Citrus Sinensis ID: 031213

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR
ccHHHHHHHHcccEEEEEcccccHHHHHcccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHccccccccccccccHHHHHHHcccccccccc
ccHHHHHHHHcccEEEEEEcHHHcHHHHcccccEEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHcEEEEcccHHHHHHHHHHcccccccccccccHHHHHccccccccHHHcc
mglvshvvhrggghvlgiipktlmnkeitgetvgevkpvADMHQRKAEmarnsdcfialpggygtLEELLEVITWAQlgihdkpvglinVDGYYNSLLNFIDkavddgfispsqrsilvsAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR
mglvshvvhrggghvlgiipktlmnkEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVelntslkteiar
MglvshvvhrggghvlgIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR
****SHVVHRGGGHVLGIIPKTLMNKEITGETVGEVK*************RNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQV************
MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWE****************
MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR
*GLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKT****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query164 2.2.26 [Sep-21-2011]
Q8LBB7228 Cytokinin riboside 5'-mon yes no 0.993 0.714 0.748 2e-71
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.926 0.706 0.776 8e-67
Q8RUN2213 Cytokinin riboside 5'-mon no no 0.987 0.760 0.737 1e-66
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.951 0.725 0.743 4e-66
B9F166244 Probable cytokinin ribosi yes no 0.926 0.622 0.763 5e-65
Q8GW29217 Cytokinin riboside 5'-mon no no 0.902 0.682 0.783 2e-64
Q0JBP5250 Probable cytokinin ribosi yes no 0.969 0.636 0.735 2e-64
Q8H7U8211 Probable cytokinin ribosi no no 0.902 0.701 0.770 9e-64
Q7XDB8204 Probable cytokinin ribosi no no 0.902 0.725 0.770 6e-63
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.902 0.694 0.702 1e-58
>sp|Q8LBB7|LOG5_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1 Back     alignment and function desciption
 Score =  267 bits (683), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 143/175 (81%), Gaps = 12/175 (6%)

Query: 1   MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALP 60
           MGLVS  VH  GGHVLGIIP+TLM+KEITGET GEV  VADMH+RKAEMAR+SDCFIALP
Sbjct: 53  MGLVSQAVHEAGGHVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALP 112

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120
           GGYGTLEELLEVI WAQLGIHDKPVGL+NVDGYYN LL FIDKAVDDGFI PSQR I VS
Sbjct: 113 GGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIFVS 172

Query: 121 APNAKELVQKLEEYVPLHDGVVAKVKWEAEQVEL------------NTSLKTEIA 163
           APNAKELVQKLE Y P++DGV+AK +WE E+               NTS++TEIA
Sbjct: 173 APNAKELVQKLEAYKPVNDGVIAKSRWEVEKKVQQPQQQQQVVFCSNTSMQTEIA 227
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
255539156219 carboxy-lyase, putative [Ricinus communi 1.0 0.748 0.920 2e-84
224083235221 predicted protein [Populus trichocarpa] 1.0 0.742 0.890 3e-82
359492329 268 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.611 0.878 9e-81
302141674214 unnamed protein product [Vitis vinifera] 1.0 0.766 0.878 2e-80
147797810214 hypothetical protein VITISV_000977 [Viti 1.0 0.766 0.878 2e-80
449521776218 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.752 0.871 1e-79
449453077226 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.725 0.871 3e-79
224065703241 predicted protein [Populus trichocarpa] 1.0 0.680 0.793 7e-79
225428197229 PREDICTED: cytokinin riboside 5'-monopho 0.993 0.711 0.810 3e-75
224078472206 predicted protein [Populus trichocarpa] 0.920 0.733 0.887 5e-75
>gi|255539156|ref|XP_002510643.1| carboxy-lyase, putative [Ricinus communis] gi|223551344|gb|EEF52830.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/164 (92%), Positives = 158/164 (96%)

Query: 1   MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALP 60
           MGLVS  VHRGGGHVLGIIPKTLMNKEITGET+GEV+PVADMHQRKAEMAR+SDCFIALP
Sbjct: 56  MGLVSQEVHRGGGHVLGIIPKTLMNKEITGETIGEVRPVADMHQRKAEMARHSDCFIALP 115

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120
           GGYGTLEELLEVITWAQLGIHDKPVGL+NVDGYYN LL FIDKAVDDGFI PSQRSI+VS
Sbjct: 116 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNLLLTFIDKAVDDGFIMPSQRSIIVS 175

Query: 121 APNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTSLKTEIAR 164
           APNAKELVQKLEEYVPLHDGVVAK+KWEAEQVELN SL+TEIAR
Sbjct: 176 APNAKELVQKLEEYVPLHDGVVAKIKWEAEQVELNASLQTEIAR 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224083235|ref|XP_002306969.1| predicted protein [Populus trichocarpa] gi|222856418|gb|EEE93965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492329|ref|XP_002285924.2| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141674|emb|CBI18877.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147797810|emb|CAN74076.1| hypothetical protein VITISV_000977 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521776|ref|XP_004167905.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453077|ref|XP_004144285.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224065703|ref|XP_002301929.1| predicted protein [Populus trichocarpa] gi|222843655|gb|EEE81202.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428197|ref|XP_002281839.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 [Vitis vinifera] gi|297744519|emb|CBI37781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224078472|ref|XP_002305546.1| predicted protein [Populus trichocarpa] gi|222848510|gb|EEE86057.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.890 0.640 0.759 4.6e-57
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.884 0.680 0.755 6.8e-56
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.847 0.646 0.748 2.6e-54
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.798 0.603 0.786 2.7e-52
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.798 0.615 0.702 6.9e-47
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.737 0.601 0.776 1.1e-46
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.823 0.625 0.629 2.2e-43
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.762 0.516 0.690 5.7e-43
TAIR|locus:2180672143 LOG9 "AT5G26140" [Arabidopsis 0.762 0.874 0.571 3.6e-34
SGD|S000003591245 YJL055W "Putative protein of u 0.640 0.428 0.504 1.1e-27
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 120/158 (75%), Positives = 131/158 (82%)

Query:    18 IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
             IIP+TLM+KEITGET GEV  VADMH+RKAEMAR+SDCFIALPGGYGTLEELLEVI WAQ
Sbjct:    70 IIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALPGGYGTLEELLEVIAWAQ 129

Query:    78 LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPL 137
             LGIHDKPVGL+NVDGYYN LL FIDKAVDDGFI PSQR I VSAPNAKELVQKLE Y P+
Sbjct:   130 LGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPSQRHIFVSAPNAKELVQKLEAYKPV 189

Query:   138 HDGVVAKVKWEAE----------QVEL--NTSLKTEIA 163
             +DGV+AK +WE E          QV    NTS++TEIA
Sbjct:   190 NDGVIAKSRWEVEKKVQQPQQQQQVVFCSNTSMQTEIA 227
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2180672 LOG9 "AT5G26140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000003591 YJL055W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LBB7LOG5_ARATH3, ., 2, ., 2, ., n, 10.74850.99390.7149yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.73580.96950.636yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.76310.92680.6229yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_V1618
hypothetical protein (221 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 3e-62
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 3e-40
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 2e-36
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 0.001
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  187 bits (477), Expect = 3e-62
 Identities = 68/130 (52%), Positives = 91/130 (70%)

Query: 1   MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALP 60
           MG V+      GG V+GIIP  L  +EI    V E+  V DMH+RKA MAR +D F+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120
           GG+GTLEEL E++TW QLGIH KP+ L+N +GYY+ LL FID  V++GFISP+ R +++ 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 121 APNAKELVQK 130
             + +E V+K
Sbjct: 121 VDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 164
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 99.97
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 98.17
PF02481212 DNA_processg_A: DNA recombination-mediator protein 96.3
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 95.93
PRK10736374 hypothetical protein; Provisional 94.86
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 91.99
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 90.7
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 89.56
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 87.93
PRK13609380 diacylglycerol glucosyltransferase; Provisional 87.93
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 86.42
PRK13608391 diacylglycerol glucosyltransferase; Provisional 86.35
COG3613172 Nucleoside 2-deoxyribosyltransferase [Nucleotide t 84.12
PLN02605382 monogalactosyldiacylglycerol synthase 82.87
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 82.44
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 82.12
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information 
Probab=100.00  E-value=1.8e-44  Score=272.52  Aligned_cols=131  Identities=44%  Similarity=0.768  Sum_probs=125.8

Q ss_pred             ChHHHHHHHhcCCEEEEEeCCCccc-ccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcC
Q 031213            1 MGLVSHVVHRGGGHVLGIIPKTLMN-KEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLG   79 (164)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~-~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg   79 (164)
                      |||+|+||+++||+|+||+|+.+.+ ++.+++.+++++++++|++||.+|+++|||||+||||+|||+|+|++|+|.|++
T Consensus         1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~   80 (133)
T PF03641_consen    1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG   80 (133)
T ss_dssp             HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence            9999999999999999999999998 777888889999999999999999999999999999999999999999999999


Q ss_pred             CCCc-cEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHH
Q 031213           80 IHDK-PVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKL  131 (164)
Q Consensus        80 ~~~k-Pivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l  131 (164)
                      .++| |++|+|.+|||+++++++++|+++||+++++.+.+.+++|++|+++.|
T Consensus        81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i  133 (133)
T PF03641_consen   81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI  133 (133)
T ss_dssp             SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred             cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence            9877 999999999999999999999999999999999999999999999876

It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-58
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-37
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 1e-21
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 2e-17
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 4e-14
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 2e-06
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 119/135 (88%)
Query: 18  IIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQ 77
           IIPKTL  +E+TGETVGEV+ VAD HQRKAE A++SD FIALPGGYGTLEELLEVITWAQ
Sbjct: 75  IIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEVITWAQ 134
Query: 78  LGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPL 137
           LGIHDKPVGL+NVDGYYNSLL+FIDKAV++GFISP+ R I+VSAP AKELV+KLEEY P 
Sbjct: 135 LGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEYAPC 194
Query: 138 HDGVVAKVKWEAEQV 152
           H+ V  K+ WE E++
Sbjct: 195 HERVATKLCWEXERI 209
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
2a33_A215 Hypothetical protein; structural genomics, protein 8e-81
1ydh_A216 AT5G11950; structural genomics, protein structure 3e-80
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 5e-76
3sbx_A189 Putative uncharacterized protein; structural genom 1e-72
3qua_A199 Putative uncharacterized protein; structural genom 2e-72
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 2e-45
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 3e-44
1rcu_A195 Conserved hypothetical protein VT76; structural ge 2e-43
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 1e-30
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 4e-17
3gh1_A 462 Predicted nucleotide-binding protein; structural g 7e-17
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
 Score =  237 bits (606), Expect = 8e-81
 Identities = 118/157 (75%), Positives = 137/157 (87%)

Query: 1   MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALP 60
           MGLVS  VH GG HV+GIIPKTLM +E+TGETVGEV+ VADMHQRKAEMA++SD FIALP
Sbjct: 58  MGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALP 117

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120
           GGYGTLEELLEVITWAQLGIHDKPVGL+NVDGYYNSLL+FIDKAV++GFISP+ R I+VS
Sbjct: 118 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVS 177

Query: 121 APNAKELVQKLEEYVPLHDGVVAKVKWEAEQVELNTS 157
           AP AKELV+KLEEY P H+ V  K+ WE E++  ++ 
Sbjct: 178 APTAKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3gh1_A462 Predicted nucleotide-binding protein; structural g 100.0
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 99.98
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 99.95
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 96.5
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 96.35
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 95.11
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 94.71
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 94.14
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 93.69
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 92.6
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 91.44
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 89.26
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 88.95
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 88.65
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 84.45
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 84.09
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 81.78
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 80.74
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 80.39
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=5.7e-46  Score=300.27  Aligned_cols=154  Identities=62%  Similarity=1.049  Sum_probs=132.8

Q ss_pred             ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCC
Q 031213            1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI   80 (164)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~   80 (164)
                      |+|+++||+++||+||||+|+.+.++|..++.+++++++++|++||.+|+++|||||+||||+|||||+||+|||.|+|.
T Consensus        54 M~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~  133 (216)
T 1ydh_A           54 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGI  133 (216)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhhcCCCCCccccceeccccccc
Q 031213           81 HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEYVPLHDGVVAKVKWEAEQVEL  154 (164)
Q Consensus        81 ~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~~~  154 (164)
                      |+|||+++|.+|||+++++||++|+++|||++++.+.+.+++|++|+++.|+++.+.+.+....++|..++...
T Consensus       134 ~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~~  207 (216)
T 1ydh_A          134 HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEELGD  207 (216)
T ss_dssp             CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHHCC-------------------
T ss_pred             cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhhccC
Confidence            99999999999999999999999999999999999999999999999999999988888777889999876544
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 164
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 5e-34
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 8e-34
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 1e-33
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 1e-24
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 4e-21
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 5e-19
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

 Score =  116 bits (290), Expect = 5e-34
 Identities = 50/134 (37%), Positives = 88/134 (65%)

Query: 1   MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALP 60
           MG ++  +   GG  +G++P  L + E+  + + E+  V  MH+RKA+M+  +D FI++P
Sbjct: 46  MGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMP 105

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVS 120
           GG+GT EEL EV+ WAQ+GIH KP+GL NV+GY+  ++  +  ++ +GF + S   ++ S
Sbjct: 106 GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHS 165

Query: 121 APNAKELVQKLEEY 134
           +    EL+++++ Y
Sbjct: 166 SSRPDELIEQMQNY 179
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 95.58
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 94.69
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 94.34
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-44  Score=283.66  Aligned_cols=134  Identities=68%  Similarity=1.135  Sum_probs=131.6

Q ss_pred             ChHHHHHHHhcCCEEEEEeCCCcccccccCCccceEeecCCHHHHHHHHHHhCCeEEEccCCCcCHHHHHHHHHHHHcCC
Q 031213            1 MGLVSHVVHRGGGHVLGIIPKTLMNKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGTLEELLEVITWAQLGI   80 (164)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~el~i~~~m~~Rk~~m~~~sDafIvlPGG~GTLdEl~e~~t~~qlg~   80 (164)
                      |||+|+||+++||+|+||+|+.+.+++..++.+++++++++|++||..|++.|||||+||||+|||||++++|+|.|++.
T Consensus        47 Mga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~  126 (181)
T d1ydhb_          47 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGI  126 (181)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhHhhcCCcccccchhhhhhhhcCCcccCcceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcc
Confidence            89999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEecCccchHHHHHHHHHHHcCCCCccccCCeEEcCCHHHHHHHHHhh
Q 031213           81 HDKPVGLINVDGYYNSLLNFIDKAVDDGFISPSQRSILVSAPNAKELVQKLEEY  134 (164)
Q Consensus        81 ~~kPivlln~~gfw~~l~~~l~~~~~egfi~~~~~~~i~~~~~~ee~~~~l~~~  134 (164)
                      |+||++++|.+|||+++++|+++++++||+++++.+.+.+++|++|++++|++|
T Consensus       127 ~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         127 HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             CCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHHC
T ss_pred             cCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999986
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure