCcccCccCC
Q 031191           99 ESCAICKDEFS-LHSEAKQ-L---PCNHLYHSECILPCLSH---Q--------SSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~-~~~~~~~-l---pC~H~Fh~~CI~~Wl~~---~--------~~CP~CR~~v~  146 (164)
                      .+|.||++.+. .++.+.. -   .|++.||..|+.+||..   .        ..||.|++++.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            58999999877 3333222 2   38999999999999942   1        25999998763

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.25  E-value=9.1e-07  Score=72.06  Aligned_cols=51  Identities=24%  Similarity=0.426  Sum_probs=38.2

Q ss_pred             cccccccccccCCCc--cEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSE--AKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~--~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~  149 (164)
                      ..|+||...-.....  ..+.+|||.||..||...+ .....||.|+..+...+
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            579999986433322  2233799999999999965 55678999999886654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=4.3e-07  Score=71.79  Aligned_cols=43  Identities=33%  Similarity=0.777  Sum_probs=38.7

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF  143 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~  143 (164)
                      ...|+||++.|..   +..+||+|.||..||..++.....||.||.
T Consensus        13 ~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   13 ELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccChhhHHHhhc---CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            3799999999999   588999999999999999886678999993

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.20  E-value=4.4e-07  Score=75.61  Aligned_cols=115  Identities=21%  Similarity=0.415  Sum_probs=71.3

Q ss_pred             cchhHHhhhcCCCCCCCChhhhhhhhcccccCCCchhhhhccCCCCCCCCCCCCCChhHHhhhCCceeeccCCC------
Q 031191           24 WQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLS------   97 (164)
Q Consensus        24 C~~~~le~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~------   97 (164)
                      |+.+++..=.++-.....+..+.|++.+...+...+|..+...|-.-.    ...++    .....+.++....      
T Consensus       294 WAIGYVt~dG~IlQTIP~NKpL~QaL~eG~keGFYlyPdGr~~npdLt----~l~~~----~p~d~i~VtqEQyeLYceM  365 (563)
T KOG1785|consen  294 WAIGYVTADGNILQTIPQNKPLFQALLEGHKEGFYLYPDGRDQNPDLT----GLCQP----PPQDRIKVTQEQYELYCEM  365 (563)
T ss_pred             eeEEEEcCCCceeeccCCCcHHHHHHHhccccceEECCCCccCCCChh----hccCC----CcccceeeeHHHHHHHHHc
Confidence            444444333333333344456778888888877777766555443221    11111    0011222222211      


Q ss_pred             --c-cccccccccccCCCccEEeCCCCccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191           98 --Q-ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS--HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 --~-~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~  149 (164)
                        . +.|-||-|.-++   +.+-||||..|..|+..|-.  ...+||.||.++....
T Consensus       366 gsTFeLCKICaendKd---vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  366 GSTFELCKICAENDKD---VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             cchHHHHHHhhccCCC---cccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence              1 899999998777   98999999999999999982  3679999999886653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.5e-07  Score=72.07  Aligned_cols=51  Identities=24%  Similarity=0.528  Sum_probs=42.9

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~~~  152 (164)
                      .+|+||+....-   ++.|+|+|.||.-||+.-. ..+.+|++||.++...-..+
T Consensus         8 ~eC~IC~nt~n~---Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~   59 (324)
T KOG0824|consen    8 KECLICYNTGNC---PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFE   59 (324)
T ss_pred             CcceeeeccCCc---CccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcc
Confidence            699999998666   7899999999999998876 55678999999997765444

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.17  E-value=3.8e-07  Score=82.70  Aligned_cols=48  Identities=31%  Similarity=0.858  Sum_probs=36.8

Q ss_pred             cccccccccccCCCc---cEEeC-CCCccchhhHHHHhc--CCCCCcccCccCC
Q 031191           99 ESCAICKDEFSLHSE---AKQLP-CNHLYHSECILPCLS--HQSSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~---~~~lp-C~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~  146 (164)
                      ++|+||..-+..-+.   -...+ |+|.||..|+.+|++  .+++||+||.++.
T Consensus      1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            999999988763111   12233 999999999999994  5678999998764

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.4e-06  Score=71.72  Aligned_cols=48  Identities=29%  Similarity=0.644  Sum_probs=42.6

Q ss_pred             ccccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..+|.|||.+..+   ..+|||.| --|..|.+.-.-+.+.||+||+++..-
T Consensus       290 gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            4899999999999   99999999 589999999877889999999988543

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.4e-07  Score=74.47  Aligned_cols=50  Identities=30%  Similarity=0.573  Sum_probs=42.2

Q ss_pred             CccccccccccccCCCccEEeC-CCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191           97 SQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~  149 (164)
                      .+..|+|||+-+..   .+..+ |.|.||.+||..-| ..++.||.||+.+..+-
T Consensus        42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            34799999999988   66666 99999999999988 66789999999776553

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.03  E-value=8.1e-07  Score=79.23  Aligned_cols=50  Identities=18%  Similarity=0.390  Sum_probs=44.0

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..|++|+..+.++......+|+|+||..||..|-+...+||+||..+...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            67888888888877777778999999999999999999999999987544

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.1e-06  Score=71.26  Aligned_cols=47  Identities=28%  Similarity=0.803  Sum_probs=35.3

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC---CCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ---SSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~---~~CP~CR~~v  145 (164)
                      ..|.||-+-+.....+.-.. |||+||..|+..|+...   ..||.||-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            58999955554444455555 99999999999999653   5799998433

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.00  E-value=1.7e-06  Score=54.51  Aligned_cols=42  Identities=36%  Similarity=0.858  Sum_probs=22.4

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      -.|++|.+-+..   ++.|. |.|.|+..||..-+.  ..||+|+.+.
T Consensus         8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa   50 (65)
T PF14835_consen    8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA   50 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred             cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence            479999999988   77665 999999999988543  4599998865

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.95  E-value=2e-06  Score=69.38  Aligned_cols=53  Identities=25%  Similarity=0.616  Sum_probs=44.0

Q ss_pred             CCccccccccccccCCCccEEeCCCCccchhhHHHHhc-----------------------CCCCCcccCccCCCC
Q 031191           96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-----------------------HQSSCPLCRFQLPMI  148 (164)
Q Consensus        96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-----------------------~~~~CP~CR~~v~~~  148 (164)
                      .....|.|||.-|.+++...+++|-|.||..|+.++|.                       ....||+||..+..+
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            33479999999999999999999999999999988663                       123699999987543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=4.6e-06  Score=69.17  Aligned_cols=49  Identities=31%  Similarity=0.757  Sum_probs=38.6

Q ss_pred             ccccccccccccCCC----ccEEeC-CCCccchhhHHHHh--cC-----CCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHS----EAKQLP-CNHLYHSECILPCL--SH-----QSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~----~~~~lp-C~H~Fh~~CI~~Wl--~~-----~~~CP~CR~~v~  146 (164)
                      +..|.||++...+..    ...+|| |.|.||..||..|-  ++     ...||.||....
T Consensus       161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            489999999887744    123456 99999999999998  44     478999998543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=1.1e-05  Score=67.49  Aligned_cols=46  Identities=35%  Similarity=0.829  Sum_probs=36.3

Q ss_pred             cccccccccccCC-Ccc-EEeCCCCccchhhHHHHh--cCCCCCcccCcc
Q 031191           99 ESCAICKDEFSLH-SEA-KQLPCNHLYHSECILPCL--SHQSSCPLCRFQ  144 (164)
Q Consensus        99 ~~C~ICl~~~~~~-~~~-~~lpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~  144 (164)
                      .+|+||++.|... +.. +.+-|+|.|..+||.+||  +....||.|...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            5899999999864 333 334599999999999999  334689999654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.4e-05  Score=71.28  Aligned_cols=48  Identities=23%  Similarity=0.630  Sum_probs=41.9

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~  149 (164)
                      -.|+.|-..+++   .++..|+|.||..||.+-+ -+...||.|...|..-+
T Consensus       644 LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  644 LKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             eeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            689999999998   8778899999999999988 56789999998885544

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=3.3e-05  Score=65.34  Aligned_cols=48  Identities=29%  Similarity=0.728  Sum_probs=44.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      +.+|.||+..+..   ++.+||||.||..||.+-+.....||.||..+..-
T Consensus        84 ef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   84 EFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             hhhhhhhHhhcCC---CccccccccccHHHHHHHhccCCCCcccccccccc
Confidence            4899999999988   99999999999999999889999999999998763

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=1.5e-05  Score=48.47  Aligned_cols=46  Identities=24%  Similarity=0.581  Sum_probs=35.8

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHh-cCCCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCL-SHQSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl-~~~~~CP~CR~~v~~  147 (164)
                      ++|.||+|...+   .+...|||. .|..|-.+-+ ..+..||+||+++.+
T Consensus         8 dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            699999998777   555669995 6777866544 478999999998743

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.48  E-value=8.5e-05  Score=46.06  Aligned_cols=40  Identities=25%  Similarity=0.572  Sum_probs=28.4

Q ss_pred             ccccccccccccCCCccEEe-CCCCccchhhHHHHh--cCCCCCcc
Q 031191           98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCL--SHQSSCPL  140 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl--~~~~~CP~  140 (164)
                      ...|+|.+..|++   ++.- .|+|.|-++.|.+|+  .....||+
T Consensus        11 ~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4789999999998   7765 599999999999999  34457998

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=4e-05  Score=56.82  Aligned_cols=27  Identities=30%  Similarity=0.810  Sum_probs=26.2

Q ss_pred             cccccccccccCCCccEEeCCCCccch
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHS  125 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~  125 (164)
                      .+|.||||++..|+++..|||..+||+
T Consensus       178 GECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  178 GECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             CcEEEEhhhccCCCceeccceEEEeec
Confidence            799999999999999999999999996

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=97.38  E-value=0.00012  Score=43.55  Aligned_cols=40  Identities=23%  Similarity=0.618  Sum_probs=27.9

Q ss_pred             cccccccccCCCccEEeCCC--C---ccchhhHHHHhc--CCCCCccc
Q 031191          101 CAICKDEFSLHSEAKQLPCN--H---LYHSECILPCLS--HQSSCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl~--~~~~CP~C  141 (164)
                      |-||++.-..++ ..+.||+  -   ..|..|+.+|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999887766 5567863  3   789999999994  56789887

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.22  E-value=9.8e-05  Score=61.72  Aligned_cols=45  Identities=33%  Similarity=0.897  Sum_probs=37.5

Q ss_pred             cccccccccccCCC-ccEEeCCCCccchhhHHHHhcCC--CCCcccCc
Q 031191           99 ESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQ--SSCPLCRF  143 (164)
Q Consensus        99 ~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~CR~  143 (164)
                      --|..|=+.+...+ ...-|||.|+||..|+...|.++  .+||-||+
T Consensus       366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            67999999887654 45679999999999999999544  68999994

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.21  E-value=0.00017  Score=62.38  Aligned_cols=53  Identities=21%  Similarity=0.555  Sum_probs=42.7

Q ss_pred             CccccccccccccCCCccEEeCCCCccchhhHHHHhc-----CCCCCcccCccCCCCCCCC
Q 031191           97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-----HQSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-----~~~~CP~CR~~v~~~~~~~  152 (164)
                      ....|.+|-++-++   .+...|.|.||+-||+.+..     .+-+||+|-..+..+...+
T Consensus       535 ~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  535 GEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             CceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            34799999998887   88888999999999988773     3568999988876654443

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.19  E-value=0.00017  Score=61.10  Aligned_cols=50  Identities=30%  Similarity=0.673  Sum_probs=42.9

Q ss_pred             cccccccccccCCCccEE-eCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS  151 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~  151 (164)
                      ..|++|...+.+   +.. ..|+|.||..|+..|+..+..||.|+..+......
T Consensus        22 l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   22 LLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             ccCccccccccC---CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            789999999998   666 47999999999999998899999998877555433

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=97.18  E-value=0.00019  Score=51.77  Aligned_cols=35  Identities=14%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             cccccccccccCCCccEEeCCC------CccchhhHHHHhc
Q 031191           99 ESCAICKDEFSLHSEAKQLPCN------HLYHSECILPCLS  133 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~------H~Fh~~CI~~Wl~  133 (164)
                      .+|.||++.+..++.++.++|+      |.||.+|+++|-+
T Consensus        27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            6999999999997777788875      8999999999953

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.12  E-value=0.00022  Score=54.67  Aligned_cols=44  Identities=23%  Similarity=0.554  Sum_probs=40.3

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ..|.||-.+|..   +++..|||.||..|..+-++....|-+|-+.-
T Consensus       197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            799999999999   98999999999999999999999999996643

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=97.09  E-value=0.00039  Score=41.44  Aligned_cols=44  Identities=25%  Similarity=0.604  Sum_probs=22.3

Q ss_pred             cccccccccCCCccEEeC--CCCccchhhHHHHhc-CCCCCcccCccC
Q 031191          101 CAICKDEFSLHSEAKQLP--CNHLYHSECILPCLS-HQSSCPLCRFQL  145 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~-~~~~CP~CR~~v  145 (164)
                      |++|.+++...+ ....|  |++..++.|...-++ .+..||-||++.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994433 23555  789999999888875 688999999864

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.00042  Score=54.13  Aligned_cols=50  Identities=22%  Similarity=0.578  Sum_probs=41.3

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcC--------CCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--------QSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--------~~~CP~CR~~v~~~~  149 (164)
                      ..|..|--.+..|+.++ |-|-|.||.+|+..|-..        .-.||.|..++.+..
T Consensus        51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            67999999999999885 459999999999999732        247999999886553

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.05  E-value=0.0001  Score=60.24  Aligned_cols=50  Identities=22%  Similarity=0.569  Sum_probs=41.6

Q ss_pred             CCccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           96 LSQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        96 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ....+|.+|-.=|-+   ..... |-|.||+.||.+.|...++||.|...+-..
T Consensus        13 n~~itC~LC~GYliD---ATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLID---ATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeec---chhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            344799999988888   55555 999999999999998899999998766443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.01  E-value=0.00044  Score=65.93  Aligned_cols=51  Identities=31%  Similarity=0.726  Sum_probs=40.2

Q ss_pred             CccccccccccccCCCccEEeCCCCccchhhHHHHhcCC----------CCCcccCccCCC
Q 031191           97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ----------SSCPLCRFQLPM  147 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----------~~CP~CR~~v~~  147 (164)
                      .++.|.||+.+--.....+.|.|+|+||.+|...-|+.+          -+||+|+..+..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            348999999887776777899999999999997655322          379999987754

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.71  E-value=0.0015  Score=48.41  Aligned_cols=59  Identities=32%  Similarity=0.728  Sum_probs=40.6

Q ss_pred             ccccccccccccCCCccEEeCCC--C---ccchhhHHHHh--cCCCCCcccCccCCCC-CCCCcccccccC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCN--H---LYHSECILPCL--SHQSSCPLCRFQLPMI-NPSNVVSWACSS  160 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~-~~~~~~~~~~~~  160 (164)
                      +..|-||.++-..  .  .-||.  .   .-|.+|+.+|+  .+...|+.|++++... ..-+..-|.++.
T Consensus         8 ~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~~W~~~~   74 (162)
T PHA02825          8 DKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKWRCSF   74 (162)
T ss_pred             CCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCccccccC
Confidence            4799999988432  2  34754  3   56999999999  4456899999987444 333444566554

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.70  E-value=0.00089  Score=60.75  Aligned_cols=46  Identities=24%  Similarity=0.596  Sum_probs=36.6

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC-------CCCcccCcc
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ-------SSCPLCRFQ  144 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~-------~~CP~CR~~  144 (164)
                      .+|.||.+.+...+.+..-. |-|+||..||.+|-+..       -.||.|...
T Consensus       192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            89999999998866554443 89999999999999431       259999743

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0022  Score=51.43  Aligned_cols=51  Identities=24%  Similarity=0.576  Sum_probs=39.3

Q ss_pred             CCccccccccccccCCCccEE-eCCCCccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191           96 LSQESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLS--HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        96 ~~~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~  149 (164)
                      ..+.+|++|-+....   +-+ .+|+|+||..||..-+.  ...+||.|-..+.+..
T Consensus       237 t~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cCCceeeccCCCCCC---CeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence            344899999998766   544 45999999999998764  4479999988776443

>PHA02862 5L protein; Provisional

Probab=96.62  E-value=0.0013  Score=48.05  Aligned_cols=47  Identities=23%  Similarity=0.588  Sum_probs=35.6

Q ss_pred             cccccccccccCCCccEEeCCC-----CccchhhHHHHh--cCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCL--SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~~  149 (164)
                      ..|-||.++-.+.    .-||.     ..-|.+|+.+|+  .++..|++|+.+...+.
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~   56 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK   56 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence            5799999985432    35653     578999999999  45678999999875443

>PHA03096 p28-like protein; Provisional

Probab=96.56  E-value=0.0011  Score=53.97  Aligned_cols=47  Identities=15%  Similarity=0.251  Sum_probs=34.0

Q ss_pred             cccccccccccCCC----ccEEeC-CCCccchhhHHHHhcCC---C---CCcccCccC
Q 031191           99 ESCAICKDEFSLHS----EAKQLP-CNHLYHSECILPCLSHQ---S---SCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~----~~~~lp-C~H~Fh~~CI~~Wl~~~---~---~CP~CR~~v  145 (164)
                      ..|.||++......    .-..|+ |.|.|+..||..|....   .   .||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence            68999999887632    344677 99999999999999432   3   455555443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.56  E-value=0.00089  Score=45.95  Aligned_cols=30  Identities=30%  Similarity=0.735  Sum_probs=26.4

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHH
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECIL  129 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~  129 (164)
                      ..|++|-..+.. ....+.||||.||..|++
T Consensus        79 ~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   79 TKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            689999999987 556788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0011  Score=53.62  Aligned_cols=44  Identities=25%  Similarity=0.538  Sum_probs=40.6

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ..|-||...|..   +++..|+|.||..|..+-++....|++|-+..
T Consensus       242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             cccccccccccc---chhhcCCceeehhhhccccccCCcceeccccc
Confidence            679999999999   99999999999999999999899999997754

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.34  E-value=0.0019  Score=52.45  Aligned_cols=47  Identities=28%  Similarity=0.643  Sum_probs=37.9

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHh-cCCCCCccc-CccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-SHQSSCPLC-RFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~C-R~~v~~~  148 (164)
                      ..|+.|-.-+..   ...+| |+|.||.+||..-| .....||.| |+++.-+
T Consensus       275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld  324 (427)
T COG5222         275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD  324 (427)
T ss_pred             ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence            689999888877   66677 89999999999877 677899999 4454433

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.21  E-value=0.003  Score=38.61  Aligned_cols=37  Identities=24%  Similarity=0.629  Sum_probs=30.0

Q ss_pred             CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191          111 HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus       111 ~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      +.+...+||+|..+..|..-+  +-+.||+|-+++...+
T Consensus        17 ~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen   17 GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence            344778999999999997765  6788999998886654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=96.17  E-value=0.002  Score=37.56  Aligned_cols=41  Identities=29%  Similarity=0.746  Sum_probs=23.1

Q ss_pred             cccccccccCCCccEEeCCCCccchhhHHHHhcCCC--CCccc
Q 031191          101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS--SCPLC  141 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~--~CP~C  141 (164)
                      |.+|.+....|+.-..-.|+-.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            667777776654443334999999999999996555  79987

; PDB: 3NW0_A 2CT0_A.

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0036  Score=52.02  Aligned_cols=47  Identities=26%  Similarity=0.440  Sum_probs=41.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      +..|+||...--.   .+..||+|.-|..||.+-|-..+.|=.|+..+..
T Consensus       422 d~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  422 DNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            4899999987655   6788999999999999999999999999998763

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.0032  Score=52.22  Aligned_cols=42  Identities=36%  Similarity=0.853  Sum_probs=33.8

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ..|.||+++..+   ..-+||||.-+  |..-- +...+||+||+.+.
T Consensus       306 ~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  306 DLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            899999999998   88999999866  55443 44566999998763

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0032  Score=53.06  Aligned_cols=35  Identities=29%  Similarity=0.623  Sum_probs=32.4

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS  133 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~  133 (164)
                      ..|.||+++.....-...+||+|+||+.|++.++.
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            89999999988878888999999999999999984

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0017  Score=52.49  Aligned_cols=40  Identities=33%  Similarity=0.688  Sum_probs=33.2

Q ss_pred             cccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ..|.||++...+   -+.|+||| +-|.+|-++    -+.||+||+-+
T Consensus       301 ~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr----m~eCPICRqyi  341 (350)
T KOG4275|consen  301 RLCAICMDAPRD---CVFLECGHMVTCTKCGKR----MNECPICRQYI  341 (350)
T ss_pred             HHHHHHhcCCcc---eEEeecCcEEeehhhccc----cccCchHHHHH
Confidence            789999999988   99999999 557777554    34899999865

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.0085  Score=47.51  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      ..|+||.+.+........|. |||+|+.+|+.+.++....||+|-.++.+.+.
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI  274 (303)
T ss_pred             eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence            78999999999977777775 99999999999999999999999888877654

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.83  E-value=0.0038  Score=49.17  Aligned_cols=49  Identities=22%  Similarity=0.539  Sum_probs=36.0

Q ss_pred             ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191          100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS  151 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~  151 (164)
                      .|..|.---. ++....+.|.|+||..|...-.  ...||+||+.+......
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~   53 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLN   53 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeeeeecc
Confidence            5776766555 6677777799999999987742  23899999987555443

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0073  Score=49.00  Aligned_cols=47  Identities=28%  Similarity=0.694  Sum_probs=39.2

Q ss_pred             cccccccccccCCC---ccEEeCCCCccchhhHHHHh-cCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHS---EAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~---~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v  145 (164)
                      ..|-||-++|..++   .++.|.|||.|+..|+.+-+ .....||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999999874   36778899999999999877 4446799999985

>PF14369 zf-RING_3: zinc-finger

Probab=95.56  E-value=0.0054  Score=34.14  Aligned_cols=19  Identities=32%  Similarity=0.705  Sum_probs=14.5

Q ss_pred             cCCCCCCCCCcchhHHhhh
Q 031191           14 LPLQEVLCPQWQTHFLEHM   32 (164)
Q Consensus        14 ~~~~~~~Cp~C~~~~le~~   32 (164)
                      ...+.+.||.|+.+|+|+|
T Consensus        17 ~~~~~~~CP~C~~gFvEei   35 (35)
T PF14369_consen   17 SPDSDVACPRCHGGFVEEI   35 (35)
T ss_pred             CCCCCcCCcCCCCcEeEeC
Confidence            3444456999999999976

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.98  E-value=0.015  Score=44.07  Aligned_cols=49  Identities=20%  Similarity=0.535  Sum_probs=31.9

Q ss_pred             cccccccccccCCCc----cEEeCCCCccchhhHHHHhcCC-----------CCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSE----AKQLPCNHLYHSECILPCLSHQ-----------SSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~----~~~lpC~H~Fh~~CI~~Wl~~~-----------~~CP~CR~~v~~  147 (164)
                      ..|.||..---+|-.    .-...|+.-||.-|+..||+.-           ..||.|..++.-
T Consensus       166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            456666532222221    2234599999999999999532           369999887643

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.96  E-value=0.019  Score=42.58  Aligned_cols=52  Identities=27%  Similarity=0.524  Sum_probs=37.1

Q ss_pred             ccccccccccccCCCccEEeC------------CC-CccchhhHHHHhcC------------------------------
Q 031191           98 QESCAICKDEFSLHSEAKQLP------------CN-HLYHSECILPCLSH------------------------------  134 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp------------C~-H~Fh~~CI~~Wl~~------------------------------  134 (164)
                      +..|+||||-...   .+.|-            |+ -.-|..|+++.-+.                              
T Consensus         2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T PF07800_consen    2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ   78 (162)
T ss_pred             CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence            3589999999887   44443            43 34578899886531                              


Q ss_pred             -CCCCcccCccCCCCCCCC
Q 031191          135 -QSSCPLCRFQLPMINPSN  152 (164)
Q Consensus       135 -~~~CP~CR~~v~~~~~~~  152 (164)
                       +..||+||.+|..+...+
T Consensus        79 ~~L~CPLCRG~V~GWtvve   97 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVVE   97 (162)
T ss_pred             ccccCccccCceeceEEch
Confidence             235999999998886554

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.93  E-value=0.029  Score=46.63  Aligned_cols=44  Identities=32%  Similarity=0.776  Sum_probs=37.5

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHH--HhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILP--CLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~--Wl~~~~~CP~CR~~v  145 (164)
                      ..|.||-+.+.-   ...+||+|.-|--|..+  .|-....||+||.+.
T Consensus        62 ~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          62 MNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            789999998776   88999999999999865  346778999999865

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=94.88  E-value=0.041  Score=46.16  Aligned_cols=68  Identities=16%  Similarity=0.338  Sum_probs=41.1

Q ss_pred             HHhhhCCceeec-cCCCccccccccccccC-------------CCcc----EEeC--CCCccchhhHHHHh--cC-----
Q 031191           82 SVGMRMNSVEIS-ESLSQESCAICKDEFSL-------------HSEA----KQLP--CNHLYHSECILPCL--SH-----  134 (164)
Q Consensus        82 ~~~~~lp~~~~~-~~~~~~~C~ICl~~~~~-------------~~~~----~~lp--C~H~Fh~~CI~~Wl--~~-----  134 (164)
                      +.+..=|..... +..+.+.|.-|+..-.+             |...    ...+  |.-++|.+|+.+|+  ++     
T Consensus       254 ~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~  333 (358)
T PF10272_consen  254 EQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHP  333 (358)
T ss_pred             HHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCCh
Confidence            344444555555 22334788889875433             1000    1112  45678999999998  22     


Q ss_pred             ------CCCCcccCccCCCCC
Q 031191          135 ------QSSCPLCRFQLPMIN  149 (164)
Q Consensus       135 ------~~~CP~CR~~v~~~~  149 (164)
                            +..||.||+.+...+
T Consensus       334 ~~Wl~~~~~CPtCRa~FCilD  354 (358)
T PF10272_consen  334 ETWLSGKCPCPTCRAKFCILD  354 (358)
T ss_pred             hhhhcCCCCCCCCcccceeee
Confidence                  347999999886554

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=0.0012  Score=55.16  Aligned_cols=51  Identities=25%  Similarity=0.537  Sum_probs=44.8

Q ss_pred             cccccccccccCC-CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLH-SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~-~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ..|+||.+.++.. +++..+-|+|.+|..|+.+||.....||.|+.+++...
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            8999999999886 66777789999999999999988999999999886543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.032  Score=45.90  Aligned_cols=44  Identities=18%  Similarity=0.512  Sum_probs=37.4

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ..|+||+.....   ...+. =|-+||..||.+.+...+.||+=-.+.
T Consensus       301 ~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  301 EVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccChhHHhccCC---CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            899999998777   55555 599999999999999999999865544

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.05  E-value=0.051  Score=33.17  Aligned_cols=32  Identities=25%  Similarity=0.651  Sum_probs=28.5

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHH
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILP  130 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~  130 (164)
                      ..|.+|-+.|.+++.+++-| |+-.+|+.|-..
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            58999999999888888988 999999999543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.96  E-value=0.03  Score=33.14  Aligned_cols=43  Identities=28%  Similarity=0.606  Sum_probs=25.8

Q ss_pred             cccccccccCCCccEEeCC-CCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191          101 CAICKDEFSLHSEAKQLPC-NHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC-~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      |--|+-....     ...| .|..|..|+...|.....||+|..+++.+
T Consensus         5 CKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen    5 CKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             --SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             ChhhhhcCCC-----eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            4455544433     4557 59999999999999999999999988654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.94  E-value=0.063  Score=43.08  Aligned_cols=51  Identities=18%  Similarity=0.463  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+|...+|......+.+ ||||+|-..+|..- +....||+|-.++...+
T Consensus       113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED  164 (260)
T ss_pred             eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence            38999999999665555555 69999999999996 33567999999887543

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.76  E-value=0.017  Score=52.34  Aligned_cols=50  Identities=28%  Similarity=0.586  Sum_probs=39.1

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcC--CCCCcccCccCCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--QSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--~~~CP~CR~~v~~~~~~~  152 (164)
                      ..|.||++ ..   .....+|+|.||.+|+..-+..  ...||.||..+..+....
T Consensus       455 ~~c~ic~~-~~---~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s  506 (674)
T KOG1001|consen  455 HWCHICCD-LD---SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS  506 (674)
T ss_pred             cccccccc-cc---cceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence            68999999 33   3778889999999999887732  346999999876665444

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.57  E-value=0.041  Score=44.50  Aligned_cols=49  Identities=35%  Similarity=0.697  Sum_probs=40.1

Q ss_pred             CCCccccccccccccCCCc-cEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191           95 SLSQESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRF  143 (164)
Q Consensus        95 ~~~~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~  143 (164)
                      ......|+||.+.+..+.. +..++|+|.-|..|.......+-+||+|.+
T Consensus       155 ~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  155 RSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             hcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3334669999998877654 567889999999999998877789999987

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.29  E-value=0.06  Score=44.72  Aligned_cols=54  Identities=19%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             CccccccccccccCCCcc-EEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCCC
Q 031191           97 SQESCAICKDEFSLHSEA-KQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~-~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~  150 (164)
                      +++-|+.|++++...++- .-.|||-..|.-|-..-- ..+..||-||+...+.+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv   68 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV   68 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence            346799999999887764 335688777766644432 356789999997765543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=0.038  Score=45.29  Aligned_cols=32  Identities=28%  Similarity=0.781  Sum_probs=24.9

Q ss_pred             CccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191          112 SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus       112 ~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ...+..||+|+||.+|...  ...+.||.|-..|
T Consensus       102 IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen  102 IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            3567789999999999755  4567999996544

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.59  E-value=0.051  Score=44.10  Aligned_cols=52  Identities=21%  Similarity=0.488  Sum_probs=39.5

Q ss_pred             ccccccccccccCCCc-cEEeCCC-----CccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSE-AKQLPCN-----HLYHSECILPCLS--HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~-~~~lpC~-----H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~  149 (164)
                      +..|-||.++...... ....||.     +..|+.|+..|+.  .+..|.+|........
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~  137 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG  137 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence            3789999998765432 4566763     6789999999995  7788999988765543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=0.061  Score=49.47  Aligned_cols=34  Identities=26%  Similarity=0.778  Sum_probs=27.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL  132 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl  132 (164)
                      ++.|.+|...+... .-.+.||||.||++||.+-.
T Consensus       817 ~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  817 QDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            48999999988764 45578899999999997644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=0.059  Score=49.38  Aligned_cols=42  Identities=29%  Similarity=0.801  Sum_probs=32.7

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v  145 (164)
                      ..|..|--.+.-  -.+...|+|.||.+|+.   .....||-|+.+.
T Consensus       841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCcccc--ceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            689999888776  13345699999999998   4567899998744

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=91.83  E-value=0.1  Score=42.77  Aligned_cols=41  Identities=29%  Similarity=0.728  Sum_probs=33.4

Q ss_pred             cccccccccccCCCccEEeCC--CCccchhhHHHHhcCCCCCcccCccCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPC--NHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC--~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      .+|+||.+.+..   + ++.|  ||+-|..|-.   +..+.||.||.++.
T Consensus        49 leCPvC~~~l~~---P-i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   49 LDCPVCFNPLSP---P-IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             ccCchhhccCcc---c-ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            799999999887   4 4447  7999999865   36788999999886

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.82  E-value=0.12  Score=43.77  Aligned_cols=37  Identities=24%  Similarity=0.518  Sum_probs=28.2

Q ss_pred             CccccccccccccCC-CccEEeCCCCccchhhHHHHhc
Q 031191           97 SQESCAICKDEFSLH-SEAKQLPCNHLYHSECILPCLS  133 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~-~~~~~lpC~H~Fh~~CI~~Wl~  133 (164)
                      ...+|.||..+.... +......|+|.||.+|+++.+.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie  182 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE  182 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence            347999999555444 4455556999999999998885

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.45  E-value=0.33  Score=41.01  Aligned_cols=45  Identities=20%  Similarity=0.417  Sum_probs=39.3

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCC---CCCcccCc
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ---SSCPLCRF  143 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~  143 (164)
                      ..|+|=.+.-.+.+-+..|.|||+..++-|.+-.+..   .-||+|=.
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            8999999999999999999999999999999977544   46999943

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.19  E-value=0.18  Score=39.21  Aligned_cols=40  Identities=30%  Similarity=0.633  Sum_probs=29.9

Q ss_pred             ccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccCC
Q 031191          100 SCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      .|-.|-+.-..   +..+||.| .+|..|=..    -..||+|+....
T Consensus       160 ~Cr~C~~~~~~---VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  160 SCRKCGEREAT---VLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             cceecCcCCce---EEeecccceEeccccccc----CccCCCCcChhh
Confidence            38888876555   89999976 788888543    456999987653

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.16  E-value=0.1  Score=49.81  Aligned_cols=44  Identities=27%  Similarity=0.489  Sum_probs=37.4

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCcc
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQ  144 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~  144 (164)
                      ..|.||++.+...  ..+.-|+|.++..|+..|+..+..||.|+..
T Consensus      1154 ~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             cchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence            6899999998841  3345599999999999999999999999753

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=88.73  E-value=0.35  Score=34.96  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHH-Hh--cCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILP-CL--SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~-Wl--~~~~~CP~CR~~v~~~~  149 (164)
                      -.+|.||.|.-.+..-..-=. ||-..|.-|-.. |-  .....||+|++.+....
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            489999999876632222222 898888887644 54  45689999999886553

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.56  E-value=0.49  Score=38.47  Aligned_cols=49  Identities=24%  Similarity=0.506  Sum_probs=34.8

Q ss_pred             ccccccccccCCCccE--EeCCCCccchhhHHHHh-cCCCCCcccCccCCCC
Q 031191          100 SCAICKDEFSLHSEAK--QLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMI  148 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~--~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~  148 (164)
                      .|++|....--...+.  +-+|+|.-|..|++.-+ .....||.|-..+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            5888885544332222  22699999999999998 5667899997765443

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=87.51  E-value=0.14  Score=46.13  Aligned_cols=49  Identities=20%  Similarity=0.562  Sum_probs=39.6

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~CR~~v~~~~~  150 (164)
                      .+|+||+..+..   ...+.|.|.|+..|+..-|.   ....||+|+..+.....
T Consensus        22 lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~   73 (684)
T KOG4362|consen   22 LECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL   73 (684)
T ss_pred             ccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence            699999999999   67788999999999977553   34689999977755543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.30  E-value=0.36  Score=44.09  Aligned_cols=27  Identities=22%  Similarity=0.561  Sum_probs=23.1

Q ss_pred             cEEeCCCCccchhhHHHHhcCCCCCcc
Q 031191          114 AKQLPCNHLYHSECILPCLSHQSSCPL  140 (164)
Q Consensus       114 ~~~lpC~H~Fh~~CI~~Wl~~~~~CP~  140 (164)
                      .....|+|.-|..|.+.|++....||.
T Consensus      1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhhccccccccHHHHHHHHhcCCcCCC
Confidence            345669999999999999999989984

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.29  E-value=0.24  Score=40.36  Aligned_cols=32  Identities=22%  Similarity=0.629  Sum_probs=24.6

Q ss_pred             CCCccchhhHHHHhc-------------CCCCCcccCccCCCCCC
Q 031191          119 CNHLYHSECILPCLS-------------HQSSCPLCRFQLPMINP  150 (164)
Q Consensus       119 C~H~Fh~~CI~~Wl~-------------~~~~CP~CR~~v~~~~~  150 (164)
                      |...+|.+|+.+|+.             ++.+||.||+.+...+.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv  369 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV  369 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence            567889999999882             34589999998865543

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.93  E-value=0.3  Score=38.81  Aligned_cols=45  Identities=24%  Similarity=0.588  Sum_probs=33.8

Q ss_pred             cccccccccccCCC--ccEEeC-CCCccchhhHHHHh-cCCCCCc--ccCc
Q 031191           99 ESCAICKDEFSLHS--EAKQLP-CNHLYHSECILPCL-SHQSSCP--LCRF  143 (164)
Q Consensus        99 ~~C~ICl~~~~~~~--~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP--~CR~  143 (164)
                      ..|+||..+-.-..  +.-+-| |-|..|.+|+++-| .....||  -|-+
T Consensus        11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220          11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            58999997654332  344457 99999999999999 5567899  6743

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.70  E-value=0.36  Score=38.67  Aligned_cols=48  Identities=25%  Similarity=0.548  Sum_probs=35.3

Q ss_pred             ccccccccccccCCCcc-EEeCC-----CCccchhhHHHHhcCC--------CCCcccCccC
Q 031191           98 QESCAICKDEFSLHSEA-KQLPC-----NHLYHSECILPCLSHQ--------SSCPLCRFQL  145 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~-~~lpC-----~H~Fh~~CI~~Wl~~~--------~~CP~CR~~v  145 (164)
                      +.-|=||+..=+++-.. -+-||     .|=.|..|+..|+..+        -+||-|+++.
T Consensus        20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            46899999876664433 34566     3778999999999432        2699999875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=83.02  E-value=1.1  Score=41.00  Aligned_cols=39  Identities=18%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             cccccccccccCCCccEEe-C-CCCccchhhHHHHhcCCCCCcc
Q 031191           99 ESCAICKDEFSLHSEAKQL-P-CNHLYHSECILPCLSHQSSCPL  140 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l-p-C~H~Fh~~CI~~Wl~~~~~CP~  140 (164)
                      ..|.+|-..+..   +... + |+|.=|.+|+++|+.....||.
T Consensus       780 ~~CtVC~~vi~G---~~~~c~~C~H~gH~sh~~sw~~~~s~ca~  820 (839)
T KOG0269|consen  780 AKCTVCDLVIRG---VDVWCQVCGHGGHDSHLKSWFFKASPCAK  820 (839)
T ss_pred             cCceeecceeee---eEeecccccccccHHHHHHHHhcCCCCcc
Confidence            578888776655   3333 3 9999999999999988887766

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.52  E-value=0.78  Score=40.62  Aligned_cols=53  Identities=32%  Similarity=0.592  Sum_probs=43.0

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCcccccc
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWAC  158 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~~~~~~  158 (164)
                      ..|.||+++.    ..+..+|.   |.-|...|+..+..||+|+..+..++..+-.++..
T Consensus       480 ~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~  532 (543)
T KOG0802|consen  480 DVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSKNSSES  532 (543)
T ss_pred             CcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCcccccc
Confidence            7899999988    36667788   99999999999999999999887766665555543

>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]

Probab=80.73  E-value=0.64  Score=37.44  Aligned_cols=46  Identities=26%  Similarity=0.613  Sum_probs=33.8

Q ss_pred             cccccccccccCCCccEEe---C-CCCccchhhHHHHhc---------CCCCCcccCcc
Q 031191           99 ESCAICKDEFSLHSEAKQL---P-CNHLYHSECILPCLS---------HQSSCPLCRFQ  144 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l---p-C~H~Fh~~CI~~Wl~---------~~~~CP~CR~~  144 (164)
                      .+|.+|.+++...+..+..   + |.-.+|..|+..-+.         ....||.|++.
T Consensus       183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~  241 (276)
T KOG3005|consen  183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF  241 (276)
T ss_pred             hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence            6899999999554444332   2 899999999998442         23579999874

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=80.73  E-value=0.83  Score=42.07  Aligned_cols=51  Identities=14%  Similarity=0.333  Sum_probs=37.5

Q ss_pred             cccccccccccCC-CccEEeC---CCCccchhhHHHHhc------CCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLH-SEAKQLP---CNHLYHSECILPCLS------HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~-~~~~~lp---C~H~Fh~~CI~~Wl~------~~~~CP~CR~~v~~~~  149 (164)
                      ..|.||.-++... +....+|   |+|.||..||..|+.      .+-.|++|...|..+.
T Consensus        97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs  157 (1134)
T KOG0825|consen   97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS  157 (1134)
T ss_pred             cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence            6788888777763 2333445   999999999999993      2456899988776554

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=80.10  E-value=1.4  Score=40.83  Aligned_cols=49  Identities=24%  Similarity=0.677  Sum_probs=36.4

Q ss_pred             cccccccccccCCCccEEeCCC-----CccchhhHHHHhc--CCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCLS--HQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~  148 (164)
                      ..|-||..+-..++.. --||+     ..-|.+|+.+|+.  ....|-+|+.++.=+
T Consensus        13 ~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk   68 (1175)
T COG5183          13 RSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK   68 (1175)
T ss_pred             hhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence            7999999776554443 44664     4689999999994  456799998876443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-09
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-04
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		4e-04
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-04

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149
           C +CK++++L    +QLPCNHL+H  CI+P L    SCP+CR  L   N
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 101 CAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145
           CA+C  E     EA+ LP C H +H+EC+   L   S+CPLCR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 84  GMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLC 141
           G   +S ++ E    E CA+C ++F    E    PC H +H +C++  L  +  CPLC
Sbjct: 1   GSSGSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 98  QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
           Q  C +C  +F      + LPCNH +H++C+   L    +CP+CR
Sbjct: 23  QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	5e-20
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	6e-16
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-15
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	4e-14
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-13
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-10
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-10
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	8e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	8e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	4e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	7e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	9e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	5e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	9e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 79.3 bits (196), Expect = 2e-20
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 87  MNSVEISESL----SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
           +  + ++E       +  C IC  E+     A +LPC+H +H  C+   L    +CP+CR
Sbjct: 25  LPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

Query: 143 FQLP 146
              P
Sbjct: 85  CMFP 88

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 77.9 bits (192), Expect = 5e-20
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSN 152
           C +CK++++L    +QLPCNHL+H  CI+P L    SCP+CR  L   N + 
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 67.5 bits (165), Expect = 6e-16
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
           S ++ E    E CA+C ++F    E    PC H +H +C++  L  +  CPLC   + 
Sbjct: 6   SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 91  EISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
           E +E  ++E C IC        + ++LPC HL+H  C+   L     CP+CR  +    P
Sbjct: 7   EGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

Query: 151 S 151
           S
Sbjct: 67  S 67

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 62.8 bits (153), Expect = 4e-14
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148
           S  + +   +E C IC D          LPC H +  +CI        +CP+CR Q+   
Sbjct: 6   SGRVKQLTDEEECCICMDGR----ADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61

Query: 149 NPSN 152
           N S+
Sbjct: 62  NESS 65

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 60.8 bits (148), Expect = 2e-13
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 91  EISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
             +    Q  C +C  +F      + LPCNH +H++C+   L    +CP+CR   
Sbjct: 16  PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 57.7 bits (140), Expect = 3e-12
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 97  SQESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRF 143
               C IC ++       A  LPC HL H  C    L     CPLC  
Sbjct: 4   GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 53.9 bits (130), Expect = 1e-10
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 97  SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
             E C IC ++ S  + +  LPC H +   CI   +    +CPLC+
Sbjct: 4   VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 101 CAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145
           CA+C  E     EA+ LP C H +H+EC+   L   S+CPLCR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 51.5 bits (123), Expect = 8e-10
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 100 SCAICKDEFS----LHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           SC IC D +S             C H++ S+C+   L + ++CP CR ++
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
           S   + SL+   CAIC            LPC H++   C+         C LCR ++P
Sbjct: 6   SGNTAPSLTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 100 SCAICKDEFS----LHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           SC IC D +S             C H++ S+C+   L + ++CP CR ++
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 48.7 bits (116), Expect = 8e-09
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 93  SESLSQESCAICKDEFSLHSEAKQ----LPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147
                  SC IC D +S   +  +      C H++ S+C+   L + ++CP CR ++  
Sbjct: 5   LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 99  ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCR 142
           ++C  C+ E            CNH +H+ C+   +   + CPLC+
Sbjct: 27  DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 3/55 (5%)

Query: 88  NSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
           +S    E      C IC+  F          C H +   C L        C +C 
Sbjct: 5   SSGGSEEEEIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICD 56

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 46.3 bits (110), Expect = 7e-08
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148
           S  +SE      C+ICK             C H +   CI+    + + CP C   +   
Sbjct: 6   SGNLSELTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

Query: 149 NPSN 152
            P +
Sbjct: 64  QPLS 67

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 44.4 bits (104), Expect = 9e-07
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 15/59 (25%)

Query: 99  ESCAICKDEFSLHSEAKQ---------------LPCNHLYHSECILPCLSHQSSCPLCR 142
           ++CAIC++         Q                 CNH +H  CI   L  +  CPL  
Sbjct: 38  DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 86  RMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
           R   ++I+E      C +C   F        + C H +   CI+  L     CP+C  Q+
Sbjct: 3   RTTRIKITELNPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

Query: 146 PMINP 150
               P
Sbjct: 61  HKTRP 65

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 20/73 (27%)

Query: 90  VEISESLSQESCAICKDEFSLHSEA---------------KQLPCNHLYHSECILPCLSH 134
            E  +   +E C IC ++ ++ S                 +   C+H +H  C+L    +
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 135 QS-----SCPLCR 142
            +      CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 78  DNSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSS 137
           +   +    + S       ++  C IC + F    EA  L C H + S CI   +  +  
Sbjct: 44  EKMQAQKEEVLSHMNDVLENELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIE 100

Query: 138 CPLCRFQLPMINPSNVVSWACSS 160
           CP+CR  +     S V+    + 
Sbjct: 101 CPICRKDIKSKTYSLVLDNCINK 123

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCR 142
            +      + + C IC +      + K  PC HL  + C+     S    CP CR
Sbjct: 323 ELYCEMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 15/59 (25%)

Query: 99  ESCAICKDEFSLHSEAKQ---------------LPCNHLYHSECILPCLSHQSSCPLCR 142
           ++CAIC++         Q                 CNH +H  CI   L  +  CPL  
Sbjct: 49  DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 4/50 (8%)

Query: 99  ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL--SHQSSCPLCRFQLP 146
           + C IC     L        C    H  C+      + +  CP C    P
Sbjct: 16  KICNICHSL--LIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 86  RMNSVEISESLSQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS-HQSSCPLCRF 143
            M+   +        C IC ++     +A+  P C+ L    CI   L+  ++ CP CR 
Sbjct: 10  HMDEQSVESIAEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRA 66

Query: 144 QLPM 147
            L +
Sbjct: 67  PLQL 70

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 100 SCAICKDEFSLHSEAKQ----LPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVS 155
           SC IC D +S   +  +      C H++ S+C+   L + ++CP CR ++       +  
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68

Query: 156 WAC 158
            + 
Sbjct: 69  GSG 71

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCR 142
            C IC + F+    A  +P C+H Y S CI   LS+++ CP C 
Sbjct: 24  RCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCC 64

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 91  EISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLPMIN 149
           +   SLS+  C IC +      E   LPCNH     C    +   S  CP CR ++    
Sbjct: 8   DAIPSLSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWT 64

Query: 150 PSN 152
             +
Sbjct: 65  RYH 67

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 87  MNSVEISESLSQE-SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ---SSCPLCR 142
           M S +    L +E  C IC D      +   + C H +  +CI            CPLC+
Sbjct: 8   MASGQFVNKLQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCK 64

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 89  SVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLP 146
            + +S+      C  C++            C H    +C+      Q  SCP CR+ L 
Sbjct: 43  QLFLSKVEETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 89  SVEISESLSQE-SCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQL 145
            VE    L  +  C IC        EA Q PC H +   CI+  +      CP+    L
Sbjct: 8   DVEFDPPLESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 35.4 bits (82), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147
            C  C+ E       K LPC H   S C+    +    CP+C+   P+
Sbjct: 8   RCQQCQAEAK---CPKLLPCLHTLCSGCLE---ASGMQCPICQAPWPL 49

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCR 142
           C  C          KQ  C H +   C+   L S    C  C+
Sbjct: 18  CEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQ 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.76
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.71
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.66
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.66
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.65
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.63
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.58
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.58
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.57
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.54
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.54
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.53
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.53
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.52
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.52
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.5
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.49
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.48
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.47
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.46
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.45
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.45
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.45
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.43
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.43
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.39
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.39
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.38
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.38
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.37
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.36
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.36
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.36
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.35
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.35
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.33
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.33
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.31
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.3
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.28
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.27
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.26
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.25
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.25
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.24
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.24
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.19
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.18
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.17
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.17
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.16
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.16
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.13
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.12
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.11
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.99
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.94
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.94
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.94
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.94
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.88
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.87
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.84
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.81
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.72
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.71
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.63
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.62
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.35
3nw0_A	238	Non-structural maintenance of chromosomes element	98.2
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	96.44
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.05
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.46
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	89.91
1we9_A	64	PHD finger family protein; structural genomics, PH	89.71
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	88.63
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	87.7
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	87.25
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	87.06
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	85.23
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	84.71
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	83.97
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	81.82
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	81.81
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	81.17
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	81.15
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	81.04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=116.72  Aligned_cols=71  Identities=25%  Similarity=0.603  Sum_probs=61.9

Q ss_pred             CCCChhHHhhhCCceeeccCC----CccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           76 GLDNSSSVGMRMNSVEISESL----SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        76 ~~~~~~~~~~~lp~~~~~~~~----~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      .+... +.+..||.+.+.+..    ....|+||++.|..++.++.+||+|.||..||..|++.+.+||+||+.+..
T Consensus        15 ~~~s~-~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           15 PPASK-ESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCCH-HHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCH-HHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            34444 899999999887654    237899999999999999999999999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=2.9e-18  Score=111.31  Aligned_cols=65  Identities=26%  Similarity=0.594  Sum_probs=55.0

Q ss_pred             hhhCCceeeccCC---CccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           84 GMRMNSVEISESL---SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        84 ~~~lp~~~~~~~~---~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      +..+|.+.+....   ....|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||+++.+.
T Consensus         6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            4556676665432   3378999999999999899999999999999999999899999999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=5.9e-17  Score=104.65  Aligned_cols=54  Identities=30%  Similarity=0.792  Sum_probs=48.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS  151 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~  151 (164)
                      ...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+......
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence            479999999999999899999999999999999998889999999998765443

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.66  E-value=5.9e-17  Score=98.79  Aligned_cols=49  Identities=41%  Similarity=0.874  Sum_probs=45.9

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      +.+|+||++.+..++.++.++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            468999999999999999998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=101.49  Aligned_cols=52  Identities=31%  Similarity=0.783  Sum_probs=47.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+....
T Consensus        14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            3789999999998888999999999999999999998999999999986653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2e-16  Score=103.10  Aligned_cols=55  Identities=42%  Similarity=1.006  Sum_probs=49.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~  152 (164)
                      ...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+.......
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence            4799999999999888889999999999999999999999999999997765543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.7e-16  Score=102.13  Aligned_cols=50  Identities=26%  Similarity=0.648  Sum_probs=41.4

Q ss_pred             cccccccccccc-----------CCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFS-----------LHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~-----------~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ++.|+||++.|.           .++.++.++ |+|.||..||.+||+.+.+||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            356777777775           455677776 99999999999999999999999998754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.58  E-value=2.4e-15  Score=104.77  Aligned_cols=52  Identities=25%  Similarity=0.635  Sum_probs=43.0

Q ss_pred             ccccccccccccCCC---------------ccEEeCCCCccchhhHHHHh-----cCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHS---------------EAKQLPCNHLYHSECILPCL-----SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl-----~~~~~CP~CR~~v~~~~  149 (164)
                      +..|+||++.|..+.               .++.++|+|.||..||..|+     +.+.+||+||+.+....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            479999999997643               34477899999999999999     55779999999886553

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.57  E-value=1.2e-15  Score=92.78  Aligned_cols=49  Identities=33%  Similarity=0.712  Sum_probs=43.0

Q ss_pred             ccccccccccccCCC-ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ...|+||++.+.+++ .++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            478999999997654 4677889999999999999988899999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.3e-15  Score=94.70  Aligned_cols=53  Identities=25%  Similarity=0.539  Sum_probs=46.5

Q ss_pred             ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCc
Q 031191           98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNV  153 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~  153 (164)
                      ...|+||++.+.+   ++.+ +|+|.||..||..|++.+..||+||+.+...+....
T Consensus        15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred             CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence            4799999999988   7776 899999999999999889999999999977665543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.54  E-value=2.8e-15  Score=95.67  Aligned_cols=53  Identities=28%  Similarity=0.632  Sum_probs=45.7

Q ss_pred             ccccccccccccC----CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           98 QESCAICKDEFSL----HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      ...|+||++.+.+    ++.++.++|||.||..||.+|++.+.+||+||+.+...+.
T Consensus        10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A           10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            3789999999976    2445788999999999999999989999999999876544

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.8e-15  Score=97.05  Aligned_cols=50  Identities=28%  Similarity=0.571  Sum_probs=44.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      ...|+||++.+.+   .+.++|+|.||..||..|++.+..||+||..+.....
T Consensus        15 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           15 VPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL   64 (71)
T ss_dssp             CCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred             CCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence            3789999999988   7889999999999999999999999999999865543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=4.2e-15  Score=94.83  Aligned_cols=50  Identities=36%  Similarity=0.766  Sum_probs=44.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS  151 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~  151 (164)
                      ...|+||++.+.+    +.++|+|.||..||.+|++.+.+||+||+.+...+..
T Consensus        15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   64 (70)
T 2ecn_A           15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES   64 (70)
T ss_dssp             CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred             CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence            4799999999877    7889999999999999999999999999998766543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.52  E-value=8.2e-15  Score=101.41  Aligned_cols=50  Identities=28%  Similarity=0.551  Sum_probs=42.8

Q ss_pred             CccccccccccccCCC---------------ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           97 SQESCAICKDEFSLHS---------------EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ..+.|+||++.|...-               .++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            3489999999998641               2566889999999999999999999999999863

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.9e-15  Score=94.37  Aligned_cols=50  Identities=30%  Similarity=0.697  Sum_probs=43.5

Q ss_pred             ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ...|+||++.|.+.    ..++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            47899999999863    334788999999999999999889999999998754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.50  E-value=6.6e-15  Score=91.94  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=44.9

Q ss_pred             ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ..+|+||++.+.+.    +.++.++|||.||..||.+|++.+.+||+||+.+...+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            36899999999763    44578899999999999999988999999999987654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.4e-14  Score=95.41  Aligned_cols=55  Identities=27%  Similarity=0.607  Sum_probs=45.4

Q ss_pred             ccccccccccccCCCccEEeCCC-----CccchhhHHHHhcCC--CCCcccCccCCCCCCCCc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCLSHQ--SSCPLCRFQLPMINPSNV  153 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~~~~~  153 (164)
                      +..|.||++++.+++.+ ++||+     |.||..||++||..+  .+||+||..+.......+
T Consensus        15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence            37899999999877765 68996     999999999999654  599999999876654443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.6e-14  Score=94.73  Aligned_cols=52  Identities=25%  Similarity=0.579  Sum_probs=45.4

Q ss_pred             ccccccccccccCCCc-cEEeCCCCccchhhHHHHhcCC---CCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQ---SSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|.+++. ++.++|||.||..||..|++.+   ..||+||+.+...+
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            4789999999998775 7788999999999999999765   79999999886654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8e-14  Score=89.39  Aligned_cols=49  Identities=24%  Similarity=0.528  Sum_probs=43.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.+.+   ++.++|+|.||..||..|++   .+..||+||+.+...+
T Consensus        20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            4799999999997   88899999999999999996   4568999999886543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.46  E-value=2.5e-14  Score=90.63  Aligned_cols=48  Identities=31%  Similarity=0.741  Sum_probs=42.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      +..|+||++.+.+  .++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus         5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            4689999999875  24778999999999999999988999999998854

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.45  E-value=3.6e-14  Score=102.24  Aligned_cols=47  Identities=32%  Similarity=0.689  Sum_probs=43.4

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..|+||++.|.+   ++.+||||.||..||..|++.+.+||+||+++...
T Consensus        54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             CCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            579999999988   88999999999999999999999999999988644

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.45  E-value=5.3e-14  Score=90.89  Aligned_cols=48  Identities=33%  Similarity=0.653  Sum_probs=41.9

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC--CCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ--SSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++.++ |+|.||..||..|++.+  ..||+||+.+...
T Consensus        15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            4799999999998   88899 99999999999999654  6999999975443

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=6e-14  Score=88.51  Aligned_cols=49  Identities=22%  Similarity=0.500  Sum_probs=42.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.+.+   ++.++|||.||..||.+|+ +.+..||+||+.+...+
T Consensus        15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           15 KYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             CEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             CCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            4789999999987   6668999999999999999 56779999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.43  E-value=1.1e-14  Score=102.36  Aligned_cols=50  Identities=28%  Similarity=0.552  Sum_probs=0.8

Q ss_pred             CccccccccccccCC-------------C--ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           97 SQESCAICKDEFSLH-------------S--EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~-------------~--~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ..+.|+||++.|.+.             +  .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            348999999999752             2  2334579999999999999999999999999864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=7.7e-14  Score=91.47  Aligned_cols=46  Identities=22%  Similarity=0.553  Sum_probs=42.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ...|+||++.+.+   ++.++|+|.||..||..|++....||+||+.+.
T Consensus        15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3689999999988   788999999999999999988999999999985

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.39  E-value=3e-13  Score=87.87  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|.+   ++.++|||.||..||.+|++. +.+||+||..+...+
T Consensus         8 ~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~   57 (78)
T 1t1h_A            8 YFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             cCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence            3799999999988   888999999999999999976 789999999986553

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.39  E-value=8.9e-14  Score=94.94  Aligned_cols=49  Identities=31%  Similarity=0.603  Sum_probs=43.5

Q ss_pred             cccccccccccCCCccEE-eCCCCccchhhHHHHhcCC-CCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~~~  150 (164)
                      ..|+||++.|.+   ++. ++|||.||..||..|++.+ ..||+||..+...+.
T Consensus        23 ~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l   73 (100)
T 3lrq_A           23 FRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL   73 (100)
T ss_dssp             TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence            789999999987   888 8899999999999999766 799999999865543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.6e-13  Score=87.88  Aligned_cols=52  Identities=21%  Similarity=0.521  Sum_probs=43.1

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCC--CCCcccCccCCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ--SSCPLCRFQLPMINPSN  152 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~~~~  152 (164)
                      ..|+||.+.+..++.-.  .|+|.||..||.+||+.+  .+||+||+++.....+.
T Consensus        16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~   69 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS   69 (74)
T ss_dssp             CBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred             CcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence            79999999998754332  699999999999999877  89999999987554443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.38  E-value=4e-13  Score=88.12  Aligned_cols=48  Identities=27%  Similarity=0.695  Sum_probs=42.9

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC------CCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH------QSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.+.+   ++.++|+|.||..||..|++.      ...||+||..+...
T Consensus        19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           19 EVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             CCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4799999999988   778999999999999999966      77999999998654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.5e-13  Score=87.87  Aligned_cols=49  Identities=29%  Similarity=0.701  Sum_probs=43.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC------CCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH------QSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.+.+   ++.++|+|.||..||..|++.      ...||+||..+...+
T Consensus        19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            4799999999987   777899999999999999976      789999999987643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=7.6e-13  Score=82.57  Aligned_cols=41  Identities=29%  Similarity=0.654  Sum_probs=37.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCccc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLC  141 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~C  141 (164)
                      ...|+||++.+.+   ++.++|||.||..||.+|++   .+..||+|
T Consensus        20 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4799999999998   88899999999999999996   56689998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.36  E-value=1.3e-13  Score=89.65  Aligned_cols=48  Identities=27%  Similarity=0.632  Sum_probs=42.5

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-------CCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-------QSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-------~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++.++|||.||..||..|++.       ...||+||..+...
T Consensus        12 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           12 EVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             CCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            4789999999988   677899999999999999976       67899999998654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.36  E-value=3.5e-13  Score=92.95  Aligned_cols=49  Identities=27%  Similarity=0.644  Sum_probs=44.1

Q ss_pred             CccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           97 SQESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ....|+||++.+.+   ++.+ +|||.||..||..|++.+..||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            34799999999988   7787 8999999999999999899999999988654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.35  E-value=3.6e-13  Score=91.46  Aligned_cols=47  Identities=34%  Similarity=0.699  Sum_probs=42.9

Q ss_pred             cccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..|+||++.|.+   ++.+ +|||.||..||..|+..+..||+||..+...
T Consensus        23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            789999999988   7777 7999999999999999899999999988653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.35  E-value=4.1e-13  Score=94.95  Aligned_cols=52  Identities=29%  Similarity=0.659  Sum_probs=45.3

Q ss_pred             ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|.+.    ..++.++|||.||..||.+|++.+.+||+||+.+....
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            36899999999763    44588999999999999999999999999999986654

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.33  E-value=8.7e-13  Score=93.12  Aligned_cols=46  Identities=26%  Similarity=0.566  Sum_probs=41.8

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~  147 (164)
                      ..|+||++.|.+   ++.++|||.||..||..|+..+ ..||+||..+..
T Consensus        53 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           53 FQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            689999999998   8889999999999999999754 499999999866

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.33  E-value=1.1e-12  Score=82.39  Aligned_cols=52  Identities=23%  Similarity=0.430  Sum_probs=41.9

Q ss_pred             cccccccc-cccCCCcc-EEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCC
Q 031191           99 ESCAICKD-EFSLHSEA-KQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~-~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~  150 (164)
                      ..|+||++ .+.+.... +.++|||.||..||.+|+. ....||+||+.+...+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            58999999 77775443 4578999999999999974 45789999999876543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=80.36  Aligned_cols=41  Identities=24%  Similarity=0.727  Sum_probs=36.2

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHh---cCCCCCccc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL---SHQSSCPLC  141 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl---~~~~~CP~C  141 (164)
                      ...|+||++.+.+   ++.++|+|.||..||.+|+   +.+..||+|
T Consensus        15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           15 EASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             CCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4799999999988   6778999999999999995   456789998

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.30  E-value=1.3e-12  Score=90.23  Aligned_cols=49  Identities=24%  Similarity=0.659  Sum_probs=42.5

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCC---CCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS---SCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~---~CP~CR~~v~~~~~  150 (164)
                      ..|+||++.+.+   ++.++|||.||..||..|+..+.   .||+||..+.....
T Consensus        22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            689999999987   66789999999999999997654   89999999876543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.28  E-value=2.4e-12  Score=86.10  Aligned_cols=46  Identities=35%  Similarity=0.721  Sum_probs=40.9

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC--CCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH--QSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~--~~~CP~CR~~v~  146 (164)
                      ...|+||++.|.+   ++.++ |||.||..||..|+..  +..||+||..+.
T Consensus        13 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           13 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3799999999998   88999 9999999999999953  369999999873

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.27  E-value=1.4e-12  Score=92.18  Aligned_cols=53  Identities=28%  Similarity=0.649  Sum_probs=45.4

Q ss_pred             CccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           97 SQESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ....|+||++.|...    ...+.++|||.||..||.+|++.+.+||+||..+...+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            347899999999862    34478889999999999999999999999999987654

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.26  E-value=3.9e-12  Score=92.95  Aligned_cols=47  Identities=26%  Similarity=0.525  Sum_probs=42.7

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCC-CCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~~~  148 (164)
                      ..|+||++.|.+   ++.++|+|.||..||..|+.... .||+||..+...
T Consensus        79 ~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           79 FMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            789999999988   88899999999999999997654 899999998765

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.25  E-value=3.2e-12  Score=94.44  Aligned_cols=46  Identities=30%  Similarity=0.700  Sum_probs=41.5

Q ss_pred             cccccccccccCCCccEEe-CCCCccchhhHHHHhcC-CCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSH-QSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~  147 (164)
                      ..|+||++.|.+   ++.+ +|||.||..||..|++. +..||+||..+..
T Consensus        55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            699999999998   7777 89999999999999976 7899999998854

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.25  E-value=2.3e-12  Score=90.27  Aligned_cols=49  Identities=27%  Similarity=0.548  Sum_probs=43.1

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCC-CCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~~~~  149 (164)
                      ...|+||++.+.+   ++.++|||.||..||..|++.+. +||+||..+....
T Consensus        18 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (118)
T 3hct_A           18 KYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (118)
T ss_dssp             GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence            4799999999988   78899999999999999996654 9999999986643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.24  E-value=1.6e-12  Score=90.56  Aligned_cols=46  Identities=28%  Similarity=0.710  Sum_probs=41.8

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~  147 (164)
                      ..|+||++.+.+   ++.++|||.||..||..|+.. +..||+||..+..
T Consensus        16 ~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           16 CQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            789999999988   889999999999999999965 6799999998853

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.24  E-value=3e-12  Score=89.30  Aligned_cols=49  Identities=35%  Similarity=0.735  Sum_probs=43.7

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~~  150 (164)
                      ..|+||++.+.+   ++.++|||.||..||.+|++. +.+||+||..+...+.
T Consensus        24 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           24 ISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            689999999988   888999999999999999965 7899999999876543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.19  E-value=8e-12  Score=78.56  Aligned_cols=46  Identities=24%  Similarity=0.495  Sum_probs=41.2

Q ss_pred             ccccccccccccCCCccEEe--CCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQL--PCNHL-YHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      +..|.||++.+.+   .+.+  ||||. |+..|+..|.+.+..||+||+.+.
T Consensus         8 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            8 IEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             cCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3689999999887   6666  99999 899999999998899999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.18  E-value=4e-12  Score=77.78  Aligned_cols=45  Identities=31%  Similarity=0.671  Sum_probs=39.5

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++.++|+|.||..||..|   ...||+||+.+...
T Consensus         6 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            6 FLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             CCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4689999999998   788999999999999885   67899999988654

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.17  E-value=1.4e-11  Score=81.71  Aligned_cols=48  Identities=17%  Similarity=0.163  Sum_probs=44.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ...|+||++-|.+   +++++|||.|++.||..|+..+.+||+||..+...
T Consensus        14 ~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           14 EFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             TTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             heECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4799999999999   99999999999999999998889999999988654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.17  E-value=1.8e-11  Score=83.68  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=45.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|.+   ++.++|||.|++.||..|+..+.+||+||.++....
T Consensus        29 ~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   77 (100)
T 2kre_A           29 EFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM   77 (100)
T ss_dssp             TTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred             hhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence            4799999999999   999999999999999999998899999999987643

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.16  E-value=2.4e-11  Score=79.38  Aligned_cols=52  Identities=17%  Similarity=0.423  Sum_probs=41.3

Q ss_pred             ccccccccccccCCCccEEe--CCCCccchhhHHHHh-cCCCCCcccCccCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL-SHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~  150 (164)
                      +.+|+||++.+...+. ..+  +|||.||..|+..|+ .....||+||+.+.....
T Consensus        11 ~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           11 PVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             CCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            4799999998865333 344  499999999999987 456789999999876654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.16  E-value=3.5e-11  Score=81.90  Aligned_cols=49  Identities=18%  Similarity=0.088  Sum_probs=45.2

Q ss_pred             ccccccccccccCCCccEEeCCC-CccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCN-HLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ...|+||++.|.+   +++++|| |.|++.||..|+..+.+||+||..+....
T Consensus        22 ~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~   71 (98)
T 1wgm_A           22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             hcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence            4799999999999   9999999 99999999999988899999999987653

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.13  E-value=1.9e-11  Score=101.45  Aligned_cols=49  Identities=29%  Similarity=0.715  Sum_probs=44.2

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~  150 (164)
                      ..|+||++.+.+   ++.+||||.||..||..|+. .+.+||+||..+.....
T Consensus       333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred             CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence            699999999987   88999999999999999997 78999999998876543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.12  E-value=2.3e-11  Score=76.17  Aligned_cols=46  Identities=20%  Similarity=0.503  Sum_probs=40.9

Q ss_pred             ccccccccccccCCCccEEe--CCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQL--PCNHL-YHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      ...|.||++...+   ...+  ||||. |+..|+.+|.+.+..||+||+.+.
T Consensus         7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3689999998877   6666  99998 999999999988899999999884

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.11  E-value=2.1e-11  Score=88.17  Aligned_cols=47  Identities=26%  Similarity=0.528  Sum_probs=41.5

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~  147 (164)
                      ...|+||++.+.+   ++.++|||.||..||.+|++.. ..||+||.++..
T Consensus        31 ~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           31 KYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4799999999998   7889999999999999999755 499999998643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.11  E-value=2e-11  Score=85.35  Aligned_cols=46  Identities=24%  Similarity=0.677  Sum_probs=41.1

Q ss_pred             ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++.+ +|||.||..||..|+.  ..||+||..+...
T Consensus        22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            3789999999988   8888 8999999999999987  8899999998543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.09  E-value=3.7e-11  Score=77.50  Aligned_cols=42  Identities=29%  Similarity=0.709  Sum_probs=38.8

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ..|+||++.+.+   ++.+||||. ||..|+..|    ..||+||+.+..
T Consensus        25 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           25 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             TBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            689999999988   889999999 999999999    889999998854

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.99  E-value=1.7e-10  Score=85.39  Aligned_cols=48  Identities=27%  Similarity=0.550  Sum_probs=42.5

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~  148 (164)
                      ...|+||++.+.+   ++.++|||.||..||.+|++.+ ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           18 KYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            4799999999998   7889999999999999999654 5999999988664

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.6e-10  Score=76.79  Aligned_cols=47  Identities=23%  Similarity=0.585  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC------CCCcc--cCcc-CCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ------SSCPL--CRFQ-LPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~------~~CP~--CR~~-v~~  147 (164)
                      ...|+||++.|.+   +++++ |||.|++.||..|+..+      .+||+  |+.. +..
T Consensus         7 ~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~   63 (94)
T 2yu4_A            7 GFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK   63 (94)
T ss_dssp             CCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred             EeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence            4789999999999   99997 99999999999999643      58999  9866 543

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=3.6e-10  Score=72.91  Aligned_cols=43  Identities=28%  Similarity=0.676  Sum_probs=37.7

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..|+||++.+.+   ++.+||+|. ||..|+...    ..||+||..+...
T Consensus        26 ~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           26 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   69 (75)
T ss_dssp             HSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred             CCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence            689999999888   888999999 999999753    7899999988653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.94  E-value=2.8e-10  Score=89.55  Aligned_cols=48  Identities=17%  Similarity=0.050  Sum_probs=42.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++++||||.||+.||..|+.. +.+||+||.++...
T Consensus       208 ~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          208 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             TTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             ccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            3799999999999   999999999999999999965 45699999988654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.94  E-value=6.3e-10  Score=69.02  Aligned_cols=47  Identities=23%  Similarity=0.584  Sum_probs=37.1

Q ss_pred             ccccccccccccCCCccEEeCCC--C---ccchhhHHHHhc--CCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCN--H---LYHSECILPCLS--HQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl~--~~~~CP~CR~~v~~  147 (164)
                      ...|.||+++.  ++.. .+||.  +   .||..|+.+|+.  .+.+||+||..+..
T Consensus         6 ~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            6 VPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            47899999973  3333 68964  4   999999999994  47899999998753

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.88  E-value=4.5e-10  Score=73.40  Aligned_cols=43  Identities=28%  Similarity=0.660  Sum_probs=38.6

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ..|.||++.+.+   ++.+||||. |+..|+..|    ..||+||..+...
T Consensus        19 ~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           19 MLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             TBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            689999999888   899999999 999999987    3899999988654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.87  E-value=3.1e-10  Score=92.43  Aligned_cols=50  Identities=22%  Similarity=0.472  Sum_probs=39.2

Q ss_pred             CccccccccccccCCCccE-----EeCCCCccchhhHHHHhcCC-----------CCCcccCccCC
Q 031191           97 SQESCAICKDEFSLHSEAK-----QLPCNHLYHSECILPCLSHQ-----------SSCPLCRFQLP  146 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~-----~lpC~H~Fh~~CI~~Wl~~~-----------~~CP~CR~~v~  146 (164)
                      ...+|+||++.+.++.++-     ..+|+|.||..||.+||+..           .+||+||+++.
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3479999999999844332     23599999999999999642           47999999774

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.9e-09  Score=68.45  Aligned_cols=44  Identities=25%  Similarity=0.624  Sum_probs=38.6

Q ss_pred             ccccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~  148 (164)
                      ...|.||++...+   ++.+||+|. ||..|+..    ...||+||..+...
T Consensus        15 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           15 SKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             SSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3689999999888   999999999 99999985    47899999988654

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.81  E-value=1.7e-09  Score=81.07  Aligned_cols=48  Identities=17%  Similarity=0.032  Sum_probs=42.9

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++++||||.|++.||..|+.. +.+||+||.++...
T Consensus       106 ~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          106 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             hhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            3899999999999   999999999999999999965 45799999988654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.72  E-value=3e-09  Score=71.33  Aligned_cols=47  Identities=21%  Similarity=0.598  Sum_probs=38.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC--------CCCCcc--cCcc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--------QSSCPL--CRFQ  144 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--------~~~CP~--CR~~  144 (164)
                      ..+|+||++.+...+.....+|+|.||..|+..+++.        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3689999999987555555579999999999999842        247999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.71  E-value=3.8e-09  Score=65.63  Aligned_cols=49  Identities=10%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             cccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      ..|+|+++.+.+   ++.+ ++||.|.+.||.+|++.+.+||+.+.++...+.
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L   53 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   53 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence            579999999998   8898 799999999999999888889999999876654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.3e-08  Score=80.19  Aligned_cols=48  Identities=23%  Similarity=0.493  Sum_probs=41.4

Q ss_pred             ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCC--CCCcc--cCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQ--SSCPL--CRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~--~~CP~--CR~~v~~~  148 (164)
                      ...|+||++.|.+   ++.. .|||.|++.||..|++.+  ..||+  ||+.+...
T Consensus       181 el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          181 ELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             CSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             eeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            4799999999998   8875 799999999999999654  57999  99977544

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.62  E-value=8.8e-09  Score=84.48  Aligned_cols=42  Identities=31%  Similarity=0.726  Sum_probs=38.7

Q ss_pred             cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      ..|+||++.+.+   ++.+||||. ||..|+..|    ..||+||..+..
T Consensus       296 ~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          296 RTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             CBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            789999999988   999999999 999999998    789999998854

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.35  E-value=2.6e-07  Score=62.29  Aligned_cols=45  Identities=20%  Similarity=0.586  Sum_probs=36.4

Q ss_pred             cccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCC
Q 031191          101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPM  147 (164)
Q Consensus       101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~  147 (164)
                      |.+|--++..  ..+..||+|.||.+|+..|. +..++||.|+.++..
T Consensus         4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            6666555544  67889999999999999998 567899999998743

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=98.20  E-value=1.6e-06  Score=67.66  Aligned_cols=48  Identities=21%  Similarity=0.488  Sum_probs=39.8

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC--CCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ--SSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~  149 (164)
                      ..|.||.+....|   ..-+ |+|.||..|+..|++.+  ..||.|+..+....
T Consensus       181 ~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~  231 (238)
T 3nw0_A          181 KICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI  231 (238)
T ss_dssp             CBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred             CcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            7899999999874   3334 99999999999999665  49999999876553

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.05  E-value=0.011  Score=39.21  Aligned_cols=34  Identities=18%  Similarity=0.454  Sum_probs=26.0

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHH-Hh
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILP-CL  132 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~-Wl  132 (164)
                      ..|.||++.+.......-++|+|.|+..|+.. |.
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            58999998754433333488999999999998 54

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.46  E-value=0.049  Score=33.69  Aligned_cols=44  Identities=20%  Similarity=0.620  Sum_probs=32.1

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCccCC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRFQLP  146 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~~v~  146 (164)
                      ..|.||.+.    ..+..-. |...||..|+...|...    =.||.|+....
T Consensus        13 ~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           13 ARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             CCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            689999752    3344444 99999999999888543    37999976543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=89.91  E-value=0.15  Score=29.39  Aligned_cols=43  Identities=26%  Similarity=0.648  Sum_probs=28.0

Q ss_pred             ccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCc
Q 031191          100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRF  143 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~  143 (164)
                      .|.||...-..+ .+..-. |...||..|+..=+..    .=.||.|+.
T Consensus         2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588888764332 344444 9999999999754432    225888854

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=89.71  E-value=0.099  Score=31.74  Aligned_cols=46  Identities=20%  Similarity=0.533  Sum_probs=33.2

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhc-----CCCCCcccCc
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS-----HQSSCPLCRF  143 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~-----~~~~CP~CR~  143 (164)
                      ...|+||...+.++...+.-. |..=||..|+.--..     ..-.||.|+.
T Consensus         6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            467999999886555444544 999999999864321     3457999965

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=88.63  E-value=0.3  Score=44.71  Aligned_cols=48  Identities=17%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             cccccccccccCCCccEEeCCC-CccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCN-HLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ..|+|=++-+.+   ++++|-| +.|-+..|.+||..+.+||+=|.++....
T Consensus       892 F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~  940 (968)
T 3m62_A          892 FLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED  940 (968)
T ss_dssp             GBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             hCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence            789999999999   9999987 68999999999988999999999887543

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=87.70  E-value=0.19  Score=31.40  Aligned_cols=46  Identities=24%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhc----CCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS----HQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~----~~~~CP~CR~~v  145 (164)
                      ..|.||..... ++..+.-. |..-||..|+..-..    ..-.||.|+..+
T Consensus        19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~   69 (75)
T 2k16_A           19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI   69 (75)
T ss_dssp             ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred             cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence            67999987753 44444444 899999999976543    234699997654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=87.25  E-value=0.98  Score=29.22  Aligned_cols=33  Identities=21%  Similarity=0.577  Sum_probs=21.3

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHH
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPC  131 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~W  131 (164)
                      ++.|.||-. |..++....--|+-.||..|+.+-
T Consensus        15 D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           15 DEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             SCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CcccCcccc-ccccceeccccccccccHhhcccc
Confidence            478999863 333222211127899999999985

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=87.06  E-value=0.38  Score=28.94  Aligned_cols=43  Identities=30%  Similarity=0.709  Sum_probs=29.8

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhc----CCCCCcccCcc
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS----HQSSCPLCRFQ  144 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~----~~~~CP~CR~~  144 (164)
                      ...|.||.+.   + .+..-. |...||..|+..-+.    ..=.||.|+..
T Consensus        11 ~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           11 QDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3689999873   2 344444 889999999987553    23369998653

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=85.23  E-value=0.32  Score=35.99  Aligned_cols=47  Identities=23%  Similarity=0.443  Sum_probs=34.2

Q ss_pred             cccccccccccCCCc---cEEeC-CCCccchhhHHHH------hc-----CCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSE---AKQLP-CNHLYHSECILPC------LS-----HQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~---~~~lp-C~H~Fh~~CI~~W------l~-----~~~~CP~CR~~v  145 (164)
                      ..|+||...|.+++.   .+.-. |..=||..|+.--      +.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            469999999998763   44555 9999999998421      11     145899998753

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=84.71  E-value=0.34  Score=32.56  Aligned_cols=36  Identities=22%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS  133 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~  133 (164)
                      +..|.||.+.-...+.+.--.|...||..|+...+.
T Consensus         7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~   42 (111)
T 2ysm_A            7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT   42 (111)
T ss_dssp             CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred             CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence            478999987633222233334999999999987763

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=83.97  E-value=1.6  Score=27.39  Aligned_cols=46  Identities=17%  Similarity=0.515  Sum_probs=31.4

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHh-----cCCCCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-----SHQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-----~~~~~CP~CR~~v  145 (164)
                      .-| ||...+.++...+.-. |..=||..|+.---     ...-.||.|+...
T Consensus        13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            456 8988876444444444 99999999994321     1456799998754

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=81.82  E-value=1  Score=29.28  Aligned_cols=47  Identities=26%  Similarity=0.661  Sum_probs=32.5

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~v~~~  148 (164)
                      ...|.+|.+.   | .+..-. |.-.||..|+..=+..    .-.||.|+..-..+
T Consensus        25 ~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k   76 (88)
T 1fp0_A           25 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK   76 (88)
T ss_dssp             SSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred             CCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence            4789999964   3 344444 8899999999776533    23699998654433

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=81.81  E-value=1.2  Score=25.70  Aligned_cols=43  Identities=16%  Similarity=0.366  Sum_probs=28.9

Q ss_pred             ccccccccccCCCccEEe--CCCCccchhhHHHHh----cCCCCCcccC
Q 031191          100 SCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL----SHQSSCPLCR  142 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl----~~~~~CP~CR  142 (164)
                      .|.+|...+.++...+.-  .|..=||..|+.--.    ..+-.||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            477898888665544443  388899999985321    3556788885

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.17  E-value=0.23  Score=29.37  Aligned_cols=42  Identities=26%  Similarity=0.732  Sum_probs=27.9

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCc
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRF  143 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~  143 (164)
                      +..|.||.+.   + .+..-. |...||..|+..-+...    -.||.|+.
T Consensus         9 ~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            9 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            3689999874   3 344444 89999999998654322    24777743

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=81.15  E-value=0.53  Score=34.45  Aligned_cols=44  Identities=25%  Similarity=0.674  Sum_probs=31.1

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCccC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQL  145 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~v  145 (164)
                      +..|.+|.+.   |+ +..-. |...||..|+..-+..    .=.||.|+..-
T Consensus         4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            3679999853   33 44444 8999999999776643    23699998754

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=81.04  E-value=0.64  Score=31.36  Aligned_cols=45  Identities=27%  Similarity=0.590  Sum_probs=29.8

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCc
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRF  143 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~  143 (164)
                      ..|.||.+.-.+++.+..-. |...||..|+..-|..    .=.||.|+.
T Consensus        62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            47888887533333444444 9999999999765532    236888864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-11
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-08
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-08
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-05
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	6e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	4e-04
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	4e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	0.002

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 54.1 bits (130), Expect = 2e-11
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 101 CAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145
           CA+C  E     EA+ LP C H +H+EC+   L   S+CPLCR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 52.3 bits (125), Expect = 1e-10
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 99  ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148
           E C IC ++ S  + +  LPC H +   CI   +    +CPLC+  +  +
Sbjct: 6   ERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-08
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 93  SESLSQESCAICKDEF---------------SLHSEAKQLPCNHLYHSECILPCLSHQSS 137
           +  +  ++CAIC++                 S         CNH +H  CI   L  +  
Sbjct: 16  AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 75

Query: 138 CPLCR 142
           CPL  
Sbjct: 76  CPLDN 80

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 3e-08
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 97  SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINPSNV 153
           + + C IC +      + K  PC HL  + C+     S    CP CR ++    P  V
Sbjct: 22  TFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 7e-08
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 94  ESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147
           E      C  C+ E       K LPC H   S C+    +    CP+C+   P+
Sbjct: 2   EEFQFLRCQQCQAEAK---CPKLLPCLHTLCSGCLE---ASGMQCPICQAPWPL 49

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 96  LSQESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCLSHQS-SCPLCRFQL 145
           +  + C  CK     +   K +   C H     C+       + +CP C   L
Sbjct: 1   MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 6e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS---SCPLCRFQLP 146
            C IC +      E     C+H++   C+L  L+ +     CPLC+  + 
Sbjct: 23  ECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINPSNVVS 155
           SC IC+   +   +  +  C HL+   CIL CL    S CP CR+      P+++ S
Sbjct: 25  SCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC---FPTDLES 75

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 100 SCAICKDEFSL-HSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLP 146
            C +C +   +         C +     C     + ++  CP CR   P
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 34.8 bits (79), Expect = 4e-04
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 101 CAICKDEFSLH--SEAKQLPCNHLYHSECILPCLSHQ--SSCPLCRFQ 144
           C IC +E                  H  C+   L+    ++C +C   
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 20/75 (26%)

Query: 88  NSVEISESLSQESCAICKDEFSLHSEAKQ---------------LPCNHLYHSECILPCL 132
              E  +   +E C IC ++ ++ S                     C+H +H  C+L   
Sbjct: 15  KYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74

Query: 133 SHQS-----SCPLCR 142
            + +      CP C+
Sbjct: 75  CNGNKDGSLQCPSCK 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.77
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.6
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.58
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.56
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.54
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.52
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.45
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.45
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.4
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.38
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.29
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.19
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.16
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.16
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.02
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.67
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	94.8
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	92.85
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	91.67
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	89.98
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	89.47
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	86.81
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	85.93
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	85.35
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	83.83

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.77  E-value=1.3e-19  Score=109.96  Aligned_cols=49  Identities=41%  Similarity=0.874  Sum_probs=45.6

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      +.+|+||+++|..++.++.++ |+|.||..||.+||+.+++||+||+++.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            368999999999999999887 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.60  E-value=1.4e-16  Score=100.37  Aligned_cols=48  Identities=31%  Similarity=0.741  Sum_probs=42.0

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM  147 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~  147 (164)
                      .+.|+||++.+.+  .++.+||+|.||..||.+|++.+.+||+||+++..
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4689999999965  35668899999999999999999999999998743

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-16  Score=94.16  Aligned_cols=48  Identities=19%  Similarity=0.472  Sum_probs=41.0

Q ss_pred             ccccccccccCCCcc-EEeCCCCccchhhHHHHhcC-CCCCcccCccCCC
Q 031191          100 SCAICKDEFSLHSEA-KQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPM  147 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~  147 (164)
                      +|+||+++|..++.. ..++|||.||..||.+|++. +..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            799999999877654 44579999999999999965 5679999999865

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-15  Score=100.81  Aligned_cols=49  Identities=29%  Similarity=0.569  Sum_probs=41.8

Q ss_pred             ccccccccccccCCC---------------ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191           98 QESCAICKDEFSLHS---------------EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP  146 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~  146 (164)
                      .+.|+||++.+.+..               .+..++|+|.||..||.+||+.+++||+||+++.
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            478999999887532               2567789999999999999999999999999864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-15  Score=98.02  Aligned_cols=49  Identities=29%  Similarity=0.715  Sum_probs=43.1

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINP  150 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~  150 (164)
                      ..|+||++.+.+   ++.+||||.||..||..||+ ++++||+||..+.....
T Consensus        24 ~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            579999999987   88999999999999999996 56789999999976543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.9e-15  Score=103.96  Aligned_cols=55  Identities=22%  Similarity=0.598  Sum_probs=42.5

Q ss_pred             ccccccccccccCC---------------CccEEeCCCCccchhhHHHHhcC-----CCCCcccCccCCCCCCCC
Q 031191           98 QESCAICKDEFSLH---------------SEAKQLPCNHLYHSECILPCLSH-----QSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        98 ~~~C~ICl~~~~~~---------------~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~CR~~v~~~~~~~  152 (164)
                      ++.|+||++++...               ..+..++|+|.||..||..||+.     +.+||+||+.+..+....
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~q   99 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ   99 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCC
Confidence            47899999998642               23456779999999999999953     348999999886654433

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.9e-15  Score=92.32  Aligned_cols=52  Identities=23%  Similarity=0.428  Sum_probs=41.0

Q ss_pred             ccccccccccccCC-C-ccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLH-S-EAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~-~-~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~  149 (164)
                      +..|+||++.+..+ + .+..++|+|.||..||.+|++ .+..||+||+.+...+
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            46899999986543 2 345567999999999999994 4568999999885543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.8e-14  Score=94.46  Aligned_cols=51  Identities=33%  Similarity=0.718  Sum_probs=45.0

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINPSN  152 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~~~  152 (164)
                      ..|+||++.+.+   ++.++|||.||+.||.+|++ ++..||+||.++.+.+...
T Consensus        24 l~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~   75 (86)
T d1rmda2          24 ISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES   75 (86)
T ss_dssp             TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred             cCCccCCcchhc---ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccC
Confidence            689999999998   99999999999999999995 5578999999987666544

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=6.2e-15  Score=89.21  Aligned_cols=48  Identities=13%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             ccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191          100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      .|+||++.+.+   ++.++ |||.||++||.+|++.+.+||+||+++...+.
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            59999999998   88887 99999999999999999999999999877654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-14  Score=86.44  Aligned_cols=47  Identities=30%  Similarity=0.664  Sum_probs=41.0

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS  151 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~  151 (164)
                      .+|+||++.|.+   ++.+||||.||..||.+|   +.+||+||+++......
T Consensus         7 l~C~IC~~~~~~---p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~   53 (56)
T d1bora_           7 LRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             SSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred             CCCcccCcccCC---CEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCCC
Confidence            589999999988   788999999999999876   67899999999766443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.1e-13  Score=93.43  Aligned_cols=48  Identities=27%  Similarity=0.703  Sum_probs=41.7

Q ss_pred             cccccccccccCCCccEEeCCCCccchhhHHHHhcCC---CCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ---SSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v~~~~  149 (164)
                      ..|+||++.|.+   ++.++|||.||..||..|++..   ..||+||..+...+
T Consensus        22 l~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhCC---eEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            579999999987   7789999999999999999554   48999999986554

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.29  E-value=7.6e-13  Score=80.79  Aligned_cols=47  Identities=23%  Similarity=0.571  Sum_probs=37.4

Q ss_pred             CccccccccccccCCCccEEeCC-----CCccchhhHHHHh--cCCCCCcccCccCC
Q 031191           97 SQESCAICKDEFSLHSEAKQLPC-----NHLYHSECILPCL--SHQSSCPLCRFQLP  146 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~lpC-----~H~Fh~~CI~~Wl--~~~~~CP~CR~~v~  146 (164)
                      +...|.||++++.+.   ...||     +|.||..||.+|+  +.+.+||+||+.+.
T Consensus         5 d~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            347899999988763   33343     5999999999999  45679999999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.5e-12  Score=85.69  Aligned_cols=46  Identities=24%  Similarity=0.704  Sum_probs=38.9

Q ss_pred             cccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191           99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMIN  149 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~  149 (164)
                      ..|+||++.|.+   ++.+ +|||.||..||.+|+.  ..||+||..+...+
T Consensus        23 l~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          23 LRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (97)
T ss_dssp             TSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             CCCccCCchhhc---CceeCCCCCchhHHHHHHHHh--ccccccCCcCchhh
Confidence            589999999987   6665 6999999999999984  46999999876544

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=7.4e-12  Score=80.51  Aligned_cols=48  Identities=17%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMI  148 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~  148 (164)
                      +..|+||++-|.+   ++.++|||.|+..||.+|+. .+..||+||..+...
T Consensus         7 ~l~CpIc~~l~~d---Pv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           7 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             TTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             cccCcCcCchhhh---hcccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            3789999999999   99999999999999999995 567899999987654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.16  E-value=1.6e-11  Score=78.46  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMIN  149 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~  149 (164)
                      +..|+||++.|.+   +++++|||.|++.||..|++. ...||.|+..+....
T Consensus         8 ~l~CpIc~~~m~d---PV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           8 YFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             cCCCcCcCchhhC---ceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            4789999999999   999999999999999999965 467999999886654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=77.82  Aligned_cols=50  Identities=18%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             ccccccccccccCCCccEEeCCC-CccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCN-HLYHSECILPCLSHQSSCPLCRFQLPMINP  150 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~  150 (164)
                      +..|+||++-|.+   +++++|+ |.|++.||.+||+.+..||+||.++.....
T Consensus        22 ~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             HhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            4899999999999   9999965 689999999999999999999999876543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3e-09  Score=69.77  Aligned_cols=45  Identities=18%  Similarity=0.539  Sum_probs=36.6

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHHhcCC--------CCCcccC
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ--------SSCPLCR  142 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--------~~CP~CR  142 (164)
                      ..+|+||++++...+.++.++|+|.||..|+..|++.+        -.||.|+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            36899999999877777767899999999999999421        2599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0061  Score=34.19  Aligned_cols=43  Identities=26%  Similarity=0.623  Sum_probs=29.3

Q ss_pred             ccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCc
Q 031191          100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRF  143 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~  143 (164)
                      .|.||...-..+ ..+.-. |...||..|+..-+...    =.||.||.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            688997654333 344444 99999999998876432    25888864

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.85  E-value=0.019  Score=33.53  Aligned_cols=47  Identities=19%  Similarity=0.520  Sum_probs=34.5

Q ss_pred             ccccccccccccCCCccEEeC-CCCccchhhHHHH---h--cCCCCCcccCcc
Q 031191           98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC---L--SHQSSCPLCRFQ  144 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W---l--~~~~~CP~CR~~  144 (164)
                      ...|.+|.+...+++..+.-. |+.-||..|+..=   .  ..+-.||.|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            368999999887776655555 9999999999531   1  123479999764

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.16  Score=30.70  Aligned_cols=48  Identities=15%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             ccccccccccCCCccEEeC-CCCccchhhHH--HHh-c--CCCCCcccCccCCC
Q 031191          100 SCAICKDEFSLHSEAKQLP-CNHLYHSECIL--PCL-S--HQSSCPLCRFQLPM  147 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~--~Wl-~--~~~~CP~CR~~v~~  147 (164)
                      .+.||...+..++..+.-. |.--||..|+.  ..- .  .+-.||.|+....+
T Consensus        13 v~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~gp   66 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP   66 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred             eEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcCC
Confidence            4449998776655555555 99999999994  211 1  24689999875543

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.038  Score=31.95  Aligned_cols=44  Identities=20%  Similarity=0.513  Sum_probs=29.6

Q ss_pred             CccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCccc
Q 031191           97 SQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLC  141 (164)
Q Consensus        97 ~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~C  141 (164)
                      ....|.-|+..+.+. .+..-+ |++.|+.+|=.--=+.-..||.|
T Consensus        14 ~~~~C~gC~~~l~~~-~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCC-ceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            346899999888653 223344 99999999933221444679987

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.093  Score=31.08  Aligned_cols=43  Identities=28%  Similarity=0.668  Sum_probs=29.2

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCccC
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~~v  145 (164)
                      ..|.+|.+   .|+ +..-. |...||..|+...+...    =.||.|+..-
T Consensus         8 ~~C~~C~~---~~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           8 TICRVCQK---PGD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SCCSSSCS---SSC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCC---cCE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            46777754   233 44444 99999999999877433    2599997644

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.068  Score=30.80  Aligned_cols=42  Identities=33%  Similarity=0.707  Sum_probs=28.8

Q ss_pred             cccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCcc
Q 031191           99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQ  144 (164)
Q Consensus        99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~  144 (164)
                      ..|.+|.+.   ++ ++.-. |.-.||..|+...+..    .-.||.|+..
T Consensus        10 ~~C~~C~~~---g~-lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_          10 EFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCcCCCCC---Ce-EEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            579999752   33 33333 8999999999866633    2369999754

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.93  E-value=0.066  Score=33.07  Aligned_cols=47  Identities=23%  Similarity=0.611  Sum_probs=31.0

Q ss_pred             cccccccccccCC-CccEEeC-CCCccchhhHHHHhc--------CCCCCcccCccC
Q 031191           99 ESCAICKDEFSLH-SEAKQLP-CNHLYHSECILPCLS--------HQSSCPLCRFQL  145 (164)
Q Consensus        99 ~~C~ICl~~~~~~-~~~~~lp-C~H~Fh~~CI~~Wl~--------~~~~CP~CR~~v  145 (164)
                      ..|.||....... ..++.-. |...||..|+...+.        ..-.||.|+...
T Consensus        17 ~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~   73 (88)
T d1weva_          17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             CCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchH
Confidence            5799998755432 3344444 899999999874431        133699997644

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=0.31  Score=29.86  Aligned_cols=33  Identities=21%  Similarity=0.602  Sum_probs=23.5

Q ss_pred             ccccccccccccCCCccEEeCCCCccchhhHHHH
Q 031191           98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPC  131 (164)
Q Consensus        98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~W  131 (164)
                      +..|.|| +.|...+..-.--|+-.||..|+.+-
T Consensus        15 D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          15 DEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             SCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             Ccccccc-CcccccceecceeecchhhHHHHHHh
Confidence            4799999 66766443311117899999999986

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.063  Score=30.06  Aligned_cols=43  Identities=21%  Similarity=0.497  Sum_probs=29.0

Q ss_pred             ccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccC
Q 031191          100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCR  142 (164)
Q Consensus       100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR  142 (164)
                      .|.+|...|......-.-. ||.+|+..|....-+....|..|.
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~~~RvC~~C~   45 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ   45 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred             CccccCCcccCCccCcccccCCcccCccccCCCCCCCeECHhHh
Confidence            5889999998755444444 999999999765544455677664