Citrus Sinensis ID: 031219

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
ccHHHHHHHHcccEEEEEcccccccccccccccccEEEEccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccHHccccEEEcccHHHHHHHHHHcccccccccccccHHHHHHccccccccccc
ccHHHHHHHHcccEEEEEEcHHHcHHHHcccccEEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHcEEEEcccHHHHHHHHHHcccccccccccccHHHHHHccccccccccc
mglvsqavydggrhvlgvipktlmpreitgdtVGEVKAVSGMHQRKAEMARQADAFIalpggygtLEELLEVITWAQlgihdkpvgllnVDGYYNSLLSFIDKAvdegfiapAARYIIVSAQTAHELICKLeeyvpkhsgvasnLSWEMEQQlgytnksdiar
mglvsqavydggrhvlgvipktlmpreitGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVasnlswemeqqlgytnksdiar
MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
******AVYDGGRHVLGVIPKTLMPREITGDTVGEVKAV**********ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSW****************
MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWE***************
MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
*GLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGY********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query163 2.2.26 [Sep-21-2011]
Q8RUN2213 Cytokinin riboside 5'-mon yes no 0.993 0.760 0.785 1e-71
B9F166244 Probable cytokinin ribosi yes no 0.993 0.663 0.791 2e-70
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.963 0.730 0.797 2e-70
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.926 0.702 0.814 1e-68
Q0JBP5250 Probable cytokinin ribosi yes no 0.981 0.64 0.770 2e-68
Q8GW29217 Cytokinin riboside 5'-mon no no 0.993 0.746 0.765 1e-67
Q8H7U8211 Probable cytokinin ribosi no no 0.907 0.701 0.831 2e-66
Q7XDB8204 Probable cytokinin ribosi no no 0.944 0.754 0.8 2e-65
Q5BPS0213 Cytokinin riboside 5'-mon no no 0.907 0.694 0.743 1e-61
Q0DFG8266 Probable cytokinin ribosi no no 0.914 0.560 0.75 8e-61
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  268 bits (686), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/163 (78%), Positives = 148/163 (90%), Gaps = 1/163 (0%)

Query: 1   MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
           MGL+SQAV++GGRHV+GVIPKTLMPREITG+TVGEVKAV+ MHQRKAEMA+ +DAFIALP
Sbjct: 52  MGLISQAVFNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALP 111

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120
           GGYGTLEELLEVITWAQLGIHDKPVGLLNV+GYYNSLLSFIDKAV+EGFI+P AR+IIVS
Sbjct: 112 GGYGTLEELLEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVS 171

Query: 121 AQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 163
           A +A EL+ KLE+YVP+H  VAS  SWEME Q+G +   +I+R
Sbjct: 172 APSAKELVKKLEDYVPRHEKVASKKSWEME-QIGLSPTCEISR 213
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|Q5BPS0|LOG2_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1 Back     alignment and function description
>sp|Q0DFG8|LOGL8_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8 OS=Oryza sativa subsp. japonica GN=LOGL8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
255538900224 carboxy-lyase, putative [Ricinus communi 1.0 0.727 0.920 5e-83
225458018216 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.754 0.926 7e-83
224082988222 predicted protein [Populus trichocarpa] 1.0 0.734 0.914 3e-81
449470108232 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.702 0.889 2e-80
449530446232 PREDICTED: cytokinin riboside 5'-monopho 1.0 0.702 0.889 2e-80
340248744224 cytokinin riboside 5'-monophosphate phos 1.0 0.727 0.884 2e-79
356518038221 PREDICTED: probable cytokinin riboside 5 1.0 0.737 0.846 9e-77
356509634221 PREDICTED: probable cytokinin riboside 5 1.0 0.737 0.840 2e-76
357466909221 Carboxy-lyase [Medicago truncatula] gi|3 1.0 0.737 0.846 3e-76
358249070215 uncharacterized protein LOC100814612 [Gl 0.938 0.711 0.875 5e-75
>gi|255538900|ref|XP_002510515.1| carboxy-lyase, putative [Ricinus communis] gi|223551216|gb|EEF52702.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  311 bits (798), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 150/163 (92%), Positives = 158/163 (96%)

Query: 1   MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
           MGLVSQAVYDGGRHVLGVIPKTLMPREITG+TVGEV+AVSGMHQRKAEMARQADAFIALP
Sbjct: 62  MGLVSQAVYDGGRHVLGVIPKTLMPREITGETVGEVRAVSGMHQRKAEMARQADAFIALP 121

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120
           GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF+ PAAR+IIVS
Sbjct: 122 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFVTPAARHIIVS 181

Query: 121 AQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 163
           AQTA+EL+ KLEEYVP+HSGVA  LSWEMEQQLGYT K+DIAR
Sbjct: 182 AQTANELMSKLEEYVPRHSGVAPKLSWEMEQQLGYTLKTDIAR 224

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458018|ref|XP_002276775.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Vitis vinifera] gi|302142639|emb|CBI19842.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082988|ref|XP_002306920.1| predicted protein [Populus trichocarpa] gi|222856369|gb|EEE93916.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470108|ref|XP_004152760.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530446|ref|XP_004172206.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|340248744|dbj|BAK52670.1| cytokinin riboside 5'-monophosphate phosphoribohydrolase [Petunia x hybrida] Back     alignment and taxonomy information
>gi|356518038|ref|XP_003527691.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6-like [Glycine max] Back     alignment and taxonomy information
>gi|356509634|ref|XP_003523551.1| PREDICTED: probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6-like [Glycine max] Back     alignment and taxonomy information
>gi|357466909|ref|XP_003603739.1| Carboxy-lyase [Medicago truncatula] gi|355492787|gb|AES73990.1| Carboxy-lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|358249070|ref|NP_001239732.1| uncharacterized protein LOC100814612 [Glycine max] gi|255646823|gb|ACU23883.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.993 0.760 0.785 3.2e-65
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.963 0.730 0.784 1.1e-62
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.993 0.746 0.765 6.2e-62
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.907 0.694 0.743 4.2e-56
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.846 0.686 0.804 8.6e-56
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.846 0.570 0.804 1.8e-55
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.938 0.671 0.705 1.3e-54
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.938 0.708 0.668 1.7e-52
TAIR|locus:2180672143 LOG9 "AT5G26140" [Arabidopsis 0.754 0.860 0.629 9.2e-36
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.901 0.75 0.453 6.9e-31
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 128/163 (78%), Positives = 148/163 (90%)

Query:     1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
             MGL+SQAV++GGRHV+GVIPKTLMPREITG+TVGEVKAV+ MHQRKAEMA+ +DAFIALP
Sbjct:    52 MGLISQAVFNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMAKHSDAFIALP 111

Query:    61 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120
             GGYGTLEELLEVITWAQLGIHDKPVGLLNV+GYYNSLLSFIDKAV+EGFI+P AR+IIVS
Sbjct:   112 GGYGTLEELLEVITWAQLGIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFISPTARHIIVS 171

Query:   121 AQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 163
             A +A EL+ KLE+YVP+H  VAS  SWEMEQ +G +   +I+R
Sbjct:   172 APSAKELVKKLEDYVPRHEKVASKKSWEMEQ-IGLSPTCEISR 213
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180672 LOG9 "AT5G26140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RUN2LOG1_ARATH3, ., 2, ., 2, ., n, 10.78520.99380.7605yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.77010.98150.64yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.79140.99380.6639yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014447001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (216 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 3e-64
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 2e-41
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 5e-36
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 3e-04
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  192 bits (490), Expect = 3e-64
 Identities = 70/128 (54%), Positives = 88/128 (68%)

Query: 1   MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
           MG V+    + G  V+G+IP  L P EI    V E+  V  MH+RKA MAR ADAF+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120
           GG+GTLEEL E++TW QLGIH KP+ LLN +GYY+ LL FID  V+EGFI+PAAR +I+ 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 121 AQTAHELI 128
                E +
Sbjct: 121 VDDPEEAV 128

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 163
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 99.97
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 98.1
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 96.36
PF02481212 DNA_processg_A: DNA recombination-mediator protein 96.35
PRK10736374 hypothetical protein; Provisional 93.7
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 93.38
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 90.91
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 87.99
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 87.44
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 85.74
COG3613172 Nucleoside 2-deoxyribosyltransferase [Nucleotide t 84.42
PRK13608391 diacylglycerol glucosyltransferase; Provisional 84.24
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 83.87
PLN02605382 monogalactosyldiacylglycerol synthase 83.4
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 81.91
PRK13609380 diacylglycerol glucosyltransferase; Provisional 80.26
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information 
Probab=100.00  E-value=7.1e-45  Score=274.11  Aligned_cols=131  Identities=42%  Similarity=0.743  Sum_probs=126.2

Q ss_pred             ChHHHHHHHhCCCeEEEEeCCCCCC-CcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcC
Q 031219            1 MGLVSQAVYDGGRHVLGVIPKTLMP-REITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG   79 (163)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~-~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg   79 (163)
                      |||+|+||+++||+|+||+|+.+.+ ++.+++.+++++.+.+|++||.+|++.|||||+||||+|||+|+|++|+|.|++
T Consensus         1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~   80 (133)
T PF03641_consen    1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG   80 (133)
T ss_dssp             HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence            9999999999999999999999998 777888899999999999999999999999999999999999999999999999


Q ss_pred             CCCC-cEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHH
Q 031219           80 IHDK-PVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL  131 (163)
Q Consensus        80 ~~~k-Pivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l  131 (163)
                      .++| |++|+|.+|||+++++|+++|+++||+++++.+.+.+++|++|++++|
T Consensus        81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i  133 (133)
T PF03641_consen   81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI  133 (133)
T ss_dssp             SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred             cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence            9887 999999999999999999999999999999999999999999999875

It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 9e-67
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-45
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 5e-25
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 9e-22
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 4e-18
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 8e-06
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (634), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 119/155 (76%), Positives = 137/155 (88%), Gaps = 1/155 (0%)
Query: 4   VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGY 63
           VSQAV+DGGRHV+G+IPKTL PRE+TG+TVGEV+AV+  HQRKAE A+ +DAFIALPGGY
Sbjct: 61  VSQAVHDGGRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGY 120
Query: 64  GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 123
           GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV+EGFI+P AR IIVSA T
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT 180
Query: 124 AHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNK 158
           A EL+ KLEEY P H  VA+ L WE E ++GY+++
Sbjct: 181 AKELVKKLEEYAPCHERVATKLCWEXE-RIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
1ydh_A216 AT5G11950; structural genomics, protein structure 4e-85
2a33_A215 Hypothetical protein; structural genomics, protein 7e-83
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 1e-76
3qua_A199 Putative uncharacterized protein; structural genom 2e-72
3sbx_A189 Putative uncharacterized protein; structural genom 3e-72
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 2e-43
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 5e-43
1rcu_A195 Conserved hypothetical protein VT76; structural ge 1e-42
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 2e-29
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 1e-15
3gh1_A462 Predicted nucleotide-binding protein; structural g 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
 Score =  248 bits (634), Expect = 4e-85
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 1   MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 60
           MGL+S+ VY+GG HVLG+IPK LMP EI+G+TVG+V+ V+ MH+RKA MA++A+AFIALP
Sbjct: 54  MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALP 113

Query: 61  GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 120
           GGYGT+EELLE+ITW+QLGIH K VGLLNVDGYYN+LL+  D  V+EGFI P AR I+VS
Sbjct: 114 GGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVS 173

Query: 121 AQTAHELICKLEEYVPKHSGVASNLSWEMEQQLGYTNKSDIAR 163
           A TA EL+ K+EEY P H  VAS+ SW++E+   Y  + +  +
Sbjct: 174 APTAKELMEKMEEYTPSHMHVASHESWKVEELGDYPGQENKPQ 216
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
3gh1_A462 Predicted nucleotide-binding protein; structural g 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 99.98
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 99.96
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 96.22
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 95.95
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 95.77
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 95.66
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 95.63
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 95.08
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 94.77
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 93.53
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 92.37
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 90.0
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 87.31
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 86.11
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 84.74
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 84.35
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 82.41
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 81.14
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 80.97
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=2.2e-46  Score=301.98  Aligned_cols=152  Identities=66%  Similarity=1.124  Sum_probs=132.5

Q ss_pred             ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219            1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI   80 (163)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~   80 (163)
                      |+|+++||+++||+||||+|+.+.++|..++.+++++++++|++||.+|+++|||||+||||+|||||+||+|||.|+|.
T Consensus        54 M~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~  133 (216)
T 1ydh_A           54 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGI  133 (216)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcc
Confidence            89999999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhhcCCCCCCccccceecccc
Q 031219           81 HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEYVPKHSGVASNLSWEMEQQ  152 (163)
Q Consensus        81 ~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~  152 (163)
                      |+|||+++|.+|||+++++|+++|+++|||++++.+.+.+++|++|+++.|+++.+...+....++|..++.
T Consensus       134 ~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~  205 (216)
T 1ydh_A          134 HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEEL  205 (216)
T ss_dssp             CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHHCC-----------------
T ss_pred             cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhhc
Confidence            999999999999999999999999999999999999999999999999999998887777778899998843
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 163
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 2e-31
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 7e-31
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 8e-31
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 9e-21
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 6e-18
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 7e-15
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 96.1
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 96.03
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 95.47
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5e-45  Score=284.84  Aligned_cols=134  Identities=69%  Similarity=1.174  Sum_probs=131.5

Q ss_pred             ChHHHHHHHhCCCeEEEEeCCCCCCCcccCCCcceEEecCCHHHHHHHHHHhcCEEEEccCCCCCHHHHHHHHHHHHcCC
Q 031219            1 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGI   80 (163)
Q Consensus         1 Mgava~ga~~~GG~viGIiP~~~~~~e~~~~~~~~li~~~~m~~Rk~~m~~~sDafIalPGG~GTLdEl~e~~~~~qlg~   80 (163)
                      |||+|+||+++||+|+||+|..+.+.|..++.+++++++++|++||..|++.||||||||||+|||||++++|+|.|++.
T Consensus        47 Mga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~  126 (181)
T d1ydhb_          47 MGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGI  126 (181)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhHhhcCCcccccchhhhhhhhcCCcccCcceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcc
Confidence            89999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccccEEEeCCHHHHHHHHHhh
Q 031219           81 HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLEEY  134 (163)
Q Consensus        81 ~~kPivlln~~Gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~ee~~~~l~~~  134 (163)
                      |+||++++|.+|||++|++|+++++++||+++++.+.+.+++|++|++++|++|
T Consensus       127 ~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         127 HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             CCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHHC
T ss_pred             cCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999987
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure