Citrus Sinensis ID: 031223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccEEEEEEcccccHHHHHcccccEEEEccccccccccccHHHHHHHHcccccEEEEcHHHHHHHHHHccEEEEcccccccccccEEEEccccccccccccccccEEEEcEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccEEEEccccccccHHccHHHHHHHHcccccEEEEcHHHHHHHHHcccEEEEEccEEEccccccEEEcccccccEEcccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiividnydSFTYNLCQYMGelgyhfevyrndeltVEELkrknprgvlispgpgapqdsgislqtvlelgptvplfgvCMGLQcigeafggkivrsplgvmhgksslvyydekgedgLLAGLSKYVSiscyniqcfah
Flexible Loop (DISEMBL)
mavaeavpiskslylddkksknnknpiivIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Low Complexity Region (SEG)
MAVAEAVPIskslylddkkskNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Disordered region (IsUnstruct)
************************NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE**********************ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF**
Disordered Region (DISOPRED)
**************************IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Disordered Region (DISEMBL)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Disordered Region (DISPRO)
***********************KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q08654	589	Anthranilate synthase com	yes	no	0.687	0.190	0.530	3e-30
P48261	190	Anthranilate synthase com	N/A	no	0.687	0.589	0.522	2e-29
P00901	198	Anthranilate synthase com	yes	no	0.779	0.641	0.435	2e-29
P20576	201	Anthranilate synthase com	yes	no	0.779	0.631	0.450	1e-28
P51362	189	Anthranilate synthase com	N/A	no	0.680	0.587	0.517	2e-28
P05379	204	Anthranilate synthase com	yes	no	0.687	0.549	0.504	1e-27
Q1XDC5	189	Anthranilate synthase com	N/A	no	0.680	0.587	0.5	1e-27
P28819	194	Para-aminobenzoate/anthra	yes	no	0.680	0.572	0.491	2e-27
P00902	194	Anthranilate synthase com	yes	no	0.687	0.577	0.469	3e-27
P06193	187	Para-aminobenzoate syntha	yes	no	0.779	0.679	0.435	3e-26

>sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 85/115 (73%), Gaps = 3/115 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS 84
           +IVIDNYDSF YN+ QY+GE+      EV+RNDE+T+EE++RKNP  ++ISPGPG P+++
Sbjct: 47  VIVIDNYDSFVYNIVQYIGEVEPDCEIEVFRNDEITIEEIERKNPTHIVISPGPGRPEEA 106

Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           GIS+  V      VP+ GVC+G Q IG AFGGKIV +   ++HGK+S + ++ KG
Sbjct: 107 GISVDVVRHFSGKVPILGVCLGHQVIGYAFGGKIVHAKR-ILHGKTSKIVHNGKG 160

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 8

>sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ EL     V RND++T++E+K  N +G++ISP PG P+DSGI
Sbjct: 2   ILLIDNYDSFTYNLAQYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           S   +  LG  +P+ GVC+G Q IG  FGGKI+++P  ++HGK S++++D KG
Sbjct: 62  SQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAP-KLIHGKPSIIFHDGKG 113

Cyanophora paradoxa (taxid: 2762)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 94/131 (71%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYN+ QY+GELG   +V RNDE+T+ +++  NP  +++SPGP  P ++G+
Sbjct: 3   LMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAGV 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           S++ +L     +P+ GVC+G Q IG+AFGG +VR+   VMHGK+S V++ +    G+  G
Sbjct: 63  SIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRAR-QVMHGKTSPVHHRDL---GVFTG 118

Query: 147 LSKYVSISCYN 157
           L+  ++++ Y+
Sbjct: 119 LNNPLTVTRYH 129

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 92/131 (70%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY GEL    +V RNDEL+VE+++   P  +++SPGP  P ++G+
Sbjct: 2   LLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGV 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL  +      +PL GVC+G Q IG+AFGG++VR+   VMHGK+S +++ +    G+ AG
Sbjct: 62  SLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRAR-QVMHGKTSPIHHKDL---GVFAG 117

Query: 147 LSKYVSISCYN 157
           L+  ++++ Y+
Sbjct: 118 LANPLTVTRYH 128

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELG+   V RNDE+ V ++K+ NP  ++ISPGPG P +SGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 138
           SL  +  L   +P+ GVC+G Q IG   GG I++ P  +MHGK+S +Y+D +
Sbjct: 62  SLDVISSLAEYIPILGVCLGHQSIGYINGGSIIKVP-KIMHGKTSQIYHDRE 112

Porphyra purpurea (taxid: 2787)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P05379|TRPG_THET8 Anthranilate synthase component II OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpG PE=4 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           ++V+DNYDSFTYNL QY+GELG    V+RND   +EE++  +P  +LISPGP  P ++G+
Sbjct: 14  VLVVDNYDSFTYNLVQYLGELGAEPIVWRNDRFRLEEVEALDPDRILISPGPCTPFEAGL 73

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           S+  V    P  P+ GVC+G Q IG AFGGK+V +P+ +MHGK S +++D  G
Sbjct: 74  SVPLVQRYAPRYPILGVCLGHQAIGAAFGGKVVPAPV-LMHGKVSPIHHDGTG 125

Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GELGY   V RNDE+ +  +K+ NP  ++ISPGPG P DSGI
Sbjct: 2   ILIIDNYDSFTYNLAQCVGELGYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGKPSDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 138
           SL  +     ++P+ GVC+G Q IG   GG+I++    +MHGK+S +Y++ +
Sbjct: 62  SLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVS-EIMHGKTSKIYHNNE 112

Porphyra yezoensis (taxid: 2788)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    V RND +T++E++  +P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 138
           SL+ +      +P+FGVC+G Q I + FGG +VR+   +MHGK+S + +D K
Sbjct: 62  SLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAE-RLMHGKTSDIEHDGK 112

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P00902|TRPG_ACIAD Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 82/113 (72%), Gaps = 1/113 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYN+ QY GEL    +V RND++T+E+++R  P+ +++ PGP +P ++GI
Sbjct: 2   LLMIDNYDSFTYNIVQYFGELNQDVKVVRNDQVTLEDIERWQPKYLVVGPGPCSPTEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           S+  +      +PL GVC+G Q IG+AFGG I+R+   VMHG+ S +Y+ +KG
Sbjct: 62  SIPAIHHFAGRIPLLGVCLGHQAIGQAFGGNIIRAKT-VMHGRLSDMYHTDKG 113

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P06193|PABA_SALTY Para-aminobenzoate synthase glutamine amidotransferase component II OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pabA PE=4 SV=1

 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/131 (43%), Positives = 85/131 (64%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL QY  ELG   +V RND LT+  +   NP+ ++ISPGP  P D+GI
Sbjct: 2   ILLIDNYDSFTWNLYQYFCELGAEVQVRRNDALTLAHIDALNPQKIVISPGPCTPNDAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL  +      +P+ GVC+G Q + +AFG  +VR+   VMHGK+S V ++ +   G+  G
Sbjct: 62  SLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRAA-KVMHGKTSPVTHNGQ---GVFRG 117

Query: 147 LSKYVSISCYN 157
           L   ++++ Y+
Sbjct: 118 LPSPLTVTRYH 128

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
356521181	276	PREDICTED: anthranilate synthase compone	0.785	0.463	0.937	8e-67
356558733	272	PREDICTED: anthranilate synthase compone	0.785	0.470	0.937	1e-66
356558731	278	PREDICTED: anthranilate synthase compone	0.785	0.460	0.937	1e-66
217072976	270	unknown [Medicago truncatula] gi|3884985	0.791	0.477	0.884	2e-63
297845630	277	hypothetical protein ARALYDRAFT_472860 [	0.883	0.519	0.810	6e-63
449449078	276	PREDICTED: anthranilate synthase compone	0.932	0.550	0.763	1e-62
255573238	281	Anthranilate synthase component II, puta	0.938	0.544	0.777	1e-62
225424454	285	PREDICTED: anthranilate synthase compone	0.926	0.529	0.770	1e-62
25403004	469	probable anthranilate synthase beta subu	0.871	0.302	0.797	2e-62
297822129	275	predicted protein [Arabidopsis lyrata su	0.932	0.552	0.757	3e-62

>gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 120/128 (93%), Positives = 126/128 (98%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEELKRKNPRGVLISPGPGA
Sbjct: 70  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGA 129

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 140
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR+P GVMHGKSS+VYYDEKGE
Sbjct: 130 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRAPHGVMHGKSSMVYYDEKGE 189

Query: 141 DGLLAGLS 148
           DG+LAGLS
Sbjct: 190 DGVLAGLS 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/128 (93%), Positives = 125/128 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 66  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 125

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 140
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+VYYDEKGE
Sbjct: 126 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKSSMVYYDEKGE 185

Query: 141 DGLLAGLS 148
           DGLLAGLS
Sbjct: 186 DGLLAGLS 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/128 (93%), Positives = 125/128 (97%)

Query: 21  KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80
           K+N NPI+VIDNYDSFTYNLCQYMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG 
Sbjct: 72  KSNNNPIVVIDNYDSFTYNLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGE 131

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 140
           PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+VYYDEKGE
Sbjct: 132 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKSSMVYYDEKGE 191

Query: 141 DGLLAGLS 148
           DGLLAGLS
Sbjct: 192 DGLLAGLS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 18  KKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77
           +KSK+N +PI+VIDNYDSFTYNLCQY+GELG HFEVYRNDELTVEELKRKNPRGVLISPG
Sbjct: 62  EKSKSN-DPIVVIDNYDSFTYNLCQYIGELGVHFEVYRNDELTVEELKRKNPRGVLISPG 120

Query: 78  PGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE 137
           PG PQDSGISLQTV ELGPT+P+FGVCMGLQC+GEAFGGKI+R+P GVMHGKSSLVYYDE
Sbjct: 121 PGTPQDSGISLQTVFELGPTIPVFGVCMGLQCMGEAFGGKIIRAPSGVMHGKSSLVYYDE 180

Query: 138 KGEDGLLAGL 147
           KGEDGLLAGL
Sbjct: 181 KGEDGLLAGL 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845630|ref|XP_002890696.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] gi|297336538|gb|EFH66955.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 130/148 (87%), Gaps = 4/148 (2%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           MA + ++P   S+ ++  K +N   PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELT
Sbjct: 54  MADSNSIP---SVVVNSSK-QNGYGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT 109

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
           VEELK KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVR
Sbjct: 110 VEELKNKNPRGVLISPGPGTPQDSGISLQTVLELGPRVPLFGVCMGLQCIGEAFGGKIVR 169

Query: 121 SPLGVMHGKSSLVYYDEKGEDGLLAGLS 148
           SP GVMHGKSS+VYYDEKGE+GL +GLS
Sbjct: 170 SPFGVMHGKSSMVYYDEKGEEGLFSGLS 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449078|ref|XP_004142292.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus] gi|449513110|ref|XP_004164233.1| PREDICTED: anthranilate synthase component II-like [Cucumis sativus]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/152 (76%), Positives = 133/152 (87%)

Query: 6   AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
           +V +++S       +K  +NPIIVIDNYDSFTYNLCQY+GELG HFEVYRND+LTV+EL+
Sbjct: 52  SVSVNESNSRTSSLNKKTQNPIIVIDNYDSFTYNLCQYVGELGCHFEVYRNDDLTVDELR 111

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 125
           RKNPRG+LISPGPGAPQDSGISLQTVLELGPT+PLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 112 RKNPRGILISPGPGAPQDSGISLQTVLELGPTIPLFGVCMGLQCIGEAFGGKIVRSPYGV 171

Query: 126 MHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157
           +HGKSS VYYDEKGE+GLL+GLS   +   Y+
Sbjct: 172 VHGKSSPVYYDEKGEEGLLSGLSNPFTAGRYH 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573238|ref|XP_002527548.1| Anthranilate synthase component II, putative [Ricinus communis] gi|223533098|gb|EEF34857.1| Anthranilate synthase component II, putative [Ricinus communis]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/157 (77%), Positives = 134/157 (85%), Gaps = 4/157 (2%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           MAV +++ +S S+      S+  KNPIIVIDNYDSFTYNLCQYMGELG +FEVYRNDELT
Sbjct: 58  MAVKQSI-LSSSI---GPNSREMKNPIIVIDNYDSFTYNLCQYMGELGCYFEVYRNDELT 113

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
           VEELKRKNPRGVLISPGPG P+DSGISL+TVLELGP VPLFGVCMGLQCIGEAFGGKIVR
Sbjct: 114 VEELKRKNPRGVLISPGPGEPRDSGISLETVLELGPLVPLFGVCMGLQCIGEAFGGKIVR 173

Query: 121 SPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157
           SP GVMHGKSS VYYDEKGEDGL +GLS   +   Y+
Sbjct: 174 SPYGVMHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYH 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424454|ref|XP_002281633.1| PREDICTED: anthranilate synthase component II-like [Vitis vinifera]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 134/157 (85%), Gaps = 6/157 (3%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M++AE+   S+S  LD+      KNPI+VIDNYDSFTYNLCQY+GELG +FEVYRNDEL+
Sbjct: 64  MSIAESN--SRSPVLDN----GTKNPIVVIDNYDSFTYNLCQYLGELGCNFEVYRNDELS 117

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
           VEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVR
Sbjct: 118 VEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGVCMGLQCIGEAFGGKIVR 177

Query: 121 SPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157
           SP GVMHGKSS VYYDEKGEDGL +GLS   +   Y+
Sbjct: 178 SPFGVMHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYH 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25403004|pir||B86381 probable anthranilate synthase beta subunit [imported] - Arabidopsis thaliana

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/148 (79%), Positives = 128/148 (86%), Gaps = 6/148 (4%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           MA + ++P   S+ ++  K      PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELT
Sbjct: 248 MAESNSIP---SVVINSSKQNG---PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELT 301

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
           VEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVR
Sbjct: 302 VEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVR 361

Query: 121 SPLGVMHGKSSLVYYDEKGEDGLLAGLS 148
           SP GVMHGKSS+V+YDEKGE+GL +GLS
Sbjct: 362 SPFGVMHGKSSMVHYDEKGEEGLFSGLS 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class: N/A

Phylum: Streptophyta

>gi|297822129|ref|XP_002878947.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324786|gb|EFH55206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/157 (75%), Positives = 132/157 (84%), Gaps = 5/157 (3%)

Query: 1   MAVAEAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT 60
           M +AE+ PI   +      SK N  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELT
Sbjct: 53  MEMAESNPIPSVV----NSSKQN-GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT 107

Query: 61  VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 120
           +EEL+RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVR
Sbjct: 108 IEELERKNPRGVLISPGPGTPQDSGISLQTVLELGPFVPLFGVCMGLQCIGEAFGGKIVR 167

Query: 121 SPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN 157
           +P GVMHGKSS+V+YDE+GE+GL +GLS    +  Y+
Sbjct: 168 APFGVMHGKSSMVHYDERGEEGLFSGLSNPFLVGRYH 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2174378	273	AT5G57890 [Arabidopsis thalian	0.834	0.498	0.838	1.7e-59
TAIR|locus:2826092	222	AT1G24909 [Arabidopsis thalian	0.809	0.594	0.863	7.3e-59
TAIR|locus:2826077	222	AT1G25083 [Arabidopsis thalian	0.809	0.594	0.863	7.3e-59
TAIR|locus:2825965	222	AT1G25155 [Arabidopsis thalian	0.809	0.594	0.863	7.3e-59
TAIR|locus:2826037	235	AT1G24807 [Arabidopsis thalian	0.809	0.561	0.786	2.3e-55
TIGR_CMR|CHY_1586	189	CHY_1586 "para-aminobenzoate/a	0.687	0.592	0.513	2.7e-29
UNIPROTKB|Q88A05	199	trpG "Anthranilate synthase, c	0.779	0.638	0.458	9.1e-29
UNIPROTKB|Q48NP9	199	trpG "Anthranilate synthase, c	0.779	0.638	0.458	1.2e-28
UNIPROTKB|Q4K501	197	trpG "Anthranilate synthase, c	0.815	0.675	0.430	5e-28
TIGR_CMR|CHY_1931	191	CHY_1931 "para-aminobenzoate/a	0.674	0.575	0.526	3.5e-27

TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 114/136 (83%), Positives = 122/136 (89%)

Query:    22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
             N+  PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRK PRG+LISPGPG P
Sbjct:    67 NSSGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKKPRGLLISPGPGTP 126

Query:    82 QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED 141
             QDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+
Sbjct:   127 QDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEE 186

Query:   142 GLLAGLSKYVSISCYN 157
             GL +GLS    +  Y+
Sbjct:   187 GLFSGLSNPFLVGRYH 202

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0004049 "anthranilate synthase activity" evidence=IGI

GO:0009617 "response to bacterium" evidence=IEP

TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/132 (86%), Positives = 120/132 (90%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLA 145
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFS 139

Query:   146 GLSKYVSISCYN 157
             GLS    +  Y+
Sbjct:   140 GLSNPFIVGRYH 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/132 (86%), Positives = 120/132 (90%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLA 145
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFS 139

Query:   146 GLSKYVSISCYN 157
             GLS    +  Y+
Sbjct:   140 GLSNPFIVGRYH 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/132 (86%), Positives = 120/132 (90%)

Query:    26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
             PIIVIDNYDSFTYNLCQYMGEL  HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSG
Sbjct:    20 PIIVIDNYDSFTYNLCQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSG 79

Query:    86 ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLA 145
             ISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +
Sbjct:    80 ISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFS 139

Query:   146 GLSKYVSISCYN 157
             GLS    +  Y+
Sbjct:   140 GLSNPFIVGRYH 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 114/145 (78%), Positives = 120/145 (82%)

Query:    26 PIIVIDNYDSFTYNLCQY-------------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
             PIIVIDNYDSFTYNLCQY             MGEL  HFEVYRNDELTVEELKRKNPRGV
Sbjct:    20 PIIVIDNYDSFTYNLCQYKQNFENCYLFLQYMGELQCHFEVYRNDELTVEELKRKNPRGV 79

Query:    73 LISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSL 132
             LISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+
Sbjct:    80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSM 139

Query:   133 VYYDEKGEDGLLAGLSKYVSISCYN 157
             V+YDEKGE+GL +GLS    +  Y+
Sbjct:   140 VHYDEKGEEGLFSGLSNPFIVGRYH 164

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 58/113 (51%), Positives = 82/113 (72%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             I++IDNYDSFTYNL QY+GELG+   V RND +T+ E++   P  ++ISPGP  P ++GI
Sbjct:     2 ILLIDNYDSFTYNLVQYLGELGHRVVVRRNDRITLSEIREMKPTHIIISPGPCTPNEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
             SL  V      +P+ GVC+G Q IG+AFGGK+++  + V HGK+SL+Y+D +G
Sbjct:    62 SLDVVRFFAGKIPILGVCLGHQVIGQAFGGKVIQDKIPV-HGKTSLIYHDGQG 113

GO:0004049 "anthranilate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

UNIPROTKB|Q88A05 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 60/131 (45%), Positives = 94/131 (71%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+ +++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIAQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
             SL+ +      +P+ GVC+G Q IG+AFGG +VR+   VMHGK+S V +++ G  G+ AG
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFGGDVVRARQ-VMHGKTSPVVHED-G--GVFAG 117

Query:   147 LSKYVSISCYN 157
             L+  + ++ Y+
Sbjct:   118 LNHPLVVTRYH 128

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

UNIPROTKB|Q48NP9 trpG "Anthranilate synthase, component II" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 60/131 (45%), Positives = 93/131 (70%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELT+E+++  NP  +++SPGP  P ++G+
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGADVKVIRNDELTIEQIEALNPERIVVSPGPCTPNEAGV 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
             SL+ +      +P+ GVC+G Q IG+AFGG +VR+   VMHGK+S V + + G  G+  G
Sbjct:    62 SLEVIKHFAGKLPILGVCLGHQSIGQAFGGDVVRARQ-VMHGKTSPVVHQD-G--GVFEG 117

Query:   147 LSKYVSISCYN 157
             L+  + ++ Y+
Sbjct:   118 LNHPLVVTRYH 128

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

UNIPROTKB|Q4K501 trpG "Anthranilate synthase, component II" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/137 (43%), Positives = 94/137 (68%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYN+ QY+GELG   +V RNDELTV +++   P  +++SPGP  P ++GI
Sbjct:     2 LLMIDNYDSFTYNVVQYLGELGAEVKVVRNDELTVAQIEALKPERIVVSPGPCTPTEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
             S++ +      +P+ GVC+G Q IG+AFGG++VR+   VMHGK+S V++ + G   +  G
Sbjct:    62 SIEAIKHFAGKLPILGVCLGHQSIGQAFGGQVVRARQ-VMHGKTSPVFHRDLG---VFNG 117

Query:   147 LSKYVSISCYNIQCFAH 163
             L+  ++++ Y+     H
Sbjct:   118 LNMPLTVTRYHSLVVKH 134

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|CHY_1931 CHY_1931 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/112 (52%), Positives = 80/112 (71%)

Query:    27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
             +++IDNYDSFTYNL QY   LG    VYRND++TVEE++  NP  ++ISPGP  P ++GI
Sbjct:     2 LLLIDNYDSFTYNLVQYFQMLGEAVTVYRNDKITVEEIRALNPDYIVISPGPCTPNEAGI 61

Query:    87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 138
             SL+ +  L    P+ GVC+G Q IG+ FGGK+VR+    MHGK+S +Y+D K
Sbjct:    62 SLEVIKNLY-RYPILGVCLGHQAIGQVFGGKVVRAARP-MHGKTSPIYHDGK 111

GO:0004049 "anthranilate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.27	LOW CONFIDENCE prediction!
3rd Layer	4.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.1__2814__AT5G57890.1	annotation not avaliable (277 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_601857.1	annotation not avaliable (444 aa)	•	•	•	•		•	•		0.994
	fgenesh1_pg.C_scaffold_5002065	annotation not avaliable (520 aa)	•	•	•		•	•	•		0.970
	fgenesh2_kg.6__508__AT5G05730.1	annotation not avaliable (596 aa)	•	•	•		•	•	•		0.968
	fgenesh2_kg.4__945__AT2G29690.1	annotation not avaliable (622 aa)	•	•	•		•	•	•		0.962
	fgenesh2_kg.8__689__AT5G48220.1	annotation not avaliable (375 aa)	•	•	•			•	•		0.947
	fgenesh2_kg.3__2787__AT2G04400.1	annotation not avaliable (402 aa)	•	•	•			•	•		0.923
	fgenesh2_kg.6__493__AT1G07780.3	annotation not avaliable (275 aa)	•					•	•		0.915
	scaffold_604010.1	annotation not avaliable (276 aa)	•		•				•		0.848
	scaffold_104513.1	annotation not avaliable (435 aa)	•		•	•		•	•		0.847
	fgenesh2_kg.7__1523__AT4G27070.1	annotation not avaliable (471 aa)	•					•	•		0.837

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	1e-93
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	6e-57
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	1e-52
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	4e-51
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	1e-45
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	2e-43
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	8e-43
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	1e-41
PRK06774	191	PRK06774, PRK06774, para-aminobenzoate synthase co	8e-39
PRK08007	187	PRK08007, PRK08007, para-aminobenzoate synthase co	3e-38
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	4e-37
PRK08857	193	PRK08857, PRK08857, para-aminobenzoate synthase co	6e-36
TIGR00566	188	TIGR00566, trpG_papA, glutamine amidotransferase o	2e-33
PRK13566	720	PRK13566, PRK13566, anthranilate synthase; Provisi	6e-23
PRK05637	208	PRK05637, PRK05637, anthranilate synthase componen	3e-22
PRK09522	531	PRK09522, PRK09522, bifunctional glutamine amidotr	1e-20
PLN02889	918	PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy	3e-17
TIGR01815	717	TIGR01815, TrpE-clade3, anthranilate synthase, alp	3e-17
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	9e-14
PRK06895	190	PRK06895, PRK06895, putative anthranilate synthase	6e-12
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	8e-12
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	1e-11
PLN02771	415	PLN02771, PLN02771, carbamoyl-phosphate synthase (	2e-11
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	4e-11
TIGR01368	358	TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt	6e-11
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	8e-11
PRK12838	354	PRK12838, PRK12838, carbamoyl phosphate synthase s	3e-10
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	3e-10
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	2e-09
CHL00197	382	CHL00197, carA, carbamoyl-phosphate synthase argin	2e-09
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	5e-09
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	7e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	1e-07
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	1e-07
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	4e-06
PRK09065	237	PRK09065, PRK09065, glutamine amidotransferase; Pr	8e-06
PRK08250	235	PRK08250, PRK08250, glutamine amidotransferase; Pr	0.002
PLN02347	536	PLN02347, PLN02347, GMP synthetase	0.003

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score =  270 bits (692), Expect = 1e-93
 Identities = 113/125 (90%), Positives = 116/125 (92%)

Query: 24  KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD 83
             PIIVIDNYDSFTYNLCQYMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG PQD
Sbjct: 18  NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQD 77

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
           SGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS V+YDEKGE+GL
Sbjct: 78  SGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGL 137

Query: 144 LAGLS 148
            +GL 
Sbjct: 138 FSGLP 142

Length = 222

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score =  176 bits (448), Expect = 6e-57
 Identities = 67/121 (55%), Positives = 90/121 (74%), Gaps = 4/121 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+GELG    VYRNDE+T+EE++  NP  +++SPGPG P ++GI
Sbjct: 2   ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL+ + E    VP+ GVC+G Q IGEAFGGK+VR+   +MHGK+S + +D     G+ AG
Sbjct: 62  SLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAK-EIMHGKTSPIEHDGS---GIFAG 117

Query: 147 L 147
           L
Sbjct: 118 L 118

Length = 189

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score =  165 bits (419), Expect = 1e-52
 Identities = 68/121 (56%), Positives = 88/121 (72%), Gaps = 4/121 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RNDE+T+EEL+  NP  ++ISPGPG P+D+GI
Sbjct: 1   ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGI 60

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL+ +  L   VP+ GVC+G Q I EAFGGK+VR+P   MHGK+S +++D     GL  G
Sbjct: 61  SLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAP-EPMHGKTSEIHHDGS---GLFKG 116

Query: 147 L 147
           L
Sbjct: 117 L 117

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  161 bits (410), Expect = 4e-51
 Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL QY+ ELG    V RND++++E ++   P  ++ISPGPG P+D+GI
Sbjct: 4   ILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGI 63

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL+ +      +P+ GVC+G Q I EAFGGK+VR+    MHGK+S++ +D     GL AG
Sbjct: 64  SLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKE-PMHGKTSIITHDGS---GLFAG 119

Query: 147 L 147
           L
Sbjct: 120 L 120

Length = 191

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score =  147 bits (373), Expect = 1e-45
 Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 4/122 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFTYNL Q +GEL     V RNDE+ + ++K  N R ++ISPGPG P+DSGI
Sbjct: 2   ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL  +    P +P+ GVC+G Q IG  FGGKI+++P   MHGK+S +Y++    D L  G
Sbjct: 62  SLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQG 117

Query: 147 LS 148
           L 
Sbjct: 118 LP 119

Length = 190

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score =  141 bits (358), Expect = 2e-43
 Identities = 53/113 (46%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL Q++GELG    V RNDE+T+ +++   P  ++ISPGP +P ++GI
Sbjct: 2   ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           S++ +      +P+FGVC+G Q I + FGG++VR+   +MHGK+SL+++D K 
Sbjct: 62  SMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAER-LMHGKTSLMHHDGKT 113

Length = 195

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score =  148 bits (375), Expect = 8e-43
 Identities = 61/114 (53%), Positives = 85/114 (74%), Gaps = 2/114 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
           II+IDNYDSFTYN+ QY+GELG    EV RNDE+T+EE++  NP  ++ISPGPG P+++G
Sbjct: 2   IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAG 61

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           IS++ +      VP+ GVC+G Q IG AFGGKIV +   ++HGK+S + ++ KG
Sbjct: 62  ISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHAKR-ILHGKTSPIDHNGKG 114

Length = 534

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score =  138 bits (349), Expect = 1e-41
 Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 7/124 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPR--GVLISPGPGAPQDS 84
           I+V+DNYDSF +NL QY+G+LG   EV+RND+  + +      +  GVL+SPGPG P+ +
Sbjct: 3   ILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA 62

Query: 85  GISLQTVLELGPT-VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
           G S+  V        PL GVC+G Q IG AFG  + R+P  ++HGK+S V++      G+
Sbjct: 63  GASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHTGV---GV 118

Query: 144 LAGL 147
           LAGL
Sbjct: 119 LAGL 122

Length = 214

>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional

 Score =  129 bits (327), Expect = 8e-39
 Identities = 55/131 (41%), Positives = 88/131 (67%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RNDEL + ++++  P  ++ISPGP  P ++GI
Sbjct: 2   LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL  +      +P+ GVC+G Q +G+AFG ++VR+   VMHGK+S + +  +   G+  G
Sbjct: 62  SLAVIRHFADKLPILGVCLGHQALGQAFGARVVRAR-QVMHGKTSAICHSGQ---GVFRG 117

Query: 147 LSKYVSISCYN 157
           L++ ++++ Y+
Sbjct: 118 LNQPLTVTRYH 128

Length = 191

>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional

 Score =  128 bits (323), Expect = 3e-38
 Identities = 56/131 (42%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I++IDNYDSFT+NL QY  ELG    V RND LT+ ++    P+ ++ISPGP  P ++GI
Sbjct: 2   ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SL  +      +P+ GVC+G Q + +AFGGK+VR+   VMHGK+S + ++ +   G+  G
Sbjct: 62  SLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAA-KVMHGKTSPITHNGE---GVFRG 117

Query: 147 LSKYVSISCYN 157
           L+  ++++ Y+
Sbjct: 118 LANPLTVTRYH 128

Length = 187

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score =  125 bits (317), Expect = 4e-37
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 6/130 (4%)

Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87
           ++IDN DSFTYNL + + ELG   EV  ND    EE+   NP G++ISPGPG+P   G +
Sbjct: 1   LLIDNGDSFTYNLARALRELGVEVEVVPNDT-PAEEILELNPDGIIISPGPGSPGALGGA 59

Query: 88  LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           ++ + EL    +P+ G+C+G Q +  AFGGK++++     HGK+S V +D+    GL  G
Sbjct: 60  IEAIKELRENKIPILGICLGHQLLALAFGGKVIKAKKEPHHGKNSPVGHDK----GLFYG 115

Query: 147 LSKYVSISCY 156
           L     +  Y
Sbjct: 116 LPNVFIVRRY 125

Length = 186

>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional

 Score =  122 bits (308), Expect = 6e-36
 Identities = 55/131 (41%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG   +V RNDE+ ++ ++  NP  ++ISPGP  P ++GI
Sbjct: 2   LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           SLQ +      +P+ GVC+G Q I + FGG++VR+   VMHGK+S + +  +    +  G
Sbjct: 62  SLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRAR-QVMHGKTSPIRHTGR---SVFKG 117

Query: 147 LSKYVSISCYN 157
           L+  ++++ Y+
Sbjct: 118 LNNPLTVTRYH 128

Length = 193

>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

 Score =  116 bits (291), Expect = 2e-33
 Identities = 54/113 (47%), Positives = 78/113 (69%), Gaps = 1/113 (0%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDNYDSFTYNL QY  ELG    V RND LT++E++   P  ++ISPGP  P ++GI
Sbjct: 2   VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGI 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           SL+ +      +P+ GVC+G Q +G+AFGG +VR+   VMHGK+S + ++  G
Sbjct: 62  SLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHNGAG 113

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188

>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional

 Score = 93.8 bits (234), Expect = 6e-23
 Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 16/136 (11%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           ++++D+ DSF + L  Y  + G      R      E L R NP  V++SPGPG P D   
Sbjct: 529 VLLVDHEDSFVHTLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC 587

Query: 87  S--LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV----MHGKSSLVYYDEKGE 140
              +   L     +P+FGVC+GLQ I EAFGG+     LG     MHGK S +    +G 
Sbjct: 588 KATIDAALARN--LPIFGVCLGLQAIVEAFGGE-----LGQLAYPMHGKPSRIRV--RGP 638

Query: 141 DGLLAGLSKYVSISCY 156
             L +GL +  ++  Y
Sbjct: 639 GRLFSGLPEEFTVGRY 654

Length = 720

>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional

 Score = 88.0 bits (218), Expect = 3e-22
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 4/123 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++IDN+DSF YNL       GY   V+RN  + VEE+   NP  + +SPGPG P+D+G 
Sbjct: 4   VVLIDNHDSFVYNLVDAFAVAGYKCTVFRN-TVPVEEILAANPDLICLSPGPGHPRDAGN 62

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG-LLA 145
            +  +      +PL G+C+G Q + E  GGK+   P G +HG +  +   + G    + A
Sbjct: 63  MMALIDRTLGQIPLLGICLGFQALLEHHGGKV--EPCGPVHGTTDNMILTDAGVQSPVFA 120

Query: 146 GLS 148
           GL+
Sbjct: 121 GLA 123

Length = 208

>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 87.4 bits (216), Expect = 1e-20
 Identities = 44/134 (32%), Positives = 81/134 (60%), Gaps = 7/134 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G++  +YRN    +  +E L   +   +++SPGPG P +
Sbjct: 4   ILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
           +G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK+S + +D  G+  +
Sbjct: 64  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHD--GQ-AM 119

Query: 144 LAGLSKYVSISCYN 157
            AGL+  + ++ Y+
Sbjct: 120 FAGLTNPLPVARYH 133

Length = 531

>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase

 Score = 77.2 bits (190), Expect = 3e-17
 Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 11/118 (9%)

Query: 28  IVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEEL-----KRKNPRGVLISPGPGAP 81
           ++IDNYDS+TYN+ Q +  + G    V RNDE T EE+     + K    ++ISPGPG+P
Sbjct: 85  LLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSP 144

Query: 82  ---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD 136
               D GI L+ +LE    +P+ GVC+G Q +G   G +IV +P  V HG+ S + ++
Sbjct: 145 TCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHAPEPV-HGRLSEIEHN 200

Length = 918

>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade

 Score = 77.2 bits (190), Expect = 3e-17
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++D+ DSF + L  Y+ + G      R+          + P  V++SPGPG P D  +
Sbjct: 519 ILLVDHEDSFVHTLANYLRQTGASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV 577

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
           +      L   +P+FGVC+GLQ + EAFGG +   P   +HGK+S +     G D L AG
Sbjct: 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEP-VHGKASRIRV--LGPDALFAG 634

Query: 147 LSKYVSISCYN 157
           L + +++  Y+
Sbjct: 635 LPERLTVGRYH 645

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 65.0 bits (159), Expect = 9e-14
 Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+V+D    +T  + + + ELG + E+  N    +EE++ KNP+G+++S GP +      
Sbjct: 1   ILVLDFGSQYTQLIARRLRELGVYSELVPNTT-PLEEIREKNPKGIILSGGPSSVYAENA 59

Query: 87  --SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 124
             + + + ELG  VP+ G+C G+Q + +  GG++ R+   
Sbjct: 60  PRADEKIFELG--VPVLGICYGMQLMAKQLGGEVGRAEKR 97

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           +++I+N+DSFT+NL   + +LG   +V   ++L ++E+  +N   +LISPGP  P+    
Sbjct: 4   LLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV--ENFSHILISPGPDVPRAYPQ 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
               +        + GVC+G Q + E FGG++      V HG+   +    +    L  G
Sbjct: 62  LFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLN-NVRHGQQRPLK--VRSNSPLFDG 118

Query: 147 LSKYVSISCY 156
           L +  +I  Y
Sbjct: 119 LPEEFNIGLY 128

Length = 190

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 59.8 bits (146), Expect = 8e-12
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 118
             EE+ + +P G+ +S GPG P     +++TV + LG  +P+FG+C+G Q +  A G K 
Sbjct: 31  DAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKT 90

Query: 119 VRSPLG 124
            +   G
Sbjct: 91  YKMKFG 96

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 61.2 bits (150), Expect = 1e-11
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 33/142 (23%)

Query: 22  NNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGVLI 74
            + + I+++D + S      QY       + ELG + E+   D  + EE++  NP+G+++
Sbjct: 1   IHHDKILILD-FGS------QYTQLIARRVRELGVYSEIVPYDI-SAEEIRAFNPKGIIL 52

Query: 75  SPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 127
           S GP      GAP+ D  I      ELG  VP+ G+C G+Q +    GGK+ R+     +
Sbjct: 53  SGGPASVYEEGAPRADPEI-----FELG--VPVLGICYGMQLMAHQLGGKVERAGKR-EY 104

Query: 128 GKSSLVYYDEKGEDGLLAGLSK 149
           G++ L   +   +  L  GL +
Sbjct: 105 GRAEL---EVDNDSPLFKGLPE 123

Length = 511

>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing)

 Score = 60.8 bits (147), Expect = 2e-11
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 62  EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
           E LK K P GVL S GPG P     +++TV EL   VP+FG+CMG Q +G+A GGK  + 
Sbjct: 276 EALKMK-PDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKM 334

Query: 122 PLGVMHG 128
             G  HG
Sbjct: 335 KFG-HHG 340

Length = 415

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 59.7 bits (146), Expect = 4e-11
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQ--DSGISL-QTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           T EE+   NP GV +S GPG P   D  I + + +LE    +P+FG+C+G Q +  A G 
Sbjct: 210 TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALGA 267

Query: 117 KIV 119
           K  
Sbjct: 268 KTY 270

Length = 360

>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 23/56 (41%), Positives = 37/56 (66%)

Query: 62  EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 117
           EE+K+ NP G+ +S GPG P     +++T+ +L   +P+FG+C+G Q +  AFG K
Sbjct: 208 EEIKKYNPDGIFLSNGPGDPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFGAK 263

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 13/102 (12%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GA 80
           I+++D    +T+ + + + ELG + E+  N    +EE+K KNP+G+++S GP       A
Sbjct: 1   ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDA 59

Query: 81  PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 122
           P+        + ELG  VP+ G+C G+Q I +A GGK+ R  
Sbjct: 60  PRVD----PEIFELG--VPVLGICYGMQLIAKALGGKVERGD 95

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 60  TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 119
           ++EE+K  NP G+++S GPG P++    L  + +L  + P+ G+C+G Q I  A G    
Sbjct: 200 SLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTE 259

Query: 120 RSPLG 124
           + P G
Sbjct: 260 KLPFG 264

Length = 354

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+++D    +   + + + ELGY +          EEL   +P G++IS GP +  D  
Sbjct: 3   KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDED 62

Query: 86  ISLQTVLEL-----GPTVPLFGVCMGLQCIGEAFGGKIVRSP 122
             L    +L      P  P+ G+C+G Q + +A GGK+ R P
Sbjct: 63  PWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP 104

Length = 198

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 15/122 (12%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYM---GELGYHFEVYRNDELT---VEELKRKNPRGVLISP 76
            +  ++ ID+YDSFTYN+ + +    ++  H     +D      +E L   +   +++ P
Sbjct: 4   QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFD--AIVVGP 61

Query: 77  GPGAP---QDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSS 131
           GPG P   QD GI +  + EL     VP+ G+C+G Q +  A G  I R P    HG+  
Sbjct: 62  GPGNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-PKHGQVY 119

Query: 132 LV 133
            +
Sbjct: 120 EM 121

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 8   PISKSLYLDDKKSKNNKNP--IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK 65
               S YL D K  ++     IIVID      YN+ + +   G    V        +++ 
Sbjct: 174 KSHPSFYLADNKRPHSSYQLKIIVIDF--GVKYNILRRLKSFGCSITVV-PATSPYQDIL 230

Query: 66  RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 117
              P G+L+S GPG P      ++TV + L   +P+FG+CMG Q +  A   K
Sbjct: 231 SYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283

Length = 382

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 55  RNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106
           R   +TV       EE+   NP G+ +S GPG P     +++T+ EL G  +P+FG+C+G
Sbjct: 200 RGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLG 259

Query: 107 LQCIGEAFGGKIV 119
            Q +  A G K  
Sbjct: 260 HQLLALALGAKTY 272

Length = 368

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 51.8 bits (125), Expect = 7e-09
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 26  PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG 85
            I+V+DN   + + + + +  LG   ++  N    VEE+K     G+++S GP   + +G
Sbjct: 1   KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK-AFEDGLILSGGPDI-ERAG 57

Query: 86  ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLA 145
              + + EL   VP+ G+C+G Q I +AFGG++ R      +G+ +LV  +   ED +L 
Sbjct: 58  NCPEYLKELD--VPILGICLGHQLIAKAFGGEVGRGE----YGEYALVEVEILDEDDILK 111

Query: 146 GLSK 149
           GL  
Sbjct: 112 GLPP 115

Length = 184

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+           +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLARDEALLALLREAAAAG--KPILGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 27  IIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQ 82
           + V+    S      +    + E G   +V   D   VE ++   +  G+++  GPG P 
Sbjct: 1   VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60

Query: 83  DSGIS------LQTVLELGPTVPLFGVCMGLQCI 110
           D          L+     G   P+ G+C+G Q +
Sbjct: 61  DLAWDEALLALLREAAAAG--KPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 88  LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 124
           ++  L  G   P+ G+C+G Q +  A GGK+ R+P G
Sbjct: 74  IRQALAAG--KPVLGICLGHQLLARALGGKVGRNPKG 108

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 98  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 147
           +PL G+C G Q +  A GG++  +P G   G  ++  +    +D L AGL
Sbjct: 89  MPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGL 138

Length = 237

>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 102 GVCMGLQCIGEAFGGKIVRSP 122
           GVC+G Q IGEA G K   SP
Sbjct: 89  GVCLGAQLIGEALGAKYEHSP 109

Length = 235

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP- 78
           +K+  + ++++D    +T+ + + + ELG +  +      +++ +   NPR V++S GP 
Sbjct: 6   AKSYLDVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPH 64

Query: 79  -----GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 119
                GAP           E G  VP+ G+C G+Q I +  GG++ 
Sbjct: 65  SVHVEGAPTVPEGFFDYCRERG--VPVLGICYGMQLIVQKLGGEVK 108

Length = 536

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	100.0
PRK08007	187	para-aminobenzoate synthase component II; Provisio	100.0
PRK06774	191	para-aminobenzoate synthase component II; Provisio	100.0
PLN02335	222	anthranilate synthase	100.0
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	100.0
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	100.0
CHL00101	190	trpG anthranilate synthase component 2	100.0
PRK06895	190	putative anthranilate synthase component II; Provi	100.0
PRK08857	193	para-aminobenzoate synthase component II; Provisio	100.0
PRK05670	189	anthranilate synthase component II; Provisional	100.0
PRK05637	208	anthranilate synthase component II; Provisional	99.97
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.97
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.96
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.96
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.96
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	99.96
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.96
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.95
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.95
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.95
PRK00758	184	GMP synthase subunit A; Validated	99.95
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.95
PLN02347	536	GMP synthetase	99.95
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.95
PRK13566	720	anthranilate synthase; Provisional	99.94
PRK00074	511	guaA GMP synthase; Reviewed	99.94
PRK07053	234	glutamine amidotransferase; Provisional	99.94
PRK06490	239	glutamine amidotransferase; Provisional	99.93
PRK08250	235	glutamine amidotransferase; Provisional	99.93
PRK05665	240	amidotransferase; Provisional	99.92
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.92
PRK09065	237	glutamine amidotransferase; Provisional	99.92
PRK07567	242	glutamine amidotransferase; Provisional	99.91
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.91
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.9
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.9
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.9
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.9
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.9
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.89
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.89
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.89
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.89
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.88
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.88
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.87
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.87
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.87
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.87
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.87
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.86
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.85
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.84
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.83
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.82
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.79
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.79
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.76
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.75
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.72
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.72
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.71
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.7
COG2071	243	Predicted glutamine amidotransferases [General fun	99.69
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.69
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.68
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.67
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.67
PRK05380	533	pyrG CTP synthetase; Validated	99.67
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.66
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.63
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.6
PLN02327	557	CTP synthase	99.57
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.54
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.53
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.46
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.44
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.43
PRK06186	229	hypothetical protein; Validated	99.41
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	99.35
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.32
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.25
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	99.15
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	99.11
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	99.09
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	99.02
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.96
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.84
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	98.83
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.76
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.74
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.65
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	98.63
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.62
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	98.6
PRK00784	488	cobyric acid synthase; Provisional	98.57
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	98.56
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	98.49
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.44
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.42
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.41
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	98.37
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	98.36
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	98.34
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	98.34
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	98.33
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.28
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	98.27
PHA03366	1304	FGAM-synthase; Provisional	98.21
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	98.19
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.15
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.13
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	98.11
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	98.11
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	98.09
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.09
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.08
PRK04155	287	chaperone protein HchA; Provisional	98.07
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	98.05
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.04
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.93
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.89
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	97.86
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	97.84
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	97.82
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	97.75
PRK11249	752	katE hydroperoxidase II; Provisional	97.74
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.71
COG3442	250	Predicted glutamine amidotransferase [General func	97.54
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	97.48
KOG2764	247	consensus Putative transcriptional regulator DJ-1	97.39
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	97.23
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	97.19
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	97.1
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	97.04
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	96.9
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.82
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	96.78
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.54
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	96.5
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	96.34
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	95.95
PRK04539	296	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.7
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	95.6
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	95.52
PRK03708	277	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.52
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	95.46
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	95.44
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	95.33
PRK01911	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.29
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.2
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	95.17
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	95.04
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	94.99
PRK14076	569	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	94.35
COG3155	217	ElbB Uncharacterized protein involved in an early	94.34
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	94.32
COG4090	154	Uncharacterized protein conserved in archaea [Func	93.89
PRK02649	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.75
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	93.51
COG4635	175	HemG Flavodoxin [Energy production and conversion	93.35
PF00072	112	Response_reg: Response regulator receiver domain;	93.32
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	93.29
PRK14077	287	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	93.21
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.14
PLN02929	301	NADH kinase	93.09
PRK14075	256	pnk inorganic polyphosphate/ATP-NAD kinase; Provis	92.18
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	92.17
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	91.48
PRK04885	265	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	91.48
PRK02231	272	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	90.91
smart00852	135	MoCF_biosynth Probable molybdopterin binding domai	90.5
PRK05569	141	flavodoxin; Provisional	90.36
KOG1467	556	consensus Translation initiation factor 2B, delta	89.84
COG4977	328	Transcriptional regulator containing an amidase do	89.74
COG0303	404	MoeA Molybdopterin biosynthesis enzyme [Coenzyme m	89.64
PRK01215	264	competence damage-inducible protein A; Provisional	89.45
PF06490	109	FleQ: Flagellar regulatory protein FleQ; InterPro:	89.44
PRK09468	239	ompR osmolarity response regulator; Provisional	89.42
PRK10816	223	DNA-binding transcriptional regulator PhoP; Provis	89.41
PRK01185	271	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.31
cd00885	170	cinA Competence-damaged protein. CinA is the first	89.08
PRK11083	228	DNA-binding response regulator CreB; Provisional	88.68
COG4126	230	Hydantoin racemase [Amino acid transport and metab	88.54
cd00758	133	MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin	88.39
PRK09417	193	mogA molybdenum cofactor biosynthesis protein MogA	88.16
TIGR00177	144	molyb_syn molybdenum cofactor synthesis domain. Th	87.94
cd03142	215	GATase1_ThuA Type 1 glutamine amidotransferase (GA	87.81
PF00455	161	DeoRC: DeoR C terminal sensor domain; InterPro: IP	87.59
PRK05568	142	flavodoxin; Provisional	87.34
PRK14690	419	molybdopterin biosynthesis protein MoeA; Provision	87.18
PRK10336	219	DNA-binding transcriptional regulator QseB; Provis	87.14
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	87.1
PRK15029	755	arginine decarboxylase; Provisional	86.8
PRK10161	229	transcriptional regulator PhoB; Provisional	86.44
PRK10680	411	molybdopterin biosynthesis protein MoeA; Provision	86.39
PLN02935	508	Bifunctional NADH kinase/NAD(+) kinase	86.25
PRK09836	227	DNA-binding transcriptional activator CusR; Provis	85.84
PLN02727	986	NAD kinase	85.77
PRK03673	396	hypothetical protein; Provisional	85.37
PRK09271	160	flavodoxin; Provisional	84.77
COG2204	464	AtoC Response regulator containing CheY-like recei	84.71
PRK06756	148	flavodoxin; Provisional	84.66
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	84.61
PRK00549	414	competence damage-inducible protein A; Provisional	84.15
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	83.78
PRK03767	200	NAD(P)H:quinone oxidoreductase; Provisional	83.64
PRK10766	221	DNA-binding transcriptional regulator TorR; Provis	83.5
TIGR01755	197	flav_wrbA NAD(P)H:quinone oxidoreductase, type IV.	83.25
PRK03094	80	hypothetical protein; Provisional	83.09
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	83.01
PRK13435	145	response regulator; Provisional	82.79
PF01513	285	NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me	82.73
TIGR00200	413	cinA_nterm competence/damage-inducible protein Cin	82.62
PRK03670	252	competence damage-inducible protein A; Provisional	82.57
PRK09390	202	fixJ response regulator FixJ; Provisional	82.29
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	82.22
cd03522	312	MoeA_like MoeA_like. This domain is similar to a d	82.16
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	81.45
CHL00148	240	orf27 Ycf27; Reviewed	81.4
COG0745	229	OmpR Response regulators consisting of a CheY-like	81.34
TIGR02154	226	PhoB phosphate regulon transcriptional regulatory	81.12
PRK09191	261	two-component response regulator; Provisional	81.11
PF09075	48	STb_secrete: Heat-stable enterotoxin B, secretory;	80.86
PRK03501	264	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.77
PRK11173	237	two-component response regulator; Provisional	80.67
smart00448	55	REC cheY-homologous receiver domain. CheY regulate	80.27
PRK06242	150	flavodoxin; Provisional	80.26
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	80.14
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	80.01

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=4.9e-35  Score=220.82  Aligned_cols=134  Identities=46%  Similarity=0.855  Sum_probs=121.7

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      +||++|||+|||+++++++++++|+++.+++++..+.+.++..++|+||||+||++|.|.+...+.|+++.+++|+||||
T Consensus         2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVC   81 (191)
T COG0512           2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVC   81 (191)
T ss_pred             ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEEC
Confidence            57999999999999999999999999999998855666676678999999999999999998899999997889999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||.|+++|||+|.+.+ .+.||..+.+...   ++.+|+|+|+.|.|..|||..++
T Consensus        82 LGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~---g~~iF~glp~~f~v~RYHSLvv~  135 (191)
T COG0512          82 LGHQAIAEAFGGKVVRAK-EPMHGKTSIITHD---GSGLFAGLPNPFTVTRYHSLVVD  135 (191)
T ss_pred             ccHHHHHHHhCCEEEecC-CCcCCeeeeeecC---CcccccCCCCCCEEEeeEEEEec
Confidence            999999999999999998 6889998766554   57899999999999999998764

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=3.5e-34  Score=218.70  Aligned_cols=133  Identities=42%  Similarity=0.796  Sum_probs=117.6

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||++|||+|||++++.++|+++|+++.++++++.+.+++...+||+|||||||++|.+.....++++.+.+++|+||||+
T Consensus         1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl   80 (187)
T PRK08007          1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL   80 (187)
T ss_pred             CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence            49999999999999999999999999999988667777766689999999999999887766777777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+||.++||+|.+.. ..++|..+++..+   .+++|+++|..+.|++||+++|+
T Consensus        81 G~Q~la~a~Gg~v~~~~-~~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~  133 (187)
T PRK08007         81 GHQAMAQAFGGKVVRAA-KVMHGKTSPITHN---GEGVFRGLANPLTVTRYHSLVVE  133 (187)
T ss_pred             HHHHHHHHcCCEEEeCC-CcccCCceEEEEC---CCCcccCCCCCcEEEEcchhEEc
Confidence            99999999999999988 4578877777765   45799999999999999999883

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=1.2e-33  Score=216.18  Aligned_cols=132  Identities=42%  Similarity=0.812  Sum_probs=116.1

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||++|||+|||+++++++|++.|+++.+++++..+.+++.+.++|+|||+|||+++.+.+....+++.+++++|+||||+
T Consensus         1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~   80 (191)
T PRK06774          1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL   80 (191)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence            49999999999999999999999999999987666778876789999999999999887666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |||+||.++||+|.+.. .+++|+...+...   .+++|+++|+.+.+++||++.|
T Consensus        81 G~Qlla~~~GG~v~~~~-~~~~G~~~~~~~~---~~~lf~~l~~~~~v~~~Hs~~v  132 (191)
T PRK06774         81 GHQALGQAFGARVVRAR-QVMHGKTSAICHS---GQGVFRGLNQPLTVTRYHSLVI  132 (191)
T ss_pred             HHHHHHHHhCCEEEeCC-cceecceEEEEec---CchhhcCCCCCcEEEEeCccee
Confidence            99999999999999987 4688997544332   5789999999999999999987

>PLN02335 anthranilate synthase

Probab=100.00  E-value=2e-33  Score=219.76  Aligned_cols=144  Identities=80%  Similarity=1.301  Sum_probs=124.4

Q ss_pred             hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV   98 (163)
Q Consensus        19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~   98 (163)
                      .+++.+.+|+|||++++|++++.++|+++|+++++++++..+.+++...++|+|||+|||++|+|.+...++++++..++
T Consensus        13 ~~~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~   92 (222)
T PLN02335         13 NSSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLV   92 (222)
T ss_pred             cccCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCC
Confidence            56677789999999999999999999999999999998755666665567999999999999998776667777777789


Q ss_pred             CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |+||||+|||+|+.++||+|.+.+.++++|...++..+....++||+++|+.+.+++||+|+|+
T Consensus        93 PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~  156 (222)
T PLN02335         93 PLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIE  156 (222)
T ss_pred             CEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEe
Confidence            9999999999999999999999875567877777776653357899999999999999999984

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=100.00  E-value=1.5e-33  Score=216.51  Aligned_cols=132  Identities=40%  Similarity=0.790  Sum_probs=116.3

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||+||||+|||++++.++|+++|.++.++++++.+.+++...++|+|||+|||++|++.+...+.++.+.+++|+||||+
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl   80 (195)
T PRK07649          1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL   80 (195)
T ss_pred             CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence            59999999999999999999999999999987666677766689999999999999987666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |||+|+.++||+|.+.+ ..++|+..++..+   ++++|+++|+.|.+++||++.|
T Consensus        81 G~Qlla~~lGg~V~~~~-~~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~H~~~v  132 (195)
T PRK07649         81 GHQSIAQVFGGEVVRAE-RLMHGKTSLMHHD---GKTIFSDIPNPFTATRYHSLIV  132 (195)
T ss_pred             HHHHHHHHcCCEEeeCC-CcccCCeEEEEEC---CChhhcCCCCCCEEEEechheE
Confidence            99999999999999987 4678887666543   4689999999999999999987

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=100.00  E-value=2.2e-32  Score=208.89  Aligned_cols=132  Identities=43%  Similarity=0.780  Sum_probs=115.1

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||++|||+|||+.++.++|+++|+++.+++++..+.+++...++|+|||||||+++.+.....++++++.+++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~   80 (188)
T TIGR00566         1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL   80 (188)
T ss_pred             CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence            49999999999999999999999999999977556777766689999999999999876555677777777899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |||+|+.++||+|.+.+ ..++|..+++.++   .+++|.++++.|.+++||++.|
T Consensus        81 G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~---~~~~~~~l~~~~~v~~~H~~~v  132 (188)
T TIGR00566        81 GHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN---GAGIFRGLFNPLTATRYHSLVV  132 (188)
T ss_pred             HHHHHHHHcCCEEeeCC-CccccceEEEEEC---CCccccCCCCCcEEEEcccceE
Confidence            99999999999999987 4567866677765   4568999988899999999988

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>CHL00101 trpG anthranilate synthase component 2

Probab=100.00  E-value=1.9e-32  Score=209.64  Aligned_cols=133  Identities=47%  Similarity=0.851  Sum_probs=113.2

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||+||||+|+|++++.++|++.|+++.+++++..+.+++...++|||||+|||+++.+......+++.+++++|+||||+
T Consensus         1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl   80 (190)
T CHL00101          1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL   80 (190)
T ss_pred             CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence            49999999999999999999999999999977556666655589999999999999876555555555678899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+||.++||+|.+.+ ..++|+...+...   .+++|+++|+.+.+++||+|.|+
T Consensus        81 G~Qlla~~~Gg~V~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~  133 (190)
T CHL00101         81 GHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQGLPNPFTATRYHSLIID  133 (190)
T ss_pred             hHHHHHHHhCCEEEECC-CcccCceeeEeeC---CcHhhccCCCceEEEcchhheee
Confidence            99999999999999988 4568887555532   57899999999999999999983

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=100.00  E-value=2.6e-32  Score=208.74  Aligned_cols=133  Identities=29%  Similarity=0.528  Sum_probs=113.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      |||+||||+|+|+.++.++|++.|+++.+++++..+.+++.  ++|+|||+|||+++.+.+.+.++++++++++|+||||
T Consensus         2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIC   79 (190)
T PRK06895          2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVC   79 (190)
T ss_pred             cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEc
Confidence            68999999999999999999999999999987644444554  7999999999997765556677787777889999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+||.++||+|.+.+ ..++|+...+....  +++||+++|+++.+++||+++|+
T Consensus        80 lG~Qlla~~~Gg~V~~~~-~~~~g~~~~v~~~~--~~~l~~~~~~~~~v~~~Hs~~v~  134 (190)
T PRK06895         80 LGHQTLCEFFGGELYNLN-NVRHGQQRPLKVRS--NSPLFDGLPEEFNIGLYHSWAVS  134 (190)
T ss_pred             HHHHHHHHHhCCeEeecC-CCccCceEEEEECC--CChhhhcCCCceEEEcchhheec
Confidence            999999999999999876 35677765666543  68999999999999999999984

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=5.4e-32  Score=207.48  Aligned_cols=133  Identities=41%  Similarity=0.789  Sum_probs=114.8

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||++|||+|||++++.++|+++|+++++++++..+.+++...++|++|++|||+++++.....++++.+++++|+||||+
T Consensus         1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl   80 (193)
T PRK08857          1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL   80 (193)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence            49999999999999999999999999999987545555555579999999999999876666677777778899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+||.++||+|.+.+ ..++|+..++..+   ++++|+++|+.+.|++||+++|.
T Consensus        81 G~Qlia~a~Gg~v~~~~-~~~~G~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~  133 (193)
T PRK08857         81 GHQAIAQVFGGQVVRAR-QVMHGKTSPIRHT---GRSVFKGLNNPLTVTRYHSLVVK  133 (193)
T ss_pred             HHHHHHHHhCCEEEeCC-CceeCceEEEEEC---CCcccccCCCccEEEEccEEEEE
Confidence            99999999999999987 4578986666654   46799999999999999999873

>PRK05670 anthranilate synthase component II; Provisional

Probab=100.00  E-value=4.3e-32  Score=207.30  Aligned_cols=133  Identities=51%  Similarity=0.939  Sum_probs=114.9

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEeh
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ||+|||++|+|++++.++|+++|+++++++++....+++...++|||||+|||+++.+.....++++++.+++|+||||+
T Consensus         1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl   80 (189)
T PRK05670          1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL   80 (189)
T ss_pred             CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence            59999999999999999999999999999987445555555579999999999999877666777777777899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+|+.++||+|.+.+ ..++|+..++...   .+++|+++|+++.+++||+|.|+
T Consensus        81 G~Qlla~alGg~v~~~~-~~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~  133 (189)
T PRK05670         81 GHQAIGEAFGGKVVRAK-EIMHGKTSPIEHD---GSGIFAGLPNPFTVTRYHSLVVD  133 (189)
T ss_pred             HHHHHHHHhCCEEEecC-CcccCceeEEEeC---CCchhccCCCCcEEEcchhheec
Confidence            99999999999999987 4578887666632   57899999999999999999983

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.97  E-value=2.3e-30  Score=200.68  Aligned_cols=135  Identities=33%  Similarity=0.613  Sum_probs=112.8

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      .+|++||++|+|++++.++|+++|+++++++++ .+.+++...+||+|||||||+++.|.....++++.+.+++|+||||
T Consensus         2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC   80 (208)
T PRK05637          2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC   80 (208)
T ss_pred             CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence            469999999999999999999999999999986 4567776568999999999999988765566666554679999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCC------------CceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLS------------KYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp------------~~~~v~~~H~~~v~  162 (163)
                      +|||+|+.++||+|.+..  +++|....+.+++ +..+++|+++|            +++.|++||+|.|.
T Consensus        81 lG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~  149 (208)
T PRK05637         81 LGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCV  149 (208)
T ss_pred             HHHHHHHHHcCCeeccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhh
Confidence            999999999999999765  4678766666553 33578999886            46899999999874

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.97  E-value=7.8e-30  Score=196.09  Aligned_cols=134  Identities=28%  Similarity=0.432  Sum_probs=114.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHHh-CCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLEL-GPTV   98 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~~-~~~~   98 (163)
                      .+|+|+|+++++++.+.+++++.| ...++.+++ .+.++++..++||+||+|||.++++++    ...++|+++ ..++
T Consensus         2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~   80 (198)
T COG0518           2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK   80 (198)
T ss_pred             cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence            479999999999999999999999 777777775 556666666889999999999998765    357777775 5677


Q ss_pred             CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCce-EEeeeeeceec
Q 031223           99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYV-SISCYNIQCFA  162 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~-~v~~~H~~~v~  162 (163)
                      |+||||+|||+||.++||+|.+... .|+|+. ++++++ ..++||+++|..+ .|++||+|+|+
T Consensus        81 pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~-~v~~~~-~~~~l~~gl~~~~~~v~~sH~D~v~  142 (198)
T COG0518          81 PVLGICLGHQLLAKALGGKVERGPK-REIGWT-PVELTE-GDDPLFAGLPDLFTTVFMSHGDTVV  142 (198)
T ss_pred             CEEEEChhHHHHHHHhCCEEeccCC-CccceE-EEEEec-CccccccCCccccCccccchhCccc
Confidence            8999999999999999999999984 799997 788874 3568999999888 59999999986

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.96  E-value=4.2e-29  Score=189.82  Aligned_cols=132  Identities=52%  Similarity=0.905  Sum_probs=109.3

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehH
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G  106 (163)
                      |+|||++++|++++.++|++.|+++++++++.......+..++||||++|||+++.+......+++.+.+++|+||||+|
T Consensus         1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G   80 (184)
T cd01743           1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG   80 (184)
T ss_pred             CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence            68999999999999999999999999999874322211234899999999999987765444444446678999999999


Q ss_pred             HHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          107 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       107 ~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||+||.++||+|.+.+ ..++|+.++++.+   ++++|+++|+.+.+++||+|+|+
T Consensus        81 ~Qlla~~~Gg~v~~~~-~~~~g~~~~v~~~---~~~~~~~~~~~~~~~~~H~~~v~  132 (184)
T cd01743          81 HQAIAEAFGGKVVRAP-EPMHGKTSEIHHD---GSGLFKGLPQPFTVGRYHSLVVD  132 (184)
T ss_pred             HHHHHHHhCCEEEeCC-CCCcCceeEEEEC---CCccccCCCCCcEEEeCcEEEEe
Confidence            9999999999999987 3467777777765   47899999999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.96  E-value=7.9e-29  Score=192.88  Aligned_cols=133  Identities=43%  Similarity=0.760  Sum_probs=111.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvL  101 (163)
                      |||+++|+++++++++.++|++.|+.+++++++....++..  ..++|||||+|||+++.+.....++++++ ++++|+|
T Consensus         1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL   80 (214)
T PRK07765          1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL   80 (214)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence            58999999999999999999999999999998742222332  23799999999999887765566788884 6789999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |||+|||+|+.++||+|.+.+ ..++|..+.+.++   .+.+|.++++.+.+++||+|.|
T Consensus        81 GIC~G~Qlla~a~GG~v~~~~-~~~~g~~~~v~~~---~~~~~~~~~~~~~v~~~H~~~v  136 (214)
T PRK07765         81 GVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHT---GVGVLAGLPDPFTATRYHSLTI  136 (214)
T ss_pred             EEccCHHHHHHHhCCEEeeCC-CCccCceeEEEEC---CCccccCCCCccEEEecchheE
Confidence            999999999999999999987 3567887677765   3558999999999999999988

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.96  E-value=2e-28  Score=212.01  Aligned_cols=134  Identities=32%  Similarity=0.604  Sum_probs=112.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (163)
                      +||+||||+|||++++.++|+++|.++.+++++..   ..+++...++|+|||||||++|.|.+...++++++..++|||
T Consensus         2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL   81 (531)
T PRK09522          2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII   81 (531)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence            47999999999999999999999999999986521   245565557899999999999988765555555566789999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+|||+|+.++||+|.+.. ..++|+...+...   ++++|.++|.++.|++||++.|.
T Consensus        82 GIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~Hs~~v~  138 (531)
T PRK09522         82 GICLGHQAIVEAYGGYVGQAG-EILHGKASSIEHD---GQAMFAGLTNPLPVARYHSLVGS  138 (531)
T ss_pred             EEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEeec---CCccccCCCCCcEEEEehheecc
Confidence            999999999999999999987 4678887555543   46799999999999999999873

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=99.96  E-value=8.1e-28  Score=177.15  Aligned_cols=137  Identities=82%  Similarity=1.365  Sum_probs=126.2

Q ss_pred             CeEEEEECCCChHHHHHHHH-HHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l-~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      ..|.+|||+|||+.++.++| -+.|+.+.++++|+.+.+++...++++++||+||+.|.|.+-..+.++++...+|+|||
T Consensus        19 ~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGv   98 (223)
T KOG0026|consen   19 GPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGV   98 (223)
T ss_pred             CCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeee
Confidence            45999999999999999999 67899999999999999999888999999999999999888888999999889999999


Q ss_pred             ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |.|.|.|..+|||+|.+.+.+..||...+|.++.+.+..+|+++|+.|.|..||+.+.
T Consensus        99 CMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~  156 (223)
T KOG0026|consen   99 CMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVI  156 (223)
T ss_pred             ehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCCeEEEeeeeeee
Confidence            9999999999999999988666789998898876556889999999999999999865

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.96  E-value=1e-27  Score=182.91  Aligned_cols=130  Identities=26%  Similarity=0.438  Sum_probs=110.0

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEeh
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM  105 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~  105 (163)
                      |+|||++++|+.++.++|++.|+++++++++ .+.+++...++|||||+||+.++++... ..++++ +++++|+||||+
T Consensus         1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~   78 (188)
T TIGR00888         1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICY   78 (188)
T ss_pred             CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECH
Confidence            6899999999999999999999999999986 3566665445779999999998876542 455666 478899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+|+.++||+|.+.+ .+++|+. .+.+++  .++||.++|+++.++++|+|.|.
T Consensus        79 G~Qll~~~lgg~v~~~~-~~~~g~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~  131 (188)
T TIGR00888        79 GMQLMAKQLGGEVGRAE-KREYGKA-ELEILD--EDDLFRGLPDESTVWMSHGDKVK  131 (188)
T ss_pred             HHHHHHHhcCceEecCC-CccceeE-EEEEec--CCHhhcCCCCCcEEEeEccceee
Confidence            99999999999999987 4688986 666664  57899999999999999999873

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.95  E-value=3.2e-28  Score=185.50  Aligned_cols=132  Identities=36%  Similarity=0.555  Sum_probs=110.8

Q ss_pred             EEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH--hccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEe
Q 031223           28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC  104 (163)
Q Consensus        28 lvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~--~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC  104 (163)
                      ||||++++|++++.++++++|.++++++++. +....  ...++|+|||+||+++++|.....++++++ ++++|+||||
T Consensus         1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC   79 (192)
T PF00117_consen    1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC   79 (192)
T ss_dssp             EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred             CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence            6899999999999999999999999999763 22232  245899999999999999865566777774 6789999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+||.++||+|.+.+..+++|+..++..+.  .+++|.++|+.|.++++|+|.|.
T Consensus        80 ~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~H~~~v~  135 (192)
T PF00117_consen   80 LGHQILAHALGGKVVPSPEKPHHGGNIPISETP--EDPLFYGLPESFKAYQYHSDAVN  135 (192)
T ss_dssp             HHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE--EHGGGTTSTSEEEEEEEECEEEE
T ss_pred             ehhhhhHHhcCCccccccccccccccccccccc--ccccccccccccccccccceeee
Confidence            999999999999999876445678876666543  36899999999999999999985

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.95  E-value=1.5e-27  Score=207.02  Aligned_cols=132  Identities=48%  Similarity=0.871  Sum_probs=113.8

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      ||+||||+|||++++.+.|++.|.+ +.+++++..+.+++...++|+|||+|||++|.+.+...++++.+..++|+||||
T Consensus         1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC   80 (534)
T PRK14607          1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC   80 (534)
T ss_pred             CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence            5999999999999999999999985 777766656677776668999999999999987766667777777789999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +|||+|+.++||+|.+.. ..++|+.+++...   ++++|+++|+.+.+++||++.|
T Consensus        81 lG~QlLa~a~Gg~V~~~~-~~~~G~~~~v~~~---~~~lf~~~~~~~~v~~~Hs~~v  133 (534)
T PRK14607         81 LGHQAIGYAFGGKIVHAK-RILHGKTSPIDHN---GKGLFRGIPNPTVATRYHSLVV  133 (534)
T ss_pred             HHHHHHHHHcCCeEecCC-ccccCCceeEEEC---CCcchhcCCCCcEEeeccchhe
Confidence            999999999999999987 4578887777654   4679999999999999999987

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.95  E-value=2.6e-27  Score=179.17  Aligned_cols=129  Identities=28%  Similarity=0.469  Sum_probs=105.1

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHHhCCCCCEEEEe
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~~~~~~PvLGIC  104 (163)
                      |+|||++++|+.++.++|+++|+++++++++. +.++....++||||++||+.++++..  .+.+.+  ++.++|+||||
T Consensus         1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC   77 (181)
T cd01742           1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEI--FELGVPVLGIC   77 (181)
T ss_pred             CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccccccccchhhHHH--HhcCCCEEEEc
Confidence            68999999999999999999999999998763 33333335899999999999877643  222222  24689999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+|+.++||+|.+.+ .+++|+. .+....  .+++|+++|+++.++++|+|.|.
T Consensus        78 ~G~Qll~~~~gg~v~~~~-~~~~G~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~  131 (181)
T cd01742          78 YGMQLIAKALGGKVERGD-KREYGKA-EIEIDD--SSPLFEGLPDEQTVWMSHGDEVV  131 (181)
T ss_pred             HHHHHHHHhcCCeEEeCC-CCcceEE-EEEecC--CChhhcCCCCceEEEcchhhhhh
Confidence            999999999999999987 4688997 555543  68899999999999999999873

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK00758 GMP synthase subunit A; Validated

Probab=99.95  E-value=5e-27  Score=178.49  Aligned_cols=127  Identities=27%  Similarity=0.403  Sum_probs=104.3

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCC-CEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~-dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      ||+|||++++|++++.++|+++|+++.+++++ .+.+++.  ++ |||||+||| +..+.....++++  +.++|+||||
T Consensus         1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC   74 (184)
T PRK00758          1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGP-DIERAGNCPEYLK--ELDVPILGIC   74 (184)
T ss_pred             CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCC-ChhhccccHHHHH--hCCCCEEEEe
Confidence            49999999999999999999999999999876 4556665  56 999999998 3333333445554  3579999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+|+.++||+|.+.+ .+++|+. .+.++.  .+++|.++|+.+.++++|+|.|+
T Consensus        75 ~G~Q~L~~a~Gg~v~~~~-~~~~g~~-~i~~~~--~~~l~~~~~~~~~~~~~H~~~v~  128 (184)
T PRK00758         75 LGHQLIAKAFGGEVGRGE-YGEYALV-EVEILD--EDDILKGLPPEIRVWASHADEVK  128 (184)
T ss_pred             HHHHHHHHhcCcEEecCC-CceeeeE-EEEEcC--CChhhhCCCCCcEEEeehhhhhh
Confidence            999999999999999987 5678986 666664  57899999999999999999873

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.95  E-value=6.3e-27  Score=210.93  Aligned_cols=133  Identities=35%  Similarity=0.573  Sum_probs=113.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCCCChh---HHHHHHHhC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELG   95 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~d~~~---~~~~i~~~~   95 (163)
                      ||||+|||||||++++++.|++. |.++.++++++.+.+++..     .+||+|||+|||++|....+   ..++++++ 
T Consensus        82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-  160 (918)
T PLN02889         82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-  160 (918)
T ss_pred             ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-
Confidence            68999999999999999999997 9999999988666766542     37999999999999864433   35666654 


Q ss_pred             CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC----ceEEeeeeeceec
Q 031223           96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK----YVSISCYNIQCFA  162 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~----~~~v~~~H~~~v~  162 (163)
                      .++||||||+|||+|+.++||+|.+.+ .++||....|.+.   ++.||+++|+    .|.|.+||+..|+
T Consensus       161 ~~iPILGICLGhQ~i~~~~Gg~V~~~~-~~~HG~~s~I~h~---~~~lF~glp~~~~~~f~v~RYHSL~v~  227 (918)
T PLN02889        161 RDIPILGVCLGHQALGYVHGARIVHAP-EPVHGRLSEIEHN---GCRLFDDIPSGRNSGFKVVRYHSLVID  227 (918)
T ss_pred             CCCcEEEEcHHHHHHHHhcCceEEeCC-CceeeeeeeEeec---CchhhcCCCcCCCCCceEEeCCCcccc
Confidence            469999999999999999999999998 5789998888765   4679999997    5999999998874

>PLN02347 GMP synthetase

Probab=99.95  E-value=1.7e-26  Score=199.96  Aligned_cols=132  Identities=19%  Similarity=0.303  Sum_probs=110.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHH-h-CCCCCE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLE-L-GPTVPL  100 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~-~-~~~~Pv  100 (163)
                      .+|+|||++++|++++.++++++|+.+++++++ .+.+++...++|||||||||.++++.+  .+.+.+.+ + +.++|+
T Consensus        11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI   89 (536)
T PLN02347         11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV   89 (536)
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence            479999999999999999999999999999987 567777656899999999999987643  23333333 2 468999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCc--eEEeeeeecee
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKY--VSISCYNIQCF  161 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~--~~v~~~H~~~v  161 (163)
                      ||||+|||+|+.++||+|.+.. .+++|+. .+.+..  +++||+++|+.  +.++++|+|.|
T Consensus        90 LGIClG~QlLa~alGG~V~~~~-~~e~G~~-~v~i~~--~~~Lf~~l~~~~~~~v~~~Hsd~V  148 (536)
T PLN02347         90 LGICYGMQLIVQKLGGEVKPGE-KQEYGRM-EIRVVC--GSQLFGDLPSGETQTVWMSHGDEA  148 (536)
T ss_pred             EEECHHHHHHHHHcCCEEEecC-CcccceE-EEEEcC--CChhhhcCCCCceEEEEEEEEEEe
Confidence            9999999999999999999987 5789997 566643  67899999976  89999999987

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.95  E-value=1.2e-26  Score=206.25  Aligned_cols=136  Identities=32%  Similarity=0.578  Sum_probs=113.1

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP   99 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~P   99 (163)
                      ++.+++|+|||++++|.+++.++|++.|+++.+++++. ..+.+...++|+|||+|||+++.+.+. .+++++ ++.++|
T Consensus       513 ~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iP  590 (717)
T TIGR01815       513 GGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLP  590 (717)
T ss_pred             CCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCC
Confidence            34668999999999999999999999999999998652 222233357999999999999987543 456666 478899


Q ss_pred             EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +||||+|||+|+.++||+|.+.+ .+++|+...+.++.  .+++|+++|+.+.|++||++.+
T Consensus       591 vLGICLG~QlLa~a~GG~V~~~~-~p~~G~~~~V~~~~--~~~Lf~~lp~~~~v~~~HS~~~  649 (717)
T TIGR01815       591 VFGVCLGLQGMVEAFGGALDVLP-EPVHGKASRIRVLG--PDALFAGLPERLTVGRYHSLFA  649 (717)
T ss_pred             EEEECHHHHHHhhhhCCEEEECC-CCeeCcceEEEECC--CChhhhcCCCCCEEEEECCCCc
Confidence            99999999999999999999998 47899766777654  5789999999999999999765

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK13566 anthranilate synthase; Provisional

Probab=99.94  E-value=2.6e-26  Score=204.37  Aligned_cols=137  Identities=34%  Similarity=0.555  Sum_probs=116.3

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCC
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV   98 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~   98 (163)
                      .++.+++|+||||+++|.+++.++|++.|+++++++++. +.+.+...++|+|||+|||+++.|.. ..+++++ +++++
T Consensus       522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~i  599 (720)
T PRK13566        522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARNL  599 (720)
T ss_pred             CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCCC
Confidence            455778999999999999999999999999999999863 33444445899999999999987654 4567776 47889


Q ss_pred             CEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      ||||||+|||+|+.++||+|.+.. .+++|+.++|.++.  +++||+++|++|.+++||++.+
T Consensus       600 PILGIClG~QlLa~alGG~V~~~~-~~~~G~~~~V~v~~--~~~Lf~~lp~~~~v~~~Hs~~v  659 (720)
T PRK13566        600 PIFGVCLGLQAIVEAFGGELGQLA-YPMHGKPSRIRVRG--PGRLFSGLPEEFTVGRYHSLFA  659 (720)
T ss_pred             cEEEEehhHHHHHHHcCCEEEECC-CCccCCceEEEECC--CCchhhcCCCCCEEEEecceeE
Confidence            999999999999999999999987 46788777888775  5689999999999999999865

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.94  E-value=3.4e-26  Score=197.66  Aligned_cols=132  Identities=24%  Similarity=0.464  Sum_probs=111.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh--HHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~--~~~~i~~~~~~~PvL  101 (163)
                      ..+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||.++++...  ..+.+  ++.++|+|
T Consensus         3 ~~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvL   79 (511)
T PRK00074          3 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVL   79 (511)
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEE
Confidence            3579999999999999999999999999999876 4567776557899999999998876532  22222  35689999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+|||+|+.++||+|.+.. .+++|+. .+.++.  +++||+++|+++.++++|+|.|.
T Consensus        80 GIC~G~QlLa~~lGG~V~~~~-~~e~G~~-~i~i~~--~~~Lf~~l~~~~~v~~~H~d~V~  136 (511)
T PRK00074         80 GICYGMQLMAHQLGGKVERAG-KREYGRA-ELEVDN--DSPLFKGLPEEQDVWMSHGDKVT  136 (511)
T ss_pred             EECHHHHHHHHHhCCeEEecC-CcccceE-EEEEcC--CChhhhcCCCceEEEEECCeEEE
Confidence            999999999999999999987 5789986 676654  57899999999999999999884

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.94  E-value=1e-25  Score=177.59  Aligned_cols=137  Identities=18%  Similarity=0.235  Sum_probs=107.7

Q ss_pred             CCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hC
Q 031223           24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LG   95 (163)
Q Consensus        24 ~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~   95 (163)
                      .++|+||+|... ..+.+.++|++.|..+++++++..........++|+|||+|||.++++..      ...++|++ ++
T Consensus         2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~   81 (234)
T PRK07053          2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA   81 (234)
T ss_pred             CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence            356999998655 57789999999999999998653221111224799999999999887642      24677777 46


Q ss_pred             CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceecC
Q 031223           96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFAH  163 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~~  163 (163)
                      .++|+||||+|+|+|+.++||+|.+.+ ++|.|+. +|.+++ +..++++ ++|.++.+++||+|++++
T Consensus        82 ~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~-~i~~t~~g~~~pl~-~~~~~~~~~~~H~d~~~l  147 (234)
T PRK07053         82 AGLPTLGICLGAQLIARALGARVYPGG-QKEIGWA-PLTLTDAGRASPLR-HLGAGTPVLHWHGDTFDL  147 (234)
T ss_pred             CCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEE-EEEEeccccCChhh-cCCCcceEEEEeCCEEec
Confidence            789999999999999999999999976 6899997 677654 3356664 688889999999999864

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.93  E-value=5.9e-25  Score=173.68  Aligned_cols=133  Identities=20%  Similarity=0.350  Sum_probs=103.8

Q ss_pred             CCCeEEEEECCC-ChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChh----HHHHHHH-h
Q 031223           23 NKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLE-L   94 (163)
Q Consensus        23 ~~~~Ilvid~~~-~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~----~~~~i~~-~   94 (163)
                      .+++|+||+|.+ ++..++.++|++.|.+++++++...  .++++  .+||++||+|||++++|...    +.++|++ +
T Consensus         6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l--~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~   83 (239)
T PRK06490          6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTL--EDHAGAVIFGGPMSANDPDDFIRREIDWISVPL   83 (239)
T ss_pred             CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcc--cccCEEEEECCCCCCCCCchHHHHHHHHHHHHH
Confidence            457899998876 5899999999999999999876421  11223  37999999999999887643    3567776 4


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCeeeeCCCcc-cccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV-MHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~-e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ++++|+||||+|||+||.++||+|.+.+.+. +.|+. .+.+++  ..+++.++|  ..+++||+|+++
T Consensus        84 ~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~-~i~~~~--~~~~~~~~~--~~~~~~H~d~~~  147 (239)
T PRK06490         84 KENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYY-PLRPTE--AGRALMHWP--EMVYHWHREGFD  147 (239)
T ss_pred             HCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceE-EeEECC--CcccccCCC--CEEEEECCcccc
Confidence            7889999999999999999999999986554 78986 677764  334555665  469999999754

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.93  E-value=8.7e-25  Score=172.36  Aligned_cols=135  Identities=20%  Similarity=0.242  Sum_probs=106.2

Q ss_pred             CeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCC----h-----hHHHHHH
Q 031223           25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS----G-----ISLQTVL   92 (163)
Q Consensus        25 ~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~----~-----~~~~~i~   92 (163)
                      |||+||.+..- -...+..++++.|+++.++.....  +.++  ..+||++||+|||+++.+.    +     ...++|+
T Consensus         1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g--~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~   78 (235)
T PRK08250          1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAG--EALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN   78 (235)
T ss_pred             CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCC--CCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence            58999987543 366788999999999988765421  1221  2479999999999886531    1     2356777


Q ss_pred             Hh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceecC
Q 031223           93 EL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFAH  163 (163)
Q Consensus        93 ~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~~  163 (163)
                      ++ ++++|+||||+|+|+|+.++||+|.+.+ .+|+|+. ++.+++ +..+++|+++|+++.+++||+|.+++
T Consensus        79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~-~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~l  149 (235)
T PRK08250         79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSP-EKEIGYF-PITLTEAGLKDPLLSHFGSTLTVGHWHNDMPGL  149 (235)
T ss_pred             HHHHcCCCEEEEChhHHHHHHHhCceeccCC-CCceeEE-EEEEccccccCchhhcCCCCcEEEEEecceecC
Confidence            74 7889999999999999999999999988 4789997 777764 44688999999999999999998753

>PRK05665 amidotransferase; Provisional

Probab=99.92  E-value=2e-24  Score=170.69  Aligned_cols=135  Identities=14%  Similarity=0.135  Sum_probs=100.1

Q ss_pred             CCeEEEEECCC----------ChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh----H
Q 031223           24 KNPIIVIDNYD----------SFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----S   87 (163)
Q Consensus        24 ~~~Ilvid~~~----------~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~----~   87 (163)
                      .|||+|+..+.          +|...+.+.|.+.+.  ++.++......... ...+|||+||+||+.++++...    +
T Consensus         2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~l   80 (240)
T PRK05665          2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQTL   80 (240)
T ss_pred             ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHHH
Confidence            45799995543          344446667777664  45555432211111 1247999999999999886533    4


Q ss_pred             HHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        88 ~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      .++|++ +++++|+||||+|||+||.|+||+|.+.+.+++.|+. .+.+++  .+++|+.+++++.+++||+|+|.
T Consensus        81 ~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~-~~~~~~--~~~~~~~~~~~~~~~~~H~D~V~  153 (240)
T PRK05665         81 KTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIH-RYQLAA--HAPWMSPAVTELTLLISHQDQVT  153 (240)
T ss_pred             HHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceE-EEEecC--CCccccCCCCceEEEEEcCCeee
Confidence            667777 4778999999999999999999999998767788886 566664  46799999999999999999974

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.92  E-value=4.4e-24  Score=191.01  Aligned_cols=136  Identities=26%  Similarity=0.493  Sum_probs=105.5

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHc-C--CEEEEEeCCCCCHHHHh-ccCCCEEEeCCCCCCCCCChh--HHHHHHHh-
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGEL-G--YHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL-   94 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~-G--~~~~v~~~~~~~~~~~~-~~~~dgvvl~GG~~~~~d~~~--~~~~i~~~-   94 (163)
                      +..+|||+|||+|||++++++.|++. |  +.+.+++++....+.+. ..+||+|||+|||+++.+...  +...+.+. 
T Consensus         3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~   82 (742)
T TIGR01823         3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELA   82 (742)
T ss_pred             CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhc
Confidence            44579999999999999999999986 3  56788887643322222 237999999999999875433  22222222 


Q ss_pred             -CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           95 -GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                       ..++|+||||+|||+|+.++||+|.+.+ .++||+.+.+.+.   .+++|.+++. +.+++||++.|.
T Consensus        83 ~~~~iPvLGIClG~QlLa~a~GG~v~~~~-~~~hG~~~~v~~~---~~~lf~gl~~-~~v~~~Hs~~v~  146 (742)
T TIGR01823        83 NLDEVPVLGICLGFQSLCLAQGADISRLP-TPKHGQVYEMHTN---DAAIFCGLFS-VKSTRYHSLYAN  146 (742)
T ss_pred             ccCCCcEEEEchhhHHHHhhcCCEEEECC-CCCcCeEEEEEEC---CccccCCCCC-CceeEEEEEEcc
Confidence             2469999999999999999999999998 4689987777765   4679999986 999999999873

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.92  E-value=1.8e-24  Score=170.75  Aligned_cols=126  Identities=22%  Similarity=0.289  Sum_probs=98.4

Q ss_pred             CCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHH-hCCCCCEEEEehH
Q 031223           33 YDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMG  106 (163)
Q Consensus        33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~-~~~~~PvLGIC~G  106 (163)
                      ++.|...+.+.+...|.++++++.... .++++  .+||||||+|||.++++..    .+.++|++ ++.++|+||||+|
T Consensus        20 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G   97 (237)
T PRK09065         20 YGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAP--DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYG   97 (237)
T ss_pred             cCCHHHHHHHHhccCCceEEEEeccCCCCCCCh--hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChh
Confidence            344566667777778899888876532 12222  3799999999999887653    24667777 4678999999999


Q ss_pred             HHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeecee
Q 031223          107 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       107 ~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      ||+|+.++||+|.+.+.+++.|+. .|++++ +..+++|+++|+.|.+++||+|.|
T Consensus        98 ~Qlla~alGg~V~~~~~g~e~G~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v  152 (237)
T PRK09065         98 HQLLAHALGGEVGYNPAGRESGTV-TVELHPAAADDPLFAGLPAQFPAHLTHLQSV  152 (237)
T ss_pred             HHHHHHHcCCccccCCCCCccceE-EEEEccccccChhhhcCCccCcEeeehhhhh
Confidence            999999999999988656788986 676654 335789999999999999999986

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.91  E-value=5.4e-24  Score=168.50  Aligned_cols=134  Identities=19%  Similarity=0.293  Sum_probs=99.5

Q ss_pred             EEEEECCCChH---HHHHHHHHHcCCE---EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hh---HH----
Q 031223           27 IIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GI---SL----   88 (163)
Q Consensus        27 Ilvid~~~~~~---~~~~~~l~~~G~~---~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~---~~----   88 (163)
                      |+|++++....   ..+.+++++.|..   +.+++.+.......+..+||||||+||+++++|.     +.   +.    
T Consensus         4 ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~   83 (242)
T PRK07567          4 FLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELS   83 (242)
T ss_pred             EEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHH
Confidence            89998876533   5688888888765   5555544221111122479999999999998875     11   12    


Q ss_pred             HHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223           89 QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        89 ~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ++++. +++++|+||||+|||+||.++||+|.+.. +++.|+. .+.+++ +..+++|.++|..|.+++||+|.|.
T Consensus        84 ~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~-g~e~G~~-~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~  157 (242)
T PRK07567         84 GLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTY-GEPVGAV-TVSLTDAGRADPLLAGLPDTFTAFVGHKEAVS  157 (242)
T ss_pred             HHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCC-CCcCccE-EEEECCccCCChhhcCCCCceEEEeehhhhhh
Confidence            23333 26889999999999999999999999844 6788986 777764 3357899999999999999999873

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.91  E-value=1.6e-23  Score=158.70  Aligned_cols=122  Identities=25%  Similarity=0.390  Sum_probs=96.2

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEeh
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM  105 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~  105 (163)
                      |+|||+++++  ++.++|++.|+.+++++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||||+
T Consensus         1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~   77 (178)
T cd01744           1 VVVIDFGVKH--NILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL   77 (178)
T ss_pred             CEEEecCcHH--HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence            6899998765  7899999999999999987 345555445899999999998887766666778874 67899999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |+|+|+.++||+|.+.+. ..+|..+++....  .       ...+.+++||+++|
T Consensus        78 G~Q~l~~~~Gg~v~~~~~-~~~g~~~~v~~~~--~-------~~~~~v~~~H~~~v  123 (178)
T cd01744          78 GHQLLALALGAKTYKMKF-GHRGSNHPVKDLI--T-------GRVYITSQNHGYAV  123 (178)
T ss_pred             HHHHHHHHcCCceecCCC-CCCCCceeeEEcC--C-------CCcEEEEcCceEEE
Confidence            999999999999998763 3456666665432  1       13456888999887

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.90  E-value=1.8e-23  Score=170.24  Aligned_cols=141  Identities=26%  Similarity=0.436  Sum_probs=111.3

Q ss_pred             CCChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh
Q 031223            6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG   85 (163)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~   85 (163)
                      +.+..|.. .+..  -....+|++||+  +..+++.|.|.+.|+.+.++|++ .+.+++.+.+||||+||-||++|...+
T Consensus       164 ~~~~~~~~-~~~~--~~~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~  237 (368)
T COG0505         164 KEPYTWPG-LNGG--GEPGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLD  237 (368)
T ss_pred             CCceeccc-cccC--CCCCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHH
Confidence            44445555 2211  334578999999  57889999999999999999987 678888778999999999999998777


Q ss_pred             hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ...+.++++ ...+|+||||+|||+||.|+||+..+++.+ ++|.+|+++-..       .+  .-....+.|+++|+
T Consensus       238 ~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFG-HrG~NhPV~dl~-------tg--rv~ITSQNHGyaVd  305 (368)
T COG0505         238 YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFG-HRGANHPVKDLD-------TG--RVYITSQNHGYAVD  305 (368)
T ss_pred             HHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccC-CCCCCcCccccc-------CC--eEEEEecCCceecC
Confidence            778888985 666799999999999999999999999976 578888876211       11  23456677887775

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.90  E-value=2.8e-23  Score=174.01  Aligned_cols=124  Identities=29%  Similarity=0.468  Sum_probs=100.1

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      .+|+++|+  +..+++.++|+++|+.++++|++ .+.+++.+.++|||||||||++|.+.....+.++++..++|+||||
T Consensus       241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC  317 (415)
T PLN02771        241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC  317 (415)
T ss_pred             CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence            58999998  46899999999999999999987 4667776668999999999999987766677777754579999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +|||+||.|+||++.+++.+ ++|.++++....  ...       -..+.++|+++|
T Consensus       318 LGhQlLa~AlGGkv~K~~~G-h~G~n~pV~~~~--~~~-------v~itsqnHg~aV  364 (415)
T PLN02771        318 MGHQLLGQALGGKTFKMKFG-HHGGNHPVRNNR--TGR-------VEISAQNHNYAV  364 (415)
T ss_pred             HHHHHHHHhcCCeEEECCCC-cccceEEEEECC--CCC-------EEEEecCHHHhh
Confidence            99999999999999999854 578888876432  111       124567777766

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.90  E-value=1.9e-23  Score=160.47  Aligned_cols=126  Identities=21%  Similarity=0.283  Sum_probs=100.9

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHHh-CCCCC
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPTVP   99 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~~-~~~~P   99 (163)
                      |+|||++.++.+.+.++|+++|+++++++..    +++.  ++|+|||+|| +.+.+.      ....++++++ ++++|
T Consensus         1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p   73 (198)
T cd01748           1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP   73 (198)
T ss_pred             CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence            6899999999999999999999999998742    3444  7999999665 433221      1245677774 68899


Q ss_pred             EEEEehHHHHHHHH------------hCCeeeeCCCc-----ccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEA------------FGGKIVRSPLG-----VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~~~~-----~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|+|+|+.+            +||+|.+.+.+     +++|+. .+...+  ++++|+++|+.+.+++||+++|+
T Consensus        74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~-~v~~~~--~~~lf~~l~~~~~v~~~Hs~~v~  150 (198)
T cd01748          74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWN-QLEITK--ESPLFKGIPDGSYFYFVHSYYAP  150 (198)
T ss_pred             EEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccc-eEEECC--CChhhhCCCCCCeEEEEeEEEEe
Confidence            99999999999998            88999987531     478997 566554  67899999999999999999984

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.90  E-value=3.2e-23  Score=159.34  Aligned_cols=126  Identities=19%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh------HHHHHHHhCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV   98 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~------~~~~i~~~~~~~   98 (163)
                      |||+|||++.++..++.++|++.|+++++++.    .+++.  ++|+||| +|++++.+...      +.+.+++  .++
T Consensus         1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~--~~~   71 (196)
T PRK13170          1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKA--CTQ   71 (196)
T ss_pred             CeEEEEeCCCchHHHHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHH--cCC
Confidence            68999999999999999999999999998863    34554  6899999 55565543321      2334443  469


Q ss_pred             CEEEEehHHHHHHHHhC------------CeeeeCC----CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           99 PLFGVCMGLQCIGEAFG------------GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~G------------g~v~~~~----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |+||||+|||+|+.+++            |+|.+.+    ..++.||. .|...+  ++++|+++|+.+.+++||++.++
T Consensus        72 PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~-~v~~~~--~~~l~~~l~~~~~v~~~Hs~~lp  148 (196)
T PRK13170         72 PVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWN-QVTPQA--GHPLFQGIEDGSYFYFVHSYAMP  148 (196)
T ss_pred             CEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccc-eeEeCC--CChhhhCCCcCCEEEEECeeecC
Confidence            99999999999999972            4666642    13678996 676654  67899999999999999999763

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.90  E-value=4.6e-23  Score=159.91  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=99.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHh-C
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-G   95 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~-~   95 (163)
                      |||+|||++.++.+++.++|++.|+  ++.+++    +.+++.  ++|+|||+|+.....+..      ....+++.. +
T Consensus         2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~   75 (209)
T PRK13146          2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLA   75 (209)
T ss_pred             CeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHh
Confidence            6899999999999999999999998  555543    345664  899999988643222211      123344443 5


Q ss_pred             CCCCEEEEehHHHHHHHH------------hCCeeeeC-C-----CcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223           96 PTVPLFGVCMGLQCIGEA------------FGGKIVRS-P-----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN  157 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a------------~Gg~v~~~-~-----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H  157 (163)
                      +++|+||||+|||+|+.+            ++|+|.+. +     ..+++||. .++..+  +++||+++|+.+.+++||
T Consensus        76 ~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~-~v~~~~--~~~lf~~~~~~~~v~~~H  152 (209)
T PRK13146         76 AGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWN-TVDQTR--DHPLFAGIPDGARFYFVH  152 (209)
T ss_pred             CCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChH-HeeeCC--CChhccCCCCCCEEEEEe
Confidence            889999999999999999            89999986 1     13578997 666654  689999999999999999


Q ss_pred             eceec
Q 031223          158 IQCFA  162 (163)
Q Consensus       158 ~~~v~  162 (163)
                      +|+|.
T Consensus       153 s~~v~  157 (209)
T PRK13146        153 SYYAQ  157 (209)
T ss_pred             EEEEE
Confidence            99984

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.89  E-value=2.2e-22  Score=167.10  Aligned_cols=126  Identities=29%  Similarity=0.427  Sum_probs=101.1

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (163)
                      +.+|++||++  ...++.++|++.|+.+.+++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||
T Consensus       177 ~~~I~viD~G--~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG  253 (360)
T PRK12564        177 KYKVVAIDFG--VKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG  253 (360)
T ss_pred             CCEEEEEeCC--cHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence            4689999995  6788999999999999999987 456677555799999999999887655566777774 57899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||+|||+|+.++||++.+++.+ .+|..+++.....         +..+.+.++|+++|+
T Consensus       254 IClG~QlLa~a~Gg~v~kl~~g-h~G~~~pv~~~~~---------~~~~its~~H~~~V~  303 (360)
T PRK12564        254 ICLGHQLLALALGAKTYKMKFG-HRGANHPVKDLET---------GKVEITSQNHGFAVD  303 (360)
T ss_pred             ECHHHHHHHHHhCCcEeccCCC-ccCCceeeEECCC---------CcEEEEecCcccEEc
Confidence            9999999999999999998743 5687777765421         123567788888873

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.89  E-value=2.2e-22  Score=166.66  Aligned_cols=124  Identities=25%  Similarity=0.430  Sum_probs=99.2

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (163)
                      +.+|++||+  ++..++.++|++.|+.+++++++ .+.+++...++|||||+|||++|.+.....+.++++ ++ +|+||
T Consensus       167 ~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlG  242 (354)
T PRK12838        167 GKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILG  242 (354)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEE
Confidence            578999999  58999999999999999999986 456666556899999999999987766666777775 44 99999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      ||+|||+|+.|+||++.+.+.+ ++|..+++....  .+.       .+.+.++|+++|
T Consensus       243 IClG~QlLa~a~Gg~v~kl~~g-h~G~~hpV~~~~--~~~-------~~~ts~~H~~aV  291 (354)
T PRK12838        243 ICLGHQLIALALGADTEKLPFG-HRGANHPVIDLT--TGR-------VWMTSQNHGYVV  291 (354)
T ss_pred             ECHHHHHHHHHhCCEEecCCCC-ccCCceEEEECC--CCe-------EEEeccchheEe
Confidence            9999999999999999998744 578888887643  111       234556777766

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.89  E-value=4e-22  Score=151.71  Aligned_cols=135  Identities=22%  Similarity=0.311  Sum_probs=103.9

Q ss_pred             eEEEEECCCCh-HHHHHHHHHHcC---CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CCC----hhHHHHHHH-hC
Q 031223           26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDS----GISLQTVLE-LG   95 (163)
Q Consensus        26 ~Ilvid~~~~~-~~~~~~~l~~~G---~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d~----~~~~~~i~~-~~   95 (163)
                      ||+|+++.... ...+.++|+++|   ++++++++..... .....++|||||+||+.++ .+.    ....+++++ .+
T Consensus         1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~   79 (188)
T cd01741           1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA   79 (188)
T ss_pred             CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH
Confidence            58888775443 567889999998   6888888753222 1122489999999999887 332    224666776 47


Q ss_pred             CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223           96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +++|++|||+|+|+|+.++||+|.+.+.+++.|+. .+.+++ +..+++|+++|+.+.++++|++.|.
T Consensus        80 ~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~  146 (188)
T cd01741          80 AGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWF-PVTLTEAGKADPLFAGLPDEFPVFHWHGDTVV  146 (188)
T ss_pred             CCCCEEEECccHHHHHHHhCCEEecCCCcceeEEE-EEEeccccccCchhhcCCCcceEEEEeccChh
Confidence            88999999999999999999999998866677885 677664 2356789999999999999999885

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.89  E-value=2.6e-22  Score=166.45  Aligned_cols=125  Identities=27%  Similarity=0.440  Sum_probs=97.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      .+|++||+  +...++.++|+++|+.+++++++ .+.+++....+|||||+|||+++.+.....++++++-+++|+||||
T Consensus       174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC  250 (358)
T TIGR01368       174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC  250 (358)
T ss_pred             cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence            58999999  56789999999999999999987 4566765556899999999998876655667777753389999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+|+.|+||++.+++.+ .+|..+++....  ..       .-+.+.++|+++|+
T Consensus       251 lG~QlLa~a~Gg~v~kl~~g-h~G~nhpV~~~~--~~-------~v~itsqnH~~aV~  298 (358)
T TIGR01368       251 LGHQLLALAFGAKTYKMKFG-HRGGNHPVKDLI--TG-------RVEITSQNHGYAVD  298 (358)
T ss_pred             HHHHHHHHHhCCceeccCcC-cCCCceeeEECC--CC-------cEEEeecCCCcEEc
Confidence            99999999999999998753 578877776432  11       12344566777663

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.88  E-value=1.8e-22  Score=155.27  Aligned_cols=127  Identities=20%  Similarity=0.207  Sum_probs=99.4

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV   98 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~   98 (163)
                      ||+|||++.++..++.++|+++|++++++..    .+++.  ++|+||++|| +++...      ..+.+.+++ .++++
T Consensus         1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~   73 (199)
T PRK13181          1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQ   73 (199)
T ss_pred             CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCC
Confidence            4999999999999999999999999988742    34554  7999998665 433211      113455665 46889


Q ss_pred             CEEEEehHHHHHHHH-----------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           99 PLFGVCMGLQCIGEA-----------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        99 PvLGIC~G~QlLa~a-----------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |+||||+|+|+|+.+           +|++|.+.+.    .+++||. .++...  +++||+++|+.+.+++||++.+.
T Consensus        74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~-~v~~~~--~~~lf~~l~~~~~~~~~Hs~~v~  149 (199)
T PRK13181         74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWN-SVKPLK--ESPLFKGIEEGSYFYFVHSYYVP  149 (199)
T ss_pred             CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCcc-ccccCC--CChhHcCCCCCCEEEEeCeeEec
Confidence            999999999999999           7899998652    2578996 565543  68999999999999999999873

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.88  E-value=9.1e-22  Score=164.15  Aligned_cols=106  Identities=29%  Similarity=0.532  Sum_probs=87.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (163)
                      +++|++||+  ++..++.++|+++|+++.+++++ .+.+++...++|||||+|||+++.+.....+.++++ +.++|+||
T Consensus       192 ~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilG  268 (382)
T CHL00197        192 QLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFG  268 (382)
T ss_pred             CCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence            578999999  68889999999999999999886 566777666899999999999987665556666664 56899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEE
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV  133 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i  133 (163)
                      ||+|||+|+.++||++.+++.+ +.|..+++
T Consensus       269 IClGhQlLa~a~Gg~v~k~~~G-h~g~n~pv  298 (382)
T CHL00197        269 ICMGHQILSLALEAKTFKLKFG-HRGLNHPS  298 (382)
T ss_pred             EcHHHHHHHHHhCCEEeccCCC-CCCCCEec
Confidence            9999999999999999998744 34544443

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=1e-21  Score=151.46  Aligned_cols=127  Identities=18%  Similarity=0.264  Sum_probs=96.8

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh------HHHHHHH--hCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPT   97 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~------~~~~i~~--~~~~   97 (163)
                      ||+|||++.++.+++.++|++.|+++.+++.    .+++.  ++|+||| +|++++.+...      +.+.+++  ++++
T Consensus         1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~   73 (201)
T PRK13152          1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQK   73 (201)
T ss_pred             CEEEEECCCCcHHHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCC
Confidence            3899999999999999999999999888764    34554  6999999 55566544311      2344444  3678


Q ss_pred             CCEEEEehHHHHHHHH------------hCCeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeeece
Q 031223           98 VPLFGVCMGLQCIGEA------------FGGKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQC  160 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a------------~Gg~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~  160 (163)
                      +|+||||+|||+|+.+            ++|+|.+...     .++.||. .+.+..  +++||+++|+++.+++||++.
T Consensus        74 ~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~-~v~~~~--~~~l~~~l~~~~~~~~vHS~~  150 (201)
T PRK13152         74 KPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWN-ELEILK--QSPLYQGIPEKSDFYFVHSFY  150 (201)
T ss_pred             CcEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeE-EEEECC--CChhhhCCCCCCeEEEEcccE
Confidence            9999999999999997            1277876431     1356775 677654  688999999999999999998


Q ss_pred             ec
Q 031223          161 FA  162 (163)
Q Consensus       161 v~  162 (163)
                      +.
T Consensus       151 v~  152 (201)
T PRK13152        151 VK  152 (201)
T ss_pred             ee
Confidence            74

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.87  E-value=8.3e-22  Score=153.01  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=97.8

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~   97 (163)
                      ++|.|||.+.++..++.++|+.+|+++.+++.+    +++.  ++|+||+ ||++++....      .+.+.+++ ++++
T Consensus         2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~   74 (210)
T CHL00188          2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEG   74 (210)
T ss_pred             cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcC
Confidence            479999999899999999999999999988642    4453  6899887 5556654221      12344555 4678


Q ss_pred             CCEEEEehHHHHHHHH-----------hCCeeeeCC-----CcccccceeEEEeCCCC----cCccccCCCCceEEeeee
Q 031223           98 VPLFGVCMGLQCIGEA-----------FGGKIVRSP-----LGVMHGKSSLVYYDEKG----EDGLLAGLSKYVSISCYN  157 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a-----------~Gg~v~~~~-----~~~e~G~~~~i~~~~~~----~~~lf~~lp~~~~v~~~H  157 (163)
                      +|+||||+|||+|+..           ++|+|.+.+     .-|++||. .+..+...    +++||+++|+.+.+++||
T Consensus        75 ~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~-~v~~~~~~~~~~~~~lf~~l~~~~~v~~~H  153 (210)
T CHL00188         75 NPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWN-RLECQNSECQNSEWVNWKAWPLNPWAYFVH  153 (210)
T ss_pred             CCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCc-cceecCCcccccCChhhcCCCCCCEEEEeC
Confidence            9999999999999987           467777763     13678997 56655311    156999999999999999


Q ss_pred             ecee
Q 031223          158 IQCF  161 (163)
Q Consensus       158 ~~~v  161 (163)
                      ++.|
T Consensus       154 S~~v  157 (210)
T CHL00188        154 SYGV  157 (210)
T ss_pred             ccEe
Confidence            9987

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.87  E-value=6.6e-22  Score=151.97  Aligned_cols=126  Identities=18%  Similarity=0.157  Sum_probs=97.7

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-h---h--HHHHHHH-hCCCCC
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-G---I--SLQTVLE-LGPTVP   99 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~---~--~~~~i~~-~~~~~P   99 (163)
                      |+|||++.++...+.++|+..|+++++++.+    ++++  ++|+||++|+ +++.+. +   .  ...++++ ++.++|
T Consensus         1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~p   73 (196)
T TIGR01855         1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKP   73 (196)
T ss_pred             CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence            6899999999999999999999999999743    3443  7999999663 443221 1   1  2334354 478899


Q ss_pred             EEEEehHHHHHHHH------------hCCeeeeCC--CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEA------------FGGKIVRSP--LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~~--~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|+|+|+.+            +||+|.+.+  ..+++||. .+....  +++||+++|+++.+++||+++|+
T Consensus        74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~-~~~~~~--~~~l~~~l~~~~~v~~~Hs~~v~  147 (196)
T TIGR01855        74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWN-EVHPVK--ESPLLNGIDEGAYFYFVHSYYAV  147 (196)
T ss_pred             EEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCe-eeeeCC--CChHHhCCCCCCEEEEECeeEec
Confidence            99999999999999            789998874  13578886 455443  67899999999999999999985

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.9e-21  Score=148.00  Aligned_cols=128  Identities=22%  Similarity=0.299  Sum_probs=100.4

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~   97 (163)
                      ++|+|||.+.++.+++.++|++.|+++.+..    +.+++.  +.|+||+ +|.++..+..      .+.+.|++ ...+
T Consensus         2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~----d~~~i~--~AD~liL-PGVGaf~~am~~L~~~gl~~~i~~~~~~~   74 (204)
T COG0118           2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSR----DPEEIL--KADKLIL-PGVGAFGAAMANLRERGLIEAIKEAVESG   74 (204)
T ss_pred             CEEEEEEcCcchHHHHHHHHHHcCCeeEEec----CHHHHh--hCCEEEe-cCCCCHHHHHHHHHhcchHHHHHHHHhcC
Confidence            6799999999999999999999999998874    256665  7999999 6666654432      24566666 4677


Q ss_pred             CCEEEEehHHHHHHHH------------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           98 VPLFGVCMGLQCIGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a------------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +|+||||+|||+|...            +.|+|.+.+.    -|+.||+ .+...+  +++||+++++.-++|+.|||.+
T Consensus        75 kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN-~l~~~~--~~~l~~gi~~~~~~YFVHSY~~  151 (204)
T COG0118          75 KPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWN-QVEFVR--GHPLFKGIPDGAYFYFVHSYYV  151 (204)
T ss_pred             CCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccc-eeeccC--CChhhcCCCCCCEEEEEEEEee
Confidence            9999999999999875            2367877653    2578998 455443  7899999998789999999987


Q ss_pred             c
Q 031223          162 A  162 (163)
Q Consensus       162 ~  162 (163)
                      .
T Consensus       152 ~  152 (204)
T COG0118         152 P  152 (204)
T ss_pred             c
Confidence            5

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.87  E-value=3.6e-22  Score=166.07  Aligned_cols=137  Identities=23%  Similarity=0.383  Sum_probs=114.9

Q ss_pred             hcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--hhHHHHHHHhCC
Q 031223           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--GISLQTVLELGP   96 (163)
Q Consensus        19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~--~~~~~~i~~~~~   96 (163)
                      ....+..+|+|+|++.+|.+.+.|++|++.+..+++|.+ .+...+....|.||||||||.+++++  +.+...+.++. 
T Consensus        11 ~~~~~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~-   88 (552)
T KOG1622|consen   11 EVSSYFDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG-   88 (552)
T ss_pred             cccccCceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC-
Confidence            344566789999999999999999999999999999976 45667766789999999999998865  45677777766 


Q ss_pred             CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCce--EEeeeeeceec
Q 031223           97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYV--SISCYNIQCFA  162 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~--~v~~~H~~~v~  162 (163)
                       +|+||||+|||+|+..+||.|.+.. ..|.|.. .|...+  ..+||+++-.+.  .|+..|+|.+.
T Consensus        89 -vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~-eI~v~~--~~~lF~~~~~~~~~~VlltHgdsl~  151 (552)
T KOG1622|consen   89 -VPVLGICYGMQLINKLNGGTVVKGM-VREDGED-EIEVDD--SVDLFSGLHKTEFMTVLLTHGDSLS  151 (552)
T ss_pred             -CcceeehhHHHHHHHHhCCcccccc-ccCCCCc-eEEcCc--hhhhhhhhcccceeeeeeccccchh
Confidence             9999999999999999999999987 5688986 777765  567999886554  49999999863

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.86  E-value=2.2e-21  Score=149.81  Aligned_cols=127  Identities=22%  Similarity=0.270  Sum_probs=99.6

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV   98 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~   98 (163)
                      +|+|||++.++..++.++|++.|+++++++.    .+++.  ++|+|||+|| +.+.+.      ....+++++ .++++
T Consensus         1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~   73 (205)
T PRK13141          1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGK   73 (205)
T ss_pred             CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCC
Confidence            5899999999999999999999999999753    34554  7999999775 322221      124566776 46889


Q ss_pred             CEEEEehHHHHHHHH------------hCCeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           99 PLFGVCMGLQCIGEA------------FGGKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        99 PvLGIC~G~QlLa~a------------~Gg~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |+||||+|+|+|+.+            +||++.+.+.     .++.|+. .+.+++  +++||+++|+.+.++.+|++.+
T Consensus        74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~-~i~~~~--~~~l~~~l~~~~~v~~~Hs~~v  150 (205)
T PRK13141         74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWN-QLELKK--ESPLLKGIPDGAYVYFVHSYYA  150 (205)
T ss_pred             cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCc-cceeCC--CChhhhCCCCCCEEEEECeeEe
Confidence            999999999999997            6789987641     2356775 566654  6899999999999999999987


Q ss_pred             c
Q 031223          162 A  162 (163)
Q Consensus       162 ~  162 (163)
                      .
T Consensus       151 ~  151 (205)
T PRK13141        151 D  151 (205)
T ss_pred             c
Confidence            3

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.85  E-value=1.7e-20  Score=145.66  Aligned_cols=127  Identities=18%  Similarity=0.182  Sum_probs=96.4

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHH-hCCCCC
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP   99 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~-~~~~~P   99 (163)
                      |+|||++.++..++.++++..+.++..++    +.+++.  ++|+||++|+ +++.+..      .+.+.+++ +.+++|
T Consensus         2 i~iidyg~gNl~s~~~al~~~~~~~~~~~----~~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~p   74 (210)
T PRK14004          2 IAILDYGMGNIHSCLKAVSLYTKDFVFTS----DPETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKP   74 (210)
T ss_pred             EEEEECCCchHHHHHHHHHHcCCeEEEEC----CHHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence            89999999999999999999998887664    245664  7999998666 5443221      23455555 578899


Q ss_pred             EEEEehHHHHHHHHhC------------------CeeeeCC----CcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223          100 LFGVCMGLQCIGEAFG------------------GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN  157 (163)
Q Consensus       100 vLGIC~G~QlLa~a~G------------------g~v~~~~----~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H  157 (163)
                      +||||+|||+|+.+++                  |+|.+.+    .-++.||. .+..++..++++|+++|+.+++++||
T Consensus        75 ilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~-~v~~~~~~~~~lf~~l~~~~~v~~~H  153 (210)
T PRK14004         75 LFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWN-RLQIRRKDKSKLLKGIGDQSFFYFIH  153 (210)
T ss_pred             EEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcc-cceeccCCCCccccCCCCCCEEEEec
Confidence            9999999999999764                  6666542    13678998 56554323678999999999999999


Q ss_pred             ecee
Q 031223          158 IQCF  161 (163)
Q Consensus       158 ~~~v  161 (163)
                      +|.+
T Consensus       154 S~~~  157 (210)
T PRK14004        154 SYRP  157 (210)
T ss_pred             eeec
Confidence            9865

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.84  E-value=2.3e-20  Score=143.82  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=96.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P   99 (163)
                      |||+|||+++++...+.++|+++|+++++++.    .++++  ++|++||+|| +.+.+.    ....+.++++ ++++|
T Consensus         1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~P   73 (200)
T PRK13143          1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKP   73 (200)
T ss_pred             CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999988853    34444  7999999775 322221    1246667764 78899


Q ss_pred             EEEEehHHHHHHHH------------hCCeeeeCCC---cccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEA------------FGGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a------------~Gg~v~~~~~---~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|+|+|+.+            +||++.+.+.   ..+.|+. .+....  ++++|++++ .+.+++||++.+.
T Consensus        74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~-~v~~~~--~~~l~~~l~-~~~~~~~Hs~~~~  147 (200)
T PRK13143         74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWN-TVKVVK--DCPLFEGID-GEYVYFVHSYYAY  147 (200)
T ss_pred             EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecce-EEEEcC--CChhhccCC-CcEEEEEeeeeeC
Confidence            99999999999986            6888887642   1345786 566653  688999995 4568899999874

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.83  E-value=1.2e-19  Score=138.76  Aligned_cols=123  Identities=17%  Similarity=0.256  Sum_probs=91.1

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P   99 (163)
                      |+|.|+++.+.+... .++|+..|+++..++.    .+++.  ++|+|||+||+.+..+.    ..+.++++++ ++++|
T Consensus         2 m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~P   74 (189)
T PRK13525          2 MKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLP   74 (189)
T ss_pred             CEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCe
Confidence            579999987666655 5779999999888863    24443  79999999998765432    1235677774 78899


Q ss_pred             EEEEehHHHHHHHHhCC-----------eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEAFGG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg-----------~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|+|+|+.++||           ++.+.+.+++.|..     .   .+++|+++++++.+++||+|.|.
T Consensus        75 ilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~-----~---~~~~~~~~~~~~~~~~~H~d~v~  140 (189)
T PRK13525         75 VFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF-----E---AELDIKGLGEPFPAVFIRAPYIE  140 (189)
T ss_pred             EEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE-----E---ecccccCCCCCeEEEEEeCceee
Confidence            99999999999999998           45544433333321     1   35678888889999999999883

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.82  E-value=9.6e-20  Score=140.29  Aligned_cols=131  Identities=17%  Similarity=0.234  Sum_probs=94.3

Q ss_pred             eEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHH-hCCCCC
Q 031223           26 PIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVP   99 (163)
Q Consensus        26 ~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~-~~~~~P   99 (163)
                      -|+++++... +...+.++|++.|.+++++..+  +.+++.  ++|+|||+||+.++.+.    ..+.++|++ +++++|
T Consensus         4 ~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~--~~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p   79 (200)
T PRK13527          4 GVLALQGDVEEHIDALKRALDELGIDGEVVEVR--RPGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLP   79 (200)
T ss_pred             EEEEECCccHHHHHHHHHHHHhcCCCeEEEEeC--ChHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCe
Confidence            4566665322 4557889999999988888764  234444  79999999998765321    124677777 468899


Q ss_pred             EEEEehHHHHHHHHhCCe-eeeCCCcccccceeEEEeCC---C------CcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEAFGGK-IVRSPLGVMHGKSSLVYYDE---K------GEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~-v~~~~~~~e~G~~~~i~~~~---~------~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|+|+|+.++||+ +...+ .+++|+. +++++.   +      ..+++|.++|+++.++++|++.|+
T Consensus        80 ilGIC~G~Qll~~~~gg~~v~~~~-~~~lG~~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~  150 (200)
T PRK13527         80 ILGTCAGLILLAKEVGDDRVTKTE-QPLLGLM-DVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAIT  150 (200)
T ss_pred             EEEECHHHHHHHhhhcCCccCCCC-Cceeeee-EEEEeeccccCccccEEEeEeccccCCcceEEEEcccccc
Confidence            999999999999999984 44444 5678886 443321   1      124678889999999999999874

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.4e-18  Score=147.30  Aligned_cols=142  Identities=26%  Similarity=0.444  Sum_probs=102.7

Q ss_pred             hcCCCCCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCH----HHHhc-cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTV----EELKR-KNPRGVLISPGPGAPQDSGISLQTVL   92 (163)
Q Consensus        19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~----~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~   92 (163)
                      |..-...++++||+||||+.++++.|.. .|..++++..++..-    ..+.. --+|+||+++||++|.-+.. ..++.
T Consensus         9 k~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d-~gI~~   87 (767)
T KOG1224|consen    9 KKSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAAD-IGICL   87 (767)
T ss_pred             HhhhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHH-HHHHH
Confidence            4444557899999999999999999965 566655554433221    22221 14999999999999954432 23333


Q ss_pred             H---hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC-CcCccccCCCCceEEeeeeeceec
Q 031223           93 E---LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        93 ~---~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~-~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +   ..+++||||||+|+|.|+.+.|+.|...+ .+.||....+++++. .-+.+++|-|+.|.+..||+..+.
T Consensus        88 rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in  160 (767)
T KOG1224|consen   88 RLLLECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIIN  160 (767)
T ss_pred             HHHHhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEec
Confidence            3   25689999999999999999999999666 577998888887641 124455555679999999998763

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.79  E-value=5.9e-19  Score=133.97  Aligned_cols=137  Identities=21%  Similarity=0.302  Sum_probs=101.1

Q ss_pred             CCCCeEEEEEC----------CCChHHHHHHHHHHcCCEEEEEeCCCC---CHHHHhccCCCEEEeCCCCCCCCCCh-h-
Q 031223           22 NNKNPIIVIDN----------YDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSG-I-   86 (163)
Q Consensus        22 ~~~~~Ilvid~----------~~~~~~~~~~~l~~~G~~~~v~~~~~~---~~~~~~~~~~dgvvl~GG~~~~~d~~-~-   86 (163)
                      ++..|++++..          +++|...+...|.+.|..+++++....   ..++++  +|+|+||||+..++.+.. + 
T Consensus         2 ~~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI   79 (245)
T KOG3179|consen    2 MEQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWI   79 (245)
T ss_pred             ccceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHH
Confidence            34567777732          455666788888889998887764322   234444  799999999988876543 2 


Q ss_pred             --HHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccce--eEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           87 --SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKS--SLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        87 --~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~--~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                        +...++++ ..++||+|||+|||++|++.||+|.|.+.+++.|-.  ..++.+. ....+|..+|.++.....|+|+|
T Consensus        80 ~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~-~~~~yFG~~~~~l~IikcHqDev  158 (245)
T KOG3179|consen   80 KKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAE-KPEKYFGEIPKSLNIIKCHQDEV  158 (245)
T ss_pred             HHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecc-cchhhcccchhhhhHHhhcccce
Confidence              35556664 467999999999999999999999999888665433  2333333 25678988999999999999987

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.76  E-value=8.4e-18  Score=134.02  Aligned_cols=122  Identities=22%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             HHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCC--------CCh--------hHHHHHHH-hCCCC
Q 031223           38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ--------DSG--------ISLQTVLE-LGPTV   98 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~--------d~~--------~~~~~i~~-~~~~~   98 (163)
                      ..+.+++...|..+.++++...+.+.+.  ...+|||||+||+.++.        +..        ...++++. +++++
T Consensus        29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~  108 (254)
T PRK11366         29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI  108 (254)
T ss_pred             HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence            3477888888988888875321112221  13699999999976542        110        12566776 47899


Q ss_pred             CEEEEehHHHHHHHHhCCeeeeCC----Ccccc------------cceeEEEeCCCCcCccccCC---CCceEEeeeeec
Q 031223           99 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMH------------GKSSLVYYDEKGEDGLLAGL---SKYVSISCYNIQ  159 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~----~~~e~------------G~~~~i~~~~~~~~~lf~~l---p~~~~v~~~H~~  159 (163)
                      |+||||+|||+|+.++||+|.+.-    ....|            +..+.|.+++   +.++..+   ++.+.|++||+|
T Consensus       109 PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~---~s~l~~i~~~~~~~~Vns~H~q  185 (254)
T PRK11366        109 PIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVEE---GGLLSALLPECSNFWVNSLHGQ  185 (254)
T ss_pred             CEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEECC---CCcHHHhcCCCceEEeehHHHH
Confidence            999999999999999999999751    00011            1235666653   2333333   257899999999


Q ss_pred             eec
Q 031223          160 CFA  162 (163)
Q Consensus       160 ~v~  162 (163)
                      +|.
T Consensus       186 ~V~  188 (254)
T PRK11366        186 GAK  188 (254)
T ss_pred             HHh
Confidence            874

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.75  E-value=1.8e-17  Score=143.84  Aligned_cols=128  Identities=17%  Similarity=0.229  Sum_probs=96.0

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LG   95 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~   95 (163)
                      ...+|+|||++.++..++.++|++.|+++.+++.    .+++.  ++|+|||+|+ +++...      ..+.+.+++ ++
T Consensus         5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~   77 (538)
T PLN02617          5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQ   77 (538)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHH
Confidence            3468999999999999999999999999987753    34453  7999999664 443221      113455666 46


Q ss_pred             CCCCEEEEehHHHHHHHHh---------C---CeeeeCCC-----cccccceeEEEeCCCCcCccccCCCCceEEeeeee
Q 031223           96 PTVPLFGVCMGLQCIGEAF---------G---GKIVRSPL-----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNI  158 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~---------G---g~v~~~~~-----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~  158 (163)
                      .++|+||||+|||+|+.++         |   |+|.+.+.     .+++||. .+....  +++||.+++ .+.+++||+
T Consensus        78 ~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~-~V~~~~--~spL~~~l~-~~~vy~vHS  153 (538)
T PLN02617         78 NDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWN-ALQITK--DSELLDGVG-GRHVYFVHS  153 (538)
T ss_pred             cCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecce-EEEecC--CChhHhcCC-CcEEEEEeE
Confidence            7899999999999999973         3   67766421     2468997 566544  689999995 568999999


Q ss_pred             cee
Q 031223          159 QCF  161 (163)
Q Consensus       159 ~~v  161 (163)
                      |.+
T Consensus       154 y~v  156 (538)
T PLN02617        154 YRA  156 (538)
T ss_pred             EEE
Confidence            986

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.72  E-value=1.1e-16  Score=124.83  Aligned_cols=123  Identities=23%  Similarity=0.299  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCC----------CCh-------h-HHHHHHH-hC
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ----------DSG-------I-SLQTVLE-LG   95 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~----------d~~-------~-~~~~i~~-~~   95 (163)
                      ...+++++.+.|..+.++++. .+.+.+..  ..+||||++||..+..          ...       . ...+++. .+
T Consensus        26 ~~~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~  104 (217)
T PF07722_consen   26 AASYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALG  104 (217)
T ss_dssp             EHHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHh
Confidence            346889999999999999976 23444432  3899999999974321          010       0 1344444 37


Q ss_pred             CCCCEEEEehHHHHHHHHhCCeeeeCCCc----cc------ccceeEEEeCCCCcCccccCCC-CceEEeeeeeceec
Q 031223           96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLG----VM------HGKSSLVYYDEKGEDGLLAGLS-KYVSISCYNIQCFA  162 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~----~e------~G~~~~i~~~~~~~~~lf~~lp-~~~~v~~~H~~~v~  162 (163)
                      +++||||||+|||+|+.++||++.+.-..    ..      ....|.+.+..  ++.|.+-++ +++.|+++|+++|.
T Consensus       105 ~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~--~s~l~~~~~~~~~~vns~Hhq~v~  180 (217)
T PF07722_consen  105 RGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVP--GSLLAKILGSEEIEVNSFHHQAVK  180 (217)
T ss_dssp             TT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEET--TSTCCCTSHHCTEEEEEEECEEEC
T ss_pred             cCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceecc--CchHHHHhCcCcceeecchhhhhh
Confidence            89999999999999999999999875411    00      12335565553  344443333 68999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.72  E-value=1.9e-17  Score=126.55  Aligned_cols=88  Identities=18%  Similarity=0.313  Sum_probs=66.5

Q ss_pred             CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCC--------------Ch---hHHHHHHH
Q 031223           33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG---ISLQTVLE   93 (163)
Q Consensus        33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d--------------~~---~~~~~i~~   93 (163)
                      .++++.++.++|++.|+.+.+++++. +.++++.  .++|||||+||++...+              ..   ...+++++
T Consensus        17 ~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   95 (189)
T cd01745          17 RDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRA   95 (189)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHH
Confidence            34568889999999999999998752 3333321  37999999999864321              10   12566666


Q ss_pred             h-CCCCCEEEEehHHHHHHHHhCCeeeeC
Q 031223           94 L-GPTVPLFGVCMGLQCIGEAFGGKIVRS  121 (163)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (163)
                      + +.++|+||||+|||+|+.++||+|.+.
T Consensus        96 ~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~  124 (189)
T cd01745          96 ALERGKPILGICRGMQLLNVALGGTLYQD  124 (189)
T ss_pred             HHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence            4 678999999999999999999999875

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.71  E-value=5.2e-17  Score=128.11  Aligned_cols=127  Identities=20%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             ECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HH---HHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEe
Q 031223           31 DNYDSFTYNLCQYMGELGYHFEVYRNDELT--VE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC  104 (163)
Q Consensus        31 d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~---~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC  104 (163)
                      |+++++...+..+..+.+..+.+...+..+  ..   +. ..++||||++||++.+.... ....+++ +++++|+||||
T Consensus        14 day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~-l~~~dgivl~GG~~~~~~~~-~~~~i~~~~~~~~PvlGIC   91 (235)
T cd01746          14 DAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEA-LKGADGILVPGGFGIRGVEG-KILAIKYARENNIPFLGIC   91 (235)
T ss_pred             HHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhh-hccCCEEEECCCCCCcchhh-HHHHHHHHHHCCceEEEEE
Confidence            556666777777777777777765433211  11   11 13799999999998766543 3455665 47889999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcc--c--ccc------------------------eeEEEeCCCCcCccccCCCC-ceEEee
Q 031223          105 MGLQCIGEAFGGKIVRSPLGV--M--HGK------------------------SSLVYYDEKGEDGLLAGLSK-YVSISC  155 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~--e--~G~------------------------~~~i~~~~~~~~~lf~~lp~-~~~v~~  155 (163)
                      +|||+|+.++||++.+.+...  +  .+.                        .|.+.+.+  ++.|.+-++. ...+++
T Consensus        92 lG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~--~s~l~~~~g~~~~~~n~  169 (235)
T cd01746          92 LGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKP--GTLAHKYYGKDEVEERH  169 (235)
T ss_pred             hHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECC--CChHHHHhCCCEEEEec
Confidence            999999999999987654210  0  111                        13344432  3444444443 468999


Q ss_pred             eeecee
Q 031223          156 YNIQCF  161 (163)
Q Consensus       156 ~H~~~v  161 (163)
                      +|+++|
T Consensus       170 ~H~~~v  175 (235)
T cd01746         170 RHRYEV  175 (235)
T ss_pred             Cccccc
Confidence            999987

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.70  E-value=9.2e-17  Score=129.28  Aligned_cols=125  Identities=11%  Similarity=0.117  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC---hhHHHHHHHh----CC--CCCEEEEeh
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS---GISLQTVLEL----GP--TVPLFGVCM  105 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~---~~~~~~i~~~----~~--~~PvLGIC~  105 (163)
                      ...+.+++++.|+.+..+..+ .+.+.++.  ..+||||++||+.++...   .....+++.+    ++  .+|+||||+
T Consensus        22 ~~~Yv~~l~~aG~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl  100 (273)
T cd01747          22 AASYVKFLESAGARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCL  100 (273)
T ss_pred             HHHHHHHHHHCCCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence            445889999999998877765 22334332  379999999998766422   1223333332    22  389999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCC--------ceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSK--------YVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~--------~~~v~~~H~~~v~  162 (163)
                      |+|+|+.++||++........+|...++.+++ ..+++||+++|.        ...++++|+++|+
T Consensus       101 G~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~  166 (273)
T cd01747         101 GFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGIS  166 (273)
T ss_pred             HHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccC
Confidence            99999999999855422134567766887764 346889999875        4578999999884

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.69  E-value=1.7e-16  Score=123.85  Aligned_cols=121  Identities=18%  Similarity=0.277  Sum_probs=82.3

Q ss_pred             HHHHHHHHHcCCEEEEEeCC--CCCHHHHhccCCCEEEeCCCCCCCC---------------CC--h-hHHHHHHH-hCC
Q 031223           38 YNLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPGAPQ---------------DS--G-ISLQTVLE-LGP   96 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~--~~~~~~~~~~~~dgvvl~GG~~~~~---------------d~--~-~~~~~i~~-~~~   96 (163)
                      ..+.++....|.-+.++|.-  ..+...+. ...||||++|| .++.               +.  + ....+|++ +++
T Consensus        29 ~~yv~ai~~aGg~pillP~~~d~~~~~~~l-~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~  106 (243)
T COG2071          29 YDYVDAIIKAGGIPILLPALEDPEDARQYL-DLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER  106 (243)
T ss_pred             HHHHHHHHHcCCceEEecCCCCHHHHHHHH-hhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence            34667777788888888832  11222222 36999999999 4321               00  1 13677777 589


Q ss_pred             CCCEEEEehHHHHHHHHhCCeeeeCCC-----------cccccceeEEEeCCCCcCccccCCCCc-eEEeeeeeceec
Q 031223           97 TVPLFGVCMGLQCIGEAFGGKIVRSPL-----------GVMHGKSSLVYYDEKGEDGLLAGLSKY-VSISCYNIQCFA  162 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~-----------~~e~G~~~~i~~~~~~~~~lf~~lp~~-~~v~~~H~~~v~  162 (163)
                      ++||||||+|+|+|+.||||++++.-.           .+..-..|.|.+.+  ++-|.+-+++. +.|+++|+|++.
T Consensus       107 ~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~--~s~La~i~g~~~~~VNS~HhQaIk  182 (243)
T COG2071         107 GIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEP--GSKLAKILGESEFMVNSFHHQAIK  182 (243)
T ss_pred             CCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecC--CccHHHhcCccceeecchHHHHHH
Confidence            999999999999999999999987421           00111145666654  56666666655 999999999863

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.69  E-value=1.8e-16  Score=141.33  Aligned_cols=106  Identities=28%  Similarity=0.476  Sum_probs=86.7

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~Pv  100 (163)
                      +...+|+.+|+  +...+.+|+|...|+++.++|++. ++   ...+||||+++.||++|.-.+.+.+-+++ +..++|+
T Consensus       170 Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~~-~i---~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~Pv  243 (1435)
T KOG0370|consen  170 GKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWDY-PI---AKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPV  243 (1435)
T ss_pred             CcccEEEEccc--CchHHHHHHHHHhCceEEEecCCc-cc---cccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCe
Confidence            34578999998  467889999999999999999862 22   23389999999999999887777777777 4556999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEE
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVY  134 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~  134 (163)
                      +|||+|||+||.|.|++..+++++ .+|.+.+.+
T Consensus       244 fGIClGHQllA~AaGakT~KmKyG-NRGhNiP~~  276 (1435)
T KOG0370|consen  244 FGICLGHQLLALAAGAKTYKMKYG-NRGHNIPCT  276 (1435)
T ss_pred             EEEehhhHHHHHhhCCceEEeecc-ccCCCccce
Confidence            999999999999999999999864 456655544

>TIGR00337 PyrG CTP synthase

Probab=99.68  E-value=3e-16  Score=134.94  Aligned_cols=114  Identities=18%  Similarity=0.279  Sum_probs=84.5

Q ss_pred             cCCChhhHhhHHhhhcCCCCCeEEEEECCCChH---HHHHHHHHHcCC----EEEEEeCCCCCHHHHh------ccCCCE
Q 031223            5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGELGY----HFEVYRNDELTVEELK------RKNPRG   71 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~---~~~~~~l~~~G~----~~~v~~~~~~~~~~~~------~~~~dg   71 (163)
                      +.++..|+.++++.+++....+|+++--|....   .++.++|...|+    .+.+...+   .+++.      ..++||
T Consensus       270 ~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dG  346 (525)
T TIGR00337       270 EADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDG  346 (525)
T ss_pred             CCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCE
Confidence            356889999999999998889999995553322   368888888776    34433322   22221      136999


Q ss_pred             EEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223           72 VLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP  122 (163)
Q Consensus        72 vvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (163)
                      ||++||++++.+.... +.++. .++++|+||||+|||+|+.++|+++....
T Consensus       347 IiLpGG~G~~~~~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~  397 (525)
T TIGR00337       347 ILVPGGFGERGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK  397 (525)
T ss_pred             EEeCCCCCChhhcChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence            9999999887665543 45555 36889999999999999999999887754

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.67  E-value=1.8e-15  Score=118.76  Aligned_cols=127  Identities=18%  Similarity=0.196  Sum_probs=89.3

Q ss_pred             CeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC--------ChhHHHHHHHh-
Q 031223           25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL-   94 (163)
Q Consensus        25 ~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d--------~~~~~~~i~~~-   94 (163)
                      |||+||++.+++ ...+.++|++.|+++++++....   .++  ++|+|||+||+....+        .....++++++ 
T Consensus         1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~   75 (227)
T TIGR01737         1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA   75 (227)
T ss_pred             CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence            479999998775 67789999999999988875421   233  7999999999642111        12245667774 


Q ss_pred             CCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccc--cceeEEEeCCCCcCccccCCCCceEEee--eeec
Q 031223           95 GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMH--GKSSLVYYDEKGEDGLLAGLSKYVSISC--YNIQ  159 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~--G~~~~i~~~~~~~~~lf~~lp~~~~v~~--~H~~  159 (163)
                      ++++|++|||.|+|+|+.+  ++|++.+... .++  +|. .+++.. .++++|++++....++.  .|.+
T Consensus        76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~-~~~~~~~~-~~~v~~-~~~~~~~~~~~g~~~~~pi~H~e  143 (227)
T TIGR01737        76 EKGVPVLGICNGFQILVEAGLLPGALLPNDS-LRFICRWV-YLRVEN-ADTIFTKNYKKGEVIRIPIAHGE  143 (227)
T ss_pred             HcCCEEEEECHHHHHHHHcCCCCCceeecCC-CceEEEeE-EEEECC-CCChhhccCCCCCEEEEEeEcCC
Confidence            7889999999999999996  8999888763 344  444 344432 25788888875333332  4544

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.67  E-value=7e-16  Score=118.13  Aligned_cols=118  Identities=17%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHhCCCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLELGPTVP   99 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~~~~~P   99 (163)
                      ||+|||++.++..++.++|++.|+++.+++.    .+++.  ++|+||++|+ +++.+..      .+.+.|++ ..++|
T Consensus         1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~P   72 (192)
T PRK13142          1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKK   72 (192)
T ss_pred             CEEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCe
Confidence            3899999999999999999999999988863    35664  7999988665 5533221      13555665 56899


Q ss_pred             EEEEehHHHHHHHHh--C---------CeeeeCCC---cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          100 LFGVCMGLQCIGEAF--G---------GKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       100 vLGIC~G~QlLa~a~--G---------g~v~~~~~---~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +||||+|||+|++..  |         ++|.+.+.   -|..||+. +..    +.++|+     .++++.|++.+
T Consensus        73 vlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~-~~~----~~~l~~-----~~~yFVhSy~v  138 (192)
T PRK13142         73 MIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNN-LVS----KHPMLN-----QDVYFVHSYQA  138 (192)
T ss_pred             EEEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccc-cCC----CCcccc-----cEEEEECCCeE
Confidence            999999999999975  2         34444421   13446652 221    244553     46899999877

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.67  E-value=2.4e-16  Score=135.57  Aligned_cols=114  Identities=17%  Similarity=0.276  Sum_probs=81.0

Q ss_pred             cCCChhhHhhHHhhhcCCCCCeEEEEECCCChH---HHHHHHHHH----cCCEEEEEeCCCCCHHH--H--hccCCCEEE
Q 031223            5 EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFT---YNLCQYMGE----LGYHFEVYRNDELTVEE--L--KRKNPRGVL   73 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~---~~~~~~l~~----~G~~~~v~~~~~~~~~~--~--~~~~~dgvv   73 (163)
                      +.++..|+.++++.+++....+|++|--|....   .++.++|+.    .+..+++...+...+++  .  ...++||||
T Consensus       269 ~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGII  348 (533)
T PRK05380        269 EPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGIL  348 (533)
T ss_pred             CCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEE
Confidence            467899999999999998889999995443221   134555544    45566665544222111  1  113799999


Q ss_pred             eCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeee
Q 031223           74 ISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIV  119 (163)
Q Consensus        74 l~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (163)
                      ++||++.....+. ..+++. .++++|+||||+|||+|+.++|+++.
T Consensus       349 lpGGfG~~~~~g~-i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~  394 (533)
T PRK05380        349 VPGGFGERGIEGK-ILAIRYARENNIPFLGICLGMQLAVIEFARNVL  394 (533)
T ss_pred             ecCCCCccccccH-HHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence            9999887655543 455666 47889999999999999999999984

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.66  E-value=6.9e-16  Score=117.37  Aligned_cols=119  Identities=18%  Similarity=0.298  Sum_probs=84.0

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHH-hCCCCCEE
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLF  101 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~-~~~~~PvL  101 (163)
                      |+++++  .+...+ ++|++.|+++..+++.    +++.  ++|+||++||+.+..+.    ....++|++ +++++|+|
T Consensus         3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl   73 (183)
T cd01749           3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF   73 (183)
T ss_pred             EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence            566765  333333 8999999999888652    3443  79999999998654432    124566777 47899999


Q ss_pred             EEehHHHHHHHHhCC------------eeeeCCCcccccceeEEEeCCCCcCccccCC-CCceEEeeeeeceec
Q 031223          102 GVCMGLQCIGEAFGG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL-SKYVSISCYNIQCFA  162 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg------------~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~l-p~~~~v~~~H~~~v~  162 (163)
                      |||+|+|+|+.++|+            +|.+.+.+++.|+. ...+       .+.++ ++.+.++.+|.+.|.
T Consensus        74 GiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~-~~~l-------~~~~~~~~~~~~~~~h~~~v~  139 (183)
T cd01749          74 GTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF-EADL-------DIPGLGLGPFPAVFIRAPVIE  139 (183)
T ss_pred             EECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE-EEcC-------CCCcCCCCccEEEEEECcEEE
Confidence            999999999999998            67665545555543 2222       23444 377999999999873

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.63  E-value=5.9e-15  Score=112.47  Aligned_cols=127  Identities=17%  Similarity=0.207  Sum_probs=86.8

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-CCCCCEE
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVPLF  101 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~~~~PvL  101 (163)
                      |.|+-..+.+. ...++|+++|+++.+++.    .++++  ++|++||+||+++..+    ...+.+.|+++ ++++|++
T Consensus         2 igvl~~qg~~~-e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pil   74 (184)
T TIGR03800         2 IGVLALQGAVR-EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVF   74 (184)
T ss_pred             EEEEEccCCHH-HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEE
Confidence            44454433343 466999999999988864    34454  7999999999765421    12345667774 7889999


Q ss_pred             EEehHHHHHHHHh-----------CCeeeeCCCcccccceeEEEeCC-C-CcC---------ccccCCCCceEEeeeeec
Q 031223          102 GVCMGLQCIGEAF-----------GGKIVRSPLGVMHGKSSLVYYDE-K-GED---------GLLAGLSKYVSISCYNIQ  159 (163)
Q Consensus       102 GIC~G~QlLa~a~-----------Gg~v~~~~~~~e~G~~~~i~~~~-~-~~~---------~lf~~lp~~~~v~~~H~~  159 (163)
                      |||+|+|+|+.++           ++++.+...+++.|.. ...++. + ..+         +....+|+.+.+..+|.+
T Consensus        75 GIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~-~~~l~~~~~~~~~~~~~~~h~~~v~~lp~~~~vla~~~~  153 (184)
T TIGR03800        75 GTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSF-EAEVDIKGVGDDPITGVFIRAPKIVSVGNGVEILAKVGN  153 (184)
T ss_pred             EECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccE-EEEeecccCCCCcceEEEEcCCCcccCCCCeEEEEEeCC
Confidence            9999999999997           2677776655566665 333332 1 122         445678888999888876


Q ss_pred             ee
Q 031223          160 CF  161 (163)
Q Consensus       160 ~v  161 (163)
                      ++
T Consensus       154 ~~  155 (184)
T TIGR03800       154 RI  155 (184)
T ss_pred             ee
Confidence            54

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.60  E-value=2.2e-14  Score=116.61  Aligned_cols=135  Identities=13%  Similarity=0.106  Sum_probs=88.4

Q ss_pred             CeEEEEECCCC---hHHHHHHHHHHcCCE--EEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCC--CC
Q 031223           25 NPIIVIDNYDS---FTYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGA--PQ   82 (163)
Q Consensus        25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~--~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~--~~   82 (163)
                      .+|+|++.-..   ....+.|.|......  ++.+....               .++++++..+|||+||+|+|-+  ++
T Consensus        36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f  115 (302)
T PRK05368         36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF  115 (302)
T ss_pred             ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence            78999987543   233466666543333  44443221               2345565568999999999976  44


Q ss_pred             CChh----HHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223           83 DSGI----SLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN  157 (163)
Q Consensus        83 d~~~----~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H  157 (163)
                      +...    +.+++..+ +..+|+||||+|+|+++.++||.......+.+.|.. ....... .+||++|+++.|.+.++|
T Consensus       116 edv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~-~~~~~~~-~~pL~~g~~d~F~~phSr  193 (302)
T PRK05368        116 EDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVF-EHRVLDP-HHPLLRGFDDSFLVPHSR  193 (302)
T ss_pred             CCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEE-EEEEcCC-CChhhcCCCCccccceee
Confidence            4322    22333222 457999999999999999999962222212456754 2233332 689999999999999999


Q ss_pred             ecee
Q 031223          158 IQCF  161 (163)
Q Consensus       158 ~~~v  161 (163)
                      .+.|
T Consensus       194 ~~~V  197 (302)
T PRK05368        194 YTEV  197 (302)
T ss_pred             hhhc
Confidence            8876

>PLN02327 CTP synthase

Probab=99.57  E-value=8.5e-15  Score=126.41  Aligned_cols=115  Identities=17%  Similarity=0.218  Sum_probs=80.2

Q ss_pred             cCCChhhHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHH----HcCCEEEEEeCCCCCHHH------------H
Q 031223            5 EAVPISKSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMG----ELGYHFEVYRNDELTVEE------------L   64 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~----~~G~~~~v~~~~~~~~~~------------~   64 (163)
                      +.++..|+.++++.+++....+|++|--|    |+|. ++.++|+    +.+..+++...+...+++            +
T Consensus       278 ~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~-Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~  356 (557)
T PLN02327        278 EPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYL-SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAA  356 (557)
T ss_pred             CCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHH-HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhh
Confidence            35689999999999999888999999443    3332 2344443    456666665433211110            0


Q ss_pred             --hccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhCCeeeeC
Q 031223           65 --KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRS  121 (163)
Q Consensus        65 --~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~~~  121 (163)
                        ...++|||+++||++++...+.. ..++. .++++|+||||+|||+++.+|+.+|...
T Consensus       357 ~~~L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClGmQl~viefaRnvlG~  415 (557)
T PLN02327        357 WKLLKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLGMQIAVIEFARSVLGL  415 (557)
T ss_pred             HHhhccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence              01379999999999876666553 34454 3689999999999999999999877654

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.54  E-value=1e-13  Score=109.62  Aligned_cols=131  Identities=15%  Similarity=0.171  Sum_probs=87.2

Q ss_pred             EEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--------hh-HHHHHHHh-C
Q 031223           27 IIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--------GI-SLQTVLEL-G   95 (163)
Q Consensus        27 Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~--------~~-~~~~i~~~-~   95 (163)
                      |+||.+.++ ....+.++|++.|+++++++..+....+....+||+|||+||+......        .. +.++++++ +
T Consensus         1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~   80 (238)
T cd01740           1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE   80 (238)
T ss_pred             CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence            456666555 5778999999999999988764321111112379999999997422111        11 55677774 7


Q ss_pred             CCCCEEEEehHHHHHHHH--hCCeeeeCCCcccccc-----eeEEEeCCCCcCccccC--CCCceEEeeeeec
Q 031223           96 PTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK-----SSLVYYDEKGEDGLLAG--LSKYVSISCYNIQ  159 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~G~-----~~~i~~~~~~~~~lf~~--lp~~~~v~~~H~~  159 (163)
                      +++|+||||.|+|+|+.+  ++|++.+.+. .+...     ...+++.. .++++++.  .+..+.++..|++
T Consensus        81 ~g~pvlGIC~G~QlL~~~gll~g~~~~~~~-~~~~~~~~~~~v~~~v~~-~~si~t~~~~~g~~l~~~vaHge  151 (238)
T cd01740          81 RGGLVLGICNGFQILVELGLLPGALIRNKG-LKFICRWQNRFVTLRVEN-NDSPFTKGYMEGEVLRIPVAHGE  151 (238)
T ss_pred             CCCeEEEECcHHHHHHHcCCCccccccCCC-CceeccccCceEEEEEcC-CCCceecCCCCCCEEEEEeECCc
Confidence            899999999999999998  8898876552 22221     11233322 25677765  4567899999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.53  E-value=3.2e-13  Score=105.55  Aligned_cols=127  Identities=19%  Similarity=0.259  Sum_probs=89.8

Q ss_pred             CeEEEEECCCCh-HHHHHHHHH-HcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--------CChhHHHHHHHh
Q 031223           25 NPIIVIDNYDSF-TYNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLEL   94 (163)
Q Consensus        25 ~~Ilvid~~~~~-~~~~~~~l~-~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--------d~~~~~~~i~~~   94 (163)
                      |||+||.+.+++ ...+.++|+ ..|+++..+...+   .+++  ++|+|||+||+..-.        ....+.++++++
T Consensus         1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~   75 (219)
T PRK03619          1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF   75 (219)
T ss_pred             CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence            479999998887 566899998 8999888776542   2333  799999999964211        112356777774


Q ss_pred             -CCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccc--cceeEEEeCCCCcCccccCCCC--ceEEeeeeec
Q 031223           95 -GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMH--GKSSLVYYDEKGEDGLLAGLSK--YVSISCYNIQ  159 (163)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~--G~~~~i~~~~~~~~~lf~~lp~--~~~v~~~H~~  159 (163)
                       ++++|++|||.|+|+|+.+  ++|++.+... .++  +|. .+++.. .++++++++..  .+.+.-.|++
T Consensus        76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~-~~~~~~~v-~v~i~~-~~~~~~~~~~~g~~~~~~~aH~~  144 (219)
T PRK03619         76 AEKGKPVLGICNGFQILTEAGLLPGALTRNAS-LKFICRDV-HLRVEN-NDTPFTSGYEKGEVIRIPIAHGE  144 (219)
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCC-CcEEEEEE-EEEECC-CCChhhcCCCCCCEEEEEEEcCc
Confidence             7899999999999999998  8999988763 344  443 455543 25788888743  3444445654

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.46  E-value=2.1e-12  Score=103.37  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             CCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--CCh-----h----HHH
Q 031223           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--DSG-----I----SLQ   89 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--d~~-----~----~~~   89 (163)
                      ++++||+||.+.+++ +....++|++.|+++++++..+.........+||+|||+||.+...  ...     .    +.+
T Consensus         1 ~~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~   80 (261)
T PRK01175          1 MESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRK   80 (261)
T ss_pred             CCCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHH
Confidence            356789999986664 7778899999999999887532111111123799999999953211  111     1    235


Q ss_pred             HHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           90 TVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        90 ~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      .|++ +++++|+||||+|+|+|+.+
T Consensus        81 ~Ik~f~~~gkpVLGICnG~QlLa~~  105 (261)
T PRK01175         81 DIEEFIDEGYPIIGICNGFQVLVEL  105 (261)
T ss_pred             HHHHHHHCCCeEEEECHHHHHHHHC
Confidence            5666 47899999999999999985

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.44  E-value=2.2e-12  Score=100.04  Aligned_cols=130  Identities=18%  Similarity=0.310  Sum_probs=85.0

Q ss_pred             CCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---h------hHHHHHHH
Q 031223           24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G------ISLQTVLE   93 (163)
Q Consensus        24 ~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~------~~~~~i~~   93 (163)
                      .+||+||.+-+++ ....+.+++.+|.+++.+...+....    .++|+||++||. |..|.   +      .+++.+++
T Consensus         2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGF-SyGDyLr~Gaiaa~~~v~~~v~~   76 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGF-SYGDYLRAGAIAAIAPVMDEVRE   76 (231)
T ss_pred             CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCC-CcccccCcchHHhhHHHHHHHHH
Confidence            5789999987775 55688999999999998876422111    169999999994 44443   2      24566666


Q ss_pred             -hCCCCCEEEEehHHHHHHHH--hCCeeeeCCCcccccceeEEEeCCCCcCccccCCC--CceEEeeeeec
Q 031223           94 -LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--KYVSISCYNIQ  159 (163)
Q Consensus        94 -~~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp--~~~~v~~~H~~  159 (163)
                       +++++|+||||.|+|+|.++  +-|...+............+++.. .+++++++..  +.+.+--.|.+
T Consensus        77 ~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~-~~t~ft~~~~~g~~i~ipVAHgE  146 (231)
T COG0047          77 FAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVEN-NNTPFTSGYEGGEVIPIPVAHGE  146 (231)
T ss_pred             HHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEec-CCCHHHHhcCCCceEEEEEeecc
Confidence             47899999999999999975  557777665322223322444443 1455555553  34555555543

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.43  E-value=4.7e-13  Score=113.30  Aligned_cols=109  Identities=19%  Similarity=0.332  Sum_probs=76.9

Q ss_pred             ccCCChhhHhhHHhhhcCCCCCeEEEEECC----CChHHHHHHHHHHc----CCEEEEEeCCCCCH-----HHHhccCCC
Q 031223            4 AEAVPISKSLYLDDKKSKNNKNPIIVIDNY----DSFTYNLCQYMGEL----GYHFEVYRNDELTV-----EELKRKNPR   70 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~Ilvid~~----~~~~~~~~~~l~~~----G~~~~v~~~~~~~~-----~~~~~~~~d   70 (163)
                      -+.+++.|+.++++++++....+|+++--|    |+|. ++.++|+..    +..+.+...+..++     +.+.. .+|
T Consensus       268 ~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~-Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~d  345 (533)
T COG0504         268 PEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYK-SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVD  345 (533)
T ss_pred             CCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHH-HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCC
Confidence            357899999999999998888999999544    3333 355566654    45555554432221     12221 299


Q ss_pred             EEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223           71 GVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        71 gvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      ||+++||.+....++++. .++. .++++|+||||+|||+....+-
T Consensus       346 gIlVPGGFG~RG~eGkI~-Ai~yAREn~iP~lGIClGmQ~aviE~A  390 (533)
T COG0504         346 GILVPGGFGYRGVEGKIA-AIRYARENNIPFLGICLGMQLAVIEFA  390 (533)
T ss_pred             EEEeCCCCCcCchHHHHH-HHHHHHhcCCCEEEEchhHHHHHHHHH
Confidence            999999998777777754 3444 4799999999999999987654

>PRK06186 hypothetical protein; Validated

Probab=99.41  E-value=5.1e-13  Score=104.68  Aligned_cols=92  Identities=15%  Similarity=0.248  Sum_probs=58.0

Q ss_pred             CeEEEEECC----CChHHHHHHHHHH----cCCEEEEEeCCCCCHHHH-hccCCCEEEeCCCCCCCCCChhHHHHHHH-h
Q 031223           25 NPIIVIDNY----DSFTYNLCQYMGE----LGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLE-L   94 (163)
Q Consensus        25 ~~Ilvid~~----~~~~~~~~~~l~~----~G~~~~v~~~~~~~~~~~-~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~   94 (163)
                      .+|++|--|    |+|. ++.++|+.    .+..+++...+...+++- ...++|||+++||.+....++++ .+++. .
T Consensus         2 v~IalVGKY~~~~daY~-Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gki-~ai~~Ar   79 (229)
T PRK06186          2 LRIALVGDYNPDVTAHQ-AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGAL-TAIRFAR   79 (229)
T ss_pred             cEEEEEECCcCCcHHHH-HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHHH-HHHHHHH
Confidence            478888443    3333 34444543    566666655432222110 11379999999998876666665 44555 4


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCee
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKI  118 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v  118 (163)
                      ++++|+||||+|||++...++..+
T Consensus        80 e~~iP~LGIClGmQ~avIe~arnv  103 (229)
T PRK06186         80 ENGIPFLGTCGGFQHALLEYARNV  103 (229)
T ss_pred             HcCCCeEeechhhHHHHHHHHhhh
Confidence            789999999999998766655444

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=99.35  E-value=7.4e-12  Score=94.60  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=67.1

Q ss_pred             HHhccCCCEEEeCCCCCCCCCCh------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCee-eeCCCcccccceeEEE
Q 031223           63 ELKRKNPRGVLISPGPGAPQDSG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSLVY  134 (163)
Q Consensus        63 ~~~~~~~dgvvl~GG~~~~~d~~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v-~~~~~~~e~G~~~~i~  134 (163)
                      +++..+|||+||+|.|-.-.+.+      ++.+++.-. ++..|+||||.|+|....++||.. .+.+.+ ..|.. ...
T Consensus        57 ~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K-~~Gvf-~~~  134 (175)
T cd03131          57 DIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEK-IFGVF-PHT  134 (175)
T ss_pred             HccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCc-eEEEE-Eee
Confidence            35556899999999987433221      222222222 467999999999999999999986 555533 34543 222


Q ss_pred             eCCCCcCccccCCCCceEEeeeeeceec
Q 031223          135 YDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       135 ~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +..  .+||++|+++.|.+.++|...|+
T Consensus       135 ~~~--~hpL~~g~~d~F~~PhSR~~~v~  160 (175)
T cd03131         135 ILE--PHPLLRGLDDGFDVPHSRYAEVD  160 (175)
T ss_pred             ecC--CCccccCCCCceeecCcccccCC
Confidence            222  68999999999999999988764

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.32  E-value=9.5e-12  Score=94.18  Aligned_cols=94  Identities=13%  Similarity=0.313  Sum_probs=69.1

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC--C--CChhHHHHHHHhCCCCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP--Q--DSGISLQTVLELGPTVP   99 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~--~--d~~~~~~~i~~~~~~~P   99 (163)
                      .++|.|+...+.+.. -.++|+..|+++.+++    +.+++.  ++|+|||+||.+..  .  ....+.+.|+++.+++|
T Consensus         2 ~~~igVLalqG~~~E-h~~al~~lG~~v~~v~----~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kp   74 (179)
T PRK13526          2 TQKVGVLAIQGGYQK-HADMFKSLGVEVKLVK----FNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKP   74 (179)
T ss_pred             CcEEEEEECCccHHH-HHHHHHHcCCcEEEEC----CHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCc
Confidence            378999988777655 5688999999887775    245654  79999999985542  1  11235677777544789


Q ss_pred             EEEEehHHHHHHHH---hC---CeeeeCCCc
Q 031223          100 LFGVCMGLQCIGEA---FG---GKIVRSPLG  124 (163)
Q Consensus       100 vLGIC~G~QlLa~a---~G---g~v~~~~~~  124 (163)
                      ++|||.|+|+|+..   +|   ++|.+..++
T Consensus        75 ilGICaG~qlL~~~s~~Lg~idg~V~Rn~~G  105 (179)
T PRK13526         75 VFGTCAGSIILSKGEGYLNLLDLEVQRNAYG  105 (179)
T ss_pred             EEEEcHHHHHHHccCCCCCCccEEEEEcCCC
Confidence            99999999999983   44   688877643

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.25  E-value=2.4e-11  Score=96.44  Aligned_cols=83  Identities=23%  Similarity=0.326  Sum_probs=61.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-CCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-GPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~~~~P   99 (163)
                      |+|.|+.+.+.+... .++|+++|+++.+++.    .+++.  ++|+|||+||......    ...+.+.|+++ ++++|
T Consensus         2 m~igVLa~qG~~~e~-~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~P   74 (248)
T PLN02832          2 MAIGVLALQGSFNEH-IAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKP   74 (248)
T ss_pred             cEEEEEeCCCchHHH-HHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCC
Confidence            579999998776654 6889999999887753    35665  7999999997543211    11245566664 68899


Q ss_pred             EEEEehHHHHHHHHh
Q 031223          100 LFGVCMGLQCIGEAF  114 (163)
Q Consensus       100 vLGIC~G~QlLa~a~  114 (163)
                      +||||.|||+|+...
T Consensus        75 vLGiC~GmqlLa~~~   89 (248)
T PLN02832         75 VWGTCAGLIFLAERA   89 (248)
T ss_pred             EEEEChhHHHHHHHh
Confidence            999999999999864

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=99.15  E-value=1.2e-10  Score=89.44  Aligned_cols=83  Identities=20%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             EEEEECC-CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hhHHHHHHH-hCCCCC
Q 031223           27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVP   99 (163)
Q Consensus        27 Ilvid~~-~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~~~~~i~~-~~~~~P   99 (163)
                      |+|++.. .++...+.+++++.|++++++++..    ++  .++|+|||+||.....+.     ..+.+.|++ .++++|
T Consensus         1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~--~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p   74 (194)
T cd01750           1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GL--GDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP   74 (194)
T ss_pred             CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CC--CCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence            4677764 4578889999999999999998642    23  378999998886322111     124566666 478999


Q ss_pred             EEEEehHHHHHHHHhC
Q 031223          100 LFGVCMGLQCIGEAFG  115 (163)
Q Consensus       100 vLGIC~G~QlLa~a~G  115 (163)
                      +||||.|+|+|++.+.
T Consensus        75 vlgiC~G~qlL~~~~~   90 (194)
T cd01750          75 VLGICGGYQMLGKYIV   90 (194)
T ss_pred             EEEECHHHHHhhhhcc
Confidence            9999999999999873

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.11  E-value=2e-10  Score=96.45  Aligned_cols=110  Identities=17%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             CCChhhHhhHHhhhcCCCCCeEEEEECCCChHHH---HHHHHHH----cCCEEEEEeCCCCCHHH---------Hh----
Q 031223            6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYN---LCQYMGE----LGYHFEVYRNDELTVEE---------LK----   65 (163)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~---~~~~l~~----~G~~~~v~~~~~~~~~~---------~~----   65 (163)
                      ..+.+|++..++.++.....+|+++--|-....+   +..+|..    .+...++...+..+++.         ..    
T Consensus       280 ~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~  359 (585)
T KOG2387|consen  280 PMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQ  359 (585)
T ss_pred             hhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHH
Confidence            5678999999999999999999999555443332   3344433    23333333222111111         10    


Q ss_pred             -ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhC
Q 031223           66 -RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        66 -~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~G  115 (163)
                       ....|||+++||.++..-++.+.++-..-++++|.||||+|||+.+.-|.
T Consensus       360 ~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfa  410 (585)
T KOG2387|consen  360 KLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFA  410 (585)
T ss_pred             HhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHH
Confidence             12589999999998777666654332233689999999999999887654

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=99.09  E-value=1e-09  Score=89.88  Aligned_cols=124  Identities=13%  Similarity=0.211  Sum_probs=84.9

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTV   98 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~~   98 (163)
                      -+.+||.+.++.+++..+|+.+|+++..+..    +.++.  +.|.+|++ |.++..-.      .-+.+.+++ +++++
T Consensus         3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfP-GVGnfg~~~D~L~~~Gf~eplr~Yiesgk   75 (541)
T KOG0623|consen    3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIFP-GVGNFGPAMDVLNRTGFAEPLRKYIESGK   75 (541)
T ss_pred             eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEeec-CcccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence            3778999999999999999999999887753    34565  68889884 44543211      123556666 58999


Q ss_pred             CEEEEehHHHHHHHH------------hCCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeece
Q 031223           99 PLFGVCMGLQCIGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQC  160 (163)
Q Consensus        99 PvLGIC~G~QlLa~a------------~Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~  160 (163)
                      |++|||.|.|.|...            +-|.|.+...    -|++||+. -.+.  .++.+|...|.+ .+|+.|++-
T Consensus        76 PfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNs-c~v~--sd~effg~~p~~-~~YFVHSyl  149 (541)
T KOG0623|consen   76 PFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNS-CQVG--SDSEFFGDVPNR-HVYFVHSYL  149 (541)
T ss_pred             CeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccc-cccC--CcccccccCCCc-eEEEEeeec
Confidence            999999999999753            1234444321    25778873 2222  145667666654 789999984

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=99.02  E-value=2.7e-09  Score=82.17  Aligned_cols=71  Identities=17%  Similarity=0.301  Sum_probs=49.8

Q ss_pred             HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC--C---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--D---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~--d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      -.++|++.|+++.++++.  ..+++.  ++|+|||+||.....  .   ...+.+.|+++ ++++|++|||.|+|+|++.
T Consensus        16 ~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~   91 (198)
T cd03130          16 NLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGES   91 (198)
T ss_pred             HHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHH
Confidence            456788999999888642  112333  499999999843311  1   11245667764 6889999999999999997


Q ss_pred             h
Q 031223          114 F  114 (163)
Q Consensus       114 ~  114 (163)
                      +
T Consensus        92 ~   92 (198)
T cd03130          92 L   92 (198)
T ss_pred             h
Confidence            5

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.96  E-value=1.8e-09  Score=86.43  Aligned_cols=92  Identities=20%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             CCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hh-----------HH
Q 031223           24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------SL   88 (163)
Q Consensus        24 ~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~-----------~~   88 (163)
                      ++||+|+.+.++ .+.....+++..|++++.+...+....+....++|+|||+||.+ ..|.   +.           +.
T Consensus         1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS-~gD~l~sg~~~a~~~~~~~~~~   79 (259)
T PF13507_consen    1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFS-YGDYLRSGAIAAARLLFNSPLM   79 (259)
T ss_dssp             --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-G-GGGTTSTTHHHHHHHCCSCCCH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccC-ccccchHHHHHHHHhhccHHHH
Confidence            368999988777 47789999999999999887542100111224899999999954 2222   11           25


Q ss_pred             HHHHHh-CC-CCCEEEEehHHHHHHHH--hCC
Q 031223           89 QTVLEL-GP-TVPLFGVCMGLQCIGEA--FGG  116 (163)
Q Consensus        89 ~~i~~~-~~-~~PvLGIC~G~QlLa~a--~Gg  116 (163)
                      +.|+++ ++ ++|+||||.|+|+|.+.  +.+
T Consensus        80 ~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~  111 (259)
T PF13507_consen   80 DAIREFLERPGGFVLGICNGFQILVELGLLPG  111 (259)
T ss_dssp             HHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT
T ss_pred             HHHHHHHhcCCCeEEEEchHhHHHHHhCcCCC
Confidence            566664 45 99999999999999886  555

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.84  E-value=8.2e-08  Score=90.25  Aligned_cols=134  Identities=13%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCC-------CHHHHh--ccCCCEEEeCCCCCCCCCCh-------
Q 031223           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDEL-------TVEELK--RKNPRGVLISPGPGAPQDSG-------   85 (163)
Q Consensus        23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~-------~~~~~~--~~~~dgvvl~GG~~~~~d~~-------   85 (163)
                      .++||+|+.+.+++ .....+++++.|++++.+...+.       +.+.+.  ..++++|+++||.+ ..|..       
T Consensus       976 ~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFS-yGD~l~~~~~~~ 1054 (1239)
T TIGR01857       976 EKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFS-AGDEPDGSAKFI 1054 (1239)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccC-cccccchhHHHH
Confidence            46899999987774 66789999999998887764321       112221  13899999999954 33321       


Q ss_pred             -------hHHHHHHH-hCCCCCEEEEehHHHHHHHH--h-CCe----------eeeCCCc-ccccceeEEEeCCCCcCcc
Q 031223           86 -------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA--F-GGK----------IVRSPLG-VMHGKSSLVYYDEKGEDGL  143 (163)
Q Consensus        86 -------~~~~~i~~-~~~~~PvLGIC~G~QlLa~a--~-Gg~----------v~~~~~~-~e~G~~~~i~~~~~~~~~l  143 (163)
                             .+.+.+.+ ++++.++||||.|+|+|...  + +++          +.+...+ .+-.|. .+++.. ..+++
T Consensus      1055 aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v-~~~v~~-~~s~~ 1132 (1239)
T TIGR01857      1055 AAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIV-RTRIAS-TNSPW 1132 (1239)
T ss_pred             HHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeee-EEEECC-CCChh
Confidence                   13445555 37899999999999999885  1 232          2222211 121232 344443 36788


Q ss_pred             ccCCC--CceEEeeeeec
Q 031223          144 LAGLS--KYVSISCYNIQ  159 (163)
Q Consensus       144 f~~lp--~~~~v~~~H~~  159 (163)
                      ++++.  +.+.+.-.|++
T Consensus      1133 ~~~~~~g~~~~ipvaHgE 1150 (1239)
T TIGR01857      1133 LSGVSVGDIHAIPVSHGE 1150 (1239)
T ss_pred             HhcCCCCCEEEEEeEcCC
Confidence            87764  45777777765

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=98.83  E-value=4.3e-08  Score=76.57  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             HHHHHHHcCCEEEEEeCCC--------------------------------CCHHHHhccCCCEEEeCCCCCCC---CC-
Q 031223           40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-   83 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~--------------------------------~~~~~~~~~~~dgvvl~GG~~~~---~d-   83 (163)
                      ..+.|++.|++++++.+..                                .+++++...+||+|+|+||.+..   .| 
T Consensus        25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~  104 (217)
T PRK11780         25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF  104 (217)
T ss_pred             HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence            6688999999999876431                                11223334579999999996532   11 


Q ss_pred             ---------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223           84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        84 ---------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G  115 (163)
                               ...+.++++++ ++++|+.+||.|.|+|+.++|
T Consensus       105 ~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~  146 (217)
T PRK11780        105 AVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG  146 (217)
T ss_pred             cccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence                     23467888885 789999999999999999873

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.76  E-value=1.7e-07  Score=88.67  Aligned_cols=91  Identities=21%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC--CCCCCh-----------hHH
Q 031223           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSG-----------ISL   88 (163)
Q Consensus        23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~--~~~d~~-----------~~~   88 (163)
                      .++||+|+.+.+++ ......+++..|++++.+...+.........++++|+++||.+  +..+.+           .+.
T Consensus      1036 ~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~ 1115 (1307)
T PLN03206       1036 SKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLL 1115 (1307)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHH
Confidence            46899999887774 6678999999999887776432111111123899999999963  222222           134


Q ss_pred             HHHHHh--CCCCCEEEEehHHHHHHHH
Q 031223           89 QTVLEL--GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        89 ~~i~~~--~~~~PvLGIC~G~QlLa~a  113 (163)
                      +.++++  +++.++||||.|+|+|+..
T Consensus      1116 ~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1116 QQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             HHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence            555553  4689999999999999885

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.74  E-value=1.5e-07  Score=89.39  Aligned_cols=135  Identities=15%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             CCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hh-----------
Q 031223           22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------   86 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~-----------   86 (163)
                      .+++||+|+.+.+++ ......+++..|+++..+...+.........+|++++++||.+ ..|.   +.           
T Consensus      1053 ~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFS-ygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735      1053 GVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFS-YGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCC-CccchhHHHHHHHHHHhChH
Confidence            356899999887774 6678899999999888776532211121123799999999954 3332   11           


Q ss_pred             HHHHHHH-h-CCCCCEEEEehHHHHHHHH---hCCe-----eeeCCCc-ccccceeEEEeCCCCcCccccCCC-CceEEe
Q 031223           87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLS-KYVSIS  154 (163)
Q Consensus        87 ~~~~i~~-~-~~~~PvLGIC~G~QlLa~a---~Gg~-----v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp-~~~~v~  154 (163)
                      +.+.+++ + +++.++||||.|+|+|+.-   ++|.     ..+...+ .|--|. .+++.. ..+++|+++. ..+.++
T Consensus      1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~-~~~v~~-s~s~~~~~~~g~~l~~~ 1209 (1310)
T TIGR01735      1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVA-SVRVGE-SPSIMLRGMAGSRLPVA 1209 (1310)
T ss_pred             HHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeee-EEEECC-CCChhhhhcCCCEEEEE
Confidence            2455555 3 6889999999999999943   3332     3333222 222333 455544 2577777664 346777


Q ss_pred             eeeec
Q 031223          155 CYNIQ  159 (163)
Q Consensus       155 ~~H~~  159 (163)
                      -.|++
T Consensus      1210 vaHgE 1214 (1310)
T TIGR01735      1210 VAHGE 1214 (1310)
T ss_pred             eEcCC
Confidence            77755

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.65  E-value=6.2e-07  Score=85.28  Aligned_cols=131  Identities=17%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCH--HHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPGAPQDS---G-----------   85 (163)
Q Consensus        23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~--~~~~~~~~dgvvl~GG~~~~~d~---~-----------   85 (163)
                      .++||+|+.+.+++ ......+++..|++++.+...+...  ..+  .++++++++||.+ ..|.   +           
T Consensus      1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l--~~~~~l~~~GGFS-~gD~lgsg~~~a~~~~~n~ 1110 (1290)
T PRK05297       1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTL--EDFKGLVACGGFS-YGDVLGAGEGWAKSILFNP 1110 (1290)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCCh--hhCcEEEECCccC-CcccchHHHHHHHHhhccH
Confidence            45799999887774 6678999999999988776432211  123  3799999999953 3332   1           


Q ss_pred             hHHHHHHH-h-CCCCCEEEEehHHHHHHHHhC-----C----eeeeCCCc-ccccceeEEEeCCCCcCccccCCC-CceE
Q 031223           86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEAFG-----G----KIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLS-KYVS  152 (163)
Q Consensus        86 ~~~~~i~~-~-~~~~PvLGIC~G~QlLa~a~G-----g----~v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp-~~~~  152 (163)
                      .+.+.+++ + +++.++||||.|+|+|... |     .    ++.+...+ .|--|. .+++.. .++++|+++. ..+.
T Consensus      1111 ~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l-g~l~p~~~~~p~l~~N~s~rfesr~~-~~~v~~-~~s~~~~~~~g~~l~ 1187 (1290)
T PRK05297       1111 RLRDQFEAFFARPDTFALGVCNGCQMMSNL-KEIIPGAEHWPRFVRNRSEQFEARFS-LVEVQE-SPSIFLQGMAGSRLP 1187 (1290)
T ss_pred             HHHHHHHHHHhCCCceEEEEcHHHHHHHHh-CCccCCCCCCCeEeecCCCCeEEeee-EEEECC-CCChhHhhcCCCEEE
Confidence            13455556 3 6789999999999999986 3     1    12222211 122232 455543 2677887664 4467


Q ss_pred             Eeeeeec
Q 031223          153 ISCYNIQ  159 (163)
Q Consensus       153 v~~~H~~  159 (163)
                      ++-.|++
T Consensus      1188 ~~vaHge 1194 (1290)
T PRK05297       1188 IAVAHGE 1194 (1290)
T ss_pred             EEEEcCc
Confidence            7777764

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=98.63  E-value=2.6e-07  Score=72.03  Aligned_cols=76  Identities=17%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             HHHHHHHcCCEEEEEeCCC--------------------------------CCHHHHhccCCCEEEeCCCCCCC---CC-
Q 031223           40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-   83 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~--------------------------------~~~~~~~~~~~dgvvl~GG~~~~---~d-   83 (163)
                      ..+.|++.|+++++..+..                                .+++++...+||+|+|+||.+..   .| 
T Consensus        22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~  101 (213)
T cd03133          22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF  101 (213)
T ss_pred             HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence            5678899999998876521                                12233333479999999995432   11 


Q ss_pred             ---------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223           84 ---------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        84 ---------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G  115 (163)
                               ...+.++++++ ++++|+.+||.|.++|+.+.+
T Consensus       102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133         102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence                     23567888885 889999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.62  E-value=1.3e-07  Score=81.62  Aligned_cols=79  Identities=18%  Similarity=0.327  Sum_probs=50.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCC-CCCC-hhHHHHHHHhCCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~-~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      |+|-|+...     +..++++..|. .++++..+  +.+++.  ++|+|||+||... ..+. ..+.+.++++  ++|+|
T Consensus         1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl   69 (476)
T PRK06278          1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII   69 (476)
T ss_pred             CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence            357777654     33455666665 56665432  345665  7999999997421 1111 1234445444  79999


Q ss_pred             EEehHHHHHHHHh
Q 031223          102 GVCMGLQCIGEAF  114 (163)
Q Consensus       102 GIC~G~QlLa~a~  114 (163)
                      |||.|||||++..
T Consensus        70 GICgG~QmLg~~~   82 (476)
T PRK06278         70 GICSGFQILSEKI   82 (476)
T ss_pred             EEcHHHHhccccc
Confidence            9999999999875

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.60  E-value=3.4e-07  Score=61.01  Aligned_cols=73  Identities=26%  Similarity=0.481  Sum_probs=53.7

Q ss_pred             HHHHHHHHHcCCEEEEEeCCCCCHH-HHhccCCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~~~~~-~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL  110 (163)
                      ..+.+.+++.++++.+++....... .....++|++|++||.......   ....+++++ .++++|++|+|.|+|++
T Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            5678889999999999986532111 0112379999999997765543   455677776 46789999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK00784 cobyric acid synthase; Provisional

Probab=98.57  E-value=1.3e-07  Score=81.85  Aligned_cols=83  Identities=19%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             CeEEEEEC-CCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-----hHHHHHHH-hCC
Q 031223           25 NPIIVIDN-YDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGP   96 (163)
Q Consensus        25 ~~Ilvid~-~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-----~~~~~i~~-~~~   96 (163)
                      .+|+|+.. ...+..+ .+.|++ .|++++.+++.    ++++  ++|+|+|+||.....+..     .+.+.|++ .++
T Consensus       252 ~~i~v~~~~~a~~f~n-l~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~  324 (488)
T PRK00784        252 LRIAVIRLPRISNFTD-FDPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARR  324 (488)
T ss_pred             eEEEEEeCCCcCCccC-hHHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHc
Confidence            68999972 2221233 355665 89999888653    3454  789999999864333211     14566666 478


Q ss_pred             CCCEEEEehHHHHHHHHh
Q 031223           97 TVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (163)
                      ++|++|||.|+|+|++.+
T Consensus       325 g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        325 GGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             CCeEEEECHHHHHHhhhc
Confidence            999999999999999987

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.56  E-value=4.2e-07  Score=68.51  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=36.9

Q ss_pred             CCCEEEeCCCCCCCC--CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~--d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      +||+|+++||++...  ....+.+++++ +++++|+.|||.|.++|+.+
T Consensus        76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            689999999974321  23456788888 47899999999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=98.49  E-value=6e-07  Score=66.50  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             HHHHHHHHcCCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEE
Q 031223           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL  101 (163)
                      .+.+.|++.|+++.++....              .+++++...+||+|+++||+...  ...+.+.++++++ ++++|+.
T Consensus        17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~   96 (166)
T TIGR01382        17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA   96 (166)
T ss_pred             HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence            35678888898888775431              11222222369999999996521  1234578888885 7889999


Q ss_pred             EEehHHHHHHHH
Q 031223          102 GVCMGLQCIGEA  113 (163)
Q Consensus       102 GIC~G~QlLa~a  113 (163)
                      +||.|.++|+.+
T Consensus        97 ~ic~G~~~La~a  108 (166)
T TIGR01382        97 AICHGPQLLISA  108 (166)
T ss_pred             EEChHHHHHHhc
Confidence            999999999986

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.44  E-value=7.7e-07  Score=56.77  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=52.2

Q ss_pred             HHHHHHHHHcCCEEEEEeCCCCCHH-HHhccCCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223           38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~~~~~-~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL  110 (163)
                      ..+.+.+++.++.+.+++....... .....++|++|++||+......   ....+++.+ ..+++|++|+|.|+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            4677888889999998876532211 1123489999999998766543   445566665 46789999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.42  E-value=8.8e-07  Score=76.10  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             CeEEEEECCCC-hH-HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-----ChhHHHHHHHh-CC
Q 031223           25 NPIIVIDNYDS-FT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-----SGISLQTVLEL-GP   96 (163)
Q Consensus        25 ~~Ilvid~~~~-~~-~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-----~~~~~~~i~~~-~~   96 (163)
                      .+|+|+-.... |. ..=.+.|++.|+++..+++.  ..++++  ++|+|||+||.....+     ...+.+.|+++ ++
T Consensus       246 ~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~  321 (451)
T PRK01077        246 VRIAVARDAAFNFYYPENLELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAA  321 (451)
T ss_pred             ceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHc
Confidence            58999954322 22 12346678899998887642  112343  7999999999643211     12346777774 78


Q ss_pred             CCCEEEEehHHHHHHHHh
Q 031223           97 TVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (163)
                      ++|++|||-|+|+|++.+
T Consensus       322 g~~i~aiCgG~~~L~~~i  339 (451)
T PRK01077        322 GKPIYAECGGLMYLGESL  339 (451)
T ss_pred             CCCEEEEcHHHHHHHhhh
Confidence            899999999999999987

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.41  E-value=1.1e-06  Score=68.30  Aligned_cols=88  Identities=11%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             CCCCeEEEEECCC----ChHHHHHHHHHHc-CCEEEEEeCCC-CC-HHHHhccCCCEEEeCCCCCCCCCC------hhHH
Q 031223           22 NNKNPIIVIDNYD----SFTYNLCQYMGEL-GYHFEVYRNDE-LT-VEELKRKNPRGVLISPGPGAPQDS------GISL   88 (163)
Q Consensus        22 ~~~~~Ilvid~~~----~~~~~~~~~l~~~-G~~~~v~~~~~-~~-~~~~~~~~~dgvvl~GG~~~~~d~------~~~~   88 (163)
                      +...+|++|-...    .+..++.++++++ |++++.+.... .. .+.+.  ++|+|+++||.  ....      ..+.
T Consensus        29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG~--~~~~~~~l~~~~l~  104 (212)
T cd03146          29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGGN--TFNLLAQWREHGLD  104 (212)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCch--HHHHHHHHHHcCHH
Confidence            4567899995433    3456688889999 99888776321 11 23343  79999999872  2211      1245


Q ss_pred             HHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           89 QTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        89 ~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      +.+++ +++++|++|+|.|+|++...
T Consensus       105 ~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146         105 AILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            56666 46889999999999999885

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=98.37  E-value=2.3e-06  Score=67.45  Aligned_cols=74  Identities=11%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             HHHHHHHcCCEEEEEeCCCC------------------------------------CHHHHhccCCCEEEeCCCCCCCC-
Q 031223           40 LCQYMGELGYHFEVYRNDEL------------------------------------TVEELKRKNPRGVLISPGPGAPQ-   82 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~------------------------------------~~~~~~~~~~dgvvl~GG~~~~~-   82 (163)
                      ..+.|++.|+++++..+...                                    .++++...+||+|+|+||.+... 
T Consensus        30 p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~d  109 (231)
T cd03147          30 PFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFD  109 (231)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchhhh
Confidence            56788899999998764210                                    12222334899999999965433 


Q ss_pred             --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                        +...+.++++++ ++++|+.+||.|.++|+.+
T Consensus       110 l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147         110 FPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence              334567888885 7899999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=98.36  E-value=1.9e-06  Score=62.43  Aligned_cols=89  Identities=18%  Similarity=0.081  Sum_probs=60.5

Q ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC---CCC
Q 031223           25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~---~d~   84 (163)
                      ++|+|+=..+..   ...+.+.|+..|+++.++..+..              ++++....+||+++|+||....   .+.
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~   81 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS   81 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence            456666432221   23477888889999998865421              1112222258999999986542   234


Q ss_pred             hhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           85 GISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        85 ~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      ..+.+++++ ..+++|+.+||-|..+|+.+
T Consensus        82 ~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          82 GRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             hHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            567888988 47899999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=98.34  E-value=3e-06  Score=62.70  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             HHHHHHHHcCCEEEEEeCC-CC---------------CHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCC
Q 031223           39 NLCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~-~~---------------~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~P   99 (163)
                      .+.+.|++.|+++.++..+ ..               ++++....+||+|+++||+...  .+...+.++|+++ ++++|
T Consensus        17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~   96 (165)
T cd03134          17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP   96 (165)
T ss_pred             HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence            3667788889998888654 21               1122222368999999997422  1234578888884 78999


Q ss_pred             EEEEehHHHHHHHH
Q 031223          100 LFGVCMGLQCIGEA  113 (163)
Q Consensus       100 vLGIC~G~QlLa~a  113 (163)
                      +.+||.|.++|+.+
T Consensus        97 i~~ic~G~~~La~a  110 (165)
T cd03134          97 VAAICHGPWVLISA  110 (165)
T ss_pred             EEEEchHHHHHHhc
Confidence            99999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=98.34  E-value=4.2e-06  Score=68.08  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCEEEE--EeCCC---------------CCHHHHhccCCCEEEeCCCCCCCCCC
Q 031223           25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v--~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~d~   84 (163)
                      .+|+|++.-..-   ...+.+.|......+++  +....               .+++++....+||+||+|.|-.--+.
T Consensus        35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F  114 (298)
T PF04204_consen   35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF  114 (298)
T ss_dssp             EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred             eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence            689999886542   22355555554444443  32211               23444555689999999998643221


Q ss_pred             ------hhHHHHHHHh-CCCCCEEEEehHHHH-HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223           85 ------GISLQTVLEL-GPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY  156 (163)
Q Consensus        85 ------~~~~~~i~~~-~~~~PvLGIC~G~Ql-La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~  156 (163)
                            +++.+++.-. .+..+.|.||.|+|. |...+|-.-...+. --.|... -.+.. ..+||++|+++.|.+-++
T Consensus       115 e~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~-KlfGVf~-~~~~~-~~~pLl~Gfdd~f~~PhS  191 (298)
T PF04204_consen  115 EEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE-KLFGVFE-HRVLD-PDHPLLRGFDDTFFAPHS  191 (298)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE-EEEEEEE-EEES--SS-GGGTT--SEEEEEEE
T ss_pred             ccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC-cceecee-eeccC-CCChhhcCCCccccCCcc
Confidence                  1223333222 355899999999999 67778887776652 2346652 23222 268999999998888766


Q ss_pred             eec
Q 031223          157 NIQ  159 (163)
Q Consensus       157 H~~  159 (163)
                      -.-
T Consensus       192 R~t  194 (298)
T PF04204_consen  192 RYT  194 (298)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            443

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=98.33  E-value=7.1e-06  Score=62.55  Aligned_cols=90  Identities=10%  Similarity=0.063  Sum_probs=58.9

Q ss_pred             CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHhccCCCEEEeCCCCCCC
Q 031223           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP   81 (163)
Q Consensus        23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~~dgvvl~GG~~~~   81 (163)
                      +++||+|+-.. .|    .....+.|++.|+++.+.....                 .+++++...++|.|+|+||....
T Consensus         1 ~~~~~~il~~~-g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~   79 (196)
T PRK11574          1 MSASALVCLAP-GSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA   79 (196)
T ss_pred             CCceEEEEeCC-CcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh
Confidence            34677777432 22    2236678888888887764320                 11223222369999999986433


Q ss_pred             C---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           82 Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        82 ~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .   +...+.++++++ ++++++.+||-|..+|+..
T Consensus        80 ~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~  115 (196)
T PRK11574         80 ECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP  115 (196)
T ss_pred             hhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence            2   334578899885 7899999999999976543

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.28  E-value=1.9e-06  Score=73.96  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             CeEEEEECCC-Ch-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-----hhHHHHHHHh-CC
Q 031223           25 NPIIVIDNYD-SF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLEL-GP   96 (163)
Q Consensus        25 ~~Ilvid~~~-~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-----~~~~~~i~~~-~~   96 (163)
                      .+|+|+.... .| -..=.+.|++.|+++..+++-  ..++++  ++|+|+|+||.....+.     ..+.+.|+++ ++
T Consensus       245 ~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~  320 (449)
T TIGR00379       245 VRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQ  320 (449)
T ss_pred             cEEEEEechhhceeHHHHHHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence            5899994321 11 112345688889998887652  112343  79999999996432221     1245666664 78


Q ss_pred             CCCEEEEehHHHHHHHHh
Q 031223           97 TVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (163)
                      ++|++|+|-|+|+|++.+
T Consensus       321 G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       321 GLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             CCCEEEEcHHHHHHHhhh
Confidence            899999999999999987

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=98.27  E-value=4.4e-06  Score=63.26  Aligned_cols=90  Identities=13%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHhccCCCEEEeCCCCCCC-CC
Q 031223           25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAP-QD   83 (163)
Q Consensus        25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~~dgvvl~GG~~~~-~d   83 (163)
                      ++|+++-+.+-   ......+.|++.|+++++.....                 ...++....+||+++++||...+ ..
T Consensus         3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~   82 (188)
T COG0693           3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYL   82 (188)
T ss_pred             ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhc
Confidence            45666643221   12246788999999887765431                 01111222489999999994433 22


Q ss_pred             C--hhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223           84 S--GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        84 ~--~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~  114 (163)
                      .  ..+.++++++ ++++||.+||.|.++|+.+-
T Consensus        83 ~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag  116 (188)
T COG0693          83 RPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG  116 (188)
T ss_pred             cCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence            2  4678888885 78999999999999998764

>PHA03366 FGAM-synthase; Provisional

Probab=98.21  E-value=9.8e-06  Score=77.30  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223           21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G-----------   85 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~-----------   85 (163)
                      +..++||+|+.+.+++ ......++...|+++..+...+...... ..++++|+++||.+ ..|.   +           
T Consensus      1025 ~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS-~gD~l~~~~~~a~~il~n~ 1102 (1304)
T PHA03366       1025 PDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSG-AEDSYTGARAAVAALLSNP 1102 (1304)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCC-CcccccHHHHHHHHhhhch
Confidence            3456899999887674 6678999999999988776532211121 23799999999954 3332   1           


Q ss_pred             hHHHHHHHh--CCCCCEEEEeh-HHHHHHHH
Q 031223           86 ISLQTVLEL--GPTVPLFGVCM-GLQCIGEA  113 (163)
Q Consensus        86 ~~~~~i~~~--~~~~PvLGIC~-G~QlLa~a  113 (163)
                      .+.+.++++  +++.++||||. |+|+|+..
T Consensus      1103 ~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366       1103 AVRDALLRFLNRPDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred             HHHHHHHHHHhCCCCeEEEeCcHHHHHHHHc
Confidence            234556664  56899999998 99999884

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=98.19  E-value=9.9e-06  Score=60.51  Aligned_cols=75  Identities=11%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             HHHHHHHHc-CCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCC-CCCChhHHHHHHHh-CCCCCEE
Q 031223           39 NLCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLEL-GPTVPLF  101 (163)
Q Consensus        39 ~~~~~l~~~-G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~-~~d~~~~~~~i~~~-~~~~PvL  101 (163)
                      ...+.|++. ++++.++..+.              .++++....++|.++|+||+.. ......+.++++++ ++++++.
T Consensus        16 ~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~   95 (170)
T cd03140          16 YLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVA   95 (170)
T ss_pred             HHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEE
Confidence            355667664 67777765431              1233332236999999999642 22334578888885 7889999


Q ss_pred             EEehHHHHHHHH
Q 031223          102 GVCMGLQCIGEA  113 (163)
Q Consensus       102 GIC~G~QlLa~a  113 (163)
                      +||-|.++|+.+
T Consensus        96 aic~G~~~La~a  107 (170)
T cd03140          96 AICGATLALARA  107 (170)
T ss_pred             EEChHHHHHHHC
Confidence            999999999996

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.15  E-value=1.3e-05  Score=68.52  Aligned_cols=84  Identities=15%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             CeEEEEECCC-C--hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHH-hCC
Q 031223           25 NPIIVIDNYD-S--FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGP   96 (163)
Q Consensus        25 ~~Ilvid~~~-~--~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~-~~~   96 (163)
                      .+|+|-.-.. +  |..++ +.|++. +++..+++-  ..++++  ++|+|+|+||.....+..    ...+.|++ .++
T Consensus       234 ~~iavA~D~AF~FyY~enl-~~L~~~-aelv~fSPl--~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~  307 (433)
T PRK13896        234 PTVAVARDAAFCFRYPATI-ERLRER-ADVVTFSPV--AGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAAD  307 (433)
T ss_pred             CeEEEEEcCccceeCHHHH-HHHHhc-CcEEEEcCC--CCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHC
Confidence            5898884211 1  24443 567777 777766652  123444  789999999964433211    12355666 478


Q ss_pred             CCCEEEEehHHHHHHHHh
Q 031223           97 TVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (163)
                      ++|++|+|-|+|+|++.+
T Consensus       308 G~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        308 GLPVLGECGGLMALAESL  325 (433)
T ss_pred             CCcEEEEehHHHHhhccc
Confidence            999999999999999986

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.13  E-value=2e-06  Score=63.82  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             CCCEEEeCCCCCCCCCCh-----hHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223           68 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~~-----~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      ++|+|+|+||.....+..     .+.+.|++ .++++||+|||-|+|+|.+.+=
T Consensus         7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            799999988864433322     24677777 4789999999999999999863

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR01001 metA homoserine O-succinyltransferase

Probab=98.11  E-value=2.2e-05  Score=63.64  Aligned_cols=129  Identities=13%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             CCeEEEEECCCC---hHHHHHHHHHHcCCE--EEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCCC-
Q 031223           24 KNPIIVIDNYDS---FTYNLCQYMGELGYH--FEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAPQ-   82 (163)
Q Consensus        24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~--~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~-   82 (163)
                      ..+|+|++.-..   ....+.|.|......  ++.+....               .+++++....+||+||+|.|-.-- 
T Consensus        35 pL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~  114 (300)
T TIGR01001        35 PLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVP  114 (300)
T ss_pred             ceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCC
Confidence            368999987543   233477777554444  44333221               345556666899999999986422 


Q ss_pred             -CC----hhHHHHHHHh-CCCCCEEEEehHHHHH-HHHhCCeeeeCCCcccccce-eEEEeCCCCcCccccCCCCceEEe
Q 031223           83 -DS----GISLQTVLEL-GPTVPLFGVCMGLQCI-GEAFGGKIVRSPLGVMHGKS-SLVYYDEKGEDGLLAGLSKYVSIS  154 (163)
Q Consensus        83 -d~----~~~~~~i~~~-~~~~PvLGIC~G~QlL-a~a~Gg~v~~~~~~~e~G~~-~~i~~~~~~~~~lf~~lp~~~~v~  154 (163)
                       +.    +++.+++.-. .+-...|.||.|+|.. ...+|-.=...+. --.|.. |.+.  .  .+||++|+++.|.+-
T Consensus       115 FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~-KlfGVf~h~~~--~--~~pL~rGfdd~f~~P  189 (300)
T TIGR01001       115 FEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE-KLSGVYKHDIA--P--DSLLLRGFDDFFLAP  189 (300)
T ss_pred             cccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC-ceEEeecCccC--C--CCccccCCCCccccC
Confidence             11    1233333322 4668999999999994 5556765555542 234643 2232  2  689999999888876


Q ss_pred             eee
Q 031223          155 CYN  157 (163)
Q Consensus       155 ~~H  157 (163)
                      ++-
T Consensus       190 hSR  192 (300)
T TIGR01001       190 HSR  192 (300)
T ss_pred             CCC
Confidence            654

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=98.11  E-value=1.8e-05  Score=62.45  Aligned_cols=47  Identities=19%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             cCCCEEEeCCCCCCCCC---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           67 KNPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        67 ~~~dgvvl~GG~~~~~d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+||+|+++||.+...+   ...+.++++++ ++++||..||.|.+.|..+
T Consensus        95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            47999999999654443   34567788885 8899999999999988765

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=98.09  E-value=2.8e-05  Score=57.05  Aligned_cols=75  Identities=11%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCC---CCChhHHHHHHHh-CCCCC
Q 031223           39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~---~d~~~~~~~i~~~-~~~~P   99 (163)
                      .+.+.|+..|+++.++.++.               .++++....+||.++|+||+...   .+.+.+.++++++ .++++
T Consensus        16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~   95 (163)
T cd03135          16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL   95 (163)
T ss_pred             HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence            46778888888888775431               11222222479999999997322   2345678888884 78899


Q ss_pred             EEEEehHHHHHHHH
Q 031223          100 LFGVCMGLQCIGEA  113 (163)
Q Consensus       100 vLGIC~G~QlLa~a  113 (163)
                      +.+||-|..+|+.+
T Consensus        96 i~~ic~g~~~La~a  109 (163)
T cd03135          96 IAAICAAPAVLAKA  109 (163)
T ss_pred             EEEEchhHHHHHHc
Confidence            99999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.09  E-value=2.3e-05  Score=74.42  Aligned_cols=88  Identities=19%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCC---h-----------h
Q 031223           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDS---G-----------I   86 (163)
Q Consensus        23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~---~-----------~   86 (163)
                      ...||+|+.+.+++ ......+++..|+++..+...+.. -..+  .+++|+++.||.+ ..|.   +           .
T Consensus       928 ~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l--~~f~glv~~Ggfs-y~D~lgsg~~~a~~il~n~~ 1004 (1202)
T TIGR01739       928 PRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFL--DTFSGLIIGGASG-TLDSEVGARALAAALLRNQA 1004 (1202)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCch--hheEEEEEcCcCC-CCccchHHHHHHHHhhcchH
Confidence            35689999887664 667899999999998877654221 1123  3799999987744 3332   1           1


Q ss_pred             HHHHHHHh--CCCCCEEEEeh-HHHHHHHH
Q 031223           87 SLQTVLEL--GPTVPLFGVCM-GLQCIGEA  113 (163)
Q Consensus        87 ~~~~i~~~--~~~~PvLGIC~-G~QlLa~a  113 (163)
                      +.+.++++  +++.++||||. |+|+|+..
T Consensus      1005 ~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739      1005 FLRDLLTFLNRPDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred             HHHHHHHHHhCCCceEEEeCcHHHHHHHHc
Confidence            34555553  56899999998 99999884

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.08  E-value=3.9e-06  Score=72.58  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             CeEEEEEC-C-CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-----hHHHHHHHh-CC
Q 031223           25 NPIIVIDN-Y-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLEL-GP   96 (163)
Q Consensus        25 ~~Ilvid~-~-~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-----~~~~~i~~~-~~   96 (163)
                      .+|+|+.. . ..|. + .+.|++.  +...+.+.   .++++  ++|+|+|+||.....+..     .+.+.|+++ ++
T Consensus       248 ~~Iav~~~~~~~nf~-~-~~~L~~~--~~~~f~~~---~~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~  318 (475)
T TIGR00313       248 IRIGVVRLPRISNFT-D-FEPLRYE--AFVKFLDL---DDSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKE  318 (475)
T ss_pred             cEEEEEcCCcccCcc-C-hHHHhhC--CCeEEeCC---ccccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHc
Confidence            68999962 1 1233 2 3445544  22222221   23444  789999988863322211     135666664 68


Q ss_pred             CCCEEEEehHHHHHHHHh
Q 031223           97 TVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~  114 (163)
                      +.||+|||-|+|+|++.+
T Consensus       319 G~pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       319 GGIVIGICGGYQMLGKEL  336 (475)
T ss_pred             CCcEEEEcHHHHHhhhhh
Confidence            899999999999999975

>PRK04155 chaperone protein HchA; Provisional

Probab=98.07  E-value=1.7e-05  Score=64.55  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=53.7

Q ss_pred             HHHHHHHcCCEEEEEeCCCCC-------------------------------HHHHh------ccCCCEEEeCCCCCCCC
Q 031223           40 LCQYMGELGYHFEVYRNDELT-------------------------------VEELK------RKNPRGVLISPGPGAPQ   82 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------~~~~~------~~~~dgvvl~GG~~~~~   82 (163)
                      ..+.|++.|+++++..+....                               ++++.      ..+||+|+|+||.+...
T Consensus        82 P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~  161 (287)
T PRK04155         82 PMYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI  161 (287)
T ss_pred             HHHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH
Confidence            567899999999988652100                               22221      35899999999976544


Q ss_pred             C---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 D---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 d---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +   ...+.++++++ ++++||.+||.|.++|..+
T Consensus       162 dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        162 GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            3   33467788874 7899999999999987764

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=98.05  E-value=2e-05  Score=61.55  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=38.4

Q ss_pred             cCCCEEEeCCCCCCCC---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           67 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        67 ~~~dgvvl~GG~~~~~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+||+|+|+||++...   +...+.++++++ ++++++.+||.|.++|+.+
T Consensus        89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a  139 (221)
T cd03141          89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV  139 (221)
T ss_pred             hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence            4799999999975432   345678899885 7899999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.04  E-value=2.7e-05  Score=59.05  Aligned_cols=82  Identities=20%  Similarity=0.293  Sum_probs=53.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHH-hCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTV   98 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~-~~~~~   98 (163)
                      |+|-|+-.-+.+.. =.+.++++ |+++..++    .+++++  +.||+||+||-+..-    ....+.+.+++ ..+++
T Consensus         1 m~IGVLalQG~v~E-H~~~l~~~~~~e~~~Vk----~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~   73 (194)
T COG0311           1 MKIGVLALQGAVEE-HLEALEKAGGAEVVEVK----RPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGL   73 (194)
T ss_pred             CeEEEEEecccHHH-HHHHHHhhcCCceEEEc----CHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCC
Confidence            35666644333332 23567777 47766664    256765  799999999965321    11123455555 57899


Q ss_pred             CEEEEehHHHHHHHH
Q 031223           99 PLFGVCMGLQCIGEA  113 (163)
Q Consensus        99 PvLGIC~G~QlLa~a  113 (163)
                      |++|-|-|+-+||.-
T Consensus        74 Pv~GTCAGlIlLake   88 (194)
T COG0311          74 PVFGTCAGLILLAKE   88 (194)
T ss_pred             ceEEechhhhhhhhh
Confidence            999999999999963

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.93  E-value=3.1e-05  Score=61.19  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=67.5

Q ss_pred             ChhhHhhHHhhhcCCCCCeEEEEECCC------ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC
Q 031223            8 PISKSLYLDDKKSKNNKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP   81 (163)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~Ilvid~~~------~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~   81 (163)
                      +.+|..++.+.-.  ..++|++|-..+      .|...+.++++.+|+++..++..+...+.+.  +.|+|+++||....
T Consensus        17 l~~~~~~~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~   92 (233)
T PRK05282         17 LEHALPLIAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQ   92 (233)
T ss_pred             HHHHHHHHHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHH
Confidence            3556666666533  457899994432      2455677888899999887764311122243  79999999984321


Q ss_pred             C----CChhHHHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223           82 Q----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        82 ~----d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      .    ....+.+.|++ +++++|+.|.|-|+-+++...+
T Consensus        93 l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282         93 LLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             HHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence            1    11124566665 5788999999999988776544

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.89  E-value=7.9e-06  Score=62.16  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=43.9

Q ss_pred             HHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHHh-CCC-CCEEEEehHHHHHHHH
Q 031223           41 CQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGLQCIGEA  113 (163)
Q Consensus        41 ~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~~-~~~-~PvLGIC~G~QlLa~a  113 (163)
                      .+.|+.+|.+...++.    .+++.  ++||+||+||-++.-    ....+.+.++++ .++ +|++|.|-||-+||..
T Consensus        12 ~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~   84 (188)
T PF01174_consen   12 IRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKE   84 (188)
T ss_dssp             HHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEE
T ss_pred             HHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhh
Confidence            4678889998876653    46665  799999999954321    111245667774 454 9999999999999874

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=97.86  E-value=3.1e-05  Score=66.58  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CCCeEEEEECC--CChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh-----HHHHHHH-
Q 031223           23 NKNPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-   93 (163)
Q Consensus        23 ~~~~Ilvid~~--~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~-----~~~~i~~-   93 (163)
                      ...+|+|+..-  +.|+.  .+.|+. .++.+.++++.    +++.  ++|.+||+|+-....|...     +.+.+.+ 
T Consensus       250 ~~i~Iav~~lp~isNFtD--~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~  321 (486)
T COG1492         250 RAIRIAVIRLPRISNFTD--FDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEY  321 (486)
T ss_pred             CceEEEEecCCCcccccc--chhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHH
Confidence            44688888432  21222  233443 37778777653    3444  5899999776544444321     3334444 


Q ss_pred             hCCCCCEEEEehHHHHHHHHh
Q 031223           94 LGPTVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        94 ~~~~~PvLGIC~G~QlLa~a~  114 (163)
                      ..++.|++|||-|+|||...+
T Consensus       322 ~~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         322 ARKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             HhCCCCEEEEcchHHhhhhhh
Confidence            567899999999999998763

>TIGR01383 not_thiJ DJ-1 family protein

Probab=97.84  E-value=8e-05  Score=55.65  Aligned_cols=75  Identities=11%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             HHHHHHHHcCCEEEE--EeCCC---------------CCHHHHhccCCCEEEeCCCCCCC---CCChhHHHHHHHh-CCC
Q 031223           39 NLCQYMGELGYHFEV--YRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPT   97 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v--~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~---~d~~~~~~~i~~~-~~~   97 (163)
                      .+.+.|+..|+++++  +..+.               .++++....+||.|+|+||....   .+.+.+.++++++ .++
T Consensus        17 ~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~   96 (179)
T TIGR01383        17 ITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG   96 (179)
T ss_pred             HHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC
Confidence            366778887866664  43320               11222222369999999985322   2345678899885 788


Q ss_pred             CCEEEEehHHHHHHHH
Q 031223           98 VPLFGVCMGLQCIGEA  113 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a  113 (163)
                      +++.+||-|..+|+.+
T Consensus        97 ~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        97 KLVAAICAAPAVLLAA  112 (179)
T ss_pred             CEEEEEChhHHHHHhc
Confidence            9999999999999997

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.82  E-value=0.00017  Score=54.32  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=38.0

Q ss_pred             CCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ++|.|+|+||....  .+...+.++++++ .+++++.+||-|.++|+.+
T Consensus        64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            79999999986543  2345678899885 7889999999999999997

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=97.75  E-value=8.8e-06  Score=59.42  Aligned_cols=54  Identities=22%  Similarity=0.436  Sum_probs=41.3

Q ss_pred             CHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           60 TVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        60 ~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +++++...+||+|||+||.+...    +...+.++++++ ++++|+.+||.|..+|+.+
T Consensus        29 ~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   29 TLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             EGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             cHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            46677666899999999976332    335678888885 7899999999999999887

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11249 katE hydroperoxidase II; Provisional

Probab=97.74  E-value=0.0001  Score=66.75  Aligned_cols=91  Identities=12%  Similarity=0.035  Sum_probs=63.3

Q ss_pred             CCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCCC---
Q 031223           23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---   82 (163)
Q Consensus        23 ~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~~---   82 (163)
                      .+.+|+||-..+..   ...+.++|++.|+.+.++.....              ++++.....||+|+|.||...+.   
T Consensus       596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~  675 (752)
T PRK11249        596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLA  675 (752)
T ss_pred             cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHh
Confidence            55788888443222   33477888999999998865311              11122223699999999865432   


Q ss_pred             CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           83 DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      .......+|++ ++..|+|.+||-|.++|+.+
T Consensus       676 ~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        676 DNGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             hCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            33457888988 57889999999999999974

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.71  E-value=7.3e-05  Score=52.76  Aligned_cols=43  Identities=14%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             CCCEEEeCCCCCCCCCC---hhHHHHHHH-hCCCCCEEEEehHHHHH
Q 031223           68 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI  110 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~---~~~~~~i~~-~~~~~PvLGIC~G~QlL  110 (163)
                      ++|.+|++||.....-.   ..-.+.|++ .++++|+||||+|+-+.
T Consensus        44 ~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          44 KTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             CCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence            79999998865432110   001556666 47889999999999655

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=97.54  E-value=7.5e-05  Score=58.11  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-----CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-----~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      +.++.+.+|+.+++.+.+..  +.++...+|.+++.||.+-.     .+...-.+.+++ +++++|+|.||-|.|+|.++
T Consensus        26 Lr~ra~~rgi~v~i~~vsl~--d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          26 LRQRAEKRGIKVEIVEVSLT--DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ehHHHHhcCCceEEEEeecC--CCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            55677778999998875421  22333479988886653211     111112344555 57899999999999999986


Q ss_pred             h
Q 031223          114 F  114 (163)
Q Consensus       114 ~  114 (163)
                      +
T Consensus       104 Y  104 (250)
T COG3442         104 Y  104 (250)
T ss_pred             e
Confidence            4

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.48  E-value=0.00062  Score=50.91  Aligned_cols=75  Identities=12%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             HHHHHHHHcC-----CEEEEEeCCCCC----------H-HHHh-ccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCC
Q 031223           39 NLCQYMGELG-----YHFEVYRNDELT----------V-EELK-RKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTV   98 (163)
Q Consensus        39 ~~~~~l~~~G-----~~~~v~~~~~~~----------~-~~~~-~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~   98 (163)
                      .+.+.|+..+     +++.++..+..+          . ..+. ...||+|||+||.+..  .....+.++++++ .+++
T Consensus        16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k   95 (183)
T cd03139          16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAK   95 (183)
T ss_pred             eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCC
Confidence            3566666666     777776543110          0 0111 1279999999996532  2334578899884 7899


Q ss_pred             CEEEEehHHHHHHHH
Q 031223           99 PLFGVCMGLQCIGEA  113 (163)
Q Consensus        99 PvLGIC~G~QlLa~a  113 (163)
                      ++.+||-|..+|+.+
T Consensus        96 ~i~aic~g~~~La~a  110 (183)
T cd03139          96 YVTSVCTGALLLAAA  110 (183)
T ss_pred             EEEEEchHHHHHHhc
Confidence            999999999999885

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=97.39  E-value=0.00072  Score=53.01  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             HHHHHHHcCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCC-CCCCC--CChhHHHHHHHh-CCCCCE
Q 031223           40 LCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLEL-GPTVPL  100 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG-~~~~~--d~~~~~~~i~~~-~~~~Pv  100 (163)
                      ..+.|++.|+++.+..++.               ....+....+||.|||+|| ++...  +...+.++++++ +.++++
T Consensus        24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLI  103 (247)
T KOG2764|consen   24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLI  103 (247)
T ss_pred             eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeE
Confidence            4688999999999886431               1122222358999999999 66533  334567888885 689999


Q ss_pred             EEEehHHHHH
Q 031223          101 FGVCMGLQCI  110 (163)
Q Consensus       101 LGIC~G~QlL  110 (163)
                      ..||.|--++
T Consensus       104 aaICaap~~a  113 (247)
T KOG2764|consen  104 AAICAAPLTA  113 (247)
T ss_pred             EEeecchHHH
Confidence            9999986333

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=97.23  E-value=0.0022  Score=49.47  Aligned_cols=91  Identities=13%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             CCCeEEEEECCC----ChHHHHHHHHHHcCCEEEEEeCCC-CCHHHH-h-ccCCCEEEeCCCCCCCC----CChhHHHHH
Q 031223           23 NKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LTVEEL-K-RKNPRGVLISPGPGAPQ----DSGISLQTV   91 (163)
Q Consensus        23 ~~~~Ilvid~~~----~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~-~-~~~~dgvvl~GG~~~~~----d~~~~~~~i   91 (163)
                      ...+|++|....    .+...+.++++++|++...+.... .+.++. . -.+.|+|+++||.....    ......+.+
T Consensus        28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i  107 (210)
T cd03129          28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI  107 (210)
T ss_pred             CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence            568899996654    355568888899999877665321 111221 1 13799999999843211    011123334


Q ss_pred             H-HhCCCCCEEEEehHHHHHHHH
Q 031223           92 L-ELGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        92 ~-~~~~~~PvLGIC~G~QlLa~a  113 (163)
                      + .+.++.|+.|+|-|+.+++..
T Consensus       108 ~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129         108 LKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             HHHHHcCCeEEEcCHHHHHhhhc
Confidence            4 356889999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=97.19  E-value=0.001  Score=52.77  Aligned_cols=77  Identities=17%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHH-----HHh--CCCCCEEEEehHH
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTV-----LEL--GPTVPLFGVCMGL  107 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i-----~~~--~~~~PvLGIC~G~  107 (163)
                      ..+++..++..|+.+..+.+++ +.+.+.  .+-..|||++||-....|.-++.+.+     .+.  ....||.|||+|+
T Consensus        79 AASYVK~aEsgGARViPli~ne-pEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGF  157 (340)
T KOG1559|consen   79 AASYVKLAESGGARVIPLIYNE-PEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGF  157 (340)
T ss_pred             HHHHHHHHHcCCceEEEEecCC-cHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhH
Confidence            3457777888899998887763 322221  23589999999944434443333332     222  3578999999999


Q ss_pred             HHHHHHh
Q 031223          108 QCIGEAF  114 (163)
Q Consensus       108 QlLa~a~  114 (163)
                      .+|....
T Consensus       158 E~lsmiI  164 (340)
T KOG1559|consen  158 ELLSMII  164 (340)
T ss_pred             HHHHHHH
Confidence            9998753

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.10  E-value=0.001  Score=50.39  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=37.2

Q ss_pred             CCCEEEeCCCCCCC-----CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAP-----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~-----~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +||.|+|+||....     .....+.++++++ .+++++.+||-|.++|+.+
T Consensus        69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            79999999986532     2234578888884 7889999999999999986

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0058  Score=48.80  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             CeEEEEECCCCh---HHHHHHHHHH--cCCEEEEEeCCC---------------CCHHHHhccCCCEEEeCCCCCCCCCC
Q 031223           25 NPIIVIDNYDSF---TYNLCQYMGE--LGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~~---~~~~~~~l~~--~G~~~~v~~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~d~   84 (163)
                      .+|+|++.-..-   ...+.|.|..  +.++++.+..+.               .++++++..++||+||+|.|-.--+.
T Consensus        36 L~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve~l~f  115 (307)
T COG1897          36 LKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVELLPF  115 (307)
T ss_pred             ceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCCcccccCc
Confidence            579999875432   2224555543  223444443321               24556666789999999998643222


Q ss_pred             hh---H--HHHHHHh--CCCCCEEEEehHHHHHHHHh-CCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223           85 GI---S--LQTVLEL--GPTVPLFGVCMGLQCIGEAF-GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY  156 (163)
Q Consensus        85 ~~---~--~~~i~~~--~~~~PvLGIC~G~QlLa~a~-Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~  156 (163)
                      ++   +  ...|.++  ..---.|-||.|+|.--.++ |-.=...+. .--|....-.+..  .++|++|+.+.|.+-++
T Consensus       116 eeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~GVy~h~~l~p--~~~l~rGfdd~f~~PhS  192 (307)
T COG1897         116 EEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE-KLSGVYKHDILSP--HSLLTRGFDDSFLAPHS  192 (307)
T ss_pred             hhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch-hhhceeeccccCc--cchhhccCCccccCccc
Confidence            11   1  1222222  23346789999999876665 544333331 1235542222222  67899999888877654


Q ss_pred             e
Q 031223          157 N  157 (163)
Q Consensus       157 H  157 (163)
                      .
T Consensus       193 R  193 (307)
T COG1897         193 R  193 (307)
T ss_pred             c
Confidence            3

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=96.90  E-value=0.0091  Score=48.88  Aligned_cols=46  Identities=15%  Similarity=0.224  Sum_probs=36.4

Q ss_pred             CCCEEEeCCCCCCC-CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ++|.||++||.... .....+.++|++. .++++|.+||-|.-+||.+
T Consensus        75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            79999998885422 2234578888885 6889999999999999986

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.82  E-value=0.013  Score=50.06  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             CeEEEEECCCChH---HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-----CChhHHHHHHHh-C
Q 031223           25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLEL-G   95 (163)
Q Consensus        25 ~~Ilvid~~~~~~---~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-----d~~~~~~~i~~~-~   95 (163)
                      .||+|..-. .|.   ..-.+.|+++|++++.+++-  ..++++ .+.|+|.|.||.-..+     +.....+.|+++ +
T Consensus       246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP-~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~  321 (451)
T COG1797         246 VRIAVARDA-AFNFYYPENLELLREAGAELVFFSPL--ADEELP-PDVDAVYLGGGYPELFAEELSANESMRRAIKAFAA  321 (451)
T ss_pred             ceEEEEecc-hhccccHHHHHHHHHCCCEEEEeCCc--CCCCCC-CCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHH
Confidence            589998432 222   23457789999999888753  123443 2599999999854322     223357778875 7


Q ss_pred             CCCCEEEEehHHHHHHHHh---CCeeeeCC----------Cc-ccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           96 PTVPLFGVCMGLQCIGEAF---GGKIVRSP----------LG-VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~---Gg~v~~~~----------~~-~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +++|++|=|-|+--|++.+   .|..+.+-          .. ...|+. .++..   ++.++..-.+++.-..||.-.+
T Consensus       322 ~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~-~~~~~---~d~~~~~~G~~irGHEFHyS~~  397 (451)
T COG1797         322 AGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYR-EAEAV---DDTLLLRAGEKIRGHEFHYSRL  397 (451)
T ss_pred             cCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhcccee-EEEec---CCcccccCCceeeeeeeeeeec
Confidence            8999999999999888875   33443331          00 113443 33332   3344445556788888887654

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=96.78  E-value=0.0017  Score=47.95  Aligned_cols=47  Identities=19%  Similarity=0.300  Sum_probs=36.8

Q ss_pred             cCCCEEEeCCCCC--CCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           67 KNPRGVLISPGPG--APQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        67 ~~~dgvvl~GG~~--~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .++|.|||+||+.  .....+.+.+++++. .+++++.+||-|..+|+++
T Consensus        60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            3799999999987  122335678888874 7889999999999999997

...

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.54  E-value=0.0095  Score=44.85  Aligned_cols=71  Identities=14%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             HHHHHHHc--CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC----ChhHHHHHHHh-C-CCCCEEEEehHHHHHH
Q 031223           40 LCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLEL-G-PTVPLFGVCMGLQCIG  111 (163)
Q Consensus        40 ~~~~l~~~--G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d----~~~~~~~i~~~-~-~~~PvLGIC~G~QlLa  111 (163)
                      +.+.+.+.  ++..++.+.  .+.+++.  ++|++||+||.+..-.    ...+.+-+.++ . ..+|++|.|-||-.|.
T Consensus        30 ~~~c~~en~y~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS  105 (226)
T KOG3210|consen   30 VEKCIVENRYEIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLS  105 (226)
T ss_pred             HHHhhccCcceEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhh
Confidence            44555554  455555554  3566765  8999999999653211    11234444554 3 4599999999999997


Q ss_pred             HHh
Q 031223          112 EAF  114 (163)
Q Consensus       112 ~a~  114 (163)
                      .-+
T Consensus       106 ~ql  108 (226)
T KOG3210|consen  106 QQL  108 (226)
T ss_pred             hhh
Confidence            754

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.50  E-value=0.0057  Score=45.94  Aligned_cols=46  Identities=20%  Similarity=0.111  Sum_probs=37.1

Q ss_pred             CCCEEEeCCCCCCC-CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAP-QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~-~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ++|.|||+||.... ...+.+.+++++. ++++.|.+||-|..+|+.+
T Consensus        64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            79999999985433 2334578899884 7889999999999999986

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=96.34  E-value=0.013  Score=54.03  Aligned_cols=135  Identities=11%  Similarity=0.136  Sum_probs=72.8

Q ss_pred             CCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC--CC-----CCh------hHHH
Q 031223           24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA--PQ-----DSG------ISLQ   89 (163)
Q Consensus        24 ~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~--~~-----d~~------~~~~   89 (163)
                      .+||+||.-.+.+ ...+..++...|+++.=+...+.-......++|.||++.||..=  +.     +..      ....
T Consensus      1058 ~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~ 1137 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRS 1137 (1320)
T ss_pred             CCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHH
Confidence            4589999876665 44577888889987543322111111111237999999999541  11     111      1222


Q ss_pred             HHHHh--CCCCCEEEEehHHHHHHHH--hCCeeeeCC--------CcccccceeEEEeCCCCcCccccCCC-CceEEeee
Q 031223           90 TVLEL--GPTVPLFGVCMGLQCIGEA--FGGKIVRSP--------LGVMHGKSSLVYYDEKGEDGLLAGLS-KYVSISCY  156 (163)
Q Consensus        90 ~i~~~--~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~--------~~~e~G~~~~i~~~~~~~~~lf~~lp-~~~~v~~~  156 (163)
                      ...++  .++.--||||.|+|+|++.  .|-.+...+        .+..-+....+++.. ..+-++++.. ..+-++.-
T Consensus      1138 QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~-~~SIml~gM~gs~LgvwvA 1216 (1320)
T KOG1907|consen 1138 QFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIES-NVSIMLSGMAGSVLGVWVA 1216 (1320)
T ss_pred             HHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCC-CchhhhccccCCceeeEEE
Confidence            22333  4566779999999999985  222222211        011012222455543 1333445543 45778877


Q ss_pred             eec
Q 031223          157 NIQ  159 (163)
Q Consensus       157 H~~  159 (163)
                      |+.
T Consensus      1217 HGE 1219 (1320)
T KOG1907|consen 1217 HGE 1219 (1320)
T ss_pred             ecc
Confidence            875

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=95.95  E-value=0.11  Score=40.02  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=58.1

Q ss_pred             HHHHHH-HcCCEEEEEeC-CCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHH-------HH
Q 031223           40 LCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC  109 (163)
Q Consensus        40 ~~~~l~-~~G~~~~v~~~-~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~-------Ql  109 (163)
                      +.+.|+ ..|+++++... +..+.+.++  ++|.||+....+... .+...+.+++ ++++++++||..++       .-
T Consensus        24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~l-~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~  100 (217)
T PF06283_consen   24 LAQLLEESEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDEL-TDEQRAALRDYVENGGGLVGLHGAATDSFPDWPE  100 (217)
T ss_dssp             HHHHHHHTTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCGS--HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred             HHHHhccCCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCcC-CHHHHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence            556666 46777776542 112233343  899999877653222 2233455555 57899999998444       22


Q ss_pred             HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEe
Q 031223          110 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSIS  154 (163)
Q Consensus       110 La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~  154 (163)
                      ....+||.....+ .  .+.. .+...+ .++|+.+++|+.|.+.
T Consensus       101 ~~~l~Gg~f~~h~-~--~~~~-~v~~~~-~~HPi~~gl~~~f~~~  140 (217)
T PF06283_consen  101 YNELLGGYFKGHP-P--PQPF-TVRVED-PDHPITRGLPESFTIY  140 (217)
T ss_dssp             HHHHHS--SEEEE-C--EEEE-EEEESS-TTSCCCTTS-SEEEEE
T ss_pred             HHHeeCccccCCC-C--CceE-EEEEcC-CCChhhcCCCCCceEc
Confidence            4446787654433 1  1222 344443 3799999998877663

>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.70  E-value=0.11  Score=42.47  Aligned_cols=75  Identities=19%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC---------------CHHHHhccCCCEEEeCCCCCCCCCCh
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDSG   85 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~~~~~~dgvvl~GG~~~~~d~~   85 (163)
                      +|+|+-+...     ....+.+||++.|+++.+-.....               +.+++. .++|.+|..||-+      
T Consensus         7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG------   79 (296)
T PRK04539          7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG------   79 (296)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH------
Confidence            4888865433     233477889899998876532100               011221 2589999999954      


Q ss_pred             hHHHHHHHh-CCCCCEEEEehHH
Q 031223           86 ISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                      .+....+.+ ..++|+|||=.|.
T Consensus        80 T~L~aa~~~~~~~~PilGIN~G~  102 (296)
T PRK04539         80 TFLSVAREIAPRAVPIIGINQGH  102 (296)
T ss_pred             HHHHHHHHhcccCCCEEEEecCC
Confidence            356666665 5689999999986

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=95.60  E-value=0.14  Score=38.66  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             CeEEEE-ECCCChHHHHHHHHHH-c--CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CCChhHHHHHHHh---CC
Q 031223           25 NPIIVI-DNYDSFTYNLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLEL---GP   96 (163)
Q Consensus        25 ~~Ilvi-d~~~~~~~~~~~~l~~-~--G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d~~~~~~~i~~~---~~   96 (163)
                      |+++|+ .-..+.+..+++++.+ +  |.++++++..+....++.  +||.||| |+|--. .....+.+++.+.   -+
T Consensus         1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~--~yD~vIl-Gspi~~G~~~~~~~~fl~~~~~~l~   77 (177)
T PRK11104          1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLS--DYDRVVI-GASIRYGHFHSALYKFVKKHATQLN   77 (177)
T ss_pred             CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHH--HCCEEEE-ECccccCCcCHHHHHHHHHHHHHhC
Confidence            456676 3344567777666644 2  667888775432222333  7999888 554321 2223445555442   36


Q ss_pred             CCCEEEEehHH
Q 031223           97 TVPLFGVCMGL  107 (163)
Q Consensus        97 ~~PvLGIC~G~  107 (163)
                      ++|+.-.|-|+
T Consensus        78 ~K~v~~F~v~l   88 (177)
T PRK11104         78 QMPSAFFSVNL   88 (177)
T ss_pred             CCeEEEEEech
Confidence            78888888773

>TIGR02069 cyanophycinase cyanophycinase

Probab=95.52  E-value=0.085  Score=42.08  Aligned_cols=105  Identities=11%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             CChhhHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCC-EEEEEeCCCC----CHHHHhc-cCCCEEEeCC
Q 031223            7 VPISKSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGY-HFEVYRNDEL----TVEELKR-KNPRGVLISP   76 (163)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~-~~~v~~~~~~----~~~~~~~-~~~dgvvl~G   76 (163)
                      +...|+.|++.....  ..||++|-..+.    +...+.++++.+|+ .+.++..+..    +.+.+.. .+.|+|+++|
T Consensus        13 ~~~i~~~~~~lag~~--~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G   90 (250)
T TIGR02069        13 DREILREFVSRAGGE--DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG   90 (250)
T ss_pred             hHHHHHHHHHHhCCC--CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence            445777787666443  368999964333    23456778888998 4666654211    1111111 3799999999


Q ss_pred             CCCCC----CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           77 GPGAP----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        77 G~~~~----~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      |....    .....+.+.|++ +.++.|+.|.--|+-+|+..
T Consensus        91 Gnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~  132 (250)
T TIGR02069        91 GDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT  132 (250)
T ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence            95321    111234566766 57889999999999888654

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.52  E-value=0.076  Score=43.01  Aligned_cols=77  Identities=18%  Similarity=0.307  Sum_probs=50.0

Q ss_pred             CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC--C------HHHHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL--T------VEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (163)
Q Consensus        25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~--~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i   91 (163)
                      |||+|+-+.+.     ....+.++|++.|+++.+......  .      ...+...++|.+|..||-+      .+.+.+
T Consensus         1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~   74 (277)
T PRK03708          1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIE   74 (277)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHH
Confidence            57888866443     233477788899999887632100  0      0122223689999999954      355666


Q ss_pred             HHhCCCCCEEEEehHH
Q 031223           92 LELGPTVPLFGVCMGL  107 (163)
Q Consensus        92 ~~~~~~~PvLGIC~G~  107 (163)
                      +....++|++||=.|.
T Consensus        75 ~~~~~~~pi~gIn~G~   90 (277)
T PRK03708         75 HKTKKDIPILGINMGT   90 (277)
T ss_pred             HhcCCCCeEEEEeCCC
Confidence            6335689999999986

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=95.46  E-value=0.07  Score=41.64  Aligned_cols=83  Identities=12%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             CCeEEEEECC------CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC-----hhHHHH
Q 031223           24 KNPIIVIDNY------DSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS-----GISLQT   90 (163)
Q Consensus        24 ~~~Ilvid~~------~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~-----~~~~~~   90 (163)
                      ..+|++|-..      +.|.....++|+++|+.+.-++....+.+++..  .+.|.|.+.||. ..+-.     --+.++
T Consensus        32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGN-TF~LL~~lke~gld~i  110 (224)
T COG3340          32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGN-TFNLLQELKETGLDDI  110 (224)
T ss_pred             CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCch-HHHHHHHHHHhCcHHH
Confidence            5589999221      225666788999999998877765456667653  368999998873 21100     113677


Q ss_pred             HHH-hCCCCCEEEEehHH
Q 031223           91 VLE-LGPTVPLFGVCMGL  107 (163)
Q Consensus        91 i~~-~~~~~PvLGIC~G~  107 (163)
                      |++ +.+++|..|+--|+
T Consensus       111 Ir~~vk~G~~YiG~SAGA  128 (224)
T COG3340         111 IRERVKAGTPYIGWSAGA  128 (224)
T ss_pred             HHHHHHcCCceEEeccCc
Confidence            777 68999999988765

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=95.44  E-value=0.11  Score=42.47  Aligned_cols=75  Identities=21%  Similarity=0.319  Sum_probs=49.3

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      +|+|+-+...     ....+.++|++.|+++.+......          +.+++ ..++|.+|..||-+      .+...
T Consensus         7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~   79 (291)
T PRK02155          7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDG------TMLGI   79 (291)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcH------HHHHH
Confidence            4888866443     134577888889988766432100          11222 12589999999954      36677


Q ss_pred             HHHh-CCCCCEEEEehHH
Q 031223           91 VLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        91 i~~~-~~~~PvLGIC~G~  107 (163)
                      ++.+ ..++|+|||=.|.
T Consensus        80 ~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         80 GRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             HHHhcCCCCCEEEEcCCC
Confidence            7775 5789999999886

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=95.33  E-value=0.17  Score=39.42  Aligned_cols=105  Identities=15%  Similarity=0.168  Sum_probs=65.2

Q ss_pred             CChhhHhhHHhhhcCCCCCeEEEEECCC----ChHHHHHHHHHHcCCE-EEEEeCCC----CCHHHHhc-cCCCEEEeCC
Q 031223            7 VPISKSLYLDDKKSKNNKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE----LTVEELKR-KNPRGVLISP   76 (163)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~----~~~~~~~~~l~~~G~~-~~v~~~~~----~~~~~~~~-~~~dgvvl~G   76 (163)
                      +...++.+++...  +.+.+|++|...+    .+...+.++++++|+. +.++..+.    .+.+-... .+.|+|+++|
T Consensus        14 ~~~i~~~~~~~ag--~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~G   91 (217)
T cd03145          14 NRAILQRFVARAG--GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTG   91 (217)
T ss_pred             HHHHHHHHHHHcC--CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeC
Confidence            3445555555543  3567899997654    3455677888889985 45543321    11111111 3799999999


Q ss_pred             CCCCCC----CChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           77 GPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        77 G~~~~~----d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      |.....    ....+.+.|++ ++++.|+.|.--|+-+++..
T Consensus        92 G~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          92 GDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             CcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            843211    11134566666 57899999999999888765

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.29  E-value=0.12  Score=42.21  Aligned_cols=76  Identities=20%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------------CHHHHhccCCCEEEeCCCCCCCCC
Q 031223           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQD   83 (163)
Q Consensus        25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------------~~~~~~~~~~dgvvl~GG~~~~~d   83 (163)
                      |+|.|+-+...     ....+.++|++.|+++.+-+....                +.+++. .++|.+|..||-+    
T Consensus         1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG----   75 (292)
T PRK01911          1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG----   75 (292)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH----
Confidence            56888855433     234577788889998876532100                011221 2589999999954    


Q ss_pred             ChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           84 SGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                        .+....+.+ ..++|+|||=.|.
T Consensus        76 --T~L~aa~~~~~~~~PilGIN~G~   98 (292)
T PRK01911         76 --TFLRTATYVGNSNIPILGINTGR   98 (292)
T ss_pred             --HHHHHHHHhcCCCCCEEEEecCC
Confidence              356666765 5689999999886

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.20  E-value=0.16  Score=41.72  Aligned_cols=76  Identities=17%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCCCH-------------------HHHhccCCCEEEeCCCCCC
Q 031223           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELTV-------------------EELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~~~-------------------~~~~~~~~dgvvl~GG~~~   80 (163)
                      ++|+|+-+...     ....+.++|++.|+++.+........                   +++ ..++|.+|..||-+ 
T Consensus         6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG-   83 (306)
T PRK03372          6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG-   83 (306)
T ss_pred             cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH-
Confidence            45999866433     23457788989999887754211000                   111 12589999999954 


Q ss_pred             CCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           81 PQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                           .+....+.+ ..++|+|||=.|.
T Consensus        84 -----T~L~aar~~~~~~~PilGIN~G~  106 (306)
T PRK03372         84 -----TILRAAELARAADVPVLGVNLGH  106 (306)
T ss_pred             -----HHHHHHHHhccCCCcEEEEecCC
Confidence                 356666664 5789999999884

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=95.17  E-value=0.14  Score=41.78  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      +|+|+-+...     ....+.+||++.|+++.+-.....          +.+++ ..++|.+|..||-+      .+...
T Consensus         7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDG------T~L~a   79 (292)
T PRK03378          7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDG------NMLGA   79 (292)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcH------HHHHH
Confidence            4888866433     133577889889988876432100          01111 12589999999954      35666


Q ss_pred             HHHh-CCCCCEEEEehHH
Q 031223           91 VLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        91 i~~~-~~~~PvLGIC~G~  107 (163)
                      .+.+ ..++|++||-.|.
T Consensus        80 a~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         80 ARVLARYDIKVIGINRGN   97 (292)
T ss_pred             HHHhcCCCCeEEEEECCC
Confidence            6665 4579999999998

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=95.04  E-value=0.021  Score=41.81  Aligned_cols=83  Identities=14%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             cCCCCCeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHH----------------HhccCCCEEEeCCCCCC
Q 031223           20 SKNNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEE----------------LKRKNPRGVLISPGPGA   80 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~----------------~~~~~~dgvvl~GG~~~   80 (163)
                      +.+...+|+.+-.-+-   |...+...+|+.+.+-..+|..+  .++                ....++|.|||.||-..
T Consensus        15 ~~~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d--~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAM   92 (147)
T PF09897_consen   15 GLKDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDAD--LEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAM   92 (147)
T ss_dssp             --TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT---GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGS
T ss_pred             cccCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCC--hhhhheeeccCcccccccccCCCCCCEEEEEccccc
Confidence            4445568999976544   34456667787777776666532  111                11225899999999666


Q ss_pred             CC---CChhHHHHHHHhCCCCCEEEEeh
Q 031223           81 PQ---DSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        81 ~~---d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      |.   +.++..+.+.++.. +.+.|||+
T Consensus        93 P~~~v~~e~v~~li~ki~~-~~iiGiCF  119 (147)
T PF09897_consen   93 PKSGVTPEDVNELIKKISP-KKIIGICF  119 (147)
T ss_dssp             TTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence            65   34556777777632 33999996

; PDB: 2R47_D.

>cd00886 MogA_MoaB MogA_MoaB family

Probab=94.99  E-value=0.42  Score=35.02  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=40.0

Q ss_pred             CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--c--CCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223           33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--K--NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~--~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P   99 (163)
                      ++++...+.++|++.|+++..+..-..+.+++.    .  .  ++|.||.+||. ++.+.+...+.++++ ++..|
T Consensus        18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~-s~g~~D~t~~al~~~~~~~l~   92 (152)
T cd00886          18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGT-GLAPRDVTPEATRPLLDKELP   92 (152)
T ss_pred             ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-CCCCCcCcHHHHHHHhCCcCc
Confidence            455677788999999988765432111233321    1  2  69999999984 445444455666664 43333

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=94.35  E-value=0.26  Score=43.83  Aligned_cols=96  Identities=15%  Similarity=0.207  Sum_probs=58.8

Q ss_pred             CCChhhHhhHHhhhcCC--CCCeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCCCHH----H----H-hccCC
Q 031223            6 AVPISKSLYLDDKKSKN--NKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----E----L-KRKNP   69 (163)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~~~~----~----~-~~~~~   69 (163)
                      +++.-++.+++.++..-  ..++|.|+-+... .    ...+.++|++.|+++.+-+.......    +    . ...++
T Consensus       270 a~~~l~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (569)
T PRK14076        270 SNEILHKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEI  349 (569)
T ss_pred             ECHHHHHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCC
Confidence            45666666666663322  2257999866433 1    33477788888988776532100000    0    0 01257


Q ss_pred             CEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           70 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        70 dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                      |.+|..||-+      .+....+.+ ..++|||||=.|.
T Consensus       350 dlvi~lGGDG------T~L~aa~~~~~~~~PilGin~G~  382 (569)
T PRK14076        350 SHIISIGGDG------TVLRASKLVNGEEIPIICINMGT  382 (569)
T ss_pred             CEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence            9999999954      356666765 4689999999885

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.34  E-value=0.46  Score=35.74  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             cCCCEEEeCCCCCCCCCC-------------hhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCee
Q 031223           67 KNPRGVLISPGPGAPQDS-------------GISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKI  118 (163)
Q Consensus        67 ~~~dgvvl~GG~~~~~d~-------------~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v  118 (163)
                      ..+|++|++||.+.....             +++..+.+.+ +++||+-=||..--|+...||.-+
T Consensus        84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~  149 (217)
T COG3155          84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL  149 (217)
T ss_pred             HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence            478999999998865321             1234555554 688999999999999999998644

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=94.32  E-value=0.11  Score=43.81  Aligned_cols=85  Identities=14%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             CeEEEEECCCChHH---HHHHHHHH-cCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCCCC---hhHHHHHHH
Q 031223           25 NPIIVIDNYDSFTY---NLCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTVLE   93 (163)
Q Consensus        25 ~~Ilvid~~~~~~~---~~~~~l~~-~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~d~---~~~~~~i~~   93 (163)
                      |+|+|-+-.+....   .....|+. +.-.+.|...+   ...+.    ..+++.+|++||.+.++..   +.-.+.||+
T Consensus         1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~---~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~   77 (367)
T PF09825_consen    1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVT---ADELLNEPWQSKCALLVMPGGADLPYCRSLNGEGNRRIRQ   77 (367)
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeC---HHHhhcCccccCCcEEEECCCcchHHHHhhChHHHHHHHH
Confidence            46777643333333   34455554 22233343322   23332    1368999999998765532   223667788


Q ss_pred             h-CCCCCEEEEehHHHHHHH
Q 031223           94 L-GPTVPLFGVCMGLQCIGE  112 (163)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~  112 (163)
                      + .++.-.||||.|.-.-..
T Consensus        78 fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   78 FVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             HHHcCCcEEEECcchhhhcc
Confidence            5 678999999999866554

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.89  E-value=0.14  Score=36.94  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=27.2

Q ss_pred             CCCEEEeCCCCCCCC---CChhHHHHHHHhCCCCCEEEEeh
Q 031223           68 NPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCM  105 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~---d~~~~~~~i~~~~~~~PvLGIC~  105 (163)
                      ..|.||+.||-..|.   +.++..+++.+. .++|+.|+|+
T Consensus        85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~-~~kkliGvCf  124 (154)
T COG4090          85 SADVVVLLGGLAMPKIGVTPDDAKELLEEL-GNKKLIGVCF  124 (154)
T ss_pred             cccEEEEEcccccCcCCCCHHHHHHHHHhc-CCCceEEeeH
Confidence            489999999977665   334566666665 3469999995

>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.75  E-value=0.46  Score=39.10  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC-------------------CHHHHhccCCCEEEeCCCCCCC
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP   81 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~-------------------~~~~~~~~~~dgvvl~GG~~~~   81 (163)
                      +|.|+-+.+.     ....+.++|++.|+++.+......                   ...++ ..++|.+|..||-+  
T Consensus         3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDG--   79 (305)
T PRK02649          3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAIVLGGDG--   79 (305)
T ss_pred             EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc-ccCcCEEEEEeCcH--
Confidence            4888866433     234577888899998876532100                   01111 12589999999954  


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                          .+....+.+ ..++|+|||-.|.
T Consensus        80 ----TlL~aar~~~~~~iPilGIN~G~  102 (305)
T PRK02649         80 ----TVLSAARQLAPCGIPLLTINTGH  102 (305)
T ss_pred             ----HHHHHHHHhcCCCCcEEEEeCCC
Confidence                356667765 5789999998873

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=93.51  E-value=1.1  Score=33.43  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=34.8

Q ss_pred             CCChHHHHHHHHHHcCCEEEEEeCCCCCHHH----Hh----ccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223           33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEE----LK----RKNPRGVLISPGPGAPQDSGISLQTVLE   93 (163)
Q Consensus        33 ~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~----~~----~~~~dgvvl~GG~~~~~d~~~~~~~i~~   93 (163)
                      .+++...+..+|++.|+++..+..-..+.+.    +.    ..++|.||.+||.+ +.+.+...+.+++
T Consensus        20 ~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg-~g~~D~t~eal~~   87 (163)
T TIGR02667        20 DDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG-FTGRDVTPEALEP   87 (163)
T ss_pred             CCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCCCcHHHHHH
Confidence            3456667889999999987654321112222    21    13699999999954 3333333344444

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=93.35  E-value=0.33  Score=36.30  Aligned_cols=81  Identities=16%  Similarity=0.081  Sum_probs=47.8

Q ss_pred             CeEEEEE-CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh---CC
Q 031223           25 NPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL---GP   96 (163)
Q Consensus        25 ~~Ilvid-~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~---~~   96 (163)
                      ||+||+- -.++.+..    ++..|++.|+++++.+..+  ..++...+||+|||.-+...-.....+...+++.   -+
T Consensus         1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~--~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~   78 (175)
T COG4635           1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHA--VEEPALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALS   78 (175)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhh--hhccChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHh
Confidence            4677772 23345554    5556788999999987542  3333345899999933321111222344455442   36


Q ss_pred             CCCEEEEehHH
Q 031223           97 TVPLFGVCMGL  107 (163)
Q Consensus        97 ~~PvLGIC~G~  107 (163)
                      .+|..-+|.+.
T Consensus        79 ~kP~A~f~vnl   89 (175)
T COG4635          79 TKPSAFFSVNL   89 (175)
T ss_pred             cCCceEEEeeh
Confidence            78888888764

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=93.32  E-value=0.19  Score=33.60  Aligned_cols=77  Identities=21%  Similarity=0.339  Sum_probs=49.6

Q ss_pred             EEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      |+|+|........+.++|+..|+ .+............+....||.+++.-.... .+...+.+.+++...+.|++.++
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t   78 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT   78 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence            68898866677788899998898 6665532111123334457998888543211 23334566667656789999988

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.29  E-value=0.54  Score=38.43  Aligned_cols=75  Identities=20%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCC-------C---HHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL-------T---VEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~-------~---~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      +|.|+-+...     ....+.++|++.|+++.+......       .   ..++ ...+|.+|..||-+      .+...
T Consensus         6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDG------t~l~~   78 (295)
T PRK01231          6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDG------SLLGA   78 (295)
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcH------HHHHH
Confidence            5888866433     233477788889998877542110       0   0111 12589999999954      35555


Q ss_pred             HHHh-CCCCCEEEEehHH
Q 031223           91 VLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        91 i~~~-~~~~PvLGIC~G~  107 (163)
                      .+.+ ..++|++||=.|.
T Consensus        79 ~~~~~~~~~Pvlgin~G~   96 (295)
T PRK01231         79 ARALARHNVPVLGINRGR   96 (295)
T ss_pred             HHHhcCCCCCEEEEeCCc
Confidence            6665 5789999999885

>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=93.21  E-value=0.63  Score=37.91  Aligned_cols=76  Identities=12%  Similarity=0.082  Sum_probs=49.2

Q ss_pred             CeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC-------CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE   93 (163)
Q Consensus        25 ~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~-------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~   93 (163)
                      ++|.|+-+....    ...+.++|++.|+++.+-+....       ..+++. .++|.+|..||-+      .+....+.
T Consensus        11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~~   83 (287)
T PRK14077         11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCRK   83 (287)
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHHH
Confidence            358888664332    23467788888988876542100       011221 2689999999954      35666676


Q ss_pred             h-CCCCCEEEEehHH
Q 031223           94 L-GPTVPLFGVCMGL  107 (163)
Q Consensus        94 ~-~~~~PvLGIC~G~  107 (163)
                      + ..++|+|||=.|.
T Consensus        84 ~~~~~~PilGIN~G~   98 (287)
T PRK14077         84 AAEYDKFVLGIHAGH   98 (287)
T ss_pred             hcCCCCcEEEEeCCC
Confidence            5 5689999999997

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.14  E-value=0.072  Score=39.05  Aligned_cols=73  Identities=8%  Similarity=0.127  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCC----CChhHHHHHHH-hCCCCCEEEEehHHHH
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQC  109 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~----d~~~~~~~i~~-~~~~~PvLGIC~G~Ql  109 (163)
                      ...+.++++++|+++..++....+.++...  .+.|+|+++||.-...    ....+.+.|++ +.+++|+.|.--|+-+
T Consensus         2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i   81 (154)
T PF03575_consen    2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI   81 (154)
T ss_dssp             HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred             HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence            456778999999998888754322233221  3799999999832110    01124667777 4778999999999855

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PLN02929 NADH kinase

Probab=93.09  E-value=0.35  Score=39.71  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehH
Q 031223           36 FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG  106 (163)
Q Consensus        36 ~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G  106 (163)
                      ....+.++|++.|+++..+.-.  ...+. ..++|.+|..||-+      .+....+.+..++||+||=.|
T Consensus        35 ~~~~~~~~L~~~gi~~~~v~r~--~~~~~-~~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G   96 (301)
T PLN02929         35 TVNFCKDILQQKSVDWECVLRN--ELSQP-IRDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD   96 (301)
T ss_pred             HHHHHHHHHHHcCCEEEEeecc--ccccc-cCCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence            3456788999999988655322  11111 13789999999954      355555656677999999998

>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.18  E-value=0.86  Score=36.46  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=45.4

Q ss_pred             CeEEEEECCCC--hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           25 NPIIVIDNYDS--FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        25 ~~Ilvid~~~~--~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      |++.|+...++  ....+.++|.+.|..+...... .   . ...++|.+|..||-+      .+....+.+  ++|++|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilg   67 (256)
T PRK14075          1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDG------TVLKAAKKV--GTPLVG   67 (256)
T ss_pred             CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcH------HHHHHHHHc--CCCEEE
Confidence            46777754433  2445777888888765543211 1   1 123789999999954      355566666  799999


Q ss_pred             EehHH
Q 031223          103 VCMGL  107 (163)
Q Consensus       103 IC~G~  107 (163)
                      |-.|.
T Consensus        68 in~G~   72 (256)
T PRK14075         68 FKAGR   72 (256)
T ss_pred             EeCCC
Confidence            99885

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=92.17  E-value=0.97  Score=37.10  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=46.7

Q ss_pred             CeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCC--CHH---HHhccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        25 ~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~--~~~---~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      +++++|-+-+. .    ...+.++|++.|+++.+......  ...   ......+|.+|..||-+      .+...++.+
T Consensus         4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~   77 (305)
T PRK02645          4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHL   77 (305)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHh
Confidence            35888755332 2    22466778889998877543211  000   11123589999999954      355666665


Q ss_pred             -CCCCCEEEEeh
Q 031223           95 -GPTVPLFGVCM  105 (163)
Q Consensus        95 -~~~~PvLGIC~  105 (163)
                       ..++|++||=.
T Consensus        78 ~~~~~pv~gin~   89 (305)
T PRK02645         78 APHDIPILSVNV   89 (305)
T ss_pred             ccCCCCEEEEec
Confidence             56899999998

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=91.48  E-value=1.4  Score=35.52  Aligned_cols=55  Identities=16%  Similarity=0.056  Sum_probs=37.3

Q ss_pred             CCCCCeEEEEECCCC--------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeC
Q 031223           21 KNNKNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~--------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~   75 (163)
                      ++|+++|+|+-.+.+        -...+.++|++.|+++.++..+......+...++|.++..
T Consensus         1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~   63 (304)
T PRK01372          1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA   63 (304)
T ss_pred             CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence            467778999853322        1245889999999999988765333333434579998874

>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=91.48  E-value=0.81  Score=36.87  Aligned_cols=64  Identities=28%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             CeEEEEECCCChHH----HHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC---CC
Q 031223           25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~---~~   97 (163)
                      |+|.|+-+......    .+.++|++.|+++     +        ..++|.+|..||-+      .+....+.+.   .+
T Consensus         1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~--------~~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~   61 (265)
T PRK04885          1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D--------EKNPDIVISVGGDG------TLLSAFHRYENQLDK   61 (265)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C--------CcCCCEEEEECCcH------HHHHHHHHhcccCCC
Confidence            45888866332222    3556677777652     1        12579999999954      3566666653   58


Q ss_pred             CCEEEEehHH
Q 031223           98 VPLFGVCMGL  107 (163)
Q Consensus        98 ~PvLGIC~G~  107 (163)
                      +|++||=.|.
T Consensus        62 iPilGIN~G~   71 (265)
T PRK04885         62 VRFVGVHTGH   71 (265)
T ss_pred             CeEEEEeCCC
Confidence            9999999885

>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=90.91  E-value=0.85  Score=36.91  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=41.4

Q ss_pred             HHHHHHHHHcCCEEEEEeCCCC----------CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223           38 YNLCQYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~~----------~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G  106 (163)
                      ..+.+||++.|+++.+-+....          +.+++. .++|.+|..||-+      .+....+.+ ..++|+|||=.|
T Consensus         3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G   75 (272)
T PRK02231          3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG   75 (272)
T ss_pred             HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence            3577889899988876542100          112222 2589999999954      356666665 568999999988

>smart00852 MoCF_biosynth Probable molybdopterin binding domain

Probab=90.50  E-value=1.5  Score=31.18  Aligned_cols=65  Identities=28%  Similarity=0.462  Sum_probs=38.0

Q ss_pred             CChHHHHHHHHHHcCCEEEEEe--CCCCC-H-HHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223           34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~-~-~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P   99 (163)
                      +++...+..+|++.|+++....  .|+.. . +.+..  .++|.||.+||.+ +...+...+.++++ ...++
T Consensus        17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~~~~~~~   88 (135)
T smart00852       17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEALGKELP   88 (135)
T ss_pred             cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHHhCCcCC
Confidence            4566678899999998765332  23211 1 11211  3699999999965 44444455666664 43344

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.

>PRK05569 flavodoxin; Provisional

Probab=90.36  E-value=4.9  Score=28.46  Aligned_cols=76  Identities=11%  Similarity=0.048  Sum_probs=43.4

Q ss_pred             eEEEEEC-CCChHHHHHHHHH----HcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CC--hhHHHHHHHh---
Q 031223           26 PIIVIDN-YDSFTYNLCQYMG----ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS--GISLQTVLEL---   94 (163)
Q Consensus        26 ~Ilvid~-~~~~~~~~~~~l~----~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~--~~~~~~i~~~---   94 (163)
                      +|+|+-+ ..+++..+++++.    +.|+++++.+....+..++.  ++|+|+| |.|---. ..  ..+..++.++   
T Consensus         3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsPty~~~~~~~~~~~~~~~~l~~~   79 (141)
T PRK05569          3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPSMDNNNIEQEEMAPFLDQFKLT   79 (141)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECCCcCCCcCChHHHHHHHHHhhcc
Confidence            5666633 3446776666554    46888888876544445554  7999998 6653111 11  2344445443   


Q ss_pred             C-CCCCEEEEe
Q 031223           95 G-PTVPLFGVC  104 (163)
Q Consensus        95 ~-~~~PvLGIC  104 (163)
                      . +++++.-+|
T Consensus        80 ~~~~K~v~~f~   90 (141)
T PRK05569         80 PNENKKCILFG   90 (141)
T ss_pred             CcCCCEEEEEe
Confidence            2 567776555

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]

Probab=89.84  E-value=2.3  Score=37.21  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             hHhhHHhh----hcCCCCCeEEEEECCCChHHH-HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-
Q 031223           11 KSLYLDDK----KSKNNKNPIIVIDNYDSFTYN-LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-   84 (163)
Q Consensus        11 ~~~~~~~~----~~~~~~~~Ilvid~~~~~~~~-~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-   84 (163)
                      |+..|+.+    ++.+...|+.|||....+.+. +.+.|.+.|+++..+....  ..-+- .+.+-|++ |+. +.... 
T Consensus       368 ~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a--~syim-~evtkvfL-Gah-ailsNG  442 (556)
T KOG1467|consen  368 SSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINA--ASYIM-LEVTKVFL-GAH-AILSNG  442 (556)
T ss_pred             chHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehh--HHHHH-Hhcceeee-chh-hhhcCc
Confidence            56666666    888889999999998877664 8899999999998776432  22222 24555555 552 22111 


Q ss_pred             ------hh-HHHHHHHhCCCCCEEEEehHHHHH
Q 031223           85 ------GI-SLQTVLELGPTVPLFGVCMGLQCI  110 (163)
Q Consensus        85 ------~~-~~~~i~~~~~~~PvLGIC~G~QlL  110 (163)
                            +. ...++.. ..++|||-.|--+-..
T Consensus       443 ~vysR~GTa~valvAn-a~nVPVlVCCE~yKF~  474 (556)
T KOG1467|consen  443 AVYSRVGTACVALVAN-AFNVPVLVCCEAYKFH  474 (556)
T ss_pred             chhhhcchHHHHHHhc-ccCCCEEEEechhhhh
Confidence                  21 2223222 4679999999765443

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=89.74  E-value=0.75  Score=38.24  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CCCEEEeCCCCCCCCCC--hhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAPQDS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~--~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+|-+++.+|.......  ..+.+++++. .++.++.|||-|.-+||++
T Consensus        76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            47888886764433322  4578899984 7899999999999999997

>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]

Probab=89.64  E-value=2.1  Score=36.68  Aligned_cols=58  Identities=17%  Similarity=0.088  Sum_probs=37.6

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h--ccCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPGAPQDSGISLQTVL   92 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~--~~~~dgvvl~GG~~~~~d~~~~~~~i~   92 (163)
                      +++...+...|++.|+++..+..-..+.+.+    .  ..++|.||.+|| .++.+.+-+.+.++
T Consensus       202 dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG-~SvG~~D~v~~~l~  265 (404)
T COG0303         202 DSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGG-VSVGDADYVKAALE  265 (404)
T ss_pred             ecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCC-ccCcchHhHHHHHH
Confidence            4556678889999999776554211122332    2  136999999999 45666665666666

>PRK01215 competence damage-inducible protein A; Provisional

Probab=89.45  E-value=3.2  Score=33.38  Aligned_cols=43  Identities=21%  Similarity=0.289  Sum_probs=28.1

Q ss_pred             ChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223           35 SFTYNLCQYMGELGYHFEVYR--NDELTVEELK------RKNPRGVLISPGPG   79 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~------~~~~dgvvl~GG~~   79 (163)
                      ++...+.++|.+.|+++....  .|+  .+.+.      ..++|.||++||-+
T Consensus        23 tn~~~l~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVIttGG~g   73 (264)
T PRK01215         23 TNASWIARRLTYLGYTVRRITVVMDD--IEEIVSAFREAIDRADVVVSTGGLG   73 (264)
T ss_pred             hhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            455568899999999876432  232  23221      13689999999954

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e

Probab=89.44  E-value=0.69  Score=32.06  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH-hccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~-~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      ||+|||....-.+.+.-.|...|.+++.+...+  .... .....+++++..|...  ......+.+.+.....|++=+
T Consensus         1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~--~~~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll   75 (109)
T PF06490_consen    1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSD--WSQADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL   75 (109)
T ss_pred             CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHH--HHHhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence            699999765566678888888999998886431  1111 1235677766555333  111223333333567898754

g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).

>PRK09468 ompR osmolarity response regulator; Provisional

Probab=89.42  E-value=3  Score=31.66  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      ...+|++++........+...|...|+.+..........+.+....+|.+|+--..  +... -.....+++.....|++
T Consensus         4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~~~~~pii   81 (239)
T PRK09468          4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLML--PGEDGLSICRRLRSQNNPTPII   81 (239)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCCEE
Confidence            44689999886666777888898899887755321111122223468988873221  1112 12344455433568999


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -++-
T Consensus        82 ~ls~   85 (239)
T PRK09468         82 MLTA   85 (239)
T ss_pred             EEEC
Confidence            8864

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional

Probab=89.41  E-value=2.3  Score=31.82  Aligned_cols=79  Identities=10%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      |+|+++|........+...|+..|+.+............+....+|.+++--.  .+... -...+.+++.....|++-+
T Consensus         1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l   78 (223)
T PRK10816          1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (223)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47999998666677788889889987765432111112223346898887322  11111 1233444443356898877


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      .-
T Consensus        79 s~   80 (223)
T PRK10816         79 TA   80 (223)
T ss_pred             Ec
Confidence            53

>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=89.31  E-value=2  Score=34.69  Aligned_cols=73  Identities=14%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CeEEEEECCCC-h----HHHHHHHHHHcCCEEEEEeCCCCCHH----HHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC
Q 031223           25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLELG   95 (163)
Q Consensus        25 ~~Ilvid~~~~-~----~~~~~~~l~~~G~~~~v~~~~~~~~~----~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~   95 (163)
                      |+|.|+-+... .    ...+.++| +.|+++.+-........    +....++|.+|..||-+.      +....+.+.
T Consensus         1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~   73 (271)
T PRK01185          1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK   73 (271)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC
Confidence            46888855433 2    23466677 46877665431100000    111126899999999543      445555544


Q ss_pred             CCCCEEEEehH
Q 031223           96 PTVPLFGVCMG  106 (163)
Q Consensus        96 ~~~PvLGIC~G  106 (163)
                        .|++||=.|
T Consensus        74 --~PilGIN~G   82 (271)
T PRK01185         74 --GPILGINMG   82 (271)
T ss_pred             --CCEEEEECC
Confidence              699999998

>cd00885 cinA Competence-damaged protein

Probab=89.08  E-value=7.8  Score=28.97  Aligned_cols=80  Identities=24%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             CChHHHHHHHHHHcCCEEEEEe--CCCCC-H-HHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehH
Q 031223           34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG  106 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~-~-~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G  106 (163)
                      +++...+.++|++.|+++....  .|+.. . +.+.  ..++|.||.+||-+ +...+...+.+++ ++  +|+.+.=--
T Consensus        18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G-~t~~D~t~ea~~~~~~--~~l~~~~e~   94 (170)
T cd00885          18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLG-PTHDDLTREAVAKAFG--RPLVLDEEA   94 (170)
T ss_pred             EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCChHHHHHHHHhC--CCcccCHHH
Confidence            3456678899999999865332  22111 1 1121  13789999999954 4444445556665 34  566666566


Q ss_pred             HHHHHHHhCC
Q 031223          107 LQCIGEAFGG  116 (163)
Q Consensus       107 ~QlLa~a~Gg  116 (163)
                      .+.|-..+..
T Consensus        95 ~~~i~~~~~~  104 (170)
T cd00885          95 LERIEARFAR  104 (170)
T ss_pred             HHHHHHHHHh
Confidence            6666665553

CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.

>PRK11083 DNA-binding response regulator CreB; Provisional

Probab=88.68  E-value=3.6  Score=30.57  Aligned_cols=80  Identities=14%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      .++|+++|....+...+...|...|+.+............+....+|.+++--... ..+.-...+.+++.....|++-+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~-~~~g~~~~~~l~~~~~~~~ii~l   81 (228)
T PRK11083          3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLP-DISGFELCRQLLAFHPALPVIFL   81 (228)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCCEEEE
Confidence            36899999866567778888888888765443211112223334689887732211 11111234444544456888877


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      +
T Consensus        82 s   82 (228)
T PRK11083         82 T   82 (228)
T ss_pred             E
Confidence            5

>COG4126 Hydantoin racemase [Amino acid transport and metabolism]

Probab=88.54  E-value=4.8  Score=31.71  Aligned_cols=46  Identities=17%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhCCeeee
Q 031223           68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR  120 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~  120 (163)
                      .+|++||    ....|  ...+.+|+. ..+|+.|||--.-..|...|-++.-
T Consensus        69 GvdaiiI----aCf~D--Pgl~~~Re~-~~~PviGi~eAsv~~A~~vgrrfsV  114 (230)
T COG4126          69 GVDAIII----ACFSD--PGLAAARER-AAIPVIGICEASVLAALFVGRRFSV  114 (230)
T ss_pred             CCcEEEE----EecCC--hHHHHHHHH-hCCCceehhHHHHHHHHHhcceEEE
Confidence            5899998    23333  345677774 2399999999998889888877654

>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD)

Probab=88.39  E-value=3.2  Score=29.51  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      +++...+.++|++.|+++.....-..+.+.+    ..  .++|.||.+||-+ +...+...+.++++
T Consensus        18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g-~g~~D~t~~ai~~~   83 (133)
T cd00758          18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG-VGRRDVTPEALAEL   83 (133)
T ss_pred             EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC-CCCCcchHHHHHHh
Confidence            4566678889999998876543211122222    11  2599999999954 44444455666664

This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.

>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional

Probab=88.16  E-value=2.7  Score=32.27  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=34.5

Q ss_pred             ChHHHHHHHHHHcCCE---E--EEEeCCCCCH-HHHh---c-cCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCC
Q 031223           35 SFTYNLCQYMGELGYH---F--EVYRNDELTV-EELK---R-KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP   99 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~---~--~v~~~~~~~~-~~~~---~-~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~P   99 (163)
                      ++...+..+|++.|++   +  .+++.+...+ +.+.   . .++|.||.+||.+ +.+.+...+.+++ +++.+|
T Consensus        23 ~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg-~g~rDvTpeAv~~l~~keip   97 (193)
T PRK09417         23 KGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG-PARRDVTPEATLAVADKEMP   97 (193)
T ss_pred             chHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC-CCCCCcHHHHHHHHhCCcCC
Confidence            3455688899998643   2  2333221111 1121   1 2699999999954 4444444556666 354455

>TIGR00177 molyb_syn molybdenum cofactor synthesis domain

Probab=87.94  E-value=3.2  Score=29.97  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      ++...+.+.|++.|+++..+..-..+.+++.    .  .++|.||.+||.+ +.+.+...+.++++
T Consensus        27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g-~g~~D~t~~ai~~~   91 (144)
T TIGR00177        27 SNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTG-VGPRDVTPEALEEL   91 (144)
T ss_pred             CcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCC-CCCCccHHHHHHHh
Confidence            5666788999999998775432111223221    1  3799999999954 44444455566654

The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.

>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)

Probab=87.81  E-value=11  Score=29.35  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCC----CHHHHhccCCCEEEeCCCCC-CCCCChhHHHHHHHhCCCCCEEEEehHHH
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPG-APQDSGISLQTVLELGPTVPLFGVCMGLQ  108 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~----~~~~~~~~~~dgvvl~GG~~-~~~d~~~~~~~i~~~~~~~PvLGIC~G~Q  108 (163)
                      ++....+...|++.|+++++...++.    +.+.+.  ++|.||+.+-.. +.-.......+.+.+.++.=++|+=-|+-
T Consensus        22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~--~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~~   99 (215)
T cd03142          22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLA--ETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGHY   99 (215)
T ss_pred             chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHh--cCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCcC
Confidence            34566788999999999885544321    122343  899999843222 21222223333344577888888766552


Q ss_pred             H--HHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEE
Q 031223          109 C--IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSI  153 (163)
Q Consensus       109 l--La~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v  153 (163)
                      -  ...-.||.-....  ...+....+.+... ++|+.+|+|+.|..
T Consensus       100 s~~y~~lvGg~f~~~~--h~~~~~~~v~v~~p-~HPIt~Gl~~~f~~  143 (215)
T cd03142         100 SKIFKKLMGTTCTLKW--REAGERERVWVVEP-GHPITDGIPEYIEL  143 (215)
T ss_pred             CHHHHHhhCCccccee--cCCCceeEEEEecC-CCchhcCCCCcccc
Confidence            1  1122566531110  01122223443332 68999999886654

Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.

>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=87.59  E-value=3.6  Score=30.35  Aligned_cols=96  Identities=18%  Similarity=0.196  Sum_probs=56.9

Q ss_pred             CChhhHhhHHhhhcCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC--
Q 031223            7 VPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--   84 (163)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~--   84 (163)
                      +....+.+++..-+.=..-.+++||.+ +....+.++|.... .+.++.+...-...+....---++++||.-.+...  
T Consensus         2 n~~~K~~IA~~A~~~I~~~~~Ifld~G-tT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~   79 (161)
T PF00455_consen    2 NAEEKRAIARKAASLIEDGDTIFLDSG-TTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSF   79 (161)
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEECc-hHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcE
Confidence            344556666666444444558899975 56667888888763 55566554111233332222346677885544332  


Q ss_pred             --hhHHHHHHHhCCCCCEEEEe
Q 031223           85 --GISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        85 --~~~~~~i~~~~~~~PvLGIC  104 (163)
                        ....+.++++.-++-++|+|
T Consensus        80 ~G~~a~~~l~~~~~d~afi~~~  101 (161)
T PF00455_consen   80 VGPIALEALRQFRFDKAFIGAD  101 (161)
T ss_pred             ECchHHHHHHhhccceEEeccc
Confidence              23567778876668888766

This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].

>PRK05568 flavodoxin; Provisional

Probab=87.34  E-value=8.3  Score=27.24  Aligned_cols=77  Identities=17%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             eEEEE-ECCCChHHHHHHHH----HHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC---ChhHHHHHHHh---
Q 031223           26 PIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLEL---   94 (163)
Q Consensus        26 ~Ilvi-d~~~~~~~~~~~~l----~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d---~~~~~~~i~~~---   94 (163)
                      +++|+ .-..+++..+++++    ++.|+++++++..+.+..++.  ++|+||+ |.|--...   ...+..++.++   
T Consensus         3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp~y~~~~~~~~~~~~f~~~~~~~   79 (142)
T PRK05568          3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSPAMGDEVLEEGEMEPFVESISSL   79 (142)
T ss_pred             eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECCccCcccccchhHHHHHHHhhhh
Confidence            35555 33445777766655    446888888876544444554  7999998 55531111   12344444443   


Q ss_pred             CCCCCEEEEeh
Q 031223           95 GPTVPLFGVCM  105 (163)
Q Consensus        95 ~~~~PvLGIC~  105 (163)
                      .+++++.-+|-
T Consensus        80 ~~~k~~~~f~t   90 (142)
T PRK05568         80 VKGKKLVLFGS   90 (142)
T ss_pred             hCCCEEEEEEc
Confidence            25677666554

>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional

Probab=87.18  E-value=6.7  Score=33.71  Aligned_cols=56  Identities=14%  Similarity=-0.008  Sum_probs=32.7

Q ss_pred             ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHH
Q 031223           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTV   91 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i   91 (163)
                      ++...+..+|++.|+++..+..-..+.+.+    ..  .++|.||++||. +..+.+...+.+
T Consensus       220 sN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~-S~G~~D~v~~~l  281 (419)
T PRK14690        220 ANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGA-SAGDEDHVSALL  281 (419)
T ss_pred             CHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCc-cCCCcchHHHHH
Confidence            455568889999999876443211122322    21  369999999984 444443333333

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional

Probab=87.14  E-value=4.2  Score=30.04  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      ++|+++|....+...+...|...|+++............+....+|.+++--.... .+.-...+.+++.....|++-+.
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~lt   79 (219)
T PRK10336          1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLILT   79 (219)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEEE
Confidence            47999987666677788888888887755432111122233346898887432111 11112344455444568888875

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.10  E-value=1.9  Score=34.64  Aligned_cols=66  Identities=9%  Similarity=0.049  Sum_probs=42.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (163)
                      ||..++.+.+.....+...|++.=-..   ..        ...++|.+|..||-+      .+...++.+ ..++|++||
T Consensus         1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~---~~--------~~~~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGI   63 (259)
T PRK00561          1 MKYKIFASTTPQTEPVLPKLKKVLKKK---LA--------VEDGADYLFVLGGDG------FFVSTAANYNCAGCKVVGI   63 (259)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHhhC---CC--------ccCCCCEEEEECCcH------HHHHHHHHhcCCCCcEEEE
Confidence            467888877666656666665410000   00        012589999999954      356666665 578999999


Q ss_pred             ehHH
Q 031223          104 CMGL  107 (163)
Q Consensus       104 C~G~  107 (163)
                      =.|.
T Consensus        64 N~G~   67 (259)
T PRK00561         64 NTGH   67 (259)
T ss_pred             ecCC
Confidence            9874

>PRK15029 arginine decarboxylase; Provisional

Probab=86.80  E-value=4  Score=37.71  Aligned_cols=78  Identities=9%  Similarity=0.027  Sum_probs=46.4

Q ss_pred             CeEEEEECCCC--------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-----hHHHH
Q 031223           25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT   90 (163)
Q Consensus        25 ~~Ilvid~~~~--------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-----~~~~~   90 (163)
                      |+|+|||....        ....+.+.|++.|+++............+.. .++|.||+-=.  -+...+     ++.+.
T Consensus         1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~--LPd~dG~~~~~ell~~   78 (755)
T PRK15029          1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_pred             CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECC--CCCCccchhHHHHHHH
Confidence            47999976542        3667888999999998866532111223333 36999998311  111111     34455


Q ss_pred             HHHhCCCCCEEEEe
Q 031223           91 VLELGPTVPLFGVC  104 (163)
Q Consensus        91 i~~~~~~~PvLGIC  104 (163)
                      ||+...++||+-+.
T Consensus        79 IR~~~~~iPIIlLT   92 (755)
T PRK15029         79 LHERQQNVPVFLLG   92 (755)
T ss_pred             HHhhCCCCCEEEEE
Confidence            55544578998775

>PRK10161 transcriptional regulator PhoB; Provisional

Probab=86.44  E-value=5  Score=30.12  Aligned_cols=81  Identities=11%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv  100 (163)
                      |..+|+++|........+.+.|+..|+.+..........+.+....+|.+++--.... .+.-...+.+++.  ....|+
T Consensus         1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv   79 (229)
T PRK10161          1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV   79 (229)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence            3467999998666677788889888887764432111122233346898887332111 1212234444442  246788


Q ss_pred             EEEe
Q 031223          101 FGVC  104 (163)
Q Consensus       101 LGIC  104 (163)
                      +-++
T Consensus        80 i~ls   83 (229)
T PRK10161         80 VMLT   83 (229)
T ss_pred             EEEE
Confidence            8765

>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional

Probab=86.39  E-value=7  Score=33.50  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=28.3

Q ss_pred             ChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223           35 SFTYNLCQYMGELGYHFEVYRNDELTVEEL----K--RKNPRGVLISPGPG   79 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~--~~~~dgvvl~GG~~   79 (163)
                      ++...+..+|++.|+++..+..-..+.+.+    .  ..++|.||.+||.+
T Consensus       204 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S  254 (411)
T PRK10680        204 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS  254 (411)
T ss_pred             hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence            345568888999999876543211123322    1  13699999999954

>PLN02935 Bifunctional NADH kinase/NAD(+) kinase

Probab=86.25  E-value=4.1  Score=35.84  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=46.6

Q ss_pred             CeEEEEECCCC-----hHHHHHHHHH-HcCCEEEEEeCCCC----------------CHHHHh--ccCCCEEEeCCCCCC
Q 031223           25 NPIIVIDNYDS-----FTYNLCQYMG-ELGYHFEVYRNDEL----------------TVEELK--RKNPRGVLISPGPGA   80 (163)
Q Consensus        25 ~~Ilvid~~~~-----~~~~~~~~l~-~~G~~~~v~~~~~~----------------~~~~~~--~~~~dgvvl~GG~~~   80 (163)
                      .+|+||-+...     ....+.+||+ ..|+.+.+-+....                +..++.  ..++|.+|..||-+ 
T Consensus       195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG-  273 (508)
T PLN02935        195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG-  273 (508)
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH-
Confidence            46888855433     2334777887 47887766432100                001111  12589999999954 


Q ss_pred             CCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223           81 PQDSGISLQTVLEL-GPTVPLFGVCMG  106 (163)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G  106 (163)
                           .+....+.+ ...+|||||=.|
T Consensus       274 -----TlL~Aar~~~~~~iPILGIN~G  295 (508)
T PLN02935        274 -----TVLWAASMFKGPVPPVVPFSMG  295 (508)
T ss_pred             -----HHHHHHHHhccCCCcEEEEeCC
Confidence                 356666665 467999999977

>PRK09836 DNA-binding transcriptional activator CusR; Provisional

Probab=85.84  E-value=5  Score=30.06  Aligned_cols=78  Identities=8%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      |+|++++........+.+.|+..|+.+..........+.+....+|.+++--..  +... -...+.+++.....|++-+
T Consensus         1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~~--~~~~g~~~~~~lr~~~~~~pii~l   78 (227)
T PRK09836          1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGWDIVRMLRSANKGMPILLL   78 (227)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCCEEEE
Confidence            479999986666777888898888866544321111122223468988873221  1111 1234444543456888766


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      -
T Consensus        79 s   79 (227)
T PRK09836         79 T   79 (227)
T ss_pred             E
Confidence            3

>PLN02727 NAD kinase

Probab=85.77  E-value=3.7  Score=38.74  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             CCeEEEEECCCCh----HHHHHHHHHHc-CCEEEEEeCCCC-----------------CHHHHhccCCCEEEeCCCCCCC
Q 031223           24 KNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAP   81 (163)
Q Consensus        24 ~~~Ilvid~~~~~----~~~~~~~l~~~-G~~~~v~~~~~~-----------------~~~~~~~~~~dgvvl~GG~~~~   81 (163)
                      ..+|+||-....-    ...+.+||.+. |+++.+-+....                 ..+++ ..++|.+|..||-+  
T Consensus       678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el-~~~~DLVIvLGGDG--  754 (986)
T PLN02727        678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDL-HERVDFVACLGGDG--  754 (986)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhc-ccCCCEEEEECCcH--
Confidence            3578999554331    23478899886 887765422100                 00111 12589999999954  


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                          .+....+.+ ...+|||||=+|.
T Consensus       755 ----TlLrAar~~~~~~iPILGINlGr  777 (986)
T PLN02727        755 ----VILHASNLFRGAVPPVVSFNLGS  777 (986)
T ss_pred             ----HHHHHHHHhcCCCCCEEEEeCCC
Confidence                356666665 5679999999884

>PRK03673 hypothetical protein; Provisional

Probab=85.37  E-value=6.1  Score=33.74  Aligned_cols=46  Identities=13%  Similarity=0.183  Sum_probs=29.9

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dgvvl~GG~~   79 (163)
                      +++...+.++|.+.|+++.....-..+.+.+.      ..++|.||++||-+
T Consensus        20 dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlG   71 (396)
T PRK03673         20 DTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLG   71 (396)
T ss_pred             EhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCC
Confidence            35566788999999998764432111233332      13699999999965

>PRK09271 flavodoxin; Provisional

Probab=84.77  E-value=6.4  Score=28.84  Aligned_cols=53  Identities=15%  Similarity=0.063  Sum_probs=29.1

Q ss_pred             CeEEEEE-CCCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHH--hccCCCEEEeCCCC
Q 031223           25 NPIIVID-NYDSFTYN----LCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGP   78 (163)
Q Consensus        25 ~~Ilvid-~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~--~~~~~dgvvl~GG~   78 (163)
                      |+|+|+= -..+++..    +.+.|++.|+++++.........++  ...++|+|+| |.|
T Consensus         1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vil-gt~   60 (160)
T PRK09271          1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLL-GTW   60 (160)
T ss_pred             CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEE-ECc
Confidence            4666662 22345554    4455666788887776432222222  1236899888 443

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=84.71  E-value=4.5  Score=35.27  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (163)
                      ++..+|+|||-..+....+...|...|+.+.....-....+.+....+|.|++ .=. .|... -.+.+.+++...+.|+
T Consensus         2 ~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~-Di~-mp~~~Gl~ll~~i~~~~~~~pV   79 (464)
T COG2204           2 MMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLL-DIR-MPGMDGLELLKEIKSRDPDLPV   79 (464)
T ss_pred             CCcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE-ecC-CCCCchHHHHHHHHhhCCCCCE
Confidence            34567999998777788899999999998877753211123333334665554 321 22222 2345556665567887


Q ss_pred             EEE
Q 031223          101 FGV  103 (163)
Q Consensus       101 LGI  103 (163)
                      +-|
T Consensus        80 I~~   82 (464)
T COG2204          80 IVM   82 (464)
T ss_pred             EEE
Confidence            755

>PRK06756 flavodoxin; Provisional

Probab=84.66  E-value=9.6  Score=27.27  Aligned_cols=78  Identities=12%  Similarity=0.001  Sum_probs=42.5

Q ss_pred             CeEEEEE-CCCChHHHHHH----HHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCC-CCCCh-hHHHHHHHh--
Q 031223           25 NPIIVID-NYDSFTYNLCQ----YMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGA-PQDSG-ISLQTVLEL--   94 (163)
Q Consensus        25 ~~Ilvid-~~~~~~~~~~~----~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~-~~d~~-~~~~~i~~~--   94 (163)
                      ++|+||= -..+.+..+++    .+++.|.++++.+.... ...++.  ++|+|++ |.|-- ....+ .+.+++.++  
T Consensus         2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~-gspt~~~g~~p~~~~~fl~~l~~   78 (148)
T PRK06756          2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYTWGDGDLPDDFLDFYDAMDS   78 (148)
T ss_pred             ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEE-EeCCCCCCCCcHHHHHHHHHHhc
Confidence            4677773 23345655554    45556888887764322 233443  7999988 54331 12222 245555442  


Q ss_pred             -C-CCCCEEEEeh
Q 031223           95 -G-PTVPLFGVCM  105 (163)
Q Consensus        95 -~-~~~PvLGIC~  105 (163)
                       + +++|+.-++.
T Consensus        79 ~~l~~k~~~~fgt   91 (148)
T PRK06756         79 IDLTGKKAAVFGS   91 (148)
T ss_pred             CCCCCCEEEEEeC
Confidence             2 5778776655

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=84.61  E-value=11  Score=32.43  Aligned_cols=58  Identities=17%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhc--------------cCCCEEEeCCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGP   78 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~--------------~~~dgvvl~GG~   78 (163)
                      +...++|+|+-.+.+-...++++|.+.|+++...+..... .+++..              .++|.||+|+|-
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi   76 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI   76 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence            3344689999998777766899999999998877543111 112210              158999999985

>PRK00549 competence damage-inducible protein A; Provisional

Probab=84.15  E-value=9.1  Score=32.80  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223           34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG   79 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~~~dgvvl~GG~~   79 (163)
                      +++...+.++|++.|+++....  .|+  .+.+    .  ..++|.||++||-+
T Consensus        19 DtN~~~L~~~L~~~G~~v~~~~~v~Dd--~~~I~~~l~~a~~~~DlVItTGGlG   70 (414)
T PRK00549         19 NTNAQFLSEKLAELGIDVYHQTVVGDN--PERLLSALEIAEERSDLIITTGGLG   70 (414)
T ss_pred             EhhHHHHHHHHHHCCCeEEEEEEeCCC--HHHHHHHHHHhccCCCEEEECCCCC
Confidence            4456678899999998766432  231  2222    1  24799999999965

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=83.78  E-value=2.2  Score=28.17  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~   80 (163)
                      ||+|=+.    ..++.++|++.|++++-+...    .+.  .++|++|++|-..+
T Consensus         3 kIAVE~~----Ls~v~~~L~~~GyeVv~l~~~----~~~--~~~daiVvtG~~~n   47 (80)
T PF03698_consen    3 KIAVEEG----LSNVKEALREKGYEVVDLENE----QDL--QNVDAIVVTGQDTN   47 (80)
T ss_pred             eEEecCC----chHHHHHHHHCCCEEEecCCc----ccc--CCcCEEEEECCCcc
Confidence            4555432    337889999999988766432    222  37999999997554

>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional

Probab=83.64  E-value=8.9  Score=29.14  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             CeEEEEECC-CChHHHHH----HHHHH-cCCEEEEEeC
Q 031223           25 NPIIVIDNY-DSFTYNLC----QYMGE-LGYHFEVYRN   56 (163)
Q Consensus        25 ~~Ilvid~~-~~~~~~~~----~~l~~-~G~~~~v~~~   56 (163)
                      ++|+||-.- .+.+..++    +.+++ .|+++++++.
T Consensus         2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l   39 (200)
T PRK03767          2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV   39 (200)
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence            368888542 23555544    44555 7888888865

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional

Probab=83.50  E-value=9.5  Score=28.33  Aligned_cols=78  Identities=15%  Similarity=0.160  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|++||........+...|...|+.+............+....+|.+++.-..  +... -.+.+.+++. ...|++.
T Consensus         2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~~-~~~~ii~   78 (221)
T PRK10766          2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINL--PGEDGLMLTRELRSR-STVGIIL   78 (221)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCCEEE
Confidence            4579999886556667888888888876544321111122333468988874321  1111 1234444442 4578877


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        79 l~   80 (221)
T PRK10766         79 VT   80 (221)
T ss_pred             EE
Confidence            64

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV

Probab=83.25  E-value=18  Score=27.50  Aligned_cols=32  Identities=16%  Similarity=0.158  Sum_probs=19.5

Q ss_pred             CeEEEEEC-CCChHHHHHHHH----HHc-CCEEEEEeC
Q 031223           25 NPIIVIDN-YDSFTYNLCQYM----GEL-GYHFEVYRN   56 (163)
Q Consensus        25 ~~Ilvid~-~~~~~~~~~~~l----~~~-G~~~~v~~~   56 (163)
                      ++|+||-. ..+.+..+.+++    ++. |+++++++.
T Consensus         1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v   38 (197)
T TIGR01755         1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV   38 (197)
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            36788833 234566655544    444 888888764

This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.

>PRK03094 hypothetical protein; Provisional

Probab=83.09  E-value=2  Score=28.32  Aligned_cols=38  Identities=11%  Similarity=0.203  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCC
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~   80 (163)
                      ...+.++|++.|++++-+...    .+.  ..+|++|++|-..+
T Consensus        10 Ls~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n   47 (80)
T PRK03094         10 LTDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSN   47 (80)
T ss_pred             cHHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcc
Confidence            346889999999998766431    122  37999999997554

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=83.01  E-value=12  Score=26.51  Aligned_cols=79  Identities=13%  Similarity=0.001  Sum_probs=38.0

Q ss_pred             CeEEEEE-CCCChHHHHHHHH----HHcCCEEE-EEeCCCC--CHHHHhccCCCEEEeCCCCC-CCCCC-hhHHHHHHHh
Q 031223           25 NPIIVID-NYDSFTYNLCQYM----GELGYHFE-VYRNDEL--TVEELKRKNPRGVLISPGPG-APQDS-GISLQTVLEL   94 (163)
Q Consensus        25 ~~Ilvid-~~~~~~~~~~~~l----~~~G~~~~-v~~~~~~--~~~~~~~~~~dgvvl~GG~~-~~~d~-~~~~~~i~~~   94 (163)
                      |+++||= -..+.+..+++.+    .+.|.+++ +.+..+.  ...++  .++|.||| |.|- ..... +....++.++
T Consensus         1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~d~iil-gs~t~~~g~~p~~~~~fl~~l   77 (140)
T TIGR01754         1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDP--ENYDLVFL-GTWTWERGRTPDEMKDFIAEL   77 (140)
T ss_pred             CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCCh--hhCCEEEE-EcCeeCCCcCCHHHHHHHHHh
Confidence            4666762 2334566655554    44577766 2322110  11122  36898888 5432 22222 2455666664


Q ss_pred             -CCCCCEEEEehH
Q 031223           95 -GPTVPLFGVCMG  106 (163)
Q Consensus        95 -~~~~PvLGIC~G  106 (163)
                       .+++.+.-++.|
T Consensus        78 ~~~~k~~avfgtg   90 (140)
T TIGR01754        78 GYKPSNVAIFGTG   90 (140)
T ss_pred             cccCCEEEEEEcC
Confidence             345555434433

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>PRK13435 response regulator; Provisional

Probab=82.79  E-value=7.8  Score=27.01  Aligned_cols=87  Identities=8%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      +..++|+|++........+.+.|...|+.+.....+... ...+....+|.+|+--......+.-...+.+++ ....|+
T Consensus         3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~-~~~~pi   81 (145)
T PRK13435          3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSA-DGGVEV   81 (145)
T ss_pred             cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHh-CCCCCE
Confidence            345789999986666767888888888775433222111 111223468988883321100111122333333 246899


Q ss_pred             EEEehHHHH
Q 031223          101 FGVCMGLQC  109 (163)
Q Consensus       101 LGIC~G~Ql  109 (163)
                      +-++--.+.
T Consensus        82 i~ls~~~~~   90 (145)
T PRK13435         82 VFMTGNPER   90 (145)
T ss_pred             EEEeCCHHH
Confidence            988765553

>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2

Probab=82.73  E-value=3.2  Score=33.49  Aligned_cols=36  Identities=17%  Similarity=0.355  Sum_probs=26.6

Q ss_pred             ccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           66 RKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        66 ~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                      ..++|.+|..||-+      .++...+.+ ..++|++||=.|.
T Consensus        74 ~~~~D~ii~lGGDG------T~L~~~~~~~~~~~Pilgin~G~  110 (285)
T PF01513_consen   74 EEGVDLIIVLGGDG------TFLRAARLFGDYDIPILGINTGT  110 (285)
T ss_dssp             CCCSSEEEEEESHH------HHHHHHHHCTTST-EEEEEESSS
T ss_pred             ccCCCEEEEECCCH------HHHHHHHHhccCCCcEEeecCCC
Confidence            35899999999943      456667775 3589999998874

7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....

>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain

Probab=82.62  E-value=12  Score=32.03  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--ccCCCEEEeCCCCC
Q 031223           34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RKNPRGVLISPGPG   79 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~~~dgvvl~GG~~   79 (163)
                      +++...+.++|++.|+++....  .|  +.+.+    .  ..++|.||++||-+
T Consensus        19 dtN~~~l~~~L~~~G~~v~~~~~v~D--d~~~i~~~l~~a~~~~DlVIttGGlg   70 (413)
T TIGR00200        19 NTNAQWLADFLAHQGLPLSRRTTVGD--NPERLKTIIRIASERADVLIFNGGLG   70 (413)
T ss_pred             EchHHHHHHHHHHCCCeEEEEEEeCC--CHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            3456678899999998876332  22  12222    1  13799999999955

cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species

>PRK03670 competence damage-inducible protein A; Provisional

Probab=82.57  E-value=13  Score=29.81  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=28.0

Q ss_pred             ChHHHHHHHHHHcCCEEEEEe--CCCCC--HHHHh---ccCCCEEEeCCCCC
Q 031223           35 SFTYNLCQYMGELGYHFEVYR--NDELT--VEELK---RKNPRGVLISPGPG   79 (163)
Q Consensus        35 ~~~~~~~~~l~~~G~~~~v~~--~~~~~--~~~~~---~~~~dgvvl~GG~~   79 (163)
                      ++...+.++|.+.|+++....  .|+..  .+.+.   ...+|.||++||-+
T Consensus        20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG   71 (252)
T PRK03670         20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG   71 (252)
T ss_pred             hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence            455568899999999876433  22111  11221   12489999999965

>PRK09390 fixJ response regulator FixJ; Provisional

Probab=82.29  E-value=13  Score=26.69  Aligned_cols=81  Identities=14%  Similarity=0.208  Sum_probs=44.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      .+.+|+++|........+.+.|...|+.+............+....+|.+++--... ..+.-.....+++.....|++-
T Consensus         2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~~-~~~~~~~~~~l~~~~~~~~ii~   80 (202)
T PRK09390          2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMP-GIDGIELLRRLKARGSPLPVIV   80 (202)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCCCEEE
Confidence            346799998865566678888888887765443210011222234688777732211 1111223444555445688887


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        81 l~   82 (202)
T PRK09390         81 MT   82 (202)
T ss_pred             EE
Confidence            65

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=82.22  E-value=8.5  Score=28.39  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=43.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      ++|+++|....+...+...|...|+.+............+....+|.+++--..  +... -...+.+++.....|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~~~~~pii~l   78 (222)
T PRK10643          1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGL--PDEDGLHLLRRWRQKKYTLPVLIL   78 (222)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECCC--CCCCHHHHHHHHHhcCCCCcEEEE
Confidence            479999886666777888888888876544321111122223468877773221  1111 1233444443456788766


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      .
T Consensus        79 s   79 (222)
T PRK10643         79 T   79 (222)
T ss_pred             E
Confidence            3

>cd03522 MoeA_like MoeA_like

Probab=82.16  E-value=15  Score=30.35  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=40.8

Q ss_pred             CCeEEEEECC---------CChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----h---ccCCCEEEeCCCCCCCCCChhH
Q 031223           24 KNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----K---RKNPRGVLISPGPGAPQDSGIS   87 (163)
Q Consensus        24 ~~~Ilvid~~---------~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~---~~~~dgvvl~GG~~~~~d~~~~   87 (163)
                      .+++.||.-+         +++...+..+|++.|+++..+..-..+.+.+    .   ...+|.||++||. ++...+..
T Consensus       159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGt-svg~~D~t  237 (312)
T cd03522         159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGA-SVDPDDVT  237 (312)
T ss_pred             CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCc-ccCCcchH
Confidence            3678888432         3455668889999999876443110122222    1   1238999999984 44444444


Q ss_pred             HHHHHHh
Q 031223           88 LQTVLEL   94 (163)
Q Consensus        88 ~~~i~~~   94 (163)
                      .+.++++
T Consensus       238 p~Ai~~~  244 (312)
T cd03522         238 PAAIRAA  244 (312)
T ss_pred             HHHHHhc
Confidence            5555554

This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=81.45  E-value=8.2  Score=29.51  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             HHHHHHHHcCCEEEEEeCCCCCH------HHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~~~~------~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      .+.+++++.|+.+.+...+....      +.+...++||+|+.+...    ...   ..+...+++|+..++
T Consensus        20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~---~~~~~~~~ipvv~~~   84 (267)
T cd06284          20 GIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPT---ALTALAKLPPIVQAC   84 (267)
T ss_pred             HHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHH---HHHHHhcCCCEEEEe
Confidence            46667778898887765432111      112234789999865421    111   112233567877654

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>CHL00148 orf27 Ycf27; Reviewed

Probab=81.40  E-value=13  Score=27.82  Aligned_cols=80  Identities=18%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      .++|+++|....+...+.+.|...|+.+............+....+|.+++--.... .+.-...+.+++. ...|++.+
T Consensus         6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~-~~g~~~~~~l~~~-~~~~ii~l   83 (240)
T CHL00148          6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPK-LDGYGVCQEIRKE-SDVPIIML   83 (240)
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHhc-CCCcEEEE
Confidence            468999998766777788888888877654321101112233346898887332111 1111234444443 46898888


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      +-
T Consensus        84 s~   85 (240)
T CHL00148         84 TA   85 (240)
T ss_pred             EC
Confidence            63

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=81.34  E-value=2.7  Score=32.95  Aligned_cols=79  Identities=20%  Similarity=0.313  Sum_probs=50.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHH-hCCCCCEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGPTVPLFG  102 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~-~~~~~PvLG  102 (163)
                      ++|+||+-.......+...|...|+++..........+.+... ||.||+==+  -|.-.+ .+...+|+ .....||+-
T Consensus         1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~--lP~~dG~~~~~~iR~~~~~~~PIi~   77 (229)
T COG0745           1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLM--LPDLDGLELCRRLRAKKGSGPPIIV   77 (229)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECC--CCCCCHHHHHHHHHhhcCCCCcEEE
Confidence            5799998766677789999999999998875321112333334 999988221  122222 34555664 245678888


Q ss_pred             EehH
Q 031223          103 VCMG  106 (163)
Q Consensus       103 IC~G  106 (163)
                      +.--
T Consensus        78 Lta~   81 (229)
T COG0745          78 LTAR   81 (229)
T ss_pred             EECC
Confidence            8765

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB

Probab=81.12  E-value=8.1  Score=28.54  Aligned_cols=80  Identities=9%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~PvL  101 (163)
                      ..+|+++|....+...+...|...|+.+............+....+|.+++--.... .+.-...+.+++.  ....|++
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~ii   80 (226)
T TIGR02154         2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIPII   80 (226)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCCEE
Confidence            467999998666677788888888887654332111112233346898887322111 1111233444432  2467888


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -++
T Consensus        81 ~ls   83 (226)
T TIGR02154        81 MLT   83 (226)
T ss_pred             EEe
Confidence            775

PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.

>PRK09191 two-component response regulator; Provisional

Probab=81.11  E-value=10  Score=29.20  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      ....+|+++|....+...+...|+..|+.+.....+.. ....+....+|.+|+--......+.-...+.+++.. ..|+
T Consensus       135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pi  213 (261)
T PRK09191        135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTF-DVPV  213 (261)
T ss_pred             cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCE
Confidence            34467999998666666788888888877653322211 122233346898888432110011112233344333 6898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus       214 i~ls~  218 (261)
T PRK09191        214 IFITA  218 (261)
T ss_pred             EEEeC
Confidence            86644

>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin

Probab=80.86  E-value=0.24  Score=28.21  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=11.5

Q ss_pred             CEEEEehHHHHHHHHhC
Q 031223           99 PLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (163)
                      -..|.|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T PF09075_consen   31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SS--TTTTTHHHHTTT-
T ss_pred             Cccccccchhhhhhccc
Confidence            45799999999987654

The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.

>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.77  E-value=8.2  Score=31.09  Aligned_cols=64  Identities=19%  Similarity=0.125  Sum_probs=42.4

Q ss_pred             eEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C-CCCC
Q 031223           26 PIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVP   99 (163)
Q Consensus        26 ~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~-~~~P   99 (163)
                      ++.++-+....    ...+.++|++.|+++..-         .  .++|.+|..||-+      .+....+.+ . .++|
T Consensus         4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~---------~--~~~D~vi~lGGDG------T~L~a~~~~~~~~~~p   66 (264)
T PRK03501          4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH---------P--KNANIIVSIGGDG------TFLQAVRKTGFREDCL   66 (264)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC---------C--CCccEEEEECCcH------HHHHHHHHhcccCCCe
Confidence            57777664332    223666788888866421         1  2578999999954      356666665 2 3789


Q ss_pred             EEEEeh-H
Q 031223          100 LFGVCM-G  106 (163)
Q Consensus       100 vLGIC~-G  106 (163)
                      ++||=. |
T Consensus        67 ilgIn~~G   74 (264)
T PRK03501         67 YAGISTKD   74 (264)
T ss_pred             EEeEecCC
Confidence            999999 7

>PRK11173 two-component response regulator; Provisional

Probab=80.67  E-value=12  Score=28.36  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|++++........+...|+..|+.+............+....+|.+++--..  +... -...+.+++ ....|++-
T Consensus         3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l--~~~~g~~~~~~lr~-~~~~pii~   79 (237)
T PRK11173          3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINL--PGKNGLLLARELRE-QANVALMF   79 (237)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCC--CCCCHHHHHHHHhc-CCCCCEEE
Confidence            3579999876566777888898889876654321111222333468988873221  1111 123334443 24678877


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        80 lt   81 (237)
T PRK11173         80 LT   81 (237)
T ss_pred             EE
Confidence            65

>smart00448 REC cheY-homologous receiver domain

Probab=80.27  E-value=4.6  Score=21.04  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=28.1

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl   74 (163)
                      ++++++........+.+.+...|..+...+........+....++.+++
T Consensus         2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~   50 (55)
T smart00448        2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL   50 (55)
T ss_pred             eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            5788887555666677888888877544432111112222235777766

CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.

>PRK06242 flavodoxin; Provisional

Probab=80.26  E-value=10  Score=27.01  Aligned_cols=75  Identities=13%  Similarity=0.020  Sum_probs=40.1

Q ss_pred             CeEEEEECC--CChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-C-CCC
Q 031223           25 NPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-G-PTV   98 (163)
Q Consensus        25 ~~Ilvid~~--~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-~-~~~   98 (163)
                      |+++||-.-  .+++..+++.+.+ ++.  ++++......+++  .++|.||+ |+|--.. -.+.+.+++.++ . +++
T Consensus         1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~--~~~~i~~~~~~~~--~~~d~ii~-g~pvy~~~~~~~~~~fl~~~~~~~~k   75 (150)
T PRK06242          1 MKALIVYASVHHGNTEKIAKAIAEVLDA--EVIDPGDVNPEDL--SEYDLIGF-GSGIYFGKFHKSLLKLIEKLPPVSGK   75 (150)
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHhcCc--EEecHHHCCcccH--hHCCEEEE-eCchhcCCcCHHHHHHHHhhhhhcCC
Confidence            456676442  3678888888865 444  3443221122233  37998988 6652111 123455566553 2 567


Q ss_pred             CEEEEe
Q 031223           99 PLFGVC  104 (163)
Q Consensus        99 PvLGIC  104 (163)
                      |+.-+|
T Consensus        76 ~~~~f~   81 (150)
T PRK06242         76 KAFIFS   81 (150)
T ss_pred             eEEEEE
Confidence            776554

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=80.14  E-value=12  Score=27.38  Aligned_cols=72  Identities=13%  Similarity=0.026  Sum_probs=45.0

Q ss_pred             CCCCeEEEEEC----CCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCC-CChhHHHHHH
Q 031223           22 NNKNPIIVIDN----YDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL   92 (163)
Q Consensus        22 ~~~~~Ilvid~----~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~-d~~~~~~~i~   92 (163)
                      +.++||++.--    ++--..-+.++|++.|+++...... .+.+++-    ..+.|.|++|+=.+.-. ....+.+.++
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr   88 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR   88 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence            56788888833    2223445788999999999877654 3444442    24799999977433211 2234566666


Q ss_pred             Hh
Q 031223           93 EL   94 (163)
Q Consensus        93 ~~   94 (163)
                      +.
T Consensus        89 e~   90 (143)
T COG2185          89 EA   90 (143)
T ss_pred             Hh
Confidence            65

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=80.01  E-value=15  Score=28.28  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             HHHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223           39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (163)
                      .+.+++++.|+.+.+...+...      .+.+...++||+|+.+..  ..+.....+.+.++ ..++|+.-+
T Consensus        20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~--~~~~~~~~~~i~~~~~~~ipvV~i   89 (273)
T cd06292          20 AIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL--HADTHADHSHYERLAERGLPVVLV   89 (273)
T ss_pred             HHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC--CCcccchhHHHHHHHhCCCCEEEE
Confidence            4667777889988776543211      112223579999997642  11211122333332 356776655

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1qdl_B	195	The Crystal Structure Of Anthranilate Synthase From		4e-24
1i7q_B	193	Anthranilate Synthase From S. Marcescens Length = 1		3e-18
1i1q_B	192	Structure Of The Cooperative Allosteric Anthranilat		3e-15
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		1e-07
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		3e-07
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		3e-07
1t36_B	382	Crystal Structure Of E. Coli Carbamoyl Phosphate Sy		1e-06
1m6v_B	382	Crystal Structure Of The G359f (Small Subunit) Poin		3e-06
1jdb_C	382	Carbamoyl Phosphate Synthetase From Escherichia Col		3e-06
1c30_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		4e-05
1a9x_B	379	Carbamoyl Phosphate Synthetase: Caught In The Act O		5e-05
1cs0_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		6e-05
2ywb_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		5e-04

>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 28  IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
           ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D 
Sbjct: 5   LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85  GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
           G+SL  +  LG   P+ GVC+G Q IG AFG KI R    V HGK S +         L 
Sbjct: 65  GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRARKVFHGKISNIILVNNSPLSLY 123
Query: 145 AGLSKYVSISCYN 157
            G++K    + Y+
Sbjct: 124 YGIAKEFKATRYH 136

>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 83/134 (61%), Gaps = 7/134 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 4   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
           +G   + +  L   +P+ G+C+G Q I EA+GG++ ++   ++HGK+S + +D  GE G+
Sbjct: 64  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHD--GE-GM 119
Query: 144 LAGLSKYVSISCYN 157
            AG++  + ++ Y+
Sbjct: 120 FAGMANPLPVARYH 133

>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 82/135 (60%), Gaps = 9/135 (6%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L   KNP  +++SPGPG P 
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 142
           ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK++ + +D +    
Sbjct: 62  EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEHDGQ---A 117
Query: 143 LLAGLSKYVSISCYN 157
           + AGL+  + ++ Y+
Sbjct: 118 MFAGLANPLPVARYH 132

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
           +K+ I+++D    +T  + + + ELG + E++  D +T  +++  NP G+++S GP +  
Sbjct: 6   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82  -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 118
            ++S  + Q V E G  VP+FGVC G+Q +    GG +
Sbjct: 65  EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHV 100

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 23  IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVR 120
           + + VLE      VP+ G+C+G Q I + FGGK+ R
Sbjct: 80  NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGR 115

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP   +++G 
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87  SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVR 120
           + + VLE      VP+ G+C+G Q I + FGGK+ R
Sbjct: 60  NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGR 95

>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302

>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302

>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302

>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302

>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A 
Sbjct: 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 278
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 279 GAKTVKMKFG-HHGGNHPVKDVEK 301

>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 58  ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
           + + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A 
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEK 138
           G K V+   G  HG +  V   EK
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEK 302

>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           ++V+D    +T  + + + EL   F +    +  +EE+ +  P+ +++S GP +  D   
Sbjct: 2   VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
                      +PL G+C G+Q + +  GG++ R+
Sbjct: 61  PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	1e-62
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	5e-61
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	2e-22
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	2e-14
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	8e-11
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	1e-10
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	2e-10
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	2e-10
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	5e-10
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	6e-10
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	8e-09
3uow_A	556	GMP synthetase; structural genomics consortium, SG	2e-08
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	1e-06
2a9v_A	212	GMP synthase; structural genomics, joint center fo	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3m3p_A	250	Glutamine amido transferase; structural genomics,	1e-04
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	1e-04

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score =  189 bits (484), Expect = 1e-62
 Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 4/126 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG P   +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
            G+SL  +  LG   P+ GVC+G Q IG AFG KI R+   V HGK S +         L
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARK-VFHGKISNIILVNNSPLSL 122

Query: 144 LAGLSK 149
             G++K
Sbjct: 123 YYGIAK 128

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score =  186 bits (474), Expect = 5e-61
 Identities = 39/124 (31%), Positives = 73/124 (58%), Gaps = 7/124 (5%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFT+NL   +   G++  +YRN    +  ++ L       +++SPGPG P +
Sbjct: 3   ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
           +G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++HGK++ + +D +    +
Sbjct: 63  AGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGE-ILHGKATSIEHDGQ---AM 118

Query: 144 LAGL 147
            AGL
Sbjct: 119 FAGL 122

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645

 Score = 91.8 bits (228), Expect = 2e-22
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
            +++D  D FT  + Q +  LG   EV    +     +       V++ PGPG P D+G 
Sbjct: 449 ALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDLARYDVVVMGPGPGDPSDAGD 504

Query: 87  SLQTVLE------LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 133
                L       +    P   VC+  Q +    G  +VR  +    G    +
Sbjct: 505 PRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREV-PNQGIQVEI 556

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 20/138 (14%)

Query: 42  QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV---------- 91
           +Y+   G      R D    +          ++ PG           +            
Sbjct: 59  KYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQS 118

Query: 92  LELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED---------G 142
            + G   P++G C+G + +     G+ + +        +  + +                
Sbjct: 119 FDDGDYFPVWGTCLGFEELSLLISGECLLT-ATDTVDVAMPLNFTGGQLHSRMFQNFPTE 177

Query: 143 LLAGLSKYVSISCYNIQC 160
           LL  L+     + ++   
Sbjct: 178 LLLSLAVEPLTANFHKWS 195

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 58.2 bits (142), Expect = 8e-11
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL     +   D   +EE+ +  P+ +++S GP       AP+        +   G  +P
Sbjct: 21  ELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LP 73

Query: 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
           L G+C G+Q + +  GG++ R+     +GK+ L     + E  L  GL  
Sbjct: 74  LLGICYGMQLLAQELGGRVERAGRA-EYGKALL----TRHEGPLFRGLEG 118

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTV 98
           EL    E++  +      +K +  R ++IS GP       AP  D  I       +G   
Sbjct: 51  ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI-----FTIG--K 102

Query: 99  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
           P+ G+C G+Q + + FGG + +  +    G  ++          L  GL K
Sbjct: 103 PVLGICYGMQMMNKVFGGTVHKKSVR-EDGVFNISV---DNTCSLFRGLQK 149

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           EL    E++  +      +K +  R ++IS GP       AP         +  +G   P
Sbjct: 46  ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KP 98

Query: 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
           + G+C G+Q + + FGG + +  +    G  ++          L  GL K
Sbjct: 99  VLGICYGMQMMNKVFGGTVHKKSVR-EDGVFNISV---DNTCSLFRGLQK 144

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           E+G + E+   D +  E ++  NP G+++S GP         +        + E+G   P
Sbjct: 32  EIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CP 84

Query: 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
           + G+C G+Q +    GGK+ R+      G + L          L  G+  
Sbjct: 85  VLGICYGMQTMAYQLGGKVNRTAKA-EFGHAQLRV---LNPAFLFDGIED 130

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 17/110 (15%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
           ELG + E++  D +T  +++  NP G+++S GP       +P+      Q V E G  VP
Sbjct: 29  ELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VP 81

Query: 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
           +FGVC G+Q +    GG +  S      G + +       +  L+ G+  
Sbjct: 82  VFGVCYGMQTMAMQLGGHVEASNER-EFGYAQVEV---VNDSALVRGIED 127

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 99
            LG   ++  N    +EE+K  NP+G++ S GP         +      +   E    VP
Sbjct: 22  YLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VP 74

Query: 100 LFGVCMGLQCIGEAFGGKIVRSP 122
           + G+C+G Q I + FGGK+ R  
Sbjct: 75  ILGICLGHQLIAKFFGGKVGRGE 97

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379

 Score = 52.5 bits (127), Expect = 8e-09
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 60  TVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGG 116
           + E++ + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G 
Sbjct: 223 SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALASGA 280

Query: 117 K 117
           K
Sbjct: 281 K 281

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 27/117 (23%)

Query: 20  SKNNKNPIIVIDNYDSFTYNLCQY-------MGELGYHFEVYRNDELTVEELKRKNPRGV 72
                + I+V++ + S      QY       +  +    E      + ++++K  N +GV
Sbjct: 3   EGEEYDKILVLN-FGS------QYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGV 54

Query: 73  LISPGP------GAPQDSGISLQTVLELGPT--VPLFGVCMGLQCIGEAFGGKIVRS 121
           ++S GP      G+P       + V E      +P+FG+C G+Q I     G++ +S
Sbjct: 55  ILSGGPYSVTEAGSPHLK----KEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKS 107

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 14/117 (11%)

Query: 40  LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP-GAPQDSGIS--------LQT 90
           +     E  + F+     +    E   +    V++  G  GA ++            ++ 
Sbjct: 29  MEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE 88

Query: 91  VLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 147
           +L+    +P  G+C+G Q + +  G  + R   G   G   +   ++  ++      
Sbjct: 89  ILKKE--IPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFV---EKVSDNKFFREF 140

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 27/115 (23%)

Query: 46  ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP--------GAPQDSGISLQTVLELGPT 97
           ELG   ++  ND +   EL      G+++S G                   + + +    
Sbjct: 35  ELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN-- 85

Query: 98  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMH---GKSSLVYYDEKGEDGLLAGLSK 149
            P+ G+C+G Q I   FG  +V++     H   GK+ +        + +  GL  
Sbjct: 86  YPILGICVGAQFIALHFGASVVKAK----HPEFGKTKV---SVMHSENIFGGLPS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 47/150 (31%)

Query: 14  YLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE---------L 64
           Y   K   ++      +D Y  +++        +G+H +   + E              L
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY-FYSH--------IGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLELG-------PTVPLFGVCMG-----LQCIGE 112
           ++K     +      A   SG  L T+ +L           P +   +      L  I E
Sbjct: 504 EQK-----IRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 113 AFGGKIVRSP------LGVMHGKSSLVYYD 136
                ++ S       + +M  +   ++ +
Sbjct: 558 ----NLICSKYTDLLRIALMA-EDEAIFEE 582

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 40  LCQYMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--- 94
              ++      F+V R    +    E++  +  G+ +  GP +  D    + T+L L   
Sbjct: 20  FGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRD 77

Query: 95  --GPTVPLFGVCMGLQCIGEAFGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGL 147
                VP+ G C+G Q + +A GG++  SP   +G +       +     +     G 
Sbjct: 78  AVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR-----AWPQHVPQALEWLGT 130

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 42  QYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGIS---LQTVLE--- 93
            +    G+   + +      E+L +   +   +++  GP +P  +           E   
Sbjct: 19  AWAALRGHDVSMTKVYR--YEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKL 76

Query: 94  ----LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK 149
                     + GVC+G Q +G A+G   + SP     G   +   +    D  L+  S 
Sbjct: 77  IQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNYLISLTEAGKMDSYLSDFSD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.97
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.96
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.96
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.95
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.95
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.95
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.94
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.94
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.94
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.94
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.93
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.92
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.92
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.92
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.89
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.89
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.87
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.84
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.83
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.82
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.8
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.8
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.79
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.77
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.75
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.73
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.73
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.72
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.72
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.69
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.68
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.68
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.67
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.67
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.61
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.16
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.95
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	98.91
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	98.87
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.87
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	98.69
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	98.65
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	98.59
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	98.58
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	98.55
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	98.51
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	98.5
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	98.39
1u9c_A	224	APC35852; structural genomics, protein structure i	98.37
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	98.36
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	98.33
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	98.32
2fex_A	188	Conserved hypothetical protein; structural genomic	98.31
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	98.31
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.28
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	98.22
3n7t_A	247	Macrophage binding protein; seattle structural gen	98.16
3er6_A	209	Putative transcriptional regulator protein; struct	98.14
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	98.13
3gra_A	202	Transcriptional regulator, ARAC family; transcript	98.13
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	98.09
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.08
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	98.07
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	98.04
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	98.01
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	97.91
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	97.89
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	97.8
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	97.79
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	97.58
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	97.43
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	96.92
1t0b_A	252	THUA-like protein; trehalose metabolism, NCS symme	96.39
3grc_A	140	Sensor protein, kinase; protein structure initiati	95.96
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	95.86
2qxy_A	142	Response regulator; regulation of transcription, N	95.66
2gkg_A	127	Response regulator homolog; social motility, recei	95.54
1z0s_A	278	Probable inorganic polyphosphate/ATP-NAD kinase; A	95.23
3jte_A	143	Response regulator receiver protein; structural ge	94.96
2rdm_A	132	Response regulator receiver protein; structural ge	94.9
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	94.87
2rjn_A	154	Response regulator receiver:metal-dependent phosph	94.81
3i42_A	127	Response regulator receiver domain protein (CHEY-	94.78
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	94.73
2qr3_A	140	Two-component system response regulator; structura	94.68
3gt7_A	154	Sensor protein; structural genomics, signal receiv	94.65
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	94.65
2zay_A	147	Response regulator receiver protein; structural ge	94.59
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	94.4
3cnb_A	143	DNA-binding response regulator, MERR family; signa	94.37
1srr_A	124	SPO0F, sporulation response regulatory protein; as	94.29
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	94.29
3nhm_A	133	Response regulator; protein structure initiative I	94.21
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	94.15
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	94.07
3cfy_A	137	Putative LUXO repressor protein; structural genomi	94.04
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	94.04
3kto_A	136	Response regulator receiver protein; PSI-II,struct	93.92
3lua_A	140	Response regulator receiver protein; two-component	93.9
3lte_A	132	Response regulator; structural genomics, PSI, prot	93.89
3f6c_A	134	Positive transcription regulator EVGA; structural	93.88
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	93.88
3cg0_A	140	Response regulator receiver modulated diguanylate	93.79
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	93.76
4e5v_A	281	Putative THUA-like protein; THUA-like proteins, tr	93.67
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	93.57
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	93.48
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	93.47
3crn_A	132	Response regulator receiver domain protein, CHEY-;	93.32
3hdg_A	137	Uncharacterized protein; two-component sensor acti	93.31
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	93.26
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	93.25
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	93.22
2b4a_A	138	BH3024; flavodoxin-like fold, structural genomics,	93.06
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	93.05
3rqi_A	184	Response regulator protein; structural genomics, s	93.02
1u0t_A	307	Inorganic polyphosphate/ATP-NAD kinase; alpha-beta	93.0
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	92.94
1yio_A	208	Response regulatory protein; transcription regulat	92.91
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	92.87
3cz5_A	153	Two-component response regulator, LUXR family; str	92.77
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	92.77
2g2c_A	167	Putative molybdenum cofactor biosynthesis protein;	92.76
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	92.64
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	92.63
2an1_A	292	Putative kinase; structural genomics, PSI, protein	92.61
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	92.59
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	92.56
3heb_A	152	Response regulator receiver domain protein (CHEY);	92.49
3rfq_A	185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	92.49
3r0j_A	250	Possible two component system response transcript	92.47
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	92.42
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	92.41
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	92.36
1ys7_A	233	Transcriptional regulatory protein PRRA; response	92.22
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	92.09
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	92.08
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	92.05
1xhf_A	123	DYE resistance, aerobic respiration control protei	91.73
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	91.54
1zgz_A	122	Torcad operon transcriptional regulatory protein;	91.39
2gwr_A	238	DNA-binding response regulator MTRA; two-component	91.09
4dad_A	146	Putative pilus assembly-related protein; response	91.08
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	90.94
2i2c_A	272	Probable inorganic polyphosphate/ATP-NAD kinase 1;	90.86
1di6_A	195	MOGA, molybdenum cofactor biosynthetic enzyme; MOC	90.77
2zki_A	199	199AA long hypothetical Trp repressor binding prot	90.54
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	90.53
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	90.44
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	90.39
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	90.25
2gk3_A	256	Putative cytoplasmic protein; STM3548, structural	90.21
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	90.09
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	90.06
3c3m_A	138	Response regulator receiver protein; structural ge	89.94
3n53_A	140	Response regulator receiver modulated diguanylate;	89.81
2ark_A	188	Flavodoxin; FMN, structural genomics, PSI, structu	89.57
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	89.42
3hly_A	161	Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein	89.39
1rtt_A	193	Conserved hypothetical protein; protein structure	89.36
3eqz_A	135	Response regulator; structural genomics, unknown f	88.84
3qvl_A	245	Putative hydantoin racemase; isomerase; HET: 5HY;	88.79
2fz5_A	137	Flavodoxin; alpha/beta doubly-wound topology, non-	88.66
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	88.63
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	88.43
3q9s_A	249	DNA-binding response regulator; DNA binding protei	88.42
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	88.08
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	88.06
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	87.9
2oqr_A	230	Sensory transduction protein REGX3; response regul	87.84
2lpm_A	123	Two-component response regulator; transcription re	87.83
3eul_A	152	Possible nitrate/nitrite response transcriptional	87.77
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	87.4
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	87.3
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	86.95
2hqr_A	223	Putative transcriptional regulator; phosporylation	86.9
2a5l_A	200	Trp repressor binding protein WRBA; APC5760, PA094	86.88
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	86.69
1jlj_A	189	Gephyrin; globular alpha/beta fold, structural pro	86.68
2vzf_A	197	NADH-dependent FMN reductase; oxidoreductase; 2.50	86.44
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	86.41
1dc7_A	124	NTRC, nitrogen regulation protein; receiver domain	86.07
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	85.96
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	85.87
3n0r_A	286	Response regulator; sigma factor, receiver, two-co	85.82
2qv0_A	143	Protein MRKE; structural genomics, transcription,	85.78
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	85.67
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	85.51
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	84.81
3c97_A	140	Signal transduction histidine kinase; structural g	84.7
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	84.59
5nul_A	138	Flavodoxin; electron transport, flavoprotein, FMN;	84.55
3fni_A	159	Putative diflavin flavoprotein A 3; alpha-beta pro	84.28
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	83.82
1mb3_A	124	Cell division response regulator DIVK; signal tran	83.42
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	83.3
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	83.26
3eq2_A	394	Probable two-component response regulator; adaptor	83.21
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	83.01
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	82.96
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	82.87
1ydg_A	211	Trp repressor binding protein WRBA; tetramer, stru	82.75
1f4p_A	147	Flavodoxin; electron transport, flavoprotein, FMN,	82.67
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	82.01
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	81.26
3pfn_A	365	NAD kinase; structural genomics consortium, SNP, S	81.03
1dz3_A	130	Stage 0 sporulation protein A; response regulator,	80.87
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	80.59
1ehs_A	48	STB, heat-stable enterotoxin B; disulfide; NMR {Es	80.58
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	80.48
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	80.42

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.97  E-value=1.7e-29  Score=192.31  Aligned_cols=132  Identities=42%  Similarity=0.759  Sum_probs=111.3

Q ss_pred             EEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hhHHHHHHHhCCCCCEEEE
Q 031223           27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        27 Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~~~~~i~~~~~~~PvLGI  103 (163)
                      |+||||+++|+.++.++|++.|++++++++++.+++++...++|||||+||++++.+.   ....++++++++++|+|||
T Consensus         4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI   83 (195)
T 1qdl_B            4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV   83 (195)
T ss_dssp             EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred             EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence            9999999999999999999999999999976445556654479999999999988764   2345777777788999999


Q ss_pred             ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcC--ccccCCCCceEEeeeeecee
Q 031223          104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED--GLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~--~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |+|||+|+.++||++.+.. ..++|..+++.++.  ++  ++|+++|+.+.++++|+++|
T Consensus        84 C~G~QlL~~~~gg~v~~~~-~~~~g~~~~v~~~~--~~~~~l~~~~~~~~~v~~~H~~~v  140 (195)
T 1qdl_B           84 CLGHQAIGYAFGAKIRRAR-KVFHGKISNIILVN--NSPLSLYYGIAKEFKATRYHSLVV  140 (195)
T ss_dssp             THHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECC--SSCCSTTTTCCSEEEEEEEEEEEE
T ss_pred             ehHHHHHHHHhCCEEeccC-CCcCCCceEEEECC--CCHhHHHhcCCCceEEeccccchh
Confidence            9999999999999999886 35677555677654  45  89999999999999999998

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.96  E-value=5.4e-29  Score=189.03  Aligned_cols=133  Identities=30%  Similarity=0.600  Sum_probs=104.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc----cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~----~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      +||+||||++||++++.++|+++|+++++++++ .+.+++..    .+.+++||+|||+++.+.+...++++.+++++|+
T Consensus         1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi   79 (192)
T 1i1q_B            1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI   79 (192)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred             CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence            479999999999999999999999999999976 33344421    1456799999999988766556666666788999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||||+|||+|+.++||++.+.. .+++|+...+...   ++++|+++|+.+.+++||+|+|.
T Consensus        80 lGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~  137 (192)
T 1i1q_B           80 IGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEHD---GQAMFAGLANPLPVARYHSLVGS  137 (192)
T ss_dssp             EEETHHHHHHHHHTSCCCCC----CCSSEEEEEEEC---CCGGGTTSCSSEEEEECCC---C
T ss_pred             EEECcChHHHHHHhCCEEEeCC-CcEecceeEEecC---CChHHhcCCCCcEEEechhhHhh
Confidence            9999999999999999998775 4577876544432   57899999999999999999873

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.96  E-value=9e-28  Score=181.62  Aligned_cols=131  Identities=24%  Similarity=0.445  Sum_probs=108.8

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (163)
                      |||+|||++++|+.++.++|++.|+++++++++. +.+++...++|||||+||+ ++.+.....++++++ ++++|+|||
T Consensus         1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI   78 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI   78 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred             CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence            4699999999999999999999999999999763 5566654479999999998 776655567788875 788999999


Q ss_pred             ehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       104 C~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |+|||+|+.++||++.+.+ ..++|+.+. ....  ++++|+++|+.+.++++|.+.+
T Consensus        79 C~G~Q~l~~~~gg~v~~~~-~~~~G~~~~-~~~~--~~~l~~~~~~~~~~~~~h~~~v  132 (189)
T 1wl8_A           79 CLGHQLIAKFFGGKVGRGE-KAEYSLVEI-EIID--EXEIFKGLPKRLKVWESHMDEV  132 (189)
T ss_dssp             THHHHHHHHHHTCEEEECS-CCSCEEEEE-EESC--C--CCTTSCSEEEEEECCSEEE
T ss_pred             cHHHHHHHHHhCCceecCC-CcccCceeE-EEec--CchHHhCCCCceEEEEEeeeeh
Confidence            9999999999999999976 457899743 4433  5789999999999999999876

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.95  E-value=2e-27  Score=183.38  Aligned_cols=129  Identities=23%  Similarity=0.362  Sum_probs=107.7

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCC-CCCCCCCh---hHHHHHHHhCCCCCE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDSG---ISLQTVLELGPTVPL  100 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG-~~~~~d~~---~~~~~i~~~~~~~Pv  100 (163)
                      +||++||++++|+.++.++|+++|+++++++++. +.+++.  ++|||||+|| |+++++..   .+.+.+.  ++++|+
T Consensus        14 ~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~--~~~~Pi   88 (212)
T 2a9v_A           14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYID--DHNYPI   88 (212)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHH--HCCSCE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHH--hCCCCE
Confidence            6899999999999999999999999999998763 455554  5999999999 88887652   2333332  577999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||||+|||+|+.++||++.+.+ .+++|+. .+.+++  +++||+++++++.++++|++.|.
T Consensus        89 LGIC~G~Qll~~~lGg~v~~~~-~~~~G~~-~v~~~~--~~~l~~~~~~~~~v~~~H~~~v~  146 (212)
T 2a9v_A           89 LGICVGAQFIALHFGASVVKAK-HPEFGKT-KVSVMH--SENIFGGLPSEITVWENHNDEII  146 (212)
T ss_dssp             EEETHHHHHHHHHTTCEEEEEE-EEEEEEE-EEEESC--CCGGGTTCCSEEEEEEEEEEEEE
T ss_pred             EEEChHHHHHHHHhCCEEEcCC-CcccCce-eeEECC--CChhHhcCCCceEEEeEhhhhHh
Confidence            9999999999999999999987 4678996 566654  67899999989999999999883

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=185.49  Aligned_cols=134  Identities=18%  Similarity=0.277  Sum_probs=103.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvL  101 (163)
                      +..+|+|||++++|..++.++|+++|+++++++++ .+.+++...++|||||+||++++++.... .+.++ +++++|+|
T Consensus        23 ~~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~-~~~~~~~~~~~Pil  100 (218)
T 2vpi_A           23 MEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAP-WFDPAIFTIGKPVL  100 (218)
T ss_dssp             CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CC-CCCGGGGTSSCCEE
T ss_pred             cCCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccch-hHHHHHHHcCCCEE
Confidence            34689999999999999999999999999999876 34566654579999999999877543210 01122 36789999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      |||+|||+|+.++||+|.+.+ ..++|+. .+.++.  +++||+++++++.++++|+++|.
T Consensus       101 GIC~G~Qll~~~~GG~v~~~~-~~~~G~~-~v~~~~--~~~l~~~l~~~~~v~~~H~~~v~  157 (218)
T 2vpi_A          101 GICYGMQMMNKVFGGTVHKKS-VREDGVF-NISVDN--TCSLFRGLQKEEVVLLTHGDSVD  157 (218)
T ss_dssp             EETHHHHHHHHHTTCCEEEEE-ECSCEEE-EEEECT--TSGGGTTCCSEEEEEECSEEEES
T ss_pred             EEcHHHHHHHHHhCCceEeCC-CCcccEE-EEEEcc--CChhHhcCCCCcEEeehhhhHhh
Confidence            999999999999999999986 4678986 677764  68999999999999999999983

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.95  E-value=1.1e-27  Score=206.47  Aligned_cols=133  Identities=20%  Similarity=0.359  Sum_probs=102.1

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLG  102 (163)
                      +.+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.+.. ...++ ++.++|+||
T Consensus        10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvLG   87 (527)
T 3tqi_A           10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVLG   87 (527)
T ss_dssp             CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEE
T ss_pred             CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEEE
Confidence            4689999999999999999999999999999876 44556655578999999999998765321 12223 467899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC--------ceEEeeeeeceec
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK--------YVSISCYNIQCFA  162 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~--------~~~v~~~H~~~v~  162 (163)
                      ||+|||+|+.++||+|.+.. .+++|+. .+.+..  +++||+++++        .+.++++|+|.|+
T Consensus        88 IC~G~Qlla~~lGG~V~~~~-~~e~G~~-~v~~~~--~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~  151 (527)
T 3tqi_A           88 ICYGMQTMAYQLGGKVNRTA-KAEFGHA-QLRVLN--PAFLFDGIEDQVSPQGEPLLDVWMSHGDIVS  151 (527)
T ss_dssp             ETHHHHHHHHHSSSCBC------CEEEE-EEEESS--CTTTTSSCCSBCCTTSCCEEEEEEESSSCBC
T ss_pred             EChHHHHHHHHcCCeEEeCC-Cccccce-EEEEcC--CChhhcCCccccccccccceEEEEEcccchh
Confidence            99999999999999999987 5689997 566654  5789999987        6899999999884

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.94  E-value=1.6e-26  Score=199.28  Aligned_cols=134  Identities=23%  Similarity=0.421  Sum_probs=111.2

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvL  101 (163)
                      ..++|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+|
T Consensus         6 ~~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~-~~~~~~~~~g~PvL   83 (525)
T 1gpm_A            6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSP-RAPQYVFEAGVPVF   83 (525)
T ss_dssp             TSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCC-CCCGGGGTSSSCEE
T ss_pred             CCCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCc-chHHHHHHCCCCEE
Confidence            34689999999999999999999999999999976 45677765578999999999988765321 01122 36789999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCC--------ceEEeeeeeceec
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSK--------YVSISCYNIQCFA  162 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~--------~~~v~~~H~~~v~  162 (163)
                      |||+|||+|+.++||+|.+.. .+++|+. .+.+..  +++||+++|+        .+.|+++|+|.|+
T Consensus        84 GIC~G~Qlla~~~GG~V~~~~-~~e~G~~-~v~~~~--~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~  148 (525)
T 1gpm_A           84 GVCYGMQTMAMQLGGHVEASN-EREFGYA-QVEVVN--DSALVRGIEDALTADGKPLLDVWMSHGDKVT  148 (525)
T ss_dssp             EETHHHHHHHHHHTCEEECCS-SCEEEEE-EEEECS--CCTTTTTCCSEECTTSCEEEEEEEEECSEEE
T ss_pred             EEChHHHHHHHHcCCEEEeCC-CcccceE-EEEeCC--CCHhhccCccccccccccceEEEEEccceee
Confidence            999999999999999999987 5789996 566654  5789999998        7999999999983

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.94  E-value=3.8e-26  Score=198.03  Aligned_cols=135  Identities=18%  Similarity=0.296  Sum_probs=110.4

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh--H-HHHHHHh-CCCCCE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--S-LQTVLEL-GPTVPL  100 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~--~-~~~i~~~-~~~~Pv  100 (163)
                      .+|+|||++++|++++.++|+++|+.+++++++ .+.+++...++|||||+|||+++++.+.  + ..+++.+ ++++|+
T Consensus         8 ~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~Pv   86 (556)
T 3uow_A            8 DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPI   86 (556)
T ss_dssp             CEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCE
T ss_pred             CEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCE
Confidence            579999999999999999999999999999976 5567776568999999999999876532  2 2333332 568999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCC-----------------------------cCccccCC-CCc
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG-----------------------------EDGLLAGL-SKY  150 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~-----------------------------~~~lf~~l-p~~  150 (163)
                      ||||+|||+|+.++||+|.+.. ..|+|+. .+.+....                             .++||+++ |+.
T Consensus        87 LGIC~G~QlLa~~lGG~V~~~~-~~E~G~~-~l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~  164 (556)
T 3uow_A           87 FGICYGMQEIAVQMNGEVKKSK-TSEYGCT-DVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDI  164 (556)
T ss_dssp             EEETHHHHHHHHHTTCEEEEEE-EEEEEEE-EEEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSE
T ss_pred             EEECHHHHHHHHHhCCcEecCC-CcccCCc-ceeeccCcccccccceecccccccccccccccccccccchhhcccccCc
Confidence            9999999999999999999987 5788986 45554321                             23899999 899


Q ss_pred             eEEeeeeeceec
Q 031223          151 VSISCYNIQCFA  162 (163)
Q Consensus       151 ~~v~~~H~~~v~  162 (163)
                      +.++++|+|.|.
T Consensus       165 ~~v~~~H~d~V~  176 (556)
T 3uow_A          165 TTVWMNHNDEVT  176 (556)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             eEEEEEccceee
Confidence            999999999873

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.94  E-value=1.6e-26  Score=182.53  Aligned_cols=135  Identities=21%  Similarity=0.348  Sum_probs=107.7

Q ss_pred             CCCeEEEEECCC-ChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHhccCCCEEEeCCCCCCCCCC-h---hHHHHHHH-h
Q 031223           23 NKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS-G---ISLQTVLE-L   94 (163)
Q Consensus        23 ~~~~Ilvid~~~-~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dgvvl~GG~~~~~d~-~---~~~~~i~~-~   94 (163)
                      ++++|+||++.. +...++.++|++.|+++++++++...  ++++  .++|+|||+|||+++++. +   ...++|++ +
T Consensus         2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~--~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~   79 (250)
T 3m3p_A            2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEI--RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAV   79 (250)
T ss_dssp             CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCG--GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCcc--ccCCEEEECCCCCcccccchHHHHHHHHHHHHH
Confidence            356899998865 46889999999999999999864221  1122  379999999999987754 2   24566776 4


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC-CcCccccCCCCceEEeeeeeceec
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~-~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +.++|+||||+|+|+|+.++||+|.+.+ .+++||. ++.++.. ..++|| ++|+.+.|++||+|+|+
T Consensus        80 ~~~~PvlGIC~G~Qll~~~lGG~V~~~~-~~e~G~~-~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v~  145 (250)
T 3m3p_A           80 AQRVPVIGHCLGGQLLAKAMGGEVTDSP-HAEIGWV-RAWPQHVPQALEWL-GTWDELELFEWHYQTFS  145 (250)
T ss_dssp             HHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEE-EEEECSSHHHHHHH-SCSSCEEEEEEEEEEEC
T ss_pred             HcCCCEEEECHHHHHHHHHhCCEEEeCC-CCceeeE-EEEEecCCCCcccc-cCCCccEEEEEccceee
Confidence            6789999999999999999999999997 5789997 6776542 236899 89999999999999885

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.94  E-value=1.3e-26  Score=198.85  Aligned_cols=130  Identities=23%  Similarity=0.421  Sum_probs=106.4

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEe
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC  104 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC  104 (163)
                      ||+|||++++|++++.++++++|+.+++++++ .+.+++...++|||||+|||+++++.... ...++ ++.++|+||||
T Consensus         1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~-~~~~~~~~~~~PvLGIC   78 (503)
T 2ywb_A            1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAP-RPDPRLFSSGLPLLGIC   78 (503)
T ss_dssp             CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCC-CCCGGGGCSSCCEEEET
T ss_pred             CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCc-chHHHHHhCCCCEEEEC
Confidence            49999999999999999999999999999986 46777765578999999999988764321 01122 36789999999


Q ss_pred             hHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       105 ~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|||+|+.++||+|.+.. .+++|+. .+.+..   ++||+++|+.+.|+++|+|.|+
T Consensus        79 ~G~Qlla~~~GG~v~~~~-~~e~G~~-~v~~~~---~~l~~~~~~~~~v~~~H~~~v~  131 (503)
T 2ywb_A           79 YGMQLLAQELGGRVERAG-RAEYGKA-LLTRHE---GPLFRGLEGEVQVWMSHQDAVT  131 (503)
T ss_dssp             HHHHHHHHTTTCEEECC----CEEEE-ECSEEC---SGGGTTCCSCCEEEEECSCEEE
T ss_pred             HHHHHHHHHhCCeEeeCC-CCccceE-EEEecC---cHHhhcCCCccEEEEECCCccc
Confidence            999999999999999987 5789986 455442   7899999999999999999983

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.93  E-value=1.8e-25  Score=174.75  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=106.1

Q ss_pred             CeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCC-HHHHhccCCCEEEeCCCCCCCCCC---------hhHHHHHHH
Q 031223           25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDS---------GISLQTVLE   93 (163)
Q Consensus        25 ~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~~~~~dgvvl~GG~~~~~d~---------~~~~~~i~~   93 (163)
                      |||++|++... ....+.+++++.|+++++++.+... +.+ ...++|+|||+|||+++.+.         ....++|++
T Consensus         1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~-~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~   79 (236)
T 3l7n_A            1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK-DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQK   79 (236)
T ss_dssp             CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS-CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC-CccccCEEEECCCCCCcccccccCcccchHHHHHHHHH
Confidence            58999988544 3668999999999999999864211 111 12379999999999986431         115677777


Q ss_pred             -hCCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCceEEeeeeeceec
Q 031223           94 -LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        94 -~~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                       +++++|+||||+|||+|+.++||+|.+.+ .+++|+. ++.++. +..+++|+++|+.+.+++||++..+
T Consensus        80 ~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~-~~~~G~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~  148 (236)
T 3l7n_A           80 AAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNY-LISLTEAGKMDSYLSDFSDDLLVGHWHGDMPG  148 (236)
T ss_dssp             HHHTTCEEEEETHHHHHHHHHTTCCCEEEE-EEEEEEE-EEEECTTGGGCGGGTTSCSEEEEEEEEEEECC
T ss_pred             HHHcCCCEEEEchHHHHHHHHhCCEEecCC-CceeeeE-EEEEccCcccChHHhcCCCCcEEEEecCCccc
Confidence             47889999999999999999999999987 5789996 677764 2258999999999999999998753

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.92  E-value=6.8e-25  Score=171.98  Aligned_cols=139  Identities=14%  Similarity=0.235  Sum_probs=107.5

Q ss_pred             hcCCCCCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCC--HHHHhccCCCEEEeCCCCCCCCCCh------hHHH
Q 031223           19 KSKNNKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG------ISLQ   89 (163)
Q Consensus        19 ~~~~~~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dgvvl~GG~~~~~d~~------~~~~   89 (163)
                      +---.+.||+||++... +...+.+++++.|+++.+++++...  .+.+  .++|||||+|||.++++..      ...+
T Consensus         7 ~~~~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~   84 (239)
T 1o1y_A            7 HHHHHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQ   84 (239)
T ss_dssp             ---CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHH
T ss_pred             ccccceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHH
Confidence            33445689999988644 5778999999999999888764211  1122  3799999999998876542      2466


Q ss_pred             HHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           90 TVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        90 ~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +++++ ++++|+||||+|||+|+.++||+|.+...++++|+. ++....  +++||+++|+.+.+++||++.++
T Consensus        85 ~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~~-~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~  155 (239)
T 1o1y_A           85 LIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWY-FVEKVS--DNKFFREFPDRLRVFQWHGDTFD  155 (239)
T ss_dssp             HHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEE-EEEECC--CCGGGTTSCSEEEEEEEESEEEC
T ss_pred             HHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccccE-EEEECC--CCchHHhCCCCceeEeecCCccc
Confidence            77774 678999999999999999999999998744788985 666543  68999999999999999999874

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.92  E-value=1e-25  Score=199.42  Aligned_cols=134  Identities=18%  Similarity=0.295  Sum_probs=99.2

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh--hHHHHHHHhCCCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVP   99 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~--~~~~~i~~~~~~~P   99 (163)
                      +.+.+|+|||++++|++.+.++|+++|+++++++++ .+.+++...++|||||+|||+++++.+  .+.+.+  ++.++|
T Consensus        27 ~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~P  103 (697)
T 2vxo_A           27 HYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKP  103 (697)
T ss_dssp             --CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCC
T ss_pred             CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCC
Confidence            345689999999999999999999999999999986 456777556899999999999887532  222111  367899


Q ss_pred             EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|||+|+.++||+|.+.. ..++|+. .+.+..  +++||+++|+.+.|+++|+|.|+
T Consensus       104 vLGIC~G~QlLa~~lGG~v~~~~-~~e~G~~-~v~~~~--~~~Lf~~l~~~~~v~~~H~~~V~  162 (697)
T 2vxo_A          104 VLGICYGMQMMNKVFGGTVHKKS-VREDGVF-NISVDN--TCSLFRGLQKEEVVLLTHGDSVD  162 (697)
T ss_dssp             EEEEEHHHHHHHHHTTCCBCC--------CE-EEEECT--TSGGGTTCCSEEEECCCSSCCBS
T ss_pred             EEEECHHHHHHHHHhCCeEeecC-CCccceE-EEEecC--CChhhhcCCccCcceeeccccee
Confidence            99999999999999999999987 4689985 777754  57999999999999999999984

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.92  E-value=7.6e-25  Score=192.42  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=110.8

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh-----HHHHHHH-h
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-L   94 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~-----~~~~i~~-~   94 (163)
                      ...+++|+|||++++|++++.++|++.|+++++++++..  .+  ..++|+|||+|||+++.+...     ..++|++ +
T Consensus       443 ~~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~--~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~  518 (645)
T 3r75_A          443 ELSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VD--LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI  518 (645)
T ss_dssp             CSTTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CC--GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--cc--ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence            345689999999999999999999999999999998632  12  237999999999999987652     3566666 4


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +.++|+||||+|||+|+.++||+|.+.. .+++|+.+.+.+.   ++++|.+++.++.++++|.+.+
T Consensus       519 ~~~iPiLGIClG~QlLa~alGG~V~~~~-~~~~G~~~~i~~~---~~~l~~~~~~~~~v~~~h~~~~  581 (645)
T 3r75_A          519 DEGKPFMAVCLSHQILNAILGIPLVRRE-VPNQGIQVEIDLF---GQRERVGFYNTYVAQTVRDEMD  581 (645)
T ss_dssp             HHTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEET---TEEEEEEEEEEEEEBCSCSEEE
T ss_pred             HCCCCEEEECHHHHHHHHHhCCEEEcCC-CcccccceEEeee---cCcceecCCCcEEEEEehhhcc
Confidence            6789999999999999999999999987 4678998777765   4678888888899988887654

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.89  E-value=8.2e-23  Score=169.61  Aligned_cols=126  Identities=21%  Similarity=0.377  Sum_probs=99.8

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLG  102 (163)
                      ..+|++||++  ...++.++|+++|+++++++++ .+.+++...++|||||+|||+++.+.....++++++ ++++|+||
T Consensus       190 ~~~V~viD~G--~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG  266 (379)
T 1a9x_B          190 PFHVVAYDFG--AKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG  266 (379)
T ss_dssp             CEEEEEEESS--CCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred             CCEEEEEECC--ChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence            3689999994  4578999999999999999986 456677656899999999999998766677888885 67899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||+|||+|+.++||++.+++. .++|+.+++....  ..       .-+.+.++|+++|+
T Consensus       267 IClG~QLLa~A~GG~v~k~~~-gh~g~n~pv~~~~--~g-------~v~its~~H~~aV~  316 (379)
T 1a9x_B          267 ICLGHQLLALASGAKTVKMKF-GHHGGNHPVKDVE--KN-------VVMITAQNHGFAVD  316 (379)
T ss_dssp             ETHHHHHHHHHTTCCEEEEEE-EEEEEEEEEEETT--TT-------EEEEEEEEEEEEEC
T ss_pred             ECchHHHHHHHhCcEEEeccc-ccccCceeeEecC--CC-------cEEEEecCccceEe
Confidence            999999999999999999874 3567777765321  11       12345678888774

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.89  E-value=9.8e-24  Score=161.70  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=90.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhH---HHHHHH-hCCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS---LQTVLE-LGPTV   98 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~---~~~i~~-~~~~~   98 (163)
                      |+.+|+|||++.++.+++.++|+++|+++++++    +.+++.  ++|+|||+|| +++.+....   ..+++. .+.++
T Consensus         1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~----~~~~l~--~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~   73 (211)
T 4gud_A            1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISR----DPQVVL--AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEK   73 (211)
T ss_dssp             --CCEEEECCCCTTHHHHHHHHHHTTCCEEEEC----CHHHHH--HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHCCCEEEEEC----CHHHHh--CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCC
Confidence            345799999999999999999999999999875    256665  6899999654 554433211   112333 25789


Q ss_pred             CEEEEehHHHHHHHHhCCeeeeCCCc---------------------ccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223           99 PLFGVCMGLQCIGEAFGGKIVRSPLG---------------------VMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN  157 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~Gg~v~~~~~~---------------------~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H  157 (163)
                      |+||||+|||+|+.++|+.+.+....                     ++.++. .+...  ..+++|+++++.+.++++|
T Consensus        74 PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~~~~l~~~l~~~~~~~~~H  150 (211)
T 4gud_A           74 PLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWN-TVQVK--EGHPLFNGIEPDAYFYFVH  150 (211)
T ss_dssp             CEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEE-CCEEC--TTCGGGTTCCTTCCEEEEE
T ss_pred             CEEEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccce-eeeee--ccChhhcCCCCCcEEEEEe
Confidence            99999999999999999887765311                     111222 11222  2678999999999999999


Q ss_pred             eceec
Q 031223          158 IQCFA  162 (163)
Q Consensus       158 ~~~v~  162 (163)
                      ++.++
T Consensus       151 ~~~v~  155 (211)
T 4gud_A          151 SFAMP  155 (211)
T ss_dssp             SEECC
T ss_pred             eEEeC
Confidence            99874

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.87  E-value=1e-21  Score=155.14  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=89.9

Q ss_pred             HHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCC-CC--CCC--------------hhHHHHHHHh-CCC
Q 031223           38 YNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPG-AP--QDS--------------GISLQTVLEL-GPT   97 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~-~~--~d~--------------~~~~~~i~~~-~~~   97 (163)
                      ..+.++++++|..+.++++.. +.+ +.  ..++|||||+||++ +|  +..              ....++++++ +++
T Consensus        31 ~~~~~~l~~aG~~pv~lp~~~-~~~-~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~  108 (254)
T 3fij_A           31 QRYVDAIQKVGGFPIALPIDD-PST-AVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG  108 (254)
T ss_dssp             HHHHHHHHHHTCEEEEECCCC-GGG-HHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCEEEEEeCCC-chH-HHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence            458889999999999998752 222 22  13799999999986 22  111              0145667774 788


Q ss_pred             CCEEEEehHHHHHHHHhCCeeeeCC-------------CcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223           98 VPLFGVCMGLQCIGEAFGGKIVRSP-------------LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a~Gg~v~~~~-------------~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +|+||||+|||+|+.++||++.+..             ..++.|+. .+++++  +++||+.+++.+.|+++|++.|+
T Consensus       109 ~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~-~v~~~~--~s~l~~~~~~~~~v~~~H~~~v~  183 (254)
T 3fij_A          109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSH-TIDIEP--TSELAKHHPNKKLVNSLHHQFIK  183 (254)
T ss_dssp             CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCE-EEEECT--TSSGGGTCCTTEEECCBCSCEES
T ss_pred             CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceE-EEEeCC--CChHHHhcCCcEEEEEeccchhh
Confidence            9999999999999999999998751             12345774 677764  67899999989999999999874

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.84  E-value=2.2e-21  Score=147.76  Aligned_cols=124  Identities=15%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP   96 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~   96 (163)
                      +++|+|||++.++..++.++|++.|+++++++++    +++.  ++|+|||+|| +++.+.      ....+++++ +++
T Consensus         2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~   74 (200)
T 1ka9_H            2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLER   74 (200)
T ss_dssp             -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred             ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHc
Confidence            4689999987677788999999999999988743    2333  7999999663 443211      224677777 468


Q ss_pred             CCCEEEEehHHHHHHHH---hC---------CeeeeCC--CcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           97 TVPLFGVCMGLQCIGEA---FG---------GKIVRSP--LGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a---~G---------g~v~~~~--~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      ++|+||||+|||+|+.+   +|         |++.+.+  ..++.||. .+..++    + |.++++ +.++++|++.+
T Consensus        75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~-~v~~~~----~-l~~~~~-~~~~~~Hs~~~  146 (200)
T 1ka9_H           75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWN-ALEFGG----A-FAPLTG-RHFYFANSYYG  146 (200)
T ss_dssp             TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEEE-ECEECG----G-GGGGTT-CEEEEEESEEC
T ss_pred             CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeEE-EEEech----h-hhcCCC-CCEEEeccccc
Confidence            89999999999999999   68         7887764  23567886 566552    4 778887 89999999976

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.83  E-value=4.2e-21  Score=144.43  Aligned_cols=123  Identities=15%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh----hHHHHHHHhCCCCCE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLELGPTVPL  100 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~----~~~~~i~~~~~~~Pv  100 (163)
                      |+|+|||+.+++... .++|++.|+++.+++++    +++.  ++|||||+||++++.+..    .+.+.++  ++++|+
T Consensus         1 m~i~vl~~~g~~~~~-~~~l~~~G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi   71 (186)
T 2ywj_A            1 MIIGVLAIQGDVEEH-EEAIKKAGYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI   71 (186)
T ss_dssp             CEEEEECSSSCCHHH-HHHHHHTTSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred             CEEEEEecCcchHHH-HHHHHHCCCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence            589999998777654 59999999999888642    3443  799999999987654321    1234444  678999


Q ss_pred             EEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-C------CcCccccCCCCceEEeeeeeceec
Q 031223          101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-K------GEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       101 LGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~------~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||||+|||+|+.++||++...  +...+.   +.... +      ..+.+|.++ +++.++++|+++|+
T Consensus        72 lGIC~G~Qll~~~~gg~~~~l--g~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~  134 (186)
T 2ywj_A           72 LGTCAGMVLLSKGTGINQILL--ELMDIT---VKRNAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVD  134 (186)
T ss_dssp             EEETHHHHHHSSCCSSCCCCC--CCSSEE---EETTTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEE
T ss_pred             EEECHHHHHHHHHhCCCcCcc--CCCcee---EEeccCCCcccceecccccccC-CcEEEEEEecceee
Confidence            999999999999999985322  111111   11110 0      023567777 78999999999873

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.82  E-value=2.6e-20  Score=142.38  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=96.8

Q ss_pred             CCeEEEEECCCChH-HHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC--------ChhHHHHHHHh
Q 031223           24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLEL   94 (163)
Q Consensus        24 ~~~Ilvid~~~~~~-~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d--------~~~~~~~i~~~   94 (163)
                      .++|+||++.+.+. ..+.++|++.|+++.++++++    ++  .++|+|||+||+....+        ...+.++++++
T Consensus         2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~   75 (213)
T 3d54_D            2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA   75 (213)
T ss_dssp             CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred             CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence            46899999987764 788999999999999987541    22  37999999999653332        12356778774


Q ss_pred             -CCCCCEEEEehHHHHHHHH--hCCeeeeCCCc-ccccceeEEEeCCCCcCccccCCCC--ceEEeeeee
Q 031223           95 -GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLSK--YVSISCYNI  158 (163)
Q Consensus        95 -~~~~PvLGIC~G~QlLa~a--~Gg~v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp~--~~~v~~~H~  158 (163)
                       ++++|+||||+|+|+|+.+  +||++.+.+.. .+.||. .+++.. .+++||+++++  .+.++++|+
T Consensus        76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~-~v~~~~-~~~~l~~~~~~~~~~~~~~~H~  143 (213)
T 3d54_D           76 AERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWV-DLIVEN-NDTPFTNAFEKGEKIRIPIAHG  143 (213)
T ss_dssp             HHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEE-EEEECC-CSSTTSTTSCTTCEEEEECCBS
T ss_pred             HHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeE-EEEeCC-CCCceeeccCCCCEEEEEeecC
Confidence             6789999999999999999  99999887522 356775 677652 26899999985  577777993

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.80  E-value=1.7e-19  Score=146.51  Aligned_cols=140  Identities=13%  Similarity=0.202  Sum_probs=94.3

Q ss_pred             CCCCCeEEEEECCCC-----------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCCh--
Q 031223           21 KNNKNPIIVIDNYDS-----------FTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG--   85 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~-----------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~--   85 (163)
                      ++.++.|.|......           ...++.++|+++|+.+++++++. +.+++..  .++|||||+||++++.+..  
T Consensus        27 ~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~  105 (315)
T 1l9x_A           27 TAKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYA  105 (315)
T ss_dssp             -CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHH
T ss_pred             cCCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhh
Confidence            344467888843211           12357899999999999998763 4444432  2799999999998876541  


Q ss_pred             ----hHHHHHHHh-CC--CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCCce------
Q 031223           86 ----ISLQTVLEL-GP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSKYV------  151 (163)
Q Consensus        86 ----~~~~~i~~~-~~--~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~~~------  151 (163)
                          .+.+.+++. ++  ++|+||||+|||+|+.++||++.... ..++|...++.... ..+++||+++|+.+      
T Consensus       106 ~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~-~~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~  184 (315)
T 1l9x_A          106 KVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAV  184 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccccc-ccccCCCCCeeeccCCCCChHHHhcChhhhhhccc
Confidence                234444443 22  59999999999999999999976554 23456544444432 23688999997542      


Q ss_pred             --EEeeeeeceec
Q 031223          152 --SISCYNIQCFA  162 (163)
Q Consensus       152 --~v~~~H~~~v~  162 (163)
                        .++++|+|+|+
T Consensus       185 ~~~~~~~H~~~V~  197 (315)
T 1l9x_A          185 EPLTANFHKWSLS  197 (315)
T ss_dssp             SCCEEEEEEEECB
T ss_pred             cceEEEhhhhhcC
Confidence              24459999984

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.80  E-value=2.6e-20  Score=149.69  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             hhHhhHHhhhcCCCCCeEEEE-EC-CCCh-HHHHHHHHHHcCC----EEEEEeCCCC---------CHHHH-----hccC
Q 031223           10 SKSLYLDDKKSKNNKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDEL---------TVEEL-----KRKN   68 (163)
Q Consensus        10 ~~~~~~~~~~~~~~~~~Ilvi-d~-~~~~-~~~~~~~l~~~G~----~~~v~~~~~~---------~~~~~-----~~~~   68 (163)
                      -|+.++++.++++..++|+|| |+ +.+. ..++.++|+++|+    .+++...+..         +.+++     ...+
T Consensus        11 ~~~~~~~~~~~~~~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   90 (289)
T 2v4u_A           11 VDLGTENLYFQSMKICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCK   90 (289)
T ss_dssp             ------------CEEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCCceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhh
Confidence            599999999999888999999 77 5555 5688999998765    3444433211         11110     0126


Q ss_pred             CCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeee
Q 031223           69 PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIV  119 (163)
Q Consensus        69 ~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (163)
                      +|||||+||++++.. ....++++++ ++++|+||||+|||+|+.++||++.
T Consensus        91 ~dgiil~GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~  141 (289)
T 2v4u_A           91 ADGILVPGGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL  141 (289)
T ss_dssp             CSEEEECSCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred             CCEEEecCCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence            999999999877433 3356677774 6789999999999999999999985

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.79  E-value=5.8e-20  Score=139.24  Aligned_cols=124  Identities=17%  Similarity=0.208  Sum_probs=86.4

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~~~P   99 (163)
                      +||+|||+.++|...+ ++|++.|+++.++++    .+++.  ++|+|||+||+.++.+.    ..+.++++++ ++++|
T Consensus         2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p   74 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP   74 (196)
T ss_dssp             CEEEEECSSSCCHHHH-HHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence            6899999987787765 899999999888864    23443  79999999998654432    1235677774 68899


Q ss_pred             EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeC--C-CC------cCccccCCCCceEEeeeeecee
Q 031223          100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD--E-KG------EDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~--~-~~------~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +||||+|+|+|+.++||++.+.     .|+. ++.++  . +.      .+.++.+++++|.++++|++.|
T Consensus        75 ilgIC~G~q~l~~~~gg~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v  139 (196)
T 2nv0_A           75 MFGTCAGLIILAKEIAGSDNPH-----LGLL-NVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHI  139 (196)
T ss_dssp             EEEETHHHHHHSBCCC----CC-----CCCS-CEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEE
T ss_pred             EEEECHHHHHHHHHhcCCCCCc-----ccCC-ceeEeccCCCcccccccCCcccccCCCceEEEEEeccee
Confidence            9999999999999999986432     2332 11111  0 00      1345667778899999999876

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.77  E-value=1.7e-19  Score=137.18  Aligned_cols=128  Identities=13%  Similarity=0.048  Sum_probs=84.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcC-----CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-h-----hHHHHHHH
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-G-----ISLQTVLE   93 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G-----~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~-----~~~~~i~~   93 (163)
                      |||+|||++.++..++.++|++.|     +++++++++    ++   .++|+|||+|| +++.+. .     .+.+++++
T Consensus         1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~----~~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~   72 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESP----RN---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK   72 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSC----CS---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred             CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCC----cc---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence            589999988777789999999999     899988753    12   37999999664 444322 1     13567777


Q ss_pred             h-CCCCCEEEEehHHHHHHHHhC--CeeeeCCCcccccceeEEE---eCCCCcCccccCCC-CceEEeeeeeceec
Q 031223           94 L-GPTVPLFGVCMGLQCIGEAFG--GKIVRSPLGVMHGKSSLVY---YDEKGEDGLLAGLS-KYVSISCYNIQCFA  162 (163)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~a~G--g~v~~~~~~~e~G~~~~i~---~~~~~~~~lf~~lp-~~~~v~~~H~~~v~  162 (163)
                      + ++++|+||||+|||+|+.++|  |+ .+.- +...|......   ......++++...+ +.+.++++|+++|+
T Consensus        73 ~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~  146 (201)
T 1gpw_B           73 HVEDERYVVGVCLGMQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAV  146 (201)
T ss_dssp             HHHTTCEEEEETHHHHTTSSEETTEEE-EECC-CSSSEEEEECCCSSCSEEEEEEEEESSSSCCEEEEEEESEEEE
T ss_pred             HHHcCCeEEEEChhHHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCCCCcccceeeEeccCCCCCeEEEECcceec
Confidence            4 678999999999999999997  33 2211 11111111000   00000134444444 57899999999984

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.75  E-value=2.4e-19  Score=138.48  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=88.2

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-CC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-GP   96 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~~   96 (163)
                      +.+++|+|+++.+.|.. +.++|++.|+++.++++.    +++.  ++|+|||+||+.++.+.    ..+.++|+++ ++
T Consensus        21 ~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~   93 (219)
T 1q7r_A           21 QSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA   93 (219)
T ss_dssp             CCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHc
Confidence            44688999998765664 458899999999888742    3443  79999999998654321    1235677774 68


Q ss_pred             CCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC---CC------cCccccCCCCceEEeeeeecee
Q 031223           97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        97 ~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~---~~------~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      ++|+||||+|+|+|+.++||++.+.     .|+. ++.+..   +.      .+..|.+++++|.++++|++.|
T Consensus        94 ~~PilGIC~G~QlL~~~~gg~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v  161 (219)
T 1q7r_A           94 GKPMFGTCAGLILLAKRIVGYDEPH-----LGLM-DITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHI  161 (219)
T ss_dssp             TCCEEEETTHHHHHEEEEESSCCCC-----CCCE-EEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEE
T ss_pred             CCeEEEECHHHHHHHHHhCCCCcCC-----cCcc-ceEEEecCCCccccceecCcccCCCCCceEEEEEeccee
Confidence            8999999999999999999987432     2321 111110   00      1233466667889999999876

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.73  E-value=1.8e-18  Score=132.49  Aligned_cols=130  Identities=11%  Similarity=0.107  Sum_probs=83.3

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-   94 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-   94 (163)
                      +....++|+|||+ ..+...+.++|++.|+++.++++.    +++.  ++|+|||+||+.+..+.    ..+.++|+++ 
T Consensus        16 ~~~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~   88 (208)
T 2iss_D           16 PRGSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERI   88 (208)
T ss_dssp             ----CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHH
Confidence            3445578999997 344555778899999999888642    3454  79999999985433221    1135677774 


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCC---C------cCccccCCC-CceEEeeeeeceec
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK---G------EDGLLAGLS-KYVSISCYNIQCFA  162 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~---~------~~~lf~~lp-~~~~v~~~H~~~v~  162 (163)
                      ++++|+||||+|+|+|+.++||...+.     .|+. +.++...   .      .+..+.+++ ++|.++++|++.|+
T Consensus        89 ~~g~PilGIC~G~QlL~~~~gg~~~~~-----lg~~-~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  160 (208)
T 2iss_D           89 NNGLPVFATCAGVILLAKRIKNYSQEK-----LGVL-DITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIV  160 (208)
T ss_dssp             HTTCCEEEETHHHHHHEEEEC---CCC-----CCCE-EEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEE
T ss_pred             HCCCeEEEECHHHHHHHHHcCCCCCCC-----cccc-ceEEEecCCCcccccccCCcccccCCCCceEEEEEeCcccc
Confidence            688999999999999999999954221     2332 1111110   0      123456665 57999999998763

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.73  E-value=2.1e-18  Score=137.49  Aligned_cols=132  Identities=17%  Similarity=0.112  Sum_probs=85.1

Q ss_pred             CeEEEE-EC-------CCChHHHHHHHHHHcCCEEEEEeCCCCC--------H-HHHhccCCCEEEeCCCCCCCCCChhH
Q 031223           25 NPIIVI-DN-------YDSFTYNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS   87 (163)
Q Consensus        25 ~~Ilvi-d~-------~~~~~~~~~~~l~~~G~~~~v~~~~~~~--------~-~~~~~~~~dgvvl~GG~~~~~d~~~~   87 (163)
                      .+|+|| |.       ++|+..++.++..+.+..+.+++.+...        . +.+  .++|||||+||++++... ..
T Consensus         9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~--~~~dgiil~GG~~~~~~~-~~   85 (273)
T 2w7t_A            9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKAL--LGCDGIFVPGGFGNRGVD-GK   85 (273)
T ss_dssp             EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHH--HTCSEEEECCCCTTTTHH-HH
T ss_pred             CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHH--hhCCEEEecCCCCCcCch-hH
Confidence            678888 54       2334555666666777778887665321        1 122  279999999998764433 24


Q ss_pred             HHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeC---C---Cc-----c----------------cccceeEEEeCCCC
Q 031223           88 LQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRS---P---LG-----V----------------MHGKSSLVYYDEKG  139 (163)
Q Consensus        88 ~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~---~---~~-----~----------------e~G~~~~i~~~~~~  139 (163)
                      .++++++ ++++|+||||+|||+|+.++||+|...   .   .+     +                +.||. ++.+.. .
T Consensus        86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~-~v~~~~-~  163 (273)
T 2w7t_A           86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGAC-DVYIVE-K  163 (273)
T ss_dssp             HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEE-EEEECC-T
T ss_pred             HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccce-EEEEec-C
Confidence            5666664 578999999999999999999998421   0   00     0                23443 555532 1


Q ss_pred             cCccccCCCCceEEee--eeecee
Q 031223          140 EDGLLAGLSKYVSISC--YNIQCF  161 (163)
Q Consensus       140 ~~~lf~~lp~~~~v~~--~H~~~v  161 (163)
                      ++++++.+++.+.+++  +|++.|
T Consensus       164 ~s~l~~~~~~~~~v~~~H~Hsy~v  187 (273)
T 2w7t_A          164 SSIMAKIYSKSNIVVERHRHRYEV  187 (273)
T ss_dssp             TSHHHHHTTTCSEEEEEEEECCEE
T ss_pred             CcHHHHHhCCCceEEeeccccccc
Confidence            4677777776666666  556665

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.72  E-value=1.2e-18  Score=151.08  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=93.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHHh-CCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLEL-GPT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~~-~~~   97 (163)
                      ++|+|||++.++..++.++|+++|+++.+++..    ++....++|+|||+|| +++...      ....++++++ +++
T Consensus         5 ~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~----~~~~l~~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g   79 (555)
T 1jvn_A            5 PVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSP----KDFNISGTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESG   79 (555)
T ss_dssp             CEEEEECCSCSCCHHHHHHHHHTTCEEEEESSG----GGCCSTTCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCc----cccccccCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcC
Confidence            579999987778889999999999999988743    2201137999999774 332211      1135667764 678


Q ss_pred             CCEEEEehHHHHHHHHh------------CCeeeeCCC----cccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223           98 VPLFGVCMGLQCIGEAF------------GGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a~------------Gg~v~~~~~----~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +|+||||+|||+|+.++            ||+|.+.+.    .+++||. .+...    ++||+++++.+.++++|++.+
T Consensus        80 ~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~-~v~~~----~~L~~~l~~~~~~~~vHS~~~  154 (555)
T 1jvn_A           80 KPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWN-SCIPS----ENLFFGLDPYKRYYFVHSFAA  154 (555)
T ss_dssp             CCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEE-CCCCC----TTCCTTCCTTSCEEEEESEEC
T ss_pred             CcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCccccce-EEEEc----CHHHhhCCCCceEEEEEEEEE
Confidence            99999999999999998            788887541    2456885 44432    789999988778888888776

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.72  E-value=8.3e-18  Score=143.67  Aligned_cols=112  Identities=17%  Similarity=0.315  Sum_probs=84.3

Q ss_pred             cCCChhhHhhHHhhh--cCCCCCeEEEE-------ECCCChHHHHHHHHHHcCCEEEEEeCCCCCH--------HHHhcc
Q 031223            5 EAVPISKSLYLDDKK--SKNNKNPIIVI-------DNYDSFTYNLCQYMGELGYHFEVYRNDELTV--------EELKRK   67 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~--~~~~~~~Ilvi-------d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~--------~~~~~~   67 (163)
                      +.+++.|+.++++.+  ++....+|+++       |+|.|+..++.++..+.+..+.+...+...+        +.+  .
T Consensus       272 ~~~~~~w~~~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L--~  349 (535)
T 3nva_A          272 QVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEIL--G  349 (535)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTT--T
T ss_pred             CCCHHHHHHHHHHhhccCCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhc--c
Confidence            467899999999999  77778899999       4444455566666667788888765442111        122  3


Q ss_pred             CCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeee
Q 031223           68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIV  119 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (163)
                      ++||||++||++++... ...++++++ ++++|+||||+|||+|+.++||+|.
T Consensus       350 ~~DgIIlpGG~G~~~~~-g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~  401 (535)
T 3nva_A          350 NVNGIIVLPGFGSRGAE-GKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL  401 (535)
T ss_dssp             SCSEEEECCCCSSTTHH-HHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCCCCCccHH-HHHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence            79999999998775433 235666664 6789999999999999999999984

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.69  E-value=1.1e-16  Score=129.55  Aligned_cols=132  Identities=13%  Similarity=0.097  Sum_probs=89.5

Q ss_pred             CCeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCC-C--------------CHHHHhccCCCEEEeCCCCCCCCC
Q 031223           24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQD   83 (163)
Q Consensus        24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~~d   83 (163)
                      .+||+|++.-..   +...+.+.|.....++++  +.... .              ++++++..+|||+||+|||.+..+
T Consensus        47 plkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~  126 (312)
T 2h2w_A           47 PLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLP  126 (312)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSC
T ss_pred             CceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCC
Confidence            379999987544   344577777665554444  43321 1              234443457999999999976543


Q ss_pred             Ch------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEee
Q 031223           84 SG------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISC  155 (163)
Q Consensus        84 ~~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~  155 (163)
                      .+      ++.++++.. ++++|+||||+|+|+++.++|| .....+ +.+.|+. +.++++  .++||+++++.|.+.+
T Consensus       127 ~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~-~~~~~~--~~pL~~g~~~~f~vph  202 (312)
T 2h2w_A          127 FEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELP-QKLSGVY-KHRVAK--DSVLFRGHDDFFWAPH  202 (312)
T ss_dssp             GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEE-EEEESS--CCGGGTTCCSEEEEEE
T ss_pred             CccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCC-CCEEEEE-EEEEcC--CCccccCCCCceEeeE
Confidence            22      234555543 5789999999999997777766 333333 4578886 556665  6899999999999999


Q ss_pred             eeec
Q 031223          156 YNIQ  159 (163)
Q Consensus       156 ~H~~  159 (163)
                      +|..
T Consensus       203 sr~~  206 (312)
T 2h2w_A          203 SRYT  206 (312)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8553

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.68  E-value=1.7e-16  Score=128.12  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=87.8

Q ss_pred             CeEEEEECCCC---hHHHHHHHHHHcCCEEEE--EeCCC-C--------------CHHHHhccCCCEEEeCCCCCCCCCC
Q 031223           25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v--~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~~d~   84 (163)
                      +||+|++.-..   +...+.+.|.....++++  +.... .              ++++++..+|||+||+|||.+..+.
T Consensus        36 lkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~  115 (301)
T 2vdj_A           36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF  115 (301)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCG
T ss_pred             ceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCc
Confidence            68999987544   344566766655544444  43321 1              2445544689999999999765432


Q ss_pred             h------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeee
Q 031223           85 G------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCY  156 (163)
Q Consensus        85 ~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~  156 (163)
                      +      ++.++++.. ++++|+||||+|+|+++.++|| .....+ ..+.|+. +.+++. ..++||+++++.|.+.+|
T Consensus       116 ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~-~~~~~~-~~~pL~~g~~~~f~~phs  192 (301)
T 2vdj_A          116 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFGVF-EHEVRE-QHVKLLQGFDELFFAVHS  192 (301)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEE-EEEECC-SSCGGGTTCCSEEEEEEE
T ss_pred             ccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEEEE-EEEecC-CCCccccCCCCceEeeeE
Confidence            2      234555553 5789999999999997776666 333333 3467886 455554 368999999999999998


Q ss_pred             ee
Q 031223          157 NI  158 (163)
Q Consensus       157 H~  158 (163)
                      |.
T Consensus       193 r~  194 (301)
T 2vdj_A          193 RH  194 (301)
T ss_dssp             EE
T ss_pred             ec
Confidence            55

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.68  E-value=3.4e-17  Score=141.26  Aligned_cols=116  Identities=20%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             cCCChhhHhhHHhhhcCCCCCeEE-------EEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-----HHHHhccCCCEE
Q 031223            5 EAVPISKSLYLDDKKSKNNKNPII-------VIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGV   72 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Il-------vid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-----~~~~~~~~~dgv   72 (163)
                      ..++..|..++++++++....+|.       ++|++.|+..++.+++.+.|+.+.+.+.+...     .++.. .++|||
T Consensus       281 ~~~l~~w~~~~~~~~~~~~~v~I~ivgkyv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGI  359 (550)
T 1vco_A          281 IPNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGI  359 (550)
T ss_dssp             CCCCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCE
T ss_pred             hHHHHHhHHHHHhhcCCCCceEEcccCCeEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEE
Confidence            357889999999988776654444       56888888888888888899999888654211     22221 379999


Q ss_pred             EeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223           73 LISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSP  122 (163)
Q Consensus        73 vl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (163)
                      ||+||++++...+ ..++++++ ++++|+||||+|||+|+.++||++.+++
T Consensus       360 ILpGGfGd~~~~g-~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~  409 (550)
T 1vco_A          360 LVPGGFGVRGIEG-KVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLK  409 (550)
T ss_dssp             EECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCT
T ss_pred             EECCCCCCcchhh-hHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCC
Confidence            9999998875533 34666664 5789999999999999999999887643

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.67  E-value=1.5e-17  Score=125.18  Aligned_cols=124  Identities=16%  Similarity=0.162  Sum_probs=82.4

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC-CC---ChhHHHHHHHh-CCC-
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QD---SGISLQTVLEL-GPT-   97 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~-~d---~~~~~~~i~~~-~~~-   97 (163)
                      +++|.|+...+ ....+.++|++.|+++.++++.    +++.  ++|+|||+||+... .+   ...+.++++++ +++ 
T Consensus         2 ~p~Igi~~~~~-~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~   74 (191)
T 2ywd_A            2 RGVVGVLALQG-DFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS   74 (191)
T ss_dssp             -CCEEEECSSS-CHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred             CcEEEEEecCC-chHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence            46799997653 4457899999999999888743    3443  69999999995321 11   11245677774 678 


Q ss_pred             CCEEEEehHHHHHHHHhCC-eeeeCCCcccccceeEEEeC--C-CC------cCccccCCCCceEEeeeeecee
Q 031223           98 VPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYD--E-KG------EDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a~Gg-~v~~~~~~~e~G~~~~i~~~--~-~~------~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +|+||||+|||+|+.++|| ++.+.     .|+. +....  . +.      .+..+.++ +++.++++|++.+
T Consensus        75 ~PilGiC~G~Q~l~~~~gg~~~~~~-----lg~~-~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v  141 (191)
T 2ywd_A           75 LALFGTCAGAIWLAKEIVGYPEQPR-----LGVL-EAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVF  141 (191)
T ss_dssp             CEEEEETHHHHHHEEEETTCTTCCC-----CCCE-EEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEE
T ss_pred             CeEEEECHHHHHHHHHhCCCCCCcc-----cccc-ceEEEcCCcCCccccccccccccCC-CceeEEEEcccce
Confidence            9999999999999999998 54322     2221 11111  0 00      12334555 6788999999876

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.67  E-value=5.5e-17  Score=139.83  Aligned_cols=114  Identities=16%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             cCCChhhHhhHHhhhcCCCCCeEEEE-------ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCE
Q 031223            5 EAVPISKSLYLDDKKSKNNKNPIIVI-------DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRG   71 (163)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~Ilvi-------d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dg   71 (163)
                      +.++..|++++++++++....+|.++       |++.++...+.++..+.|..+++.+.+   .+++.      ..++||
T Consensus       270 ~~~l~~w~~lv~~v~~~~~~v~i~~vGkyv~l~D~y~Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DG  346 (545)
T 1s1m_A          270 EANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDA  346 (545)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEEEEEESSCSSGGGGHHHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSE
T ss_pred             hHHHHHHHHHHHhccCCCCeEEeCCcCCeEEEEEHHHHHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCE
Confidence            46788999999999988877777766       433333434444333344566766654   22221      237999


Q ss_pred             EEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCC
Q 031223           72 VLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSP  122 (163)
Q Consensus        72 vvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~  122 (163)
                      |||+|||+++... ...++++++ ++++|+||||+|||+|+.++||++.+++
T Consensus       347 IilsGGpg~~~~~-g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~  397 (545)
T 1s1m_A          347 ILVPGGFGYRGVE-GMITTARFARENNIPYLGICLGMQVALIDYARHVANME  397 (545)
T ss_dssp             EEECCCCSSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCT
T ss_pred             EEECCCCCCccch-hhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCC
Confidence            9999999887543 234666664 5789999999999999999999998653

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.61  E-value=6.7e-16  Score=119.43  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=85.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC---C---hhHHHHHHH
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---S---GISLQTVLE   93 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~---G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d---~---~~~~~~i~~   93 (163)
                      .+++|.|++..+.+. ...++|+++   |+++.+++.    .+++.  ++|+|||+||+.+..+   .   ..+.++|++
T Consensus         2 ~~~~I~Il~~~~~~~-~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~   74 (227)
T 2abw_A            2 SEITIGVLSLQGDFE-PHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVH   74 (227)
T ss_dssp             CCEEEEEECTTSCCH-HHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcH-HHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHH
Confidence            347899998765554 568889888   988877753    34554  6999999999754321   1   234667777


Q ss_pred             h-CC-CCCEEEEehHHHHHHHHhCCeeeeCC--CcccccceeEEEeCCCC---------cCccccCC----CCceEEeee
Q 031223           94 L-GP-TVPLFGVCMGLQCIGEAFGGKIVRSP--LGVMHGKSSLVYYDEKG---------EDGLLAGL----SKYVSISCY  156 (163)
Q Consensus        94 ~-~~-~~PvLGIC~G~QlLa~a~Gg~v~~~~--~~~e~G~~~~i~~~~~~---------~~~lf~~l----p~~~~v~~~  156 (163)
                      + ++ ++|+||||+|||+|+.++||++....  ..++.|+. ++++....         .+..+.++    ++.|.++..
T Consensus        75 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~  153 (227)
T 2abw_A           75 FIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL-DITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACI  153 (227)
T ss_dssp             HHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE-EEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEE
T ss_pred             HHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCce-eEEEEecCCCccccccccccccccccccCCCceeEEEE
Confidence            4 67 89999999999999999999864321  01345654 33322100         01123333    356777888


Q ss_pred             eecee
Q 031223          157 NIQCF  161 (163)
Q Consensus       157 H~~~v  161 (163)
                      |++.|
T Consensus       154 h~~~v  158 (227)
T 2abw_A          154 RAPYI  158 (227)
T ss_dssp             SCCEE
T ss_pred             EcceE
Confidence            87665

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.16  E-value=1.9e-10  Score=107.36  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=85.7

Q ss_pred             CCCeEEEEECCCCh-HHHHHHHHHHcCCEEEEEeCCC--CCHHHHhccCCCEEEeCCCCCCCCCC---h-----------
Q 031223           23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS---G-----------   85 (163)
Q Consensus        23 ~~~~Ilvid~~~~~-~~~~~~~l~~~G~~~~v~~~~~--~~~~~~~~~~~dgvvl~GG~~~~~d~---~-----------   85 (163)
                      .++||+||++.+++ ...+.++|+..|+++++++..+  ....++  .++|+||++||.. ..|.   +           
T Consensus      1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l--~~~d~lvlPGGfS-ygD~l~~g~~~a~~~l~~~ 1122 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGL--GNFHALVACGGFS-YGDVLGAGEGWAKSILFNH 1122 (1303)
T ss_dssp             CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCG--GGCSEEEECCSCG-GGGTTSTTHHHHHHHHTSH
T ss_pred             CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccH--hhCCEEEECCCCc-chhhhccchhHHHHHHhch
Confidence            46799999997775 5789999999999998875310  001223  2799999999943 2221   1           


Q ss_pred             hHHHHHHH-h-CCCCCEEEEehHHHHHHHH---hCCe-----eeeCCCcc-cccceeEEEeCCCCcCccccCCC-CceEE
Q 031223           86 ISLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLGV-MHGKSSLVYYDEKGEDGLLAGLS-KYVSI  153 (163)
Q Consensus        86 ~~~~~i~~-~-~~~~PvLGIC~G~QlLa~a---~Gg~-----v~~~~~~~-e~G~~~~i~~~~~~~~~lf~~lp-~~~~v  153 (163)
                      .+.+.+++ + ++++|+||||+|||+|+.+   +-|.     +.+...+. +--|. .+++.. .++++|+++. +.+.+
T Consensus      1123 ~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~-~~~v~~-~~s~~~~~~~g~~~~i 1200 (1303)
T 3ugj_A         1123 RVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFS-LVEVTQ-SPSLLLQGMVGSQMPI 1200 (1303)
T ss_dssp             HHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEE-EEEECC-CSCGGGTTCTTCEEEE
T ss_pred             hHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCe-EEEECC-CCChhhhccCCCEEee
Confidence            13445665 3 6789999999999999986   2233     44443221 22232 455543 2578888874 35666


Q ss_pred             eeeeec
Q 031223          154 SCYNIQ  159 (163)
Q Consensus       154 ~~~H~~  159 (163)
                      +-.|++
T Consensus      1201 ~vaHgE 1206 (1303)
T 3ugj_A         1201 AVSHGE 1206 (1303)
T ss_dssp             EEEESS
T ss_pred             eeEeCC
Confidence            677764

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.95  E-value=2.8e-10  Score=88.31  Aligned_cols=89  Identities=9%  Similarity=0.102  Sum_probs=62.0

Q ss_pred             CCCeEEEEECCC------ChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHH
Q 031223           23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL   92 (163)
Q Consensus        23 ~~~~Ilvid~~~------~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~   92 (163)
                      ...+|+||+...      .+..++.++|+++|+++..++......+.+.  +.|+|+++||.....    ....+.+.|+
T Consensus        30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~~~~~~~~l~~~gl~~~l~  107 (229)
T 1fy2_A           30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMA  107 (229)
T ss_dssp             TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred             CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCcHHHHHHHHHHCChHHHHH
Confidence            357899999864      4666788999999998777643211225555  689999988742110    0011356677


Q ss_pred             H-hCCCCCEEEEehHHHHHHHH
Q 031223           93 E-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        93 ~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      + +++++|++|+|.|||+|+..
T Consensus       108 ~~~~~G~p~~G~sAG~~~l~~~  129 (229)
T 1fy2_A          108 DRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHHHTTCEEEEETHHHHHTSSB
T ss_pred             HHHHcCCEEEEECHHHHhhccc
Confidence            6 46789999999999999874

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=98.91  E-value=2.6e-09  Score=79.84  Aligned_cols=75  Identities=16%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             HHHHHHHHcCCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEE
Q 031223           39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLF  101 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvL  101 (163)
                      ...+.|++.|++++++..+.              ..++++...+||+|||+||++..  .+.+.+.++++++ ++++||.
T Consensus        26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~ia  105 (177)
T 4hcj_A           26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVA  105 (177)
T ss_dssp             HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEE
Confidence            46788999999999886542              12344444579999999997532  2345678889885 7899999


Q ss_pred             EEehHHHHHHHH
Q 031223          102 GVCMGLQCIGEA  113 (163)
Q Consensus       102 GIC~G~QlLa~a  113 (163)
                      +||.|.++|+.+
T Consensus       106 aIC~g~~~La~a  117 (177)
T 4hcj_A          106 GIGSGVVIMANA  117 (177)
T ss_dssp             EETTHHHHHHHT
T ss_pred             EecccHHHHHHC
Confidence            999999999986

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=98.87  E-value=8.3e-09  Score=77.60  Aligned_cols=93  Identities=13%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCCC----------------HHHHhccCCCEEEeCCCCCC-
Q 031223           21 KNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGA-   80 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~~----------------~~~~~~~~~dgvvl~GG~~~-   80 (163)
                      +.+.++|+|+-+.+..   ...+.+.|++.|+++.++..+...                +++....++|+|||+||.+. 
T Consensus        20 ~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~   99 (193)
T 1oi4_A           20 AGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPD   99 (193)
T ss_dssp             TTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHH
T ss_pred             hccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHH
Confidence            3345678888542221   234788899999999988764211                11222236999999999532 


Q ss_pred             -CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           81 -PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        81 -~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                       ..+...+.++|+++ ++++|++|||.|.|+|+.+
T Consensus       100 ~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A          100 YLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             HHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             HhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence             11234578888884 7889999999999999997

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.87  E-value=1.6e-09  Score=82.84  Aligned_cols=88  Identities=11%  Similarity=0.085  Sum_probs=61.6

Q ss_pred             CCeEEEEECCCC------hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCC------hhHHH
Q 031223           24 KNPIIVIDNYDS------FTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS------GISLQ   89 (163)
Q Consensus        24 ~~~Ilvid~~~~------~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~------~~~~~   89 (163)
                      +.+|++|+...+      +..++.++|+++|+++++++....+.++...  .+.|+|+++||..  ...      ..+.+
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~--~~l~~~L~~~gl~~  104 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT--FFLLQELKRTGADK  104 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH--HHHHHHHHHHTHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH--HHHHHHHHHCChHH
Confidence            479999975433      6778999999999998887533223322211  2799999988632  211      12466


Q ss_pred             HHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           90 TVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        90 ~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      .|++ +.+++|++|||.|+|+++..
T Consensus       105 ~l~~~~~~G~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A          105 LILEEIAAGKLYIGESAGAVITSPN  129 (206)
T ss_dssp             HHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred             HHHHHHHcCCeEEEECHHHHHhccc
Confidence            6777 46789999999999999763

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=98.69  E-value=1.8e-08  Score=73.73  Aligned_cols=90  Identities=13%  Similarity=0.139  Sum_probs=62.9

Q ss_pred             CCeEEEEECCCC--h-HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--CCC
Q 031223           24 KNPIIVIDNYDS--F-TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDS   84 (163)
Q Consensus        24 ~~~Ilvid~~~~--~-~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--~d~   84 (163)
                      ++||+|+-+.+.  . .....+.|++.|+++.++.++..              +++++...+||+||++||.+..  ...
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~   81 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLN   81 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccC
Confidence            467888844221  1 22467889999999998876420              1233333369999999996421  233


Q ss_pred             hhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ..+.++++++ ++++|+.+||.|.++|+.+
T Consensus        82 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           82 EKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            4578889884 7899999999999999987

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=98.65  E-value=5.5e-08  Score=75.13  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             CeEEEEECC----CCh----HHHHHHHHHHcCCEEEEEeCCCC--------------------------------CHHHH
Q 031223           25 NPIIVIDNY----DSF----TYNLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL   64 (163)
Q Consensus        25 ~~Ilvid~~----~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------------------------~~~~~   64 (163)
                      ++|+|+-..    +++    .....+.|++.|+++.++.++..                                +++++
T Consensus         7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~   86 (232)
T 1vhq_A            7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   86 (232)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHc
Confidence            478888541    233    22356889999999998875421                                01222


Q ss_pred             hccCCCEEEeCCCCCC---CCC----------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC-Ce
Q 031223           65 KRKNPRGVLISPGPGA---PQD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG-GK  117 (163)
Q Consensus        65 ~~~~~dgvvl~GG~~~---~~d----------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G-g~  117 (163)
                      ...+||+|||+||.+.   ..+          ...+.++++++ ++++||.+||.|.++|+.++. |+
T Consensus        87 ~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~Gr  154 (232)
T 1vhq_A           87 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPL  154 (232)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCC
T ss_pred             CcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCCC
Confidence            1236999999999653   222          34578889885 789999999999999999976 64

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=98.59  E-value=1.1e-07  Score=71.40  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             CCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC---------------CHHHH-hccCCCEEEeCCCCCCCC-
Q 031223           23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ-   82 (163)
Q Consensus        23 ~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~---------------~~~~~-~~~~~dgvvl~GG~~~~~-   82 (163)
                      |.++|+|+-+.+-.   ...+.+.|++.|+++.++..+..               +++++ ...+||.||++||.+.+. 
T Consensus         2 m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~   81 (197)
T 2rk3_A            2 ASKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN   81 (197)
T ss_dssp             CCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred             CCCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence            45678888543221   22367889999999998875421               23444 335799999999964332 


Q ss_pred             --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                        +...+.++++++ ++++||.+||.|.++|+.+
T Consensus        82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           82 LSESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence              234568888884 7889999999999999987

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=98.58  E-value=1.5e-07  Score=73.46  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             CCeEEEEEC----CCChH----HHHHHHHHHcCCEEEEEeCCCC--------------------------------CHHH
Q 031223           24 KNPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDEL--------------------------------TVEE   63 (163)
Q Consensus        24 ~~~Ilvid~----~~~~~----~~~~~~l~~~G~~~~v~~~~~~--------------------------------~~~~   63 (163)
                      .++|+|+=.    +++|.    ....+.|++.|++++++.++..                                ++++
T Consensus        23 ~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d  102 (242)
T 3l3b_A           23 ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ  102 (242)
T ss_dssp             -CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred             cCEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence            357888843    23332    1366889999999998876421                                0112


Q ss_pred             HhccCCCEEEeCCCCCCC--------------CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223           64 LKRKNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        64 ~~~~~~dgvvl~GG~~~~--------------~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~  114 (163)
                      +...+||+|||+||.+..              .....+.++++++ ++++|+.+||.|.++|+.+-
T Consensus       103 v~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          103 IRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             CCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             CCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence            222469999999996421              1224578888885 78999999999999999986

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=98.55  E-value=7.8e-08  Score=71.87  Aligned_cols=91  Identities=10%  Similarity=0.103  Sum_probs=63.4

Q ss_pred             CCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCC-CC--------------HHHHhccCCCEEEeCCCCCCCC
Q 031223           22 NNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAPQ   82 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~-~~--------------~~~~~~~~~dgvvl~GG~~~~~   82 (163)
                      .|++||+|+=. ++|    .....+.|++.|+++.++.++. .+              ++++...+||.||++||.....
T Consensus         3 ~m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~   81 (190)
T 4e08_A            3 HMSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSN   81 (190)
T ss_dssp             -CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHH
T ss_pred             CCCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHH
Confidence            45567888854 233    2236689999999999987652 11              2333334699999999842221


Q ss_pred             ---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 ---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                         ....+.++++++ ++++||.+||.|.++|+.+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           82 AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             HhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence               234568888884 7899999999999999986

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=98.51  E-value=1.3e-07  Score=71.71  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=62.6

Q ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCCC-----------------CHHHHhccCCCEEEeCCCCCCCC--
Q 031223           25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ--   82 (163)
Q Consensus        25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~~-----------------~~~~~~~~~~dgvvl~GG~~~~~--   82 (163)
                      ++|+|+-+.+..   .....+.|++.|+++.++.++..                 +++++...+||+|||+||.+.+.  
T Consensus         3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l   82 (205)
T 2ab0_A            3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF   82 (205)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred             cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence            468887543222   22366889999999998876421                 13344335799999999964332  


Q ss_pred             -CChhHHHHHHHh-CCCCCEEEEehHH-HHHHHH
Q 031223           83 -DSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (163)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIC~G~-QlLa~a  113 (163)
                       +...+.++++++ ++++||.+||.|. ++|+.+
T Consensus        83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence             234567888884 7889999999999 999975

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=98.50  E-value=3.2e-07  Score=68.32  Aligned_cols=90  Identities=17%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC-------------------CHHHHhccCCCEEEeCCCCC
Q 031223           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG   79 (163)
Q Consensus        23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~-------------------~~~~~~~~~~dgvvl~GG~~   79 (163)
                      ..++|+|+-+ +++    ...+.+.|++.|+++.++..+..                   +++++...+||+|||+||..
T Consensus         8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~   86 (190)
T 2vrn_A            8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV   86 (190)
T ss_dssp             TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred             CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence            3467888854 333    22366889999999988865421                   11222223799999999963


Q ss_pred             CC---CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           80 AP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        80 ~~---~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+   .....+.++++++ ++++||.+||.|.++|+.+
T Consensus        87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            32   2345678899884 7889999999999999996

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=98.39  E-value=9.6e-07  Score=67.15  Aligned_cols=88  Identities=13%  Similarity=0.200  Sum_probs=60.7

Q ss_pred             CeEEEE--ECCCC-hHHHHHHHHHHc-CCEEEEEeCCCC-------------CHHHHhccCCCEEEeCCCCCCCCCChhH
Q 031223           25 NPIIVI--DNYDS-FTYNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGIS   87 (163)
Q Consensus        25 ~~Ilvi--d~~~~-~~~~~~~~l~~~-G~~~~v~~~~~~-------------~~~~~~~~~~dgvvl~GG~~~~~d~~~~   87 (163)
                      .+|+|+  |.... ....+.+.|++. |+++.++..+..             +++++ ..++|.||++||.+.....+.+
T Consensus         4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l   82 (206)
T 3f5d_A            4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKL   82 (206)
T ss_dssp             EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHH
T ss_pred             cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHH
Confidence            467777  32222 233567788877 889888865421             11222 2379999999997533344567


Q ss_pred             HHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           88 LQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        88 ~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .++++++ ++++|+.+||.|.++|+.+
T Consensus        83 ~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           83 LHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             HHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            8899885 7899999999999999987

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=98.37  E-value=7.5e-07  Score=67.99  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             HHHHHHHHcCCEEEEEeCCCCC----H-----------------------HHHhccCCCEEEeCCCCCCC---CCChhHH
Q 031223           39 NLCQYMGELGYHFEVYRNDELT----V-----------------------EELKRKNPRGVLISPGPGAP---QDSGISL   88 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~~~----~-----------------------~~~~~~~~dgvvl~GG~~~~---~d~~~~~   88 (163)
                      ...+.|++.|+++.++.++...    .                       +++...+||+|||+||.+..   .....+.
T Consensus        33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~  112 (224)
T 1u9c_A           33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ  112 (224)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred             HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence            3677899999999998764211    0                       11112379999999997642   2345678


Q ss_pred             HHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           89 QTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        89 ~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ++++++ ++++||.+||.|.++|+.+
T Consensus       113 ~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A          113 YVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHHCCCEEEEEChHHHHHHHc
Confidence            899885 7889999999999999976

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.36  E-value=6.1e-07  Score=65.95  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             CCeEEEEECCC--C---hHHHHHHHHHHcCCEEEEEeCCC---------------CCHHHH--hccCCCEEEeCCC--C-
Q 031223           24 KNPIIVIDNYD--S---FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P-   78 (163)
Q Consensus        24 ~~~Ilvid~~~--~---~~~~~~~~l~~~G~~~~v~~~~~---------------~~~~~~--~~~~~dgvvl~GG--~-   78 (163)
                      +++|+|+-+..  +   |..  .+.+.+.|+++.++..+.               ..++++  ...+||.||++||  . 
T Consensus         2 ~~~v~ill~~~~~g~~~~~~--~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~   79 (175)
T 3cne_A            2 AKKVAVLAVNPVNGCGLFQY--LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVP   79 (175)
T ss_dssp             CCEEEEEECSSBCHHHHHHH--HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGG
T ss_pred             CcEEEEEEecCcCCCccchh--hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcc
Confidence            46788886531  2   322  233336799999887641               112333  2247999999999  4 


Q ss_pred             CCC--C---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           79 GAP--Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        79 ~~~--~---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +..  .   ....+.++++++ ++++|+.+||.|.++|+.+
T Consensus        80 ~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           80 VFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             cHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            321  1   223467888884 7889999999999999987

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=98.33  E-value=1.2e-06  Score=66.63  Aligned_cols=89  Identities=6%  Similarity=0.017  Sum_probs=60.4

Q ss_pred             CeEEEE--ECCCC-hHHHHHHHHH--------HcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCC
Q 031223           25 NPIIVI--DNYDS-FTYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPG   79 (163)
Q Consensus        25 ~~Ilvi--d~~~~-~~~~~~~~l~--------~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~   79 (163)
                      .+|+|+  |.... ....+.+.|+        +.++++.++..+..              +++++...+||.|||+||..
T Consensus         6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~   85 (212)
T 3efe_A            6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT   85 (212)
T ss_dssp             CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred             cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence            357666  32222 2345677787        67889988876421              12333334799999999965


Q ss_pred             CCC-CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           80 APQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        80 ~~~-d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ... ....+.++++++ ++++||.+||.|..+|+.+
T Consensus        86 ~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           86 WSEEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            322 224578888884 7889999999999999986

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=98.32  E-value=2e-07  Score=70.82  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=62.6

Q ss_pred             CCCCeEEEEECCCCh---HHHHHHHHHHcCCEEEEEeCCC-C--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223           22 NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGAP--   81 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~~~~~-~--------------~~~~~~~~~~dgvvl~GG~~~~--   81 (163)
                      +|.++|+|+-..+-.   ...+.+.|+..|+++.++..+. .              +++++...+||.|||+||...+  
T Consensus         7 ~m~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~   86 (208)
T 3ot1_A            7 GMSKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA   86 (208)
T ss_dssp             --CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH
T ss_pred             ccCCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH
Confidence            345578888543221   2236788999999999887652 1              1223322479999999996322  


Q ss_pred             -CCChhHHHHHHHh-CCCCCEEEEehHH-HHHHHH
Q 031223           82 -QDSGISLQTVLEL-GPTVPLFGVCMGL-QCIGEA  113 (163)
Q Consensus        82 -~d~~~~~~~i~~~-~~~~PvLGIC~G~-QlLa~a  113 (163)
                       .....+.++++++ ++++||.+||.|. .+|+.+
T Consensus        87 l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           87 FADSTALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             HHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             HhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence             2344678889884 7899999999999 899875

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=98.31  E-value=8.3e-07  Score=66.10  Aligned_cols=89  Identities=13%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             CeEEEEEC--CC-ChHHHHHHHHHH-cCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC-CCCh
Q 031223           25 NPIIVIDN--YD-SFTYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG   85 (163)
Q Consensus        25 ~~Ilvid~--~~-~~~~~~~~~l~~-~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-~d~~   85 (163)
                      ++|+|+=.  .. .....+.+.|++ .|+++.++..+..              ++++....+||+|||+||.+.. ....
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~   81 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA   81 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence            35777722  11 122346778888 8999998876421              1222222379999999996421 2234


Q ss_pred             hHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+.++++++ ++++||.+||.|.++|+.+
T Consensus        82 ~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           82 DLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            567888884 7889999999999999986

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=98.31  E-value=2.5e-06  Score=75.16  Aligned_cols=91  Identities=12%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             CCCeEEEEECCCChH----HHHHHHHHHcCCEEEEEeCCCC-----CHHHHhccCCCEEEeCCCCCCC----------CC
Q 031223           23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGAP----------QD   83 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~----~~~~~~l~~~G~~~~v~~~~~~-----~~~~~~~~~~dgvvl~GG~~~~----------~d   83 (163)
                      ++.||+|+=..+.+.    ..+.++|++.|+.++++.+...     ++++.....||+|||.||..+.          ..
T Consensus       536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~  615 (688)
T 3ej6_A          536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFP  615 (688)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSC
T ss_pred             cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhcc
Confidence            446798883322233    3477899999999999976321     2333344579999999996541          12


Q ss_pred             ChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           84 SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        84 ~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+...+++++ ++.+|||.+||.|-|+|..+
T Consensus       616 ~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          616 AGRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             TTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence            3457888988 58899999999999999875

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.28  E-value=9e-07  Score=73.18  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC------------------------------CHHHHhc
Q 031223           21 KNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKR   66 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~   66 (163)
                      |.+.+||+|+=. ++|    .....+.|++.|++++++.++..                              ++++...
T Consensus         9 m~~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~   87 (396)
T 3uk7_A            9 MANSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDL   87 (396)
T ss_dssp             --CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCG
T ss_pred             hhcCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCc
Confidence            445567888843 233    22367889999999998865421                              1222222


Q ss_pred             cCCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           67 KNPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        67 ~~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+||.||++||.+..  .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus        88 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           88 SKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             ccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            479999999996421  2334578888884 7899999999999999987

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=98.22  E-value=3e-06  Score=69.99  Aligned_cols=91  Identities=18%  Similarity=0.271  Sum_probs=64.1

Q ss_pred             CCCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC------------------------------CHHHHhcc
Q 031223           22 NNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRK   67 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~------------------------------~~~~~~~~   67 (163)
                      .+..+|+|+=. +++    .....+.|++.|+++.++.++..                              ++++....
T Consensus       203 ~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~  281 (396)
T 3uk7_A          203 GANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSS  281 (396)
T ss_dssp             CCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred             hccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcc
Confidence            44567888843 233    22467889999999998865411                              12233224


Q ss_pred             CCCEEEeCCCCCCC--CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        68 ~~dgvvl~GG~~~~--~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +||.||++||.+..  .....+.++++++ ++++|+.+||.|.++|+.+
T Consensus       282 ~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          282 SYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             cCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            79999999996421  2344578888884 7899999999999999997

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=98.16  E-value=1.7e-06  Score=67.68  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             HHHHHHHcCCEEEEEeCCCCC-------------------------------------HHHHhccCCCEEEeCCCCCCCC
Q 031223           40 LCQYMGELGYHFEVYRNDELT-------------------------------------VEELKRKNPRGVLISPGPGAPQ   82 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------------~~~~~~~~~dgvvl~GG~~~~~   82 (163)
                      ..+.|++.|+++++..+....                                     ++++...+||+|+|+||.+...
T Consensus        40 p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~  119 (247)
T 3n7t_A           40 PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALY  119 (247)
T ss_dssp             HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHHHHHHHCCEEGGGSCGGGCSEEEECCSTTHHH
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHHHHHhccCCCHHHCChhhCCEEEEeCCCchhh
Confidence            667899999999988653110                                     0111123699999999975422


Q ss_pred             ---CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 ---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 ---d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                         ....+.++++++ ++++||.+||.|.++|+.+
T Consensus       120 ~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          120 DFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             HGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence               234578888885 7899999999999999886

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=98.14  E-value=3.1e-06  Score=64.24  Aligned_cols=90  Identities=8%  Similarity=0.049  Sum_probs=58.4

Q ss_pred             CCCCeEEEEEC--CCCh-HHHHHHHHHHc-------CCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCC
Q 031223           22 NNKNPIIVIDN--YDSF-TYNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPG   77 (163)
Q Consensus        22 ~~~~~Ilvid~--~~~~-~~~~~~~l~~~-------G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG   77 (163)
                      ++.++|+|+=+  .... ...+.+.|+..       ++++.++..+.              .+++++  .++|.|||+||
T Consensus         6 ~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~--~~~D~livpGg   83 (209)
T 3er6_A            6 KKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSF--DFTNILIIGSI   83 (209)
T ss_dssp             -CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGC--SCCSEEEECCC
T ss_pred             CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCcccc--CCCCEEEECCC
Confidence            34456777732  2222 22355666654       37777775432              112232  37999999998


Q ss_pred             CCCC----CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           78 PGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        78 ~~~~----~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .+..    .+...+.++++++ ++++++.+||-|..+|+.+
T Consensus        84 ~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           84 GDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             SCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            6421    2345678899885 7889999999999999997

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=98.13  E-value=1.8e-06  Score=76.56  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--C
Q 031223           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--Q   82 (163)
Q Consensus        23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--~   82 (163)
                      ++.+|+|+=. ++|    ...+.+.|++.|++++++.....              ++++.....||+|||+|| +..  .
T Consensus       599 ~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr  676 (753)
T 3ttv_A          599 KGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIA  676 (753)
T ss_dssp             TTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTT
T ss_pred             CCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhh
Confidence            4468888832 233    23477899999999999875421              122233346999999999 322  2


Q ss_pred             CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ....+.++|+++ ..+|||.+||.|.++|+.|
T Consensus       677 ~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          677 DNGDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             TCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             hCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence            345678999984 7899999999999999876

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=98.13  E-value=2.8e-06  Score=64.23  Aligned_cols=89  Identities=13%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             CCeEEEEECCCChH----HHHHHHHHHcC------CEEEEEeCCCC-------------CHHHHhccCCCEEEeCCCCCC
Q 031223           24 KNPIIVIDNYDSFT----YNLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        24 ~~~Ilvid~~~~~~----~~~~~~l~~~G------~~~~v~~~~~~-------------~~~~~~~~~~dgvvl~GG~~~   80 (163)
                      .++|+|+=+. +|.    ..+.+.|+..+      +++.++..+..             ++++....+||.|||+||...
T Consensus         5 ~~~v~ill~~-g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~   83 (202)
T 3gra_A            5 PYRVDFILLE-HFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRT   83 (202)
T ss_dssp             CEEEEEEECT-TBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTC
T ss_pred             cEEEEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCch
Confidence            3567777442 332    23556666553      77877765421             112221247999999999754


Q ss_pred             CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ....+.+.++++++ ++++++.+||-|..+|+.+
T Consensus        84 ~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           84 PLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             CSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            33226678899884 6889999999999999997

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=98.09  E-value=3.3e-06  Score=65.86  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             HHHHHHHcCCEEEEEeCCCCC------------------------------------HHHHhccCCCEEEeCCCCCCCC-
Q 031223           40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ-   82 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~------------------------------------~~~~~~~~~dgvvl~GG~~~~~-   82 (163)
                      ..+.|++.|++++++.+....                                    ++++...+||+|+|+||.+... 
T Consensus        34 p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~  113 (244)
T 3kkl_A           34 SFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFD  113 (244)
T ss_dssp             HHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhh
Confidence            667899999999988653110                                    1111223699999999975422 


Q ss_pred             --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                        ....+.++++++ ++++||.+||.|..+|+.+
T Consensus       114 l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A          114 YPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence              334578888884 7899999999999999876

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.08  E-value=4.3e-06  Score=68.93  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             CCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCC----------------HHHHhccCCCEEEeCCCCCCC--
Q 031223           24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP--   81 (163)
Q Consensus        24 ~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~----------------~~~~~~~~~dgvvl~GG~~~~--   81 (163)
                      ..+|+|+-+ ++|    ...+.+.|+..|+++.++..+...                ++++...+||.|||+||.+..  
T Consensus        10 mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l   88 (365)
T 3fse_A           10 KKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKM   88 (365)
T ss_dssp             -CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHH
T ss_pred             ceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhc
Confidence            356888743 233    223678899999999988754211                111212259999999996421  


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .....+.++++++ .+++||.+||.|..+|+.+
T Consensus        89 ~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           89 RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence            2334678889884 7899999999999999986

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=98.07  E-value=3.8e-06  Score=65.18  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             HHHHHHHcCCEEEEEeCCCCC------------------------------------HHHHhccCCCEEEeCCCCCCCC-
Q 031223           40 LCQYMGELGYHFEVYRNDELT------------------------------------VEELKRKNPRGVLISPGPGAPQ-   82 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~------------------------------------~~~~~~~~~dgvvl~GG~~~~~-   82 (163)
                      ..+.|++.|++++++.++...                                    ++++...+||+|||+||.+... 
T Consensus        34 p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~  113 (243)
T 1rw7_A           34 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD  113 (243)
T ss_dssp             HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHHhhhccCCChHHCCHhhCcEEEECCCCCchhh
Confidence            667889999999988653210                                    1111123699999999976322 


Q ss_pred             --CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 --DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 --d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                        ....+.++++++ ++++||.+||.|.++|+.+
T Consensus       114 l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a  147 (243)
T 1rw7_A          114 YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence              234578888885 7899999999999999886

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=98.04  E-value=6.5e-06  Score=63.52  Aligned_cols=88  Identities=10%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             CCCeEEEEECCCCh----HHHHHHHHHH-cCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223           23 NKNPIIVIDNYDSF----TYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--   81 (163)
Q Consensus        23 ~~~~Ilvid~~~~~----~~~~~~~l~~-~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--   81 (163)
                      |.++|+|+=+. +|    ...+.+.|+. .|+++.++..+..              +++++  .+||.|||+||++..  
T Consensus         4 m~~~V~ill~~-gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~--~~~D~livpGG~g~~~~   80 (231)
T 3noq_A            4 MAVQIGFLLFP-EVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADC--PPLDVICIPGGTGVGAL   80 (231)
T ss_dssp             CCEEEEEECCT-TCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTC--CCCSEEEECCSTTHHHH
T ss_pred             CcEEEEEEEeC-CCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHC--CcCCEEEECCCCChhhh
Confidence            44678888432 33    2236678877 6888888765410              11222  269999999997532  


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ...+.+.++++++ .++++|.+||-|..+|+.+
T Consensus        81 ~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           81 MEDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             TTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            2345678899984 8899999999999999986

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=98.01  E-value=1.4e-05  Score=70.57  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             CCCCeEEEEECC-CChHH----HHHHHHHHcCCEEEEEeCCCC-----CHHHHhccCCCEEEeCCCCCC-----------
Q 031223           22 NNKNPIIVIDNY-DSFTY----NLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPGPGA-----------   80 (163)
Q Consensus        22 ~~~~~Ilvid~~-~~~~~----~~~~~l~~~G~~~~v~~~~~~-----~~~~~~~~~~dgvvl~GG~~~-----------   80 (163)
                      ..+.||+|+=.. +++..    .+.++|++.|++++++.....     ++++.....||+|||.||..+           
T Consensus       527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~  606 (688)
T 2iuf_A          527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP  606 (688)
T ss_dssp             CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred             CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence            345689888541 34432    477899999999999976421     122333457999999999533           


Q ss_pred             -----C---CCChhHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           81 -----P---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        81 -----~---~d~~~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                           +   ...+...+++++ +..+|||.+||.|-++|..+
T Consensus       607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          607 SAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             CTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             ccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence                 2   233457888888 57889999999999999865

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=97.91  E-value=1.3e-05  Score=62.81  Aligned_cols=89  Identities=12%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             CCCeEEEEECCCChH----HHHHHHH-HHcCCEEEEEeCCCCC--------------HHHHhccCCCEEEeCCCC-CC--
Q 031223           23 NKNPIIVIDNYDSFT----YNLCQYM-GELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGP-GA--   80 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~----~~~~~~l-~~~G~~~~v~~~~~~~--------------~~~~~~~~~dgvvl~GG~-~~--   80 (163)
                      +.++|+|+=+. +|.    ....+.| +..|+++.++..+...              +++.. ..||.|||+||. +.  
T Consensus        22 m~~~I~ill~~-gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~   99 (253)
T 3ewn_A           22 GDEQIAMLVYP-GMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLA   99 (253)
T ss_dssp             CCCEEEEECCT-TBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHH
T ss_pred             CCeEEEEEeCC-CCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhh
Confidence            44678888442 332    2366778 5678999988754211              12222 257999999996 42  


Q ss_pred             CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ......+.++|+++ +++++|.+||-|..+|+.+
T Consensus       100 l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A          100 AASDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             HTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             hccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            12345678999984 8899999999999999987

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=97.89  E-value=9.8e-06  Score=71.95  Aligned_cols=92  Identities=12%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             CCCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC---
Q 031223           23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---   81 (163)
Q Consensus        23 ~~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~---   81 (163)
                      .+++|+|+=.. ++    ...+.+.|++.|+++.++.....              +++++....||+|||+||....   
T Consensus       533 ~~rkVaILl~d-Gfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l  611 (715)
T 1sy7_A          533 KSRRVAIIIAD-GYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL  611 (715)
T ss_dssp             TTCEEEEECCT-TBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred             CCCEEEEEEcC-CCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence            34678888442 32    22477889999999999876421              1122222368999999984322   


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      .....+.++|+++ ++++||.+||.|..+|+.++|
T Consensus       612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence            1234578888884 789999999999999999854

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=97.80  E-value=1.8e-05  Score=63.13  Aligned_cols=75  Identities=15%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             HHHHHHHcCCEEEEEeCCCCC-------------------------------HHHH-----hccCCCEEEeCCCCCCCCC
Q 031223           40 LCQYMGELGYHFEVYRNDELT-------------------------------VEEL-----KRKNPRGVLISPGPGAPQD   83 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~~~-------------------------------~~~~-----~~~~~dgvvl~GG~~~~~d   83 (163)
                      ..+.|++.|+++.++.++...                               ++++     ...+||+|||+||.+...+
T Consensus        81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~  160 (291)
T 1n57_A           81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG  160 (291)
T ss_dssp             HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSS
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchhhh
Confidence            667889999999988754211                               1221     1247999999999654322


Q ss_pred             ---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223           84 ---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        84 ---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~  114 (163)
                         ...+.++|+++ +++++|.+||.|..+|+.+-
T Consensus       161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~  195 (291)
T 1n57_A          161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  195 (291)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence               34578888885 78899999999999888763

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=97.79  E-value=7.8e-06  Score=62.17  Aligned_cols=89  Identities=12%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             CCCeEEEEECCCC--h-HHHHHHHHHHc--CCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC--
Q 031223           23 NKNPIIVIDNYDS--F-TYNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--   81 (163)
Q Consensus        23 ~~~~Ilvid~~~~--~-~~~~~~~l~~~--G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~--   81 (163)
                      ..++|+|+=..+-  . ...+.+.|+..  ++++.++..+..              .+++.  ..+|.|||+||.+..  
T Consensus         3 ~~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~--~~~D~livpGG~~~~~~   80 (211)
T 3mgk_A            3 LSYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE--NIEKILFVPGGSGTREK   80 (211)
T ss_dssp             -CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCS--SSEEEEEECCSTHHHHH
T ss_pred             CceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhC--CCCCEEEECCCcchhhh
Confidence            3467887743221  1 22366788776  478887765320              11111  148999999996432  


Q ss_pred             CCChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           82 QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        82 ~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      .....+.++++++ +++++|.+||-|..+|+.+
T Consensus        81 ~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           81 VNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             TTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence            2334678889884 6889999999999999986

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=97.58  E-value=7.7e-05  Score=55.89  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             eEEEEEC--CCCh-HHHHHHHHHHcCCEEEEEeCCC-----------------CCHHHHh-----ccCCCEEEeCCCCCC
Q 031223           26 PIIVIDN--YDSF-TYNLCQYMGELGYHFEVYRNDE-----------------LTVEELK-----RKNPRGVLISPGPGA   80 (163)
Q Consensus        26 ~Ilvid~--~~~~-~~~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~-----~~~~dgvvl~GG~~~   80 (163)
                      ||+|+=+  .... .....+.|++.|++++++....                 ..++++.     ..+||+|||+||...
T Consensus         6 kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~   85 (194)
T 4gdh_A            6 KVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG   85 (194)
T ss_dssp             CEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh
Confidence            4666632  2222 2236778999999887664311                 0111211     125899999999432


Q ss_pred             C---CCChhHHHHHHHh-C-CCCCEEEEehHHHHHHHH
Q 031223           81 P---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        81 ~---~d~~~~~~~i~~~-~-~~~PvLGIC~G~QlLa~a  113 (163)
                      +   .+.+.+.++++++ + .++++..||.|. +|+.+
T Consensus        86 ~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~a  122 (194)
T 4gdh_A           86 AKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKT  122 (194)
T ss_dssp             HHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHH
T ss_pred             HhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhh
Confidence            2   2345678899885 4 579999999998 45544

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=97.43  E-value=7.3e-05  Score=57.90  Aligned_cols=84  Identities=20%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             CeEEEEECCCCh----HHHHHHHHHHcC--CEEEEEeCCC--------------CCHHHHhccCCCEEEeCCC-CCCC--
Q 031223           25 NPIIVIDNYDSF----TYNLCQYMGELG--YHFEVYRNDE--------------LTVEELKRKNPRGVLISPG-PGAP--   81 (163)
Q Consensus        25 ~~Ilvid~~~~~----~~~~~~~l~~~G--~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG-~~~~--   81 (163)
                      ++|+|+=. ++|    ...+.+.|+..+  +++.++. +.              .++++  ..+||.|||+|| ++..  
T Consensus        21 ~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~--~~~~D~liVPGG~~g~~~l   96 (236)
T 3bhn_A           21 YKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSE--VKEQDVVLITSGYRGIPAA   96 (236)
T ss_dssp             EEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGG--GGGCSEEEECCCTTHHHHH
T ss_pred             CEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCccccc--ccCCCEEEEcCCccCHhhh
Confidence            46777743 233    223667777755  6777775 31              01222  237999999999 4431  


Q ss_pred             CCChhHHHHHHHhCCCC-CEEEEehHHHHHHHH
Q 031223           82 QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA  113 (163)
Q Consensus        82 ~d~~~~~~~i~~~~~~~-PvLGIC~G~QlLa~a  113 (163)
                      .....+.+++ .+.+++ +|.+||-|..+|+.+
T Consensus        97 ~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           97 LQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             HTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred             ccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence            1234567788 666666 999999999999987

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=96.92  E-value=0.0005  Score=54.90  Aligned_cols=104  Identities=10%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             CChhhHhhHHhhhcCCCCCeEEEEECCCC----hHHHHHHHHHHcCC-EEEEEeCCCC---CHHHH-hc-cCCCEEEeCC
Q 031223            7 VPISKSLYLDDKKSKNNKNPIIVIDNYDS----FTYNLCQYMGELGY-HFEVYRNDEL---TVEEL-KR-KNPRGVLISP   76 (163)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~Ilvid~~~~----~~~~~~~~l~~~G~-~~~v~~~~~~---~~~~~-~~-~~~dgvvl~G   76 (163)
                      +...|+.|++.....  ..+|++|-....    +...+.++++++|+ .+++++....   +.+++ .. .+.|+|+++|
T Consensus        41 ~~~i~~~~v~lagg~--~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~G  118 (291)
T 3en0_A           41 GREILQTFWSRSGGN--DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTG  118 (291)
T ss_dssp             CCHHHHHHHHHTTGG--GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECC
T ss_pred             hHHHHHHHHHHcCCC--CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECC
Confidence            577889998877532  478999955432    34557788888999 6777765311   11111 11 2799999999


Q ss_pred             CCCCCC----CChhHHHHHHH-hCCC-CCEEEEehHHHHHHH
Q 031223           77 GPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCMGLQCIGE  112 (163)
Q Consensus        77 G~~~~~----d~~~~~~~i~~-~~~~-~PvLGIC~G~QlLa~  112 (163)
                      |.....    ....+.+.|++ +.++ .|+.|.|-|+-+++.
T Consensus       119 Gnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          119 GDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             SCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             CCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            843110    11234667777 4677 999999999988765

>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6

Probab=96.39  E-value=0.18  Score=39.07  Aligned_cols=129  Identities=12%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEECCC--------------ChHHHHHHHHHHcCCEEEEEeCCCC----CHHHHhccCCCEEEeCCCCCCCC
Q 031223           21 KNNKNPIIVIDNYD--------------SFTYNLCQYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPGAPQ   82 (163)
Q Consensus        21 ~~~~~~Ilvid~~~--------------~~~~~~~~~l~~~G~~~~v~~~~~~----~~~~~~~~~~dgvvl~GG~~~~~   82 (163)
                      |....||+|..-+-              +....+.+.|++.|+++++...++.    +.+.+.  +||.||+.|......
T Consensus         4 ~~~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~   81 (252)
T 1t0b_A            4 MTTPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDE   81 (252)
T ss_dssp             --CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGG
T ss_pred             cCCCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCc
Confidence            44457899995321              1122357788889999998653221    223343  899999843211111


Q ss_pred             CChhHHHHHHH-hCCCCCEEEEehHH--HHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEe
Q 031223           83 DSGISLQTVLE-LGPTVPLFGVCMGL--QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSIS  154 (163)
Q Consensus        83 d~~~~~~~i~~-~~~~~PvLGIC~G~--QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~  154 (163)
                      ..++..+.+++ +.++.+++||=.|+  +-....+||.-. .+. .+.+....+.+.+ .++|+.+++|+.|.+.
T Consensus        82 l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f~-~~~-~~~~~~~~v~v~~-~~HPit~gl~~~f~~~  153 (252)
T 1t0b_A           82 VKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCN-LKW-READEKERLWVVA-PGHPIVEGIGPYIELE  153 (252)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCCC-CEE-EEEEEEEEEEESC-TTSGGGTTCCSEEEEE
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCccc-CCC-ccCCceEEEEECC-CCChhhcCCCCCcEec
Confidence            22334455555 57889999995553  445566787742 111 0112222344443 2789999999777654

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=95.96  E-value=0.018  Score=39.01  Aligned_cols=88  Identities=10%  Similarity=0.141  Sum_probs=51.6

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCC
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPT   97 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~   97 (163)
                      +++..++|+|||........+.+.|++.|+.+..........+.+....+|.||+-=.. ...+.-.+.+.+++  ....
T Consensus         2 ~~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~   80 (140)
T 3grc_A            2 SLAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRTRD   80 (140)
T ss_dssp             ---CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGGTT
T ss_pred             CCCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCcccCC
Confidence            45566899999976556667888899999987655321111223334579988883221 11112234555665  3457


Q ss_pred             CCEEEEehHHH
Q 031223           98 VPLFGVCMGLQ  108 (163)
Q Consensus        98 ~PvLGIC~G~Q  108 (163)
                      .|++-+.-...
T Consensus        81 ~~ii~~s~~~~   91 (140)
T 3grc_A           81 LAIVVVSANAR   91 (140)
T ss_dssp             CEEEEECTTHH
T ss_pred             CCEEEEecCCC
Confidence            89998875543

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=95.86  E-value=0.044  Score=36.54  Aligned_cols=83  Identities=13%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (163)
                      +.+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+--... ..+.-.+.+.+++.....|++
T Consensus         5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii   83 (130)
T 3eod_A            5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTPVL   83 (130)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEE
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEE
Confidence            4557899999765566778889999999876643211112233345799888832211 112223455666655678998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        84 ~~t~   87 (130)
T 3eod_A           84 VISA   87 (130)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            7764

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=95.66  E-value=0.016  Score=39.37  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=49.5

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~Pv  100 (163)
                      .+.++|+|||........+.+.|++.|+++..........+.+....+|.||+-- .  +. +.-.+.+.+++.....|+
T Consensus         2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~--~~~~g~~~~~~l~~~~~~~pi   78 (142)
T 2qxy_A            2 SLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-F--EGEESLNLIRRIREEFPDTKV   78 (142)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-T--TTHHHHHHHHHHHHHCTTCEE
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-C--CCCcHHHHHHHHHHHCCCCCE
Confidence            3557899999765566778889998999877543211112223345799888843 1  11 111234555554557999


Q ss_pred             EEEehH
Q 031223          101 FGVCMG  106 (163)
Q Consensus       101 LGIC~G  106 (163)
                      +.+.--
T Consensus        79 i~ls~~   84 (142)
T 2qxy_A           79 AVLSAY   84 (142)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            988643

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=95.54  E-value=0.016  Score=38.19  Aligned_cols=83  Identities=14%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTV   98 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~   98 (163)
                      ++|+++|+|+|........+.+.|+..|+.+............+....+|.+|+--......+.-.+.+.+++.  ....
T Consensus         2 ~mm~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~   81 (127)
T 2gkg_A            2 SHMSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV   81 (127)
T ss_dssp             ----CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence            45567899999765567778889988999876553211112222334799888732210011112345566664  4678


Q ss_pred             CEEEE
Q 031223           99 PLFGV  103 (163)
Q Consensus        99 PvLGI  103 (163)
                      |++-+
T Consensus        82 ~ii~~   86 (127)
T 2gkg_A           82 PIVII   86 (127)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            99887

>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*

Probab=95.23  E-value=0.054  Score=42.82  Aligned_cols=71  Identities=23%  Similarity=0.311  Sum_probs=49.8

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGI  103 (163)
                      |+|+|+-+.+.-...+.++|++.|+++.+....   .+.+  .++|.+|..||-+      .+....+.+ .. +|++||
T Consensus        30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~--~~~DlvIvlGGDG------T~L~aa~~~~~~-~PilGI   97 (278)
T 1z0s_A           30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEEL--ENFDFIVSVGGDG------TILRILQKLKRC-PPIFGI   97 (278)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGG--GGSSEEEEEECHH------HHHHHHTTCSSC-CCEEEE
T ss_pred             eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---cccc--CCCCEEEEECCCH------HHHHHHHHhCCC-CcEEEE
Confidence            679999765444667899999999988765432   1222  2689999999943      345555554 34 999999


Q ss_pred             ehHH
Q 031223          104 CMGL  107 (163)
Q Consensus       104 C~G~  107 (163)
                      =.|.
T Consensus        98 N~G~  101 (278)
T 1z0s_A           98 NTGR  101 (278)
T ss_dssp             ECSS
T ss_pred             CCCC
Confidence            8874

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=94.96  E-value=0.071  Score=36.08  Aligned_cols=82  Identities=11%  Similarity=0.044  Sum_probs=49.2

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      ..++|+|||........+.+.|...|+.+............+.  ...+|.||+--.. ...+.-.+.+.+++.....|+
T Consensus         2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i   80 (143)
T 3jte_A            2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITPHMAV   80 (143)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCTTCEE
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeE
Confidence            3468999997655667788899999987765532111122233  3479988873221 111122345566665567898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        81 i~ls~   85 (143)
T 3jte_A           81 IILTG   85 (143)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            87774

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=94.90  E-value=0.12  Score=34.27  Aligned_cols=83  Identities=16%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (163)
                      ..++|+|+|........+.+.|...|+.+............+... .+|.+|+--......+.-.+.+.+++.....|++
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii   83 (132)
T 2rdm_A            4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV   83 (132)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence            346899999765566678888998999876543211112223334 6998887322110012223455566555678998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        84 ~~s~   87 (132)
T 2rdm_A           84 YISG   87 (132)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            8764

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=94.87  E-value=0.026  Score=38.13  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=48.9

Q ss_pred             hcCCCCCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCC
Q 031223           19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT   97 (163)
Q Consensus        19 ~~~~~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~   97 (163)
                      .++....+|+|||........+.+.|++.| +++..........+.+....||.||+--.... .+.-++.+.+++....
T Consensus         9 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~   87 (135)
T 3snk_A            9 VTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGD-LLGKPGIVEARALWAT   87 (135)
T ss_dssp             ----CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTG-GGGSTTHHHHHGGGTT
T ss_pred             ccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCC-chHHHHHHHHHhhCCC
Confidence            344455789999986556777888999999 87765532111112222347898887211100 1111345666665457


Q ss_pred             CCEEEEeh
Q 031223           98 VPLFGVCM  105 (163)
Q Consensus        98 ~PvLGIC~  105 (163)
                      .|++-+.-
T Consensus        88 ~~ii~~s~   95 (135)
T 3snk_A           88 VPLIAVSD   95 (135)
T ss_dssp             CCEEEEES
T ss_pred             CcEEEEeC
Confidence            99988764

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=94.81  E-value=0.085  Score=36.29  Aligned_cols=83  Identities=13%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ..++|+|||........+.+.|...|+.+............+....+|.||+--.... .+.-.+.+.+++.....|++-
T Consensus         6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~   84 (154)
T 2rjn_A            6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVV   84 (154)
T ss_dssp             SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEE
Confidence            3478999997655677788889889988765432111122233347998887322111 122234555666556789988


Q ss_pred             EehH
Q 031223          103 VCMG  106 (163)
Q Consensus       103 IC~G  106 (163)
                      +.-.
T Consensus        85 ls~~   88 (154)
T 2rjn_A           85 ISGY   88 (154)
T ss_dssp             EECG
T ss_pred             EecC
Confidence            8754

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=94.78  E-value=0.044  Score=36.39  Aligned_cols=79  Identities=13%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPL  100 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~Pv  100 (163)
                      .++|+|+|........+.+.|++.|+.+..........+.+....+|.||+--..  +... -.+.+.+++.  ....|+
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~~g~~~~~~l~~~~~~~~~~i   80 (127)
T 3i42_A            3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PDTSGLALVKQLRALPMEKTSKF   80 (127)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SSSBHHHHHHHHHHSCCSSCCEE
T ss_pred             cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhhhccCCCCE
Confidence            4689999976556777888999999876655321111222334579988873221  1111 2345666664  567888


Q ss_pred             EEEe
Q 031223          101 FGVC  104 (163)
Q Consensus       101 LGIC  104 (163)
                      +-+.
T Consensus        81 i~~s   84 (127)
T 3i42_A           81 VAVS   84 (127)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=94.73  E-value=0.058  Score=36.44  Aligned_cols=83  Identities=13%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP   99 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~P   99 (163)
                      +..++|+|||........+.+.|+..|+.+............+....+|.||+--... ..+.-.+.+.+++  .....|
T Consensus         5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~p   83 (142)
T 3cg4_A            5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQGIA   83 (142)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTTEE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCCCC
Confidence            3457899999765567778889998998766543211112223334688888732211 1122234566666  345688


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++.+.-
T Consensus        84 ii~~s~   89 (142)
T 3cg4_A           84 IVMLTA   89 (142)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            887763

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=94.68  E-value=0.055  Score=36.36  Aligned_cols=82  Identities=12%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC---C-CCCChhHHHHHHHhCCCCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVP   99 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~---~-~~d~~~~~~~i~~~~~~~P   99 (163)
                      .++|+|+|........+.+.|+..|+.+............+....+|.+|+--...   . ..+.-.+.+.+++.....|
T Consensus         3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~   82 (140)
T 2qr3_A            3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP   82 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence            46899999765567778888988899877553211112223334688888733211   0 1111234555565556799


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++.+.-
T Consensus        83 ii~ls~   88 (140)
T 2qr3_A           83 VVLFTA   88 (140)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            998874

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=94.65  E-value=0.09  Score=36.36  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh--CCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~--~~~~Pv  100 (163)
                      ..++|+|||........+.+.|++.|+.+..........+.+....||.||+-=.. ...+.-.+.+.+++.  ....|+
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~~~~~pi   84 (154)
T 3gt7_A            6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPDLRTIPV   84 (154)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTTTTTSCE
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCcCCCCE
Confidence            34789999976556777888999999887655321111223334579988883221 111222345566654  267899


Q ss_pred             EEEe
Q 031223          101 FGVC  104 (163)
Q Consensus       101 LGIC  104 (163)
                      +-+.
T Consensus        85 i~~s   88 (154)
T 3gt7_A           85 ILLT   88 (154)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=94.65  E-value=0.073  Score=36.69  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      +...++|+|||....+...+.+.|.+.|+.+..........+.+....||.||+--.. ...+.-.+.+.+++.....|+
T Consensus        11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~i   89 (153)
T 3hv2_A           11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPSTTR   89 (153)
T ss_dssp             CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTSEE
T ss_pred             ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCCCeE
Confidence            4445789999976556677888999899877655321111222334579988873221 111122345566665567898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        90 i~~s~   94 (153)
T 3hv2_A           90 ILLTG   94 (153)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            87764

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=94.59  E-value=0.058  Score=36.72  Aligned_cols=83  Identities=8%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCCCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP   99 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~~~P   99 (163)
                      ++.++|+|||........+.+.|...|+.+............+....+|.||+--... ..+.-.+.+.+++  .....|
T Consensus         6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~p   84 (147)
T 2zay_A            6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMP-KISGMDLFNSLKKNPQTASIP   84 (147)
T ss_dssp             --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHTSTTTTTSC
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCC-CCCHHHHHHHHHcCcccCCCC
Confidence            3457899999876677788899998898776543210011222334799888832211 1122234555565  346789


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-+.-
T Consensus        85 ii~ls~   90 (147)
T 2zay_A           85 VIALSG   90 (147)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            998864

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=94.40  E-value=0.094  Score=35.24  Aligned_cols=79  Identities=9%  Similarity=0.041  Sum_probs=48.0

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCC-CCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TVP   99 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~-~~P   99 (163)
                      ...+.+|+|||........+.+.|+..|+.+............+....+|.+| .++    .+.-.+.+.+++. . ..|
T Consensus        15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~~   88 (137)
T 2pln_A           15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSIV   88 (137)
T ss_dssp             CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTSE
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCcc
Confidence            34557899999765566678888988999876543210112223334789888 222    1112345555555 5 789


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-+.-
T Consensus        89 ii~ls~   94 (137)
T 2pln_A           89 VLVSSD   94 (137)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            988764

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=94.37  E-value=0.077  Score=35.69  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHH-cCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH--hCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGP   96 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~-~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~--~~~   96 (163)
                      ++..++|+|+|........+.+.|+. .|+. +............+....+|.||+--... ..+.-.+.+.+++  ...
T Consensus         5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~   83 (143)
T 3cnb_A            5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV-GMDGFSICHRIKSTPATA   83 (143)
T ss_dssp             ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT-TSCHHHHHHHHHTSTTTT
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC-CCcHHHHHHHHHhCcccc
Confidence            34557899999765566678888988 8998 55543211112223334799888843211 1122234555665  345


Q ss_pred             CCCEEEEeh
Q 031223           97 TVPLFGVCM  105 (163)
Q Consensus        97 ~~PvLGIC~  105 (163)
                      ..|++.+.-
T Consensus        84 ~~~ii~~s~   92 (143)
T 3cnb_A           84 NIIVIAMTG   92 (143)
T ss_dssp             TSEEEEEES
T ss_pred             CCcEEEEeC
Confidence            789988764

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=94.29  E-value=0.097  Score=34.46  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL  101 (163)
                      +..+|+|+|....+...+.+.|+..|+.+............+....+|.+++-=.  .+. +.-.+.+.+++.....|++
T Consensus         2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (124)
T 1srr_A            2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVI   79 (124)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEE
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEE
Confidence            4468999997655666788888888987754432100112222347998887221  111 1123455566555678988


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        80 ~~s~   83 (124)
T 1srr_A           80 IMTA   83 (124)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            7763

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=94.29  E-value=0.097  Score=36.32  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhcc--CCCEEEeCCCCCCCCCChhHHHHHHHhCCCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~--~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~P   99 (163)
                      +.++|+|||........+.+.|++.|+.+. .........+.+...  .+|.||+--.. ...+.-.+.+.+++.....|
T Consensus        35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~  113 (157)
T 3hzh_A           35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFDKNAR  113 (157)
T ss_dssp             EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHCTTCC
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhCCCCc
Confidence            346899999765566678888999998875 332210112223333  68988873221 11122234566666566789


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-++-
T Consensus       114 ii~ls~  119 (157)
T 3hzh_A          114 VIMISA  119 (157)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            988774

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=94.21  E-value=0.13  Score=34.21  Aligned_cols=81  Identities=9%  Similarity=0.033  Sum_probs=45.9

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh--CCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL--GPTV   98 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~--~~~~   98 (163)
                      +++++|+|+|........+...|+ .|+.+..........+.+....+|.||+--..  +. +.-.+.+.+++.  ..+.
T Consensus         2 ~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~~   78 (133)
T 3nhm_A            2 SLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DGMDGYALCGHFRSEPTLKHI   78 (133)
T ss_dssp             ---CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSSCHHHHHHHHHHSTTTTTC
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhCCccCCC
Confidence            456789999976555666777777 78877655321111223334579988883221  11 222345556663  3478


Q ss_pred             CEEEEeh
Q 031223           99 PLFGVCM  105 (163)
Q Consensus        99 PvLGIC~  105 (163)
                      |++-+.-
T Consensus        79 pii~~s~   85 (133)
T 3nhm_A           79 PVIFVSG   85 (133)
T ss_dssp             CEEEEES
T ss_pred             CEEEEeC
Confidence            9988763

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=94.15  E-value=0.11  Score=33.37  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC--CCCCEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFG  102 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~--~~~PvLG  102 (163)
                      ++|+|+|........+.+.|+..|+.+............+....+|.+|+--... ..+...+.+.+++..  ...|++.
T Consensus         2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~~~~~~~~l~~~~~~~~~~ii~   80 (119)
T 2j48_A            2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQSCLLLLQHLREHQADPHPPLVL   80 (119)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhccccCCCCEEE
Confidence            5799998765567778889999999876553210011222334799888743211 112223455566543  6789887


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus        81 ~~~   83 (119)
T 2j48_A           81 FLG   83 (119)
T ss_dssp             EES
T ss_pred             EeC
Confidence            653

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=94.07  E-value=0.12  Score=35.57  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=48.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      +++|+|||........+.+.|...|+.+............+....+|.+|+--.... .+...+.+.+++.....|++-+
T Consensus         3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~l   81 (155)
T 1qkk_A            3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILV   81 (155)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEE
Confidence            468999997655677788899989998765432100011122346898887432111 1222345566665567999988


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      .-
T Consensus        82 s~   83 (155)
T 1qkk_A           82 TG   83 (155)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.04  E-value=0.14  Score=34.56  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=47.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      +..+|+|+|........+.+.|...|+.+..........+.+....+|.+|+-=.  .+... -.+.+.+++.....|++
T Consensus         3 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii   80 (137)
T 3cfy_A            3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVI   80 (137)
T ss_dssp             CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEE
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3458999998777777788888888887654422100122233347998887321  11112 23455566544568887


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        81 ~ls   83 (137)
T 3cfy_A           81 IAT   83 (137)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=94.04  E-value=0.18  Score=34.06  Aligned_cols=81  Identities=15%  Similarity=0.281  Sum_probs=47.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (163)
                      .+++|+|||....+...+.+.|.+.|+.+............+.. ..+|.||+--....-.+.-.+.+.+++. .+.|++
T Consensus         4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii   82 (140)
T 3h5i_A            4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPVV   82 (140)
T ss_dssp             --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEE
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEE
Confidence            34689999976556777889999999887655321111223333 4789888732210001122345555654 568988


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        83 ~ls   85 (140)
T 3h5i_A           83 FLT   85 (140)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=93.92  E-value=0.025  Score=38.27  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=46.1

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHH----hccCCCEEEeCCCCCCCC--CC-hhHHHHHH
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ--DS-GISLQTVL   92 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~----~~~~~dgvvl~GG~~~~~--d~-~~~~~~i~   92 (163)
                      +++..++|+|+|........+.+.|+..|+.+.....    .++.    ....+|.||+-=.  .+.  .. -.+.+.++
T Consensus         2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~----~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~   75 (136)
T 3kto_A            2 SLNHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS----AESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLV   75 (136)
T ss_dssp             -----CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS----HHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHH
T ss_pred             CCCCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC----HHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHH
Confidence            3455678999997655666788889888988765432    2222    2236887777211  111  11 13455555


Q ss_pred             HhCCCCCEEEEeh
Q 031223           93 ELGPTVPLFGVCM  105 (163)
Q Consensus        93 ~~~~~~PvLGIC~  105 (163)
                      +.....|++-+.-
T Consensus        76 ~~~~~~~ii~~s~   88 (136)
T 3kto_A           76 KRGFHLPTIVMAS   88 (136)
T ss_dssp             HTTCCCCEEEEES
T ss_pred             hCCCCCCEEEEEc
Confidence            5456789987764

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=93.90  E-value=0.079  Score=35.77  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=49.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCC-C-CChhHHHHHHH--hCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-Q-DSGISLQTVLE--LGP   96 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~-~-d~~~~~~~i~~--~~~   96 (163)
                      +.++|+|||........+.+.|++ .|+++..........+.+.. ..+|.||+-=.  .+ . +.-.+.+.+++  ...
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~   80 (140)
T 3lua_A            3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTA   80 (140)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGT
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccC
Confidence            457899999765566778888988 89987755321001122334 57998887221  11 1 11134556666  456


Q ss_pred             CCCEEEEeh
Q 031223           97 TVPLFGVCM  105 (163)
Q Consensus        97 ~~PvLGIC~  105 (163)
                      ..|++-+.-
T Consensus        81 ~~~ii~ls~   89 (140)
T 3lua_A           81 NTPVIIATK   89 (140)
T ss_dssp             TCCEEEEES
T ss_pred             CCCEEEEeC
Confidence            799998874

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=93.89  E-value=0.04  Score=36.79  Aligned_cols=55  Identities=15%  Similarity=0.166  Sum_probs=33.8

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl   74 (163)
                      ++..+++|+|||........+.+.|++.|+.+..........+.+....+|.||+
T Consensus         2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~   56 (132)
T 3lte_A            2 SLKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL   56 (132)
T ss_dssp             -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred             CCCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence            4456689999997655667788899999998765532111122233457998887

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=93.88  E-value=0.23  Score=32.93  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=48.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ++|+|+|....+...+.+.|.+.|+.+. ...........+....||.||+--..  +. +.-.+.+.+++...+.|++-
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l--~~~~g~~~~~~l~~~~~~~~ii~   79 (134)
T 3f6c_A            2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDI--PGVNGIQVLETLRKRQYSGIIII   79 (134)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTC--SSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCC--CCCChHHHHHHHHhcCCCCeEEE
Confidence            5799999765567778889999997665 33322112333444579988873221  11 22234556666556789887


Q ss_pred             EehHH
Q 031223          103 VCMGL  107 (163)
Q Consensus       103 IC~G~  107 (163)
                      ++--.
T Consensus        80 ~s~~~   84 (134)
T 3f6c_A           80 VSAKN   84 (134)
T ss_dssp             EECC-
T ss_pred             EeCCC
Confidence            77543

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=93.88  E-value=0.078  Score=38.47  Aligned_cols=88  Identities=19%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             CCCCeEEEE---------ECCCChHHHHHHHHHHcCCEEE---EEeCCCCCH-HHHhc---cCCCEEEeCCCCCCCCCCh
Q 031223           22 NNKNPIIVI---------DNYDSFTYNLCQYMGELGYHFE---VYRNDELTV-EELKR---KNPRGVLISPGPGAPQDSG   85 (163)
Q Consensus        22 ~~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~---v~~~~~~~~-~~~~~---~~~dgvvl~GG~~~~~d~~   85 (163)
                      +..+++.||         +-.|++...+..+|++.|+++.   +++ |+... +.+..   .++|.||.+||.+ +.+.+
T Consensus         5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~-Dd~~i~~al~~a~~~~~DlVittGG~s-~g~~D   82 (164)
T 3pzy_A            5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA-DGSPVGEALRKAIDDDVDVILTSGGTG-IAPTD   82 (164)
T ss_dssp             --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC-SSHHHHHHHHHHHHTTCSEEEEESCCS-SSTTC
T ss_pred             CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC-CHHHHHHHHHHHHhCCCCEEEECCCCC-CCCCc
Confidence            445788888         2346677789999999998765   343 32111 12221   2799999999954 44444


Q ss_pred             hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCe
Q 031223           86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGK  117 (163)
Q Consensus        86 ~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~  117 (163)
                      ...+.++++ ++..|      |+..+.+..+-+
T Consensus        83 ~t~eal~~~~~~~lp------G~~~~~~~~~~~  109 (164)
T 3pzy_A           83 STPDQTVAVVDYLIP------GLAEAIRRSGLP  109 (164)
T ss_dssp             CHHHHHHTTCSEECH------HHHHHHHHTTTT
T ss_pred             cHHHHHHHHhcccCc------cHHHHHHhhccC
Confidence            455666664 54444      544444444433

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=93.79  E-value=0.14  Score=34.26  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEE-EeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v-~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      ...++|+|||........+.+.|+..|+.+.. ..........+....+|.+|+--....-.+.-.+.+.+++. ...|+
T Consensus         7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~i   85 (140)
T 3cg0_A            7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPI   85 (140)
T ss_dssp             -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCE
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCE
Confidence            34578999987655667788889888998763 43211112222334799888832210001122345555555 67999


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-++-
T Consensus        86 i~ls~   90 (140)
T 3cg0_A           86 IFITS   90 (140)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88764

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=93.76  E-value=0.18  Score=33.59  Aligned_cols=81  Identities=15%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL  101 (163)
                      |+.+|+|+|....+...+...|...|+.+............+....+|.+++--.  .+. +.-.+.+.+++.....|++
T Consensus         2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (136)
T 1mvo_A            2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL   79 (136)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEE
Confidence            4568999997655666788888888988654432100112222347898887322  111 1123455566544568988


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        80 ~~s~   83 (136)
T 1mvo_A           80 MLTA   83 (136)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7764

>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}

Probab=93.67  E-value=1.2  Score=34.96  Aligned_cols=81  Identities=11%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             CCCeEEEEEC--CCChH---HHHHHHHHHcC-CEEEEEeCCC-----CCH-HHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           23 NKNPIIVIDN--YDSFT---YNLCQYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        23 ~~~~Ilvid~--~~~~~---~~~~~~l~~~G-~~~~v~~~~~-----~~~-~~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      ...|||||.-  +..+.   ..+.+.|++.| +++++.....     ..+ +.+  .+||.||+.-. +... .+...+.
T Consensus         3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~~-~~~l-~~~~~~~   78 (281)
T 4e5v_A            3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDYN-GDSW-PEETNRR   78 (281)
T ss_dssp             CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECCC-SSCC-CHHHHHH
T ss_pred             CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeCC-CCcC-CHHHHHH
Confidence            3578999943  22232   35777888888 8888875310     111 122  37999997442 2222 2334445


Q ss_pred             HHH-hCCCCCEEEEehHH
Q 031223           91 VLE-LGPTVPLFGVCMGL  107 (163)
Q Consensus        91 i~~-~~~~~PvLGIC~G~  107 (163)
                      +.+ +.++.+++|+..+.
T Consensus        79 l~~yV~~Ggglv~~H~a~   96 (281)
T 4e5v_A           79 FLEYVQNGGGVVIYHAAD   96 (281)
T ss_dssp             HHHHHHTTCEEEEEGGGG
T ss_pred             HHHHHHcCCCEEEEeccc
Confidence            555 57899999998654

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=93.57  E-value=0.15  Score=35.47  Aligned_cols=81  Identities=17%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~   97 (163)
                      +.++||+|||-.......+.+.|++.|+.......+.. ..+.+....||.|++ -= ..|.-.+ ++.+.||+.  .++
T Consensus        10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill-D~-~MP~mdG~el~~~ir~~~~~~~   87 (134)
T 3to5_A           10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT-DW-NMPGMQGIDLLKNIRADEELKH   87 (134)
T ss_dssp             CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE-cC-CCCCCCHHHHHHHHHhCCCCCC
Confidence            34578999987555666788899999986433322211 122233347998886 21 1232222 456667763  367


Q ss_pred             CCEEEEe
Q 031223           98 VPLFGVC  104 (163)
Q Consensus        98 ~PvLGIC  104 (163)
                      +||+-+-
T Consensus        88 ipvI~lT   94 (134)
T 3to5_A           88 LPVLMIT   94 (134)
T ss_dssp             CCEEEEE
T ss_pred             CeEEEEE
Confidence            9998775

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=93.48  E-value=0.28  Score=32.33  Aligned_cols=80  Identities=15%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL  100 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~Pv  100 (163)
                      ..+|+|+|........+...|+..|+++..........+.+....||.+++-=.  .+...+ .+.+.+++.  ..+.|+
T Consensus         2 ~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~~g~~~~~~l~~~~~~~~~pi   79 (122)
T 3gl9_A            2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVMDGFTVLKKLQEKEEWKRIPV   79 (122)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSSCHHHHHHHHHTSTTTTTSCE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCCcHHHHHHHHHhcccccCCCE
Confidence            358999987555666788888889998765432111122333457998887221  122222 344555543  257899


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        80 i~~s~   84 (122)
T 3gl9_A           80 IVLTA   84 (122)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            88773

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=93.47  E-value=0.14  Score=34.62  Aligned_cols=81  Identities=9%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHH--hCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE--LGPT   97 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~--~~~~   97 (163)
                      ..++|+|||........+.+.|++.|....+......  ..+.+....+|.||+--.  .+. +.-.+.+.+++  ...+
T Consensus         4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~   81 (144)
T 3kht_A            4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH   81 (144)
T ss_dssp             -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence            3468999997655667788899999987544433211  122233457998887322  111 11234555665  3467


Q ss_pred             CCEEEEeh
Q 031223           98 VPLFGVCM  105 (163)
Q Consensus        98 ~PvLGIC~  105 (163)
                      .|++-+.-
T Consensus        82 ~pii~~s~   89 (144)
T 3kht_A           82 TPIVILTD   89 (144)
T ss_dssp             CCEEEEET
T ss_pred             CCEEEEeC
Confidence            89998874

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=93.32  E-value=0.22  Score=33.21  Aligned_cols=79  Identities=15%  Similarity=0.143  Sum_probs=46.6

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      .++|+|+|....+...+...|+..|+.+............+....+|.+|+-=.  .+... -.+.+.+++.....|++-
T Consensus         3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~   80 (132)
T 3crn_A            3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIK--LPDMEGTELLEKAHKLRPGMKKIM   80 (132)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCchHHHHHHHHhhCCCCcEEE
Confidence            468999997655666788888888988764432101122233347898887321  11212 234555665556789887


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        81 ~s   82 (132)
T 3crn_A           81 VT   82 (132)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=93.31  E-value=0.12  Score=34.65  Aligned_cols=82  Identities=7%  Similarity=-0.063  Sum_probs=48.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ..++|+|||........+.+.|++.|+.+..........+.+....+|.||+--... ..+.-.+.+.+++.....|++-
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~   84 (137)
T 3hdg_A            6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMP-KLGGLEMLDRIKAGGAKPYVIV   84 (137)
T ss_dssp             -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCCCEEEE
T ss_pred             cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCcEEE
Confidence            346899999865566778888888887776654211112223334799888843211 1112234555666556788887


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus        85 ~s~   87 (137)
T 3hdg_A           85 ISA   87 (137)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            764

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=93.26  E-value=0.35  Score=31.68  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=45.4

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|+|+|........+.+.|+..|+++..........+.+....||.+++-=.  .+...+ .+.+.+++ ....|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~~g~~~~~~lr~-~~~~~ii~   78 (120)
T 3f6p_A            2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNKDGVEVCREVRK-KYDMPIIM   78 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTTHHHHHHHHHHT-TCCSCEEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence            458999987555666788888889998765432101122233457998887221  111111 23444444 24689887


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus        79 ~t~   81 (120)
T 3f6p_A           79 LTA   81 (120)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            763

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=93.25  E-value=0.32  Score=31.98  Aligned_cols=81  Identities=10%  Similarity=0.116  Sum_probs=46.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL  101 (163)
                      .+.+|+|+|........+...|...|+.+............+....+|.+++-=.  .+. +.-.+.+.+++.....|++
T Consensus         2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ii   79 (126)
T 1dbw_A            2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDMSGVELLRNLGDLKINIPSI   79 (126)
T ss_dssp             CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            3468999998655666788888888987765432100112223346887776211  111 1123455566655678988


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        80 ~~s~   83 (126)
T 1dbw_A           80 VITG   83 (126)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7753

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=93.22  E-value=0.18  Score=34.55  Aligned_cols=84  Identities=8%  Similarity=0.093  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCCCCCChhHHHHHHHhCCCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLELGPTVP   99 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~P   99 (163)
                      |++.++|+|||........+.+.|+. |+.+..........+.+...+ ||.||+--... ..+.-.+.+.+++.....|
T Consensus         1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~   78 (151)
T 3kcn_A            1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMP-GMEGTEVIQKARLISPNSV   78 (151)
T ss_dssp             --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCS-SSCHHHHHHHHHHHCSSCE
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCcE
Confidence            34567899999765556667777765 887765532111122232334 59888732211 1122234556666556789


Q ss_pred             EEEEehH
Q 031223          100 LFGVCMG  106 (163)
Q Consensus       100 vLGIC~G  106 (163)
                      ++-+.-.
T Consensus        79 ii~~s~~   85 (151)
T 3kcn_A           79 YLMLTGN   85 (151)
T ss_dssp             EEEEECG
T ss_pred             EEEEECC
Confidence            8877643

>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1

Probab=93.06  E-value=0.17  Score=33.92  Aligned_cols=84  Identities=10%  Similarity=-0.003  Sum_probs=46.5

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTV   98 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~   98 (163)
                      ..+...+|+|+|....+...+.+.|...|+.+............+.. ..+|.+|+--... ..+.-.+.+.+++.....
T Consensus        11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~-~~~g~~~~~~l~~~~~~~   89 (138)
T 2b4a_A           11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLV-DLSIFSLLDIVKEQTKQP   89 (138)
T ss_dssp             ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCT-TSCHHHHHHHHTTSSSCC
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCC
Confidence            34456789999976556777888898889877654321011222334 4799888732211 011112334444433568


Q ss_pred             CEEEEe
Q 031223           99 PLFGVC  104 (163)
Q Consensus        99 PvLGIC  104 (163)
                      |++-+.
T Consensus        90 ~ii~ls   95 (138)
T 2b4a_A           90 SVLILT   95 (138)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            888776

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=93.05  E-value=0.35  Score=35.40  Aligned_cols=86  Identities=19%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             CeEEEEE---------CCCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhH
Q 031223           25 NPIIVID---------NYDSFTYNLCQYMGELGYHFEVYR--NDELTVEELK----R--KNPRGVLISPGPGAPQDSGIS   87 (163)
Q Consensus        25 ~~Ilvid---------~~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~   87 (163)
                      +++.||-         -.+++...+.++|++.|+++..+.  .|  +.+.+.    .  .++|.||.+||.+ +...+..
T Consensus         4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~DlVittGG~g-~~~~D~T   80 (172)
T 3kbq_A            4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALEVSDLVVSSGGLG-PTFDDMT   80 (172)
T ss_dssp             CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHHCSEEEEESCCS-SSTTCCH
T ss_pred             CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCEEEEcCCCc-CCcccch
Confidence            5677772         234566679999999999876432  23  223321    1  2599999999955 4444444


Q ss_pred             HHHHHH-hCCCCCEEEEehHHHHHHHHhC
Q 031223           88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        88 ~~~i~~-~~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      .+.+.+ ++  +++..-=--.+.|-..|+
T Consensus        81 ~ea~a~~~~--~~l~~~~e~~~~i~~~~~  107 (172)
T 3kbq_A           81 VEGFAKCIG--QDLRIDEDALAMIKKKYG  107 (172)
T ss_dssp             HHHHHHHHT--CCCEECHHHHHHHHHHHC
T ss_pred             HHHHHHHcC--CCeeeCHHHHHHHHHHHc
Confidence            555555 45  455554455666666666

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=93.02  E-value=0.17  Score=36.22  Aligned_cols=82  Identities=12%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~Pv  100 (163)
                      +..++|+|||........+.+.|...|+.+..........+.+....||.||+-=.  .+. +.-++.+.+++.....|+
T Consensus         5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~i   82 (184)
T 3rqi_A            5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGNDSGLSLIAPLCDLQPDARI   82 (184)
T ss_dssp             --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTEESHHHHHHHHHHCTTCEE
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCccHHHHHHHHHhcCCCCCE
Confidence            45578999997655666788889989988755432111122333457998887211  111 112345566665567898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        83 i~lt~   87 (184)
T 3rqi_A           83 LVLTG   87 (184)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            87653

>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A

Probab=93.00  E-value=0.18  Score=39.96  Aligned_cols=76  Identities=16%  Similarity=0.289  Sum_probs=44.5

Q ss_pred             CeEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCCC-----------------HHH-----HhccCCCEEEeCCC
Q 031223           25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-----------------VEE-----LKRKNPRGVLISPG   77 (163)
Q Consensus        25 ~~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~~-----------------~~~-----~~~~~~dgvvl~GG   77 (163)
                      ++|+||-|..+     ....+.++|++.|+++.+.......                 ...     ....++|.||..||
T Consensus         5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG   84 (307)
T 1u0t_A            5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG   84 (307)
T ss_dssp             CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence            46888866433     2445888999999988765432110                 110     11236899999899


Q ss_pred             CCCCCCChhHHHHHHHh-CCCCCEEEEehH
Q 031223           78 PGAPQDSGISLQTVLEL-GPTVPLFGVCMG  106 (163)
Q Consensus        78 ~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G  106 (163)
                      -+      .+...++.+ ..++|++||=.|
T Consensus        85 DG------T~l~a~~~~~~~~~pvlgi~~G  108 (307)
T 1u0t_A           85 DG------TFLRAAELARNASIPVLGVNLG  108 (307)
T ss_dssp             HH------HHHHHHHHHHHHTCCEEEEECS
T ss_pred             CH------HHHHHHHHhccCCCCEEEEeCC
Confidence            43      345555553 346899999766

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=92.94  E-value=0.16  Score=33.98  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~Pv  100 (163)
                      ...+|+|+|....+...+.+.|++.|+++............+.... +|.||+--.. ...+.-.+.+.+++. ....|+
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~~i   84 (136)
T 3hdv_A            6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASERAALSI   84 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTSTTTTCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcCCCCCCE
Confidence            3478999997655677788899999988766532110112222234 8888873221 111112344555554 366888


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        85 i~~s~   89 (136)
T 3hdv_A           85 IVVSG   89 (136)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            88774

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=92.91  E-value=0.2  Score=36.26  Aligned_cols=82  Identities=13%  Similarity=0.195  Sum_probs=47.6

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (163)
                      +...+|+|+|........+...|...|+.+..........+.+....+|.+|+-=.  .+... -++.+.+++...+.|+
T Consensus         2 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~l~~~~~~~~i   79 (208)
T 1yio_A            2 TAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPI   79 (208)
T ss_dssp             -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCE
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCE
Confidence            45678999997655667788888888988765432100011122346887776211  12212 2345566665567899


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        80 i~ls~   84 (208)
T 1yio_A           80 VFITA   84 (208)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            88763

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=92.87  E-value=0.32  Score=32.17  Aligned_cols=81  Identities=10%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc-------cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~-------~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      +++|+|+|........+.+.|+..|+  .+............+..       ..+|.+|+--... ..+.-.+.+.+++.
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~   80 (140)
T 1k68_A            2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAEIKSD   80 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHHHHHS
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHHHHcC
Confidence            46899999765567778899999988  55544321111222332       4699888843211 11222345556653


Q ss_pred             C--CCCCEEEEeh
Q 031223           95 G--PTVPLFGVCM  105 (163)
Q Consensus        95 ~--~~~PvLGIC~  105 (163)
                      .  ...|++-+.-
T Consensus        81 ~~~~~~pii~ls~   93 (140)
T 1k68_A           81 PTLKRIPVVVLST   93 (140)
T ss_dssp             TTGGGSCEEEEES
T ss_pred             cccccccEEEEec
Confidence            3  5789998864

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=92.77  E-value=0.28  Score=33.54  Aligned_cols=81  Identities=10%  Similarity=0.081  Sum_probs=47.2

Q ss_pred             CCeEEEEECCCChHHHHHHHHHH-cCCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~-~G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvL  101 (163)
                      .++|+|||....+...+.+.|.. .|+.+.....+.. ....+....+|.||+--... ..+.-.+.+.+++.....|++
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii   83 (153)
T 3cz5_A            5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAARIL   83 (153)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCCEE
T ss_pred             ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCeEE
Confidence            36899999765566678888887 6777652222210 12223334799888732211 112223456666655678998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        84 ~ls~   87 (153)
T 3cz5_A           84 IFTM   87 (153)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8764

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=92.77  E-value=0.25  Score=33.71  Aligned_cols=83  Identities=8%  Similarity=0.025  Sum_probs=46.9

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      ..++|+|||....+...+.+.|...|....+......  ..+.+....+|.||+--.. ...+.-.+.+.+++...+.|+
T Consensus        19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~i   97 (150)
T 4e7p_A           19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLETKV   97 (150)
T ss_dssp             -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCSCEE
T ss_pred             CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeE
Confidence            3468999997655666788888887744433332211  1222334579988873221 111222345556665567898


Q ss_pred             EEEehH
Q 031223          101 FGVCMG  106 (163)
Q Consensus       101 LGIC~G  106 (163)
                      +-+.-.
T Consensus        98 i~ls~~  103 (150)
T 4e7p_A           98 VVVTTF  103 (150)
T ss_dssp             EEEESC
T ss_pred             EEEeCC
Confidence            887743

>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1

Probab=92.76  E-value=0.32  Score=35.13  Aligned_cols=84  Identities=12%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             CCCeEEEE---------ECCCChHHHHHHH----HHHcCCEEEEEe--CCCCCHHHH----hc--c-CCCEEEeCCCCCC
Q 031223           23 NKNPIIVI---------DNYDSFTYNLCQY----MGELGYHFEVYR--NDELTVEEL----KR--K-NPRGVLISPGPGA   80 (163)
Q Consensus        23 ~~~~Ilvi---------d~~~~~~~~~~~~----l~~~G~~~~v~~--~~~~~~~~~----~~--~-~~dgvvl~GG~~~   80 (163)
                      |.+++.||         +-.+++...+.++    |++.|+++..+.  +|+  .+.+    ..  . ++|.||.+||.+ 
T Consensus         4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd--~~~I~~~l~~a~~~~~DlVittGG~g-   80 (167)
T 2g2c_A            4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG--YDTVVEAIATALKQGARFIITAGGTG-   80 (167)
T ss_dssp             CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS--HHHHHHHHHHHHHTTCSEEEEESCCS-
T ss_pred             CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC-
Confidence            44677777         3346677789999    999998765332  232  2332    11  2 499999999954 


Q ss_pred             CCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223           81 PQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        81 ~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      +...+...+.+.++ +...|      |++.+.+..+
T Consensus        81 ~~~~D~t~ea~~~~~~~~l~------g~~~~~~~~~  110 (167)
T 2g2c_A           81 IRAKNQTPEATASFIHTRCE------GLEQQILIHG  110 (167)
T ss_dssp             SSTTCCHHHHHHTTCSEECH------HHHHHHHHHC
T ss_pred             CCCCcChHHHHHHHhCCcCc------cHHHHHHHhc
Confidence            34333345556553 43333      5555544444

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=92.64  E-value=0.2  Score=34.25  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=44.8

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHc-CCE-EEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL  100 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~-~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~Pv  100 (163)
                      .++|+|||........+.+.|++. |+. +............+.. ..+|.+|+--.. ...+.-.+.+.+++.....|+
T Consensus         3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i   81 (154)
T 2qsj_A            3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFDPSNAV   81 (154)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred             ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhCCCCeE
Confidence            468999997655667788888887 773 4333221011222334 569988873321 111222345556665567899


Q ss_pred             EEEehH
Q 031223          101 FGVCMG  106 (163)
Q Consensus       101 LGIC~G  106 (163)
                      +-++--
T Consensus        82 i~ls~~   87 (154)
T 2qsj_A           82 ALISGE   87 (154)
T ss_dssp             EEC---
T ss_pred             EEEeCC
Confidence            887644

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=92.63  E-value=0.36  Score=32.41  Aligned_cols=81  Identities=14%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVP   99 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~P   99 (163)
                      ...+|+|+|........+.+.|+..|+.+..........+.+....+|.|++-=.  .+... -.+.+.+++.  ....|
T Consensus         3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~~g~~~~~~lr~~~~~~~~p   80 (136)
T 3t6k_A            3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGIDGYTLCKRVRQHPLTKTLP   80 (136)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSGGGTTCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHcCCCcCCcc
Confidence            3468999997655666788889889988765432111122233357998887211  12222 2345566652  45789


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-+.-
T Consensus        81 ii~~t~   86 (136)
T 3t6k_A           81 ILMLTA   86 (136)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            987764

>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}

Probab=92.61  E-value=0.37  Score=37.61  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             CeEEEEECCC-----ChHHHHHHHHHHcCCEEEEEeCCC----------CCHHHHhccCCCEEEeCCCCCCCCCChhHHH
Q 031223           25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQ   89 (163)
Q Consensus        25 ~~Ilvid~~~-----~~~~~~~~~l~~~G~~~~v~~~~~----------~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~   89 (163)
                      ++|++|-|..     .....+.++|++.|+++.+.....          ...+.. ..++|.||..||-+      .+.+
T Consensus         6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~GGDG------T~l~   78 (292)
T 2an1_A            6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEI-GQQADLAVVVGGDG------NMLG   78 (292)
T ss_dssp             CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHH-HHHCSEEEECSCHH------HHHH
T ss_pred             cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhc-ccCCCEEEEEcCcH------HHHH
Confidence            4688885532     134558889999999887653210          011122 23689999999943      3566


Q ss_pred             HHHHh-CCCCCEEEEehH
Q 031223           90 TVLEL-GPTVPLFGVCMG  106 (163)
Q Consensus        90 ~i~~~-~~~~PvLGIC~G  106 (163)
                      .++.+ ..++|+|||=.|
T Consensus        79 a~~~~~~~~~P~lGI~~G   96 (292)
T 2an1_A           79 AARTLARYDINVIGINRG   96 (292)
T ss_dssp             HHHHHTTSSCEEEEBCSS
T ss_pred             HHHHhhcCCCCEEEEECC
Confidence            66665 457999999655

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=92.59  E-value=0.48  Score=30.62  Aligned_cols=79  Identities=10%  Similarity=0.150  Sum_probs=46.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      ++|+|+|........+.+.|...|+.+............+....+|.+++--.  .+... -.+.+.+++.....|++-+
T Consensus         1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   78 (121)
T 2pl1_A            1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence            47999987555666788888888987665432111122233347898887322  12212 2344555554456898877


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      .-
T Consensus        79 s~   80 (121)
T 2pl1_A           79 TA   80 (121)
T ss_dssp             ES
T ss_pred             ec
Confidence            53

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=92.56  E-value=0.32  Score=35.52  Aligned_cols=80  Identities=11%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      .++|+|+|........+.+.|...|+.+............+....||.+|+--..  +... -.+.+.+++.....|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l--~~~~g~~~~~~lr~~~~~~~ii~   79 (225)
T 1kgs_A            2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWEILKSMRESGVNTPVLM   79 (225)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCCCCEEE
Confidence            4689999976556667888888889887644321001122233479988873221  1112 234555665456789988


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus        80 ls~   82 (225)
T 1kgs_A           80 LTA   82 (225)
T ss_dssp             EES
T ss_pred             EeC
Confidence            864

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=92.49  E-value=0.24  Score=33.87  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHh---------ccCCCEEEeCCCCCCCCCC-hhHHH
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDS-GISLQ   89 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~---------~~~~dgvvl~GG~~~~~d~-~~~~~   89 (163)
                      +++++|+|||........+.+.|++.|+  .+..........+.+.         ...+|.||+-=.  .+... -.+.+
T Consensus         2 ~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~   79 (152)
T 3heb_A            2 SLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILK   79 (152)
T ss_dssp             ---CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHH
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHH
Confidence            4567899999765566778889999998  4544432111122221         246888887221  11112 23456


Q ss_pred             HHHH--hCCCCCEEEEeh
Q 031223           90 TVLE--LGPTVPLFGVCM  105 (163)
Q Consensus        90 ~i~~--~~~~~PvLGIC~  105 (163)
                      .+++  ...+.|++-+.-
T Consensus        80 ~lr~~~~~~~~pii~~t~   97 (152)
T 3heb_A           80 LVKENPHTRRSPVVILTT   97 (152)
T ss_dssp             HHHHSTTTTTSCEEEEES
T ss_pred             HHHhcccccCCCEEEEec
Confidence            6666  346789987764

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A

Probab=92.49  E-value=0.52  Score=34.86  Aligned_cols=68  Identities=13%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             CCCeEEEE---------ECCCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h---ccCCCEEEeCCCCCCCCCC
Q 031223           23 NKNPIIVI---------DNYDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RKNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        23 ~~~~Ilvi---------d~~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~---~~~~dgvvl~GG~~~~~d~   84 (163)
                      ..+|+.||         + .|++...+..+|++.|+++..+.  +|+  .+.+    .   ..++|.||.+||.+ +.+.
T Consensus        29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~DlVIttGGts-~g~~  104 (185)
T 3rfq_A           29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEAD--EVDIRNALNTAVIGGVDLVVSVGGTG-VTPR  104 (185)
T ss_dssp             CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSC--HHHHHHHHHHHHHTTCSEEEEESCCS-SSTT
T ss_pred             CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhCCCCEEEECCCCC-CCCc
Confidence            44678888         4 57777889999999998876432  232  2222    1   13799999999954 4444


Q ss_pred             hhHHHHHHHh
Q 031223           85 GISLQTVLEL   94 (163)
Q Consensus        85 ~~~~~~i~~~   94 (163)
                      +...+.++++
T Consensus       105 D~t~eal~~l  114 (185)
T 3rfq_A          105 DVTPESTREI  114 (185)
T ss_dssp             CCHHHHHHTT
T ss_pred             ccHHHHHHHH
Confidence            4445555553

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=92.47  E-value=0.32  Score=36.52  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP   99 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~P   99 (163)
                      .+..++|+|||........+...|+..|+++..........+.+....||.||+-=.  .+... -++.+.+++.....|
T Consensus        20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~   97 (250)
T 3r0j_A           20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGMDGFGVLRRLRADGIDAP   97 (250)
T ss_dssp             CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCC
T ss_pred             CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence            344578999997655666788889889988765432101122233347998887221  12212 234555666555789


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-+.-
T Consensus        98 ii~lt~  103 (250)
T 3r0j_A           98 ALFLTA  103 (250)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            988765

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=92.42  E-value=0.5  Score=30.35  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLGI  103 (163)
                      ++|+|+|....+...+.+.|...|+.+..........+.+....+|.+++-=.  .+. +.-.+.+.+++.....|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~   79 (116)
T 3a10_A            2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL   79 (116)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred             cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence            37999997655666788889888988765432111122233347898887322  111 222345566665566888776


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      .
T Consensus        80 s   80 (116)
T 3a10_A           80 T   80 (116)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=92.41  E-value=0.27  Score=31.92  Aligned_cols=80  Identities=14%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL  101 (163)
                      +++|+|+|........+.+.|+..|+++.....+. .....+....+|.+++-=..  +. +.-.+.+.+++.....|++
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l--~~~~g~~~~~~l~~~~~~~~ii   79 (120)
T 1tmy_A            2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM--PEMNGIDAIKEIMKIDPNAKII   79 (120)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC--GGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCC--CCCcHHHHHHHHHhhCCCCeEE
Confidence            46899999765566678888888898753222221 01222223478988873221  11 1123455566555678988


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        80 ~~s~   83 (120)
T 1tmy_A           80 VCSA   83 (120)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            7753

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=92.36  E-value=0.15  Score=34.28  Aligned_cols=82  Identities=10%  Similarity=0.152  Sum_probs=46.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc------cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~------~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      ..++|+|||........+.+.|++.|.  .+............+..      ..+|.||+--.... .+.-.+.+.+++.
T Consensus         6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~~~   84 (143)
T 2qvg_A            6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELRDD   84 (143)
T ss_dssp             -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHTTS
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHHcC
Confidence            447899999765567778889998887  66555321111222332      46898887322110 1111234444443


Q ss_pred             C--CCCCEEEEeh
Q 031223           95 G--PTVPLFGVCM  105 (163)
Q Consensus        95 ~--~~~PvLGIC~  105 (163)
                      .  ...|++-++-
T Consensus        85 ~~~~~~~ii~ls~   97 (143)
T 2qvg_A           85 SSFTDIEVFVLTA   97 (143)
T ss_dssp             GGGTTCEEEEEES
T ss_pred             ccccCCcEEEEeC
Confidence            2  5789888764

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=92.22  E-value=0.37  Score=35.38  Aligned_cols=80  Identities=11%  Similarity=0.222  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvL  101 (163)
                      ..++|+|+|....+...+.+.|...|+.+............+....||.+|+--.  .+. +.-.+.+.+++...+.|++
T Consensus         6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii   83 (233)
T 1ys7_A            6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC   83 (233)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence            4478999997655667788889888987764432100122233347998887322  111 1123455566545678988


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        84 ~lt   86 (233)
T 1ys7_A           84 VLS   86 (233)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=92.09  E-value=0.28  Score=32.95  Aligned_cols=83  Identities=14%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc----------cCCCEEEeCCCCCCCCCChhHHH
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDSGISLQ   89 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~----------~~~dgvvl~GG~~~~~d~~~~~~   89 (163)
                      +++++|+|+|........+.+.|+..|+  .+..........+.+..          ..+|.+|+--... ..+.-.+.+
T Consensus         4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~~~~~   82 (149)
T 1k66_A            4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLP-GTDGREVLQ   82 (149)
T ss_dssp             CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCS-SSCHHHHHH
T ss_pred             CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCC-CCCHHHHHH
Confidence            4557899999765566778889999887  55544321111222332          4689888732211 111112344


Q ss_pred             HHHHhC--CCCCEEEEeh
Q 031223           90 TVLELG--PTVPLFGVCM  105 (163)
Q Consensus        90 ~i~~~~--~~~PvLGIC~  105 (163)
                      .+++..  ...|++-+.-
T Consensus        83 ~l~~~~~~~~~~ii~~t~  100 (149)
T 1k66_A           83 EIKQDEVLKKIPVVIMTT  100 (149)
T ss_dssp             HHTTSTTGGGSCEEEEES
T ss_pred             HHHhCcccCCCeEEEEeC
Confidence            444432  5689988764

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=92.08  E-value=0.47  Score=35.94  Aligned_cols=82  Identities=23%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      .+++|+|+|....+...+.+.|+..|+.+..........+.+....+|.|++-=. ....+.-.+.+.+++.....|++.
T Consensus       128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~-mp~~~G~~l~~~ir~~~~~~piI~  206 (254)
T 2ayx_A          128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN-MPNMDGYRLTQRIRQLGLTLPVIG  206 (254)
T ss_dssp             CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES-SCSSCCHHHHHHHHHHHCCSCEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCCCcEEE
Confidence            3478999997655666788889889998765543211122333447998886211 101122245566666545799998


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus       207 lt~  209 (254)
T 2ayx_A          207 VTA  209 (254)
T ss_dssp             EES
T ss_pred             EEC
Confidence            864

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=92.05  E-value=0.027  Score=40.66  Aligned_cols=78  Identities=14%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             CCeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCCCCHHH---------------HhccCCCEEEeCCCCCCCC---
Q 031223           24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDELTVEE---------------LKRKNPRGVLISPGPGAPQ---   82 (163)
Q Consensus        24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~---------------~~~~~~dgvvl~GG~~~~~---   82 (163)
                      ..+|+.+-.-+-   |...+...+|+  -+...+|..+  .++               ....++|.|||.||-..|.   
T Consensus        26 ~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d--~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v  101 (157)
T 2r47_A           26 AERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTD--FSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGS  101 (157)
T ss_dssp             CSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTC--GGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSC
T ss_pred             CCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCC--hhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCC
Confidence            578999976543   34445556666  3555566421  111               1114789999999966654   


Q ss_pred             CChhHHHHHHHh-CCCCCEEEEeh
Q 031223           83 DSGISLQTVLEL-GPTVPLFGVCM  105 (163)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIC~  105 (163)
                      +.++..++|.++ ..+..+.|||+
T Consensus       102 ~~e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A          102 DIEDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhhcCCCCEEEEEh
Confidence            445677778875 44567999996

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=91.73  E-value=0.58  Score=30.36  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=44.6

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG  102 (163)
                      +.+|+|+|........+...|...|+.+..........+.+....+|.+++--.  .+. +.-.+.+.+++. ...|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~   79 (123)
T 1xhf_A            3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF   79 (123)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence            468999997655566778888888987654432100112223347898887322  111 212344555554 5688887


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        80 ~s   81 (123)
T 1xhf_A           80 LT   81 (123)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=91.54  E-value=1.2  Score=35.43  Aligned_cols=97  Identities=16%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             HhhHHhhhcCCCCCeEEEEECCCCh-------HHHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCC
Q 031223           12 SLYLDDKKSKNNKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPG   79 (163)
Q Consensus        12 ~~~~~~~~~~~~~~~Ilvid~~~~~-------~~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~   79 (163)
                      ++++-+...|++ ++++||-|-.+-       ...+.++|++.|+++.+...... ...+    ....++|.||+.||-+
T Consensus        13 ~~~~~~~~~m~m-~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDG   91 (337)
T 2qv7_A           13 SGLVPRGSHMMR-KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG   91 (337)
T ss_dssp             ------CCCSCC-EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH
T ss_pred             cCcccccccccc-ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCch
Confidence            455656555553 457777553221       23477888889998888764321 1212    2224789999999943


Q ss_pred             CCCCChhHHHHHHHh---CCCCCEEEEehHHH-HHHHHhC
Q 031223           80 APQDSGISLQTVLEL---GPTVPLFGVCMGLQ-CIGEAFG  115 (163)
Q Consensus        80 ~~~d~~~~~~~i~~~---~~~~PvLGIC~G~Q-lLa~a~G  115 (163)
                            .+.+.++.+   ..+.|+.+|=.|-- .+|+.+|
T Consensus        92 ------Tv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg  125 (337)
T 2qv7_A           92 ------TLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH  125 (337)
T ss_dssp             ------HHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred             ------HHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence                  344445544   45678887765532 3444444

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=91.39  E-value=0.45  Score=30.91  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|+|+|....+...+.+.|...|+.+............+....+|.+++-=.  .+... -.+.+.+++ ....|++-
T Consensus         2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~-~~~~~ii~   78 (122)
T 1zgz_A            2 PHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIIL   78 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEE
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCCChHHHHHHHHh-cCCCCEEE
Confidence            357999987655667788888888987765432100111222346898887221  11112 133445555 45678876


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        79 ~s   80 (122)
T 1zgz_A           79 VT   80 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=91.09  E-value=0.84  Score=33.79  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      .++|+|+|........+...|...|+.+..........+.+....+|.+|+-=..  +... -.+.+.+++. ...|++-
T Consensus         5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l--~~~~g~~~~~~lr~~-~~~~ii~   81 (238)
T 2gwr_A            5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGIDVCRVLRAD-SGVPIVM   81 (238)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHTT-CCCCEEE
T ss_pred             cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CCCCHHHHHHHHHhC-CCCcEEE
Confidence            4689999976556667888898889987655322111222333479988873221  1111 1234445543 3689887


Q ss_pred             Eeh
Q 031223          103 VCM  105 (163)
Q Consensus       103 IC~  105 (163)
                      +.-
T Consensus        82 lt~   84 (238)
T 2gwr_A           82 LTA   84 (238)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            753

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=91.08  E-value=0.24  Score=33.53  Aligned_cols=82  Identities=13%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcC-CEEEEEeCCCCCHHHHh-c-cCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELK-R-KNPRGVLISPGPGAPQDS-GISLQTVLELGPT   97 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G-~~~~v~~~~~~~~~~~~-~-~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~   97 (163)
                      ..+.+|+|||....+...+.+.|.+.| +.+............+. . ..+|.||+--..  +... -.+.+.+++....
T Consensus        18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~   95 (146)
T 4dad_A           18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAA--LDTAELAAIEKLSRLHPG   95 (146)
T ss_dssp             GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTT--CCHHHHHHHHHHHHHCTT
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC--CCccHHHHHHHHHHhCCC
Confidence            344789999976556777888999888 88776543210111222 2 579988873221  1111 1244555555567


Q ss_pred             CCEEEEeh
Q 031223           98 VPLFGVCM  105 (163)
Q Consensus        98 ~PvLGIC~  105 (163)
                      .|++-+.-
T Consensus        96 ~~ii~lt~  103 (146)
T 4dad_A           96 LTCLLVTT  103 (146)
T ss_dssp             CEEEEEES
T ss_pred             CcEEEEeC
Confidence            89887764

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=90.94  E-value=0.75  Score=35.77  Aligned_cols=76  Identities=12%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             CeEEEEECC--CChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCC
Q 031223           25 NPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~--~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~P   99 (163)
                      ++||+|+-.  ......+.++|++.|+++++++.++.  +.+++.  +||.||+.--..+.. .....+.|+++ .++-=
T Consensus         5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d~~~~~l-~~~~~~~L~~yV~~GGg   81 (259)
T 3rht_A            5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSDYPAERM-TAQAIDQLVTMVKAGCG   81 (259)
T ss_dssp             -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEESCCGGGB-CHHHHHHHHHHHHTTCE
T ss_pred             ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcCCccccC-CHHHHHHHHHHHHhCCe
Confidence            579999632  12355688899999999999986543  235554  899999953221111 12334555553 44555


Q ss_pred             EEEE
Q 031223          100 LFGV  103 (163)
Q Consensus       100 vLGI  103 (163)
                      ++.+
T Consensus        82 Li~~   85 (259)
T 3rht_A           82 LVML   85 (259)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5555

>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*

Probab=90.86  E-value=0.43  Score=37.10  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             CeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh-C--CC
Q 031223           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G--PT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~--~~   97 (163)
                      |++++|-|....    ...+.++|++.|+++.             ..++|.||..||-+      .+....+.+ .  .+
T Consensus         1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGGDG------T~l~aa~~~~~~~~~   61 (272)
T 2i2c_A            1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGGDG------TFLSAFHQYEERLDE   61 (272)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEESHH------HHHHHHHHTGGGTTT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcCcH------HHHHHHHHHhhcCCC
Confidence            478888774322    2236667788888761             23689999999943      355666665 3  38


Q ss_pred             CCEEEEehH
Q 031223           98 VPLFGVCMG  106 (163)
Q Consensus        98 ~PvLGIC~G  106 (163)
                      +|++||=.|
T Consensus        62 ~PilGIn~G   70 (272)
T 2i2c_A           62 IAFIGIHTG   70 (272)
T ss_dssp             CEEEEEESS
T ss_pred             CCEEEEeCC
Confidence            999999776

>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A

Probab=90.77  E-value=0.45  Score=35.40  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             CCeEEEEE---------CCCChHHHHHHHHHHcCCE--E---EEEeCCCCCH-HHHh---c-cCCCEEEeCCCCCCCCCC
Q 031223           24 KNPIIVID---------NYDSFTYNLCQYMGELGYH--F---EVYRNDELTV-EELK---R-KNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        24 ~~~Ilvid---------~~~~~~~~~~~~l~~~G~~--~---~v~~~~~~~~-~~~~---~-~~~dgvvl~GG~~~~~d~   84 (163)
                      .+++.||-         -.|++...+.++|++.|++  +   .+++.+.... +.+.   . .++|.||.+||.+ +...
T Consensus         3 ~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg-~g~~   81 (195)
T 1di6_A            3 TLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG-PARR   81 (195)
T ss_dssp             CEEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS-SSTT
T ss_pred             CCEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC-CCCC
Confidence            45677772         2355667789999999876  2   2344321011 1121   1 1699999999965 3322


Q ss_pred             hhHHHHHHH
Q 031223           85 GISLQTVLE   93 (163)
Q Consensus        85 ~~~~~~i~~   93 (163)
                      +...+.+++
T Consensus        82 D~T~ea~~~   90 (195)
T 1di6_A           82 DVTPDATLA   90 (195)
T ss_dssp             CCHHHHHHH
T ss_pred             ccHHHHHHH
Confidence            223344444

>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}

Probab=90.54  E-value=2.3  Score=30.64  Aligned_cols=77  Identities=17%  Similarity=0.088  Sum_probs=43.7

Q ss_pred             CeEEEEECCCChHHHHHHH----HHHcCCEEEEEeCCCC--------------------CHHHHhccCCCEEEeCCCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQY----MGELGYHFEVYRNDEL--------------------TVEELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~----l~~~G~~~~v~~~~~~--------------------~~~~~~~~~~dgvvl~GG~~~   80 (163)
                      ++|+||....+++..+.+.    +++.|++++++...+.                    ..+++.  ++|+||| |.|--
T Consensus         5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--~aD~ii~-gsP~y   81 (199)
T 2zki_A            5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMR--WADGFAI-GSPTR   81 (199)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHH--HCSEEEE-EEECB
T ss_pred             cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHH--hCCEEEE-ECCcc
Confidence            5799986544566655554    4456899988865432                    123333  6999998 55531


Q ss_pred             CCC-ChhHHHHHHHh--------CCCCCEEEEe
Q 031223           81 PQD-SGISLQTVLEL--------GPTVPLFGVC  104 (163)
Q Consensus        81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC  104 (163)
                      ... ...+..++.++        -+++|+.-++
T Consensus        82 ~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~  114 (199)
T 2zki_A           82 YGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFT  114 (199)
T ss_dssp             TTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEE
T ss_pred             ccCccHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence            111 22344444432        2568876554

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=90.53  E-value=1.4  Score=31.80  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=41.6

Q ss_pred             CCCCeEEEEECC--------------CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h----ccCCCEEEeCCC
Q 031223           22 NNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K----RKNPRGVLISPG   77 (163)
Q Consensus        22 ~~~~~Ilvid~~--------------~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~----~~~~dgvvl~GG   77 (163)
                      ...++++||--+              |++...+.++|++.|+++.-+.  .|+  .+.+    .    ..++|.||.+||
T Consensus        13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd--~~~i~~al~~~~a~~~~DlVittGG   90 (178)
T 3iwt_A           13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD--KIKILKAFTDALSIDEVDVIISTGG   90 (178)
T ss_dssp             CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred             CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEecCC
Confidence            345788888432              3445568899999999876432  232  2222    1    246899999999


Q ss_pred             CCCCCCChhHHHHHHH
Q 031223           78 PGAPQDSGISLQTVLE   93 (163)
Q Consensus        78 ~~~~~d~~~~~~~i~~   93 (163)
                      .+ +.+.+...+.+.+
T Consensus        91 ~g-~~~~D~t~ea~~~  105 (178)
T 3iwt_A           91 TG-YSPTDITVETIRK  105 (178)
T ss_dssp             CS-SSTTCCHHHHHGG
T ss_pred             cc-cCCCCchHHHHHH
Confidence            65 3433334444444

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=90.44  E-value=2.3  Score=29.06  Aligned_cols=32  Identities=9%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CeEEEEE---CCCChHHHHHHHHHHcCCEEEEEeC
Q 031223           25 NPIIVID---NYDSFTYNLCQYMGELGYHFEVYRN   56 (163)
Q Consensus        25 ~~Ilvid---~~~~~~~~~~~~l~~~G~~~~v~~~   56 (163)
                      ..|+||-   ..+.+-+.+.+.|.+.|+++..+.+
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP   39 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGR   39 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESS
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECC
Confidence            4699993   3345677889999999986655544

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=90.39  E-value=1  Score=32.46  Aligned_cols=68  Identities=19%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             CCeEEEEEC-------CCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h--cc--CCCEEEeCCCCCCCCCChh
Q 031223           24 KNPIIVIDN-------YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K--RK--NPRGVLISPGPGAPQDSGI   86 (163)
Q Consensus        24 ~~~Ilvid~-------~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~--~~--~~dgvvl~GG~~~~~d~~~   86 (163)
                      .+++.||--       .+++...+.++|++.|+++..+.  .|+  .+.+    .  ..  ++|.||.+||.+ +...+.
T Consensus        13 ~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g-~g~~D~   89 (169)
T 1y5e_A           13 EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTG-ITKRDV   89 (169)
T ss_dssp             CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCS-SSTTCC
T ss_pred             CCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC-CCCCCC
Confidence            467777733       23455668899999999765332  232  2332    1  12  699999999954 343334


Q ss_pred             HHHHHHHh
Q 031223           87 SLQTVLEL   94 (163)
Q Consensus        87 ~~~~i~~~   94 (163)
                      ..+.+.++
T Consensus        90 t~ea~~~~   97 (169)
T 1y5e_A           90 TIEAVSAL   97 (169)
T ss_dssp             HHHHHHTT
T ss_pred             cHHHHHHH
Confidence            45555553

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=90.25  E-value=0.82  Score=33.30  Aligned_cols=82  Identities=10%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhc-------------cCCCEEEeCCCCCCCCCC-hh
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDS-GI   86 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~-------------~~~dgvvl~GG~~~~~d~-~~   86 (163)
                      ..+.+|+|||....+...+.+.|+..|+ .+.........++.+..             ..||.||+-=.  .+... -+
T Consensus        59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~e  136 (206)
T 3mm4_A           59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYE  136 (206)
T ss_dssp             TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHH
T ss_pred             cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHH
Confidence            3457899999765566678889999998 66555321111222222             26998887211  12222 23


Q ss_pred             HHHHHHHh----CCCCCEEEEeh
Q 031223           87 SLQTVLEL----GPTVPLFGVCM  105 (163)
Q Consensus        87 ~~~~i~~~----~~~~PvLGIC~  105 (163)
                      +.+.+++.    ...+|++-+.-
T Consensus       137 l~~~lr~~~~~~~~~~piI~ls~  159 (206)
T 3mm4_A          137 ATREIRKVEKSYGVRTPIIAVSG  159 (206)
T ss_dssp             HHHHHHHHHHTTTCCCCEEEEES
T ss_pred             HHHHHHhhhhhcCCCCcEEEEEC
Confidence            45566653    46789998875

>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9

Probab=90.21  E-value=0.33  Score=37.41  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             HHHHHHHHHcCCEEEEEeCC----C--CCHHHHhccCCCEEEeCCCCCCCCC-----------ChhHHHHHHHh-CCCCC
Q 031223           38 YNLCQYMGELGYHFEVYRND----E--LTVEELKRKNPRGVLISPGPGAPQD-----------SGISLQTVLEL-GPTVP   99 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~----~--~~~~~~~~~~~dgvvl~GG~~~~~d-----------~~~~~~~i~~~-~~~~P   99 (163)
                      ..+.++|+..++++++++..    .  .+.+++.  +||.||+.+-+.+...           .+...+.|+++ .++..
T Consensus        43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg  120 (256)
T 2gk3_A           43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG  120 (256)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence            45888999899999988421    1  1234444  8999999775432100           02345667774 56899


Q ss_pred             EEEE
Q 031223          100 LFGV  103 (163)
Q Consensus       100 vLGI  103 (163)
                      +++|
T Consensus       121 ll~i  124 (256)
T 2gk3_A          121 LLMI  124 (256)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=90.09  E-value=0.82  Score=32.79  Aligned_cols=59  Identities=15%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             CCChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           33 YDSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        33 ~~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      .+++...+.++|++.|+++..+.  .|+  .+.+    ..  .  ++|.||.+||.+ +...+...+.+.++
T Consensus        19 ~D~n~~~l~~~l~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g-~g~~D~t~ea~~~~   87 (164)
T 2is8_A           19 QDTTHLAIREVLAGGPFEVAAYELVPDE--PPMIKKVLRLWADREGLDLILTNGGTG-LAPRDRTPEATREL   87 (164)
T ss_dssp             CCCHHHHHHHHHTTSSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS-SSTTCCHHHHHHTT
T ss_pred             ccchHHHHHHHHHHCCCeEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEEcCCCC-CCCCCChHHHHHHH
Confidence            46677789999999998765332  232  2222    11  2  699999999954 33333445556553

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=90.06  E-value=0.85  Score=29.75  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTV   98 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~   98 (163)
                      ..++|+|+|....+...+.+.|+..|+ .+............+....+|.+++-=.  .+... -++.+.+++.  ....
T Consensus         3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~l~~~l~~~~~~~~~   80 (128)
T 1jbe_A            3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNMDGLELLKTIRAXXAMSAL   80 (128)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSSCHHHHHHHHHC--CCTTC
T ss_pred             CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence            446899998765566678888888887 4544432101122233346898877221  12212 2344555542  3468


Q ss_pred             CEEEEeh
Q 031223           99 PLFGVCM  105 (163)
Q Consensus        99 PvLGIC~  105 (163)
                      |++-+.-
T Consensus        81 ~ii~~s~   87 (128)
T 1jbe_A           81 PVLMVTA   87 (128)
T ss_dssp             CEEEEES
T ss_pred             cEEEEec
Confidence            8887764

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=89.94  E-value=1  Score=30.04  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL  101 (163)
                      .+|+|||....+...+.+.|...|+.+..........+.+....+|.+|+-=.  .+... -++.+.+++.  ....|++
T Consensus         4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii   81 (138)
T 3c3m_A            4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPVL   81 (138)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCEE
Confidence            58999997655666788889888987764432100122233347898887221  11111 2345555553  3468998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        82 ~ls~   85 (138)
T 3c3m_A           82 MLTA   85 (138)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8763

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=89.81  E-value=0.45  Score=31.86  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhC--CCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~--~~~PvL  101 (163)
                      .++|+|+|........+.+.|++. +.+..........+.+....+|.||+-=... ..+.-.+.+.+++..  .+.|++
T Consensus         3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~ii   80 (140)
T 3n53_A            3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDII-GENSPNLCLKLKRSKGLKNVPLI   80 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCTTCCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCC-CCcHHHHHHHHHcCcccCCCCEE
Confidence            468999997555566677888776 6655443210112223334799888732210 011123455666643  678998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        81 ~~s~   84 (140)
T 3n53_A           81 LLFS   84 (140)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7764

>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8

Probab=89.57  E-value=2.4  Score=30.48  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=46.1

Q ss_pred             CeEEEEECC-CChHHHHHH----HHHH-cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-ChhHHHHHHHh---
Q 031223           25 NPIIVIDNY-DSFTYNLCQ----YMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL---   94 (163)
Q Consensus        25 ~~Ilvid~~-~~~~~~~~~----~l~~-~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-~~~~~~~i~~~---   94 (163)
                      ++|+||-.- .+++..+.+    .+++ .|+++++++..+.+.+++.  ++|+||+ |.|--... ...+..++.++   
T Consensus         5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~--~aD~ii~-gsP~y~g~~~~~lk~fld~~~~~   81 (188)
T 2ark_A            5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGD   81 (188)
T ss_dssp             EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGG
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHH--hCCEEEE-EeCccCCcCCHHHHHHHHHHhhh
Confidence            468888542 235555544    4555 6888988887644555665  6999998 55432122 23345555543   


Q ss_pred             ----CCCCCEEEEeh
Q 031223           95 ----GPTVPLFGVCM  105 (163)
Q Consensus        95 ----~~~~PvLGIC~  105 (163)
                          -+++|+.-++-
T Consensus        82 ~~~~l~gk~~~~~~t   96 (188)
T 2ark_A           82 LWGEIDGKIACAFSS   96 (188)
T ss_dssp             TTTSCTTCEEEEEEE
T ss_pred             hHHHhCCCeEEEEEE
Confidence                15778765554

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=89.42  E-value=0.69  Score=30.85  Aligned_cols=81  Identities=9%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCC--EEEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCC-CChhHHHHHHH-
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQ-DSGISLQTVLE-   93 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~--~~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~-d~~~~~~~i~~-   93 (163)
                      ..++|+|||........+...|+..|.  .+..........+.+..     ..+|.||+-=.  .+. +.-.+.+.+++ 
T Consensus         8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~   85 (146)
T 3ilh_A            8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQH   85 (146)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHHh
Confidence            346899999765556678888888888  44433211011222333     56998887322  111 22235566666 


Q ss_pred             ---hCCCCCEEEEeh
Q 031223           94 ---LGPTVPLFGVCM  105 (163)
Q Consensus        94 ---~~~~~PvLGIC~  105 (163)
                         .....|++-+.-
T Consensus        86 ~~~~~~~~~ii~~t~  100 (146)
T 3ilh_A           86 FQPMKNKSIVCLLSS  100 (146)
T ss_dssp             CGGGTTTCEEEEECS
T ss_pred             hhhccCCCeEEEEeC
Confidence               346788887764

>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}

Probab=89.39  E-value=2.2  Score=30.05  Aligned_cols=78  Identities=10%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             CeEEEEEC-CCChHHHH----HHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh---
Q 031223           25 NPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL---   94 (163)
Q Consensus        25 ~~Ilvid~-~~~~~~~~----~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~---   94 (163)
                      |+|+|+-. ..+++..+    .+.|.+.|+++++++....+.+++..  .++|+||| |.|--....+. ..++.++   
T Consensus         1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p~-~~fl~~l~~~   78 (161)
T 3hly_A            1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTPPSQPSEAV-ATALSTIFAA   78 (161)
T ss_dssp             -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECCBSSCCHHH-HHHHHHHHHH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcCCcCCchhH-HHHHHHHHhh
Confidence            46777743 22355554    44556678999888865444555421  36999998 55432222221 2333332   


Q ss_pred             -CCCCCEEEEe
Q 031223           95 -GPTVPLFGVC  104 (163)
Q Consensus        95 -~~~~PvLGIC  104 (163)
                       -+++|+.-+|
T Consensus        79 ~l~gk~v~~fg   89 (161)
T 3hly_A           79 AHNKQAIGLFD   89 (161)
T ss_dssp             CCTTSEEEEEC
T ss_pred             hhCCCEEEEEE
Confidence             3677876654

>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*

Probab=89.36  E-value=2  Score=30.91  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=45.8

Q ss_pred             CCCCCeEEEEECC---CChHHHHHHHHHH---cCCEEEEEeCCCCC--------------HHHH-hc-cCCCEEEeCCCC
Q 031223           21 KNNKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRNDELT--------------VEEL-KR-KNPRGVLISPGP   78 (163)
Q Consensus        21 ~~~~~~Ilvid~~---~~~~~~~~~~l~~---~G~~~~v~~~~~~~--------------~~~~-~~-~~~dgvvl~GG~   78 (163)
                      |...|+|++|...   .+++..+.+++.+   .|.+++++...+.+              ..++ .. .++|+||| |.|
T Consensus         3 m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~-~sP   81 (193)
T 1rtt_A            3 LSDDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLF-ATP   81 (193)
T ss_dssp             ----CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEE-ECC
T ss_pred             CCCCceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEE-Ecc
Confidence            4445789999653   3678888887755   37788877643211              0111 11 26899999 554


Q ss_pred             CCCC-CChhHHHHHHHh-------CCCCCEEEEeh
Q 031223           79 GAPQ-DSGISLQTVLEL-------GPTVPLFGVCM  105 (163)
Q Consensus        79 ~~~~-d~~~~~~~i~~~-------~~~~PvLGIC~  105 (163)
                      -=-. -...+..++.++       -++||++-||-
T Consensus        82 ~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t  116 (193)
T 1rtt_A           82 EYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGA  116 (193)
T ss_dssp             EETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEE
T ss_pred             ccccCcCHHHHHHHHHhccccCcccCCCeEEEEEe
Confidence            2111 123344455443       25788876664

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=88.84  E-value=0.28  Score=32.43  Aligned_cols=89  Identities=9%  Similarity=0.037  Sum_probs=51.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh---ccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK---RKNPRGVLISPGPGAPQDS-GISLQTVLELGPTV   98 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~---~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~   98 (163)
                      +.++|+|||........+.+.|+..+..+.....    .++..   ...+|.||+--..  +... -.+.+.+++.....
T Consensus         2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~~~~l~~~~~~~   75 (135)
T 3eqz_A            2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLMM--PDMDGIEVIRHLAEHKSPA   75 (135)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECCT--TTTHHHHHHHHHHHTTCCC
T ss_pred             CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCCC--CCCCHHHHHHHHHhCCCCC
Confidence            4578999997655666788888887766655532    23321   1238888873221  1111 13455566655668


Q ss_pred             CEEEEehHH-------HHHHHHhCCe
Q 031223           99 PLFGVCMGL-------QCIGEAFGGK  117 (163)
Q Consensus        99 PvLGIC~G~-------QlLa~a~Gg~  117 (163)
                      |++-+.--.       +.+..+++..
T Consensus        76 ~ii~~s~~~~~~~~~~~~~~~~~~~g  101 (135)
T 3eqz_A           76 SLILISGYDSGVLHSAETLALSCGLN  101 (135)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             CEEEEEeccchhHHHHHHHHHHcCCC
Confidence            888765432       4555566543

>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A

Probab=88.79  E-value=2.5  Score=32.33  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             CeEEEEECCCC--hHHHHHHHHHH---cCCEEEEEeCCCC-----CH-----------HHH---hccCCCEEEeCCCCCC
Q 031223           25 NPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDEL-----TV-----------EEL---KRKNPRGVLISPGPGA   80 (163)
Q Consensus        25 ~~Ilvid~~~~--~~~~~~~~l~~---~G~~~~v~~~~~~-----~~-----------~~~---~~~~~dgvvl~GG~~~   80 (163)
                      |||+||+-..+  .+..+.+.++.   -|.+++.+.....     ..           +.+   ...++|++|+.-... 
T Consensus         2 mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~-   80 (245)
T 3qvl_A            2 VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD-   80 (245)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC-
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh-
Confidence            68999987665  46667766665   3566665543211     10           111   124799999955321 


Q ss_pred             CCCChhHHHHHHHhCCCCCEEEEehHHHHHHHHhCCeeee
Q 031223           81 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR  120 (163)
Q Consensus        81 ~~d~~~~~~~i~~~~~~~PvLGIC~G~QlLa~a~Gg~v~~  120 (163)
                         . .+ +.+++. -++||+||.--.-..+...|+++.-
T Consensus        81 ---~-~l-~~lr~~-~~iPvigi~e~~~~~a~~~~~rigV  114 (245)
T 3qvl_A           81 ---P-GL-LAAREL-AQGPVIGIAEAAMHMATMVATRFSI  114 (245)
T ss_dssp             ---T-TH-HHHHHH-CSSCEEEHHHHHHHHHHHHCSCEEE
T ss_pred             ---h-HH-HHHHHH-cCCCEECccHHHHHHHHHcCCEEEE
Confidence               1 23 556663 2499999976554455556776654

>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1

Probab=88.66  E-value=3.9  Score=27.25  Aligned_cols=76  Identities=11%  Similarity=0.024  Sum_probs=43.5

Q ss_pred             eEEEEEC-CCChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCChh--HHHHHHHh---
Q 031223           26 PIIVIDN-YDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSGI--SLQTVLEL---   94 (163)
Q Consensus        26 ~Ilvid~-~~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~~--~~~~i~~~---   94 (163)
                      +|+|+-. ..+++..+++.    +++.|+++++++..+.+.+++.  ++|.||+ |.|- .-...+.  +..++.++   
T Consensus         1 ~i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~-g~p~y~~~~~~~~~~~~fl~~l~~~   77 (137)
T 2fz5_A            1 MVEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCPAMGSEELEDSVVEPFFTDLAPK   77 (137)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECCCBTTTBCCHHHHHHHHHHHGGG
T ss_pred             CEEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEE-EccccCCCCCCHHHHHHHHHHhhhh
Confidence            3566632 22356555554    4556889998886544455554  7999998 4442 1122334  55666553   


Q ss_pred             CCCCCEEEEe
Q 031223           95 GPTVPLFGVC  104 (163)
Q Consensus        95 ~~~~PvLGIC  104 (163)
                      -+++|+.-+|
T Consensus        78 l~~k~~~~~~   87 (137)
T 2fz5_A           78 LKGKKVGLFG   87 (137)
T ss_dssp             CSSCEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            2567766443

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=88.63  E-value=1.3  Score=32.04  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             CCeEEEEECC-------CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----h---cc-CCCEEEeCCCCCCCCCChh
Q 031223           24 KNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----K---RK-NPRGVLISPGPGAPQDSGI   86 (163)
Q Consensus        24 ~~~Ilvid~~-------~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~---~~-~~dgvvl~GG~~~~~d~~~   86 (163)
                      .+++.||--+       +++...+.++|++.|+++..+.  .|+  .+.+    .   .. ++|.||.+||.+ +.+.+.
T Consensus        10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd--~~~i~~~l~~a~~~~~~DlVittGG~g-~~~~D~   86 (172)
T 1mkz_A           10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN--RYAIRAQVSAWIASDDVQVVLITGGTG-LTEGDQ   86 (172)
T ss_dssp             CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC--HHHHHHHHHHHHHSSSCCEEEEESCCS-SSTTCC
T ss_pred             CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC--HHHHHHHHHHHHhcCCCCEEEeCCCCC-CCCCCC
Confidence            4678888332       3345568899999999865332  232  2332    1   11 499999999965 333333


Q ss_pred             HHHHHHH
Q 031223           87 SLQTVLE   93 (163)
Q Consensus        87 ~~~~i~~   93 (163)
                      ..+.+.+
T Consensus        87 t~ea~~~   93 (172)
T 1mkz_A           87 APEALLP   93 (172)
T ss_dssp             HHHHHGG
T ss_pred             HHHHHHH
Confidence            3344443

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=88.43  E-value=2  Score=32.90  Aligned_cols=52  Identities=21%  Similarity=0.118  Sum_probs=34.9

Q ss_pred             CCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeC
Q 031223           24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS   75 (163)
Q Consensus        24 ~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~   75 (163)
                      +++|+||-.+.+.        ...+.+++++.|+++.++..+......+...++|.++..
T Consensus         2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~   61 (306)
T 1iow_A            2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA   61 (306)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred             CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence            5789999765442        235888999999999888765333333333468877753

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=88.42  E-value=0.97  Score=34.00  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=45.2

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (163)
                      +..++|+|||....+...+...|...|+.+..........+.+....||.||+-=.  .+... -++.+.+++ ....|+
T Consensus        35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~i  111 (249)
T 3q9s_A           35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPI  111 (249)
T ss_dssp             --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCE
Confidence            34468999997655666788888888886654432111122233357998887211  01111 123444444 356898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus       112 I~lt~  116 (249)
T 3q9s_A          112 IVLTA  116 (249)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            87764

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=88.08  E-value=1.3  Score=28.38  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=44.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      .+|+|+|........+...|...|+.+............+....+|.+++--.  .+... -.+.+.+++. ...|++-+
T Consensus         2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~-~~~~ii~~   78 (120)
T 2a9o_A            2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLM--LPEIDGLEVAKTIRKT-SSVPILML   78 (120)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence            37999987655666788888888988764432100112222347998877322  12212 2344555553 56898877


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      .-
T Consensus        79 s~   80 (120)
T 2a9o_A           79 SA   80 (120)
T ss_dssp             ES
T ss_pred             ec
Confidence            63

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=88.06  E-value=0.35  Score=32.50  Aligned_cols=79  Identities=13%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      ..++|+|+|....+...+...|...|+.+..........+.+....+|.+++-=.  .+... -.+.+.+++.. ..|++
T Consensus         3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii   79 (136)
T 2qzj_A            3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIV   79 (136)
T ss_dssp             -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEE
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEE
Confidence            4578999997655666788888888887654432101122233347898887211  11111 12344444433 68988


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        80 ~ls   82 (136)
T 2qzj_A           80 YMT   82 (136)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=87.90  E-value=0.28  Score=33.39  Aligned_cols=82  Identities=11%  Similarity=0.123  Sum_probs=44.1

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh----CC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL----GP   96 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~----~~   96 (163)
                      ...++|+|+|........+.+.|.+.|+.+..........+.+....||.|++-=.  .+... -++.+.+++.    ..
T Consensus        12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~~g~~~~~~lr~~~~~~~~   89 (143)
T 3m6m_D           12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGMNGLDMLKQLRVMQASGMR   89 (143)
T ss_dssp             ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHHHTTCC
T ss_pred             cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhchhccCC
Confidence            34578999987554566688888888988765532100112233357998887211  11112 2345556542    24


Q ss_pred             CCCEEEEeh
Q 031223           97 TVPLFGVCM  105 (163)
Q Consensus        97 ~~PvLGIC~  105 (163)
                      ..|++-+.-
T Consensus        90 ~~pii~~s~   98 (143)
T 3m6m_D           90 YTPVVVLSA   98 (143)
T ss_dssp             CCCEEEEES
T ss_pred             CCeEEEEeC
Confidence            578887754

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=87.84  E-value=1.2  Score=32.46  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      .++|+|+|....+...+.+.|...|+.+..........+.+....+|.+|+--..  +... -.+.+.+++. ...|++-
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l--~~~~g~~~~~~l~~~-~~~~ii~   80 (230)
T 2oqr_A            4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTDVCKQLRAR-SSVPVIM   80 (230)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSC--SSSCHHHHHHHHHHH-CSCSEEE
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCC--CCCCHHHHHHHHHcC-CCCCEEE
Confidence            4689999976556667888898889887644321001122223479988873221  1111 2344555553 5689987


Q ss_pred             EehH
Q 031223          103 VCMG  106 (163)
Q Consensus       103 IC~G  106 (163)
                      +.--
T Consensus        81 lt~~   84 (230)
T 2oqr_A           81 VTAR   84 (230)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            7643

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=87.83  E-value=0.16  Score=35.00  Aligned_cols=77  Identities=10%  Similarity=0.132  Sum_probs=44.7

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCC-CCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~-~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~Pv  100 (163)
                      .++||+|||-.......+.+.|++.|+++.-...+ ....+.+....||.+++ -= ..|...+ ++.+.+++  +++|+
T Consensus         7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll-Di-~mP~~~G~el~~~lr~--~~ipv   82 (123)
T 2lpm_A            7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII-DV-NLDGEPSYPVADILAE--RNVPF   82 (123)
T ss_dssp             CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE-CS-SSSSCCSHHHHHHHHH--TCCSS
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE-ec-CCCCCCHHHHHHHHHc--CCCCE
Confidence            34789999887777888899999999876322111 00122233457998887 11 1122222 34455555  46887


Q ss_pred             EEE
Q 031223          101 FGV  103 (163)
Q Consensus       101 LGI  103 (163)
                      +-+
T Consensus        83 I~l   85 (123)
T 2lpm_A           83 IFA   85 (123)
T ss_dssp             CCB
T ss_pred             EEE
Confidence            543

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=87.77  E-value=0.95  Score=30.69  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV   98 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~   98 (163)
                      ...+.+|+|+|....+...+.+.|.+.|....+......  ..+.+....+|.||+--.. ...+.-.+.+.+++.....
T Consensus        12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~   90 (152)
T 3eul_A           12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYELPT   90 (152)
T ss_dssp             --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCSC
T ss_pred             CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence            345578999997655677788899888865444222211  1122333479988883221 1112223455566655668


Q ss_pred             CEEEEeh
Q 031223           99 PLFGVCM  105 (163)
Q Consensus        99 PvLGIC~  105 (163)
                      |++-+.-
T Consensus        91 ~ii~~s~   97 (152)
T 3eul_A           91 RVLLISA   97 (152)
T ss_dssp             EEEEEES
T ss_pred             eEEEEEc
Confidence            8887764

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=87.40  E-value=0.37  Score=31.52  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhC--CCCCE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTVPL  100 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~--~~~Pv  100 (163)
                      .++|+|+|........+...|...|+.+..........+.+....+|.+++-=.  .+... -.+.+.+++..  ...|+
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i   79 (127)
T 2jba_A            2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGGSGIQFIKHLRRESMTRDIPV   79 (127)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhCcccCCCCE
Confidence            358999987655666788888888987664432100011122236898876211  01111 12344555432  57898


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        80 i~~s~   84 (127)
T 2jba_A           80 VMLTA   84 (127)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            87754

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=87.30  E-value=2  Score=31.20  Aligned_cols=53  Identities=23%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             CCeEEEEEC---------CCChHHHHHHHHH---HcCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCC
Q 031223           24 KNPIIVIDN---------YDSFTYNLCQYMG---ELGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPG   79 (163)
Q Consensus        24 ~~~Ilvid~---------~~~~~~~~~~~l~---~~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~   79 (163)
                      .+++.||--         .+++...+.++|+   +.|+++ .+.  .|+  .+.+    ..  .  ++|.||.+||.+
T Consensus         5 ~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd--~~~I~~~l~~~~~~~~~DlVittGG~g   79 (178)
T 2pbq_A            5 KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE--RDLIEKTLIELADEKGCSLILTTGGTG   79 (178)
T ss_dssp             CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            457777732         3445566888887   899877 332  232  2222    11  2  699999999965

>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}

Probab=86.90  E-value=0.87  Score=33.16  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      ++|+|+|....+...+...|...|+.+..........+.+....||.+| .++.    +.-.+.+.+++.....|++-+.
T Consensus         1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~~----~g~~~~~~lr~~~~~~~ii~lt   75 (223)
T 2hqr_A            1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSDK----NALSFVSRIKEKHSSIVVLVSS   75 (223)
T ss_dssp             CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECCT----THHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCCC----CHHHHHHHHHhCCCCCcEEEEE
Confidence            4799998765566678888888898876443210012223334799888 3321    1123455555552278998876


Q ss_pred             hH
Q 031223          105 MG  106 (163)
Q Consensus       105 ~G  106 (163)
                      --
T Consensus        76 ~~   77 (223)
T 2hqr_A           76 DN   77 (223)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*

Probab=86.88  E-value=6.7  Score=27.97  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=42.8

Q ss_pred             CeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCCC-------------------CCHHHHhccCCCEEEeCCCCCC
Q 031223           25 NPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA   80 (163)
Q Consensus        25 ~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~~-------------------~~~~~~~~~~~dgvvl~GG~~~   80 (163)
                      ++|+||-.- .+++..+.+    .+++.|+++++++..+                   ...+++.  ++|+||| |.|--
T Consensus         6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~-gsP~y   82 (200)
T 2a5l_A            6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSPTR   82 (200)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEECB
T ss_pred             ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHH--HCCEEEE-EcChh
Confidence            478888542 345655554    4455788998886543                   1133343  7999998 55431


Q ss_pred             CCC-ChhHHHHHHHh--------CCCCCEEEEe
Q 031223           81 PQD-SGISLQTVLEL--------GPTVPLFGVC  104 (163)
Q Consensus        81 ~~d-~~~~~~~i~~~--------~~~~PvLGIC  104 (163)
                      ... ...+..++.++        -+++|+.-+|
T Consensus        83 ~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~  115 (200)
T 2a5l_A           83 FGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFT  115 (200)
T ss_dssp             TTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEE
T ss_pred             ccCccHHHHHHHHHHHHHhhccccCCCEEEEEE
Confidence            111 23344444432        2567876544

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=86.69  E-value=4.9  Score=30.34  Aligned_cols=54  Identities=17%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223           24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (163)
Q Consensus        24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG   77 (163)
                      +.+|.+|-.  .+.|-..    +.+.+++.|+.+.++.....+.+       .+...++||||+.+.
T Consensus         4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~   70 (305)
T 3g1w_A            4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAI   70 (305)
T ss_dssp             -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred             CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence            456777733  3344333    55667778999988432212221       122348999999775

>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A

Probab=86.68  E-value=2.6  Score=31.00  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=39.1

Q ss_pred             CCeEEEEEC---------CCChHHHHHHHHHH---cCCEEEEEe--CCCCCHHHH----hc--c--CCCEEEeCCCCCCC
Q 031223           24 KNPIIVIDN---------YDSFTYNLCQYMGE---LGYHFEVYR--NDELTVEEL----KR--K--NPRGVLISPGPGAP   81 (163)
Q Consensus        24 ~~~Ilvid~---------~~~~~~~~~~~l~~---~G~~~~v~~--~~~~~~~~~----~~--~--~~dgvvl~GG~~~~   81 (163)
                      .+++.||--         .+++...+..+|++   .|+++..+.  +|+  .+.+    ..  .  ++|.||.+||.+ +
T Consensus        14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd--~~~I~~al~~a~~~~~~DlVIttGGtg-~   90 (189)
T 1jlj_A           14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE--IEEIKETLIDWCDEKELNLILTTGGTG-F   90 (189)
T ss_dssp             CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS-S
T ss_pred             CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC--HHHHHHHHHHHhhcCCCCEEEEcCCCC-C
Confidence            357777732         34455668889988   798765332  232  2222    11  2  699999999965 3


Q ss_pred             CCChhHHHHHHH
Q 031223           82 QDSGISLQTVLE   93 (163)
Q Consensus        82 ~d~~~~~~~i~~   93 (163)
                      .+.+...+.+++
T Consensus        91 g~~D~t~eal~~  102 (189)
T 1jlj_A           91 APRDVTPEATKE  102 (189)
T ss_dssp             STTCCHHHHHHH
T ss_pred             CCcccHHHHHHH
Confidence            333334444444

>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*

Probab=86.44  E-value=1.9  Score=31.28  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             CeEEEEECC---CChHHHHHHH-----HHHcCCEEEEEeCCCCCH-------------HHHh--ccCCCEEEeCCCCCCC
Q 031223           25 NPIIVIDNY---DSFTYNLCQY-----MGELGYHFEVYRNDELTV-------------EELK--RKNPRGVLISPGPGAP   81 (163)
Q Consensus        25 ~~Ilvid~~---~~~~~~~~~~-----l~~~G~~~~v~~~~~~~~-------------~~~~--~~~~dgvvl~GG~~~~   81 (163)
                      ++|++|...   .+++..+.++     +.+.|.+++++...+.+.             .++.  -.++|+||+ |.|--.
T Consensus         3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~-~sP~y~   81 (197)
T 2vzf_A            3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV-ATPIYK   81 (197)
T ss_dssp             EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE-EEECBT
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEE-EeCccC
Confidence            478888654   3677766654     444588888887543222             1111  126899998 554211


Q ss_pred             C-CChhHHHHHHHh----CCCCCEEEEeh
Q 031223           82 Q-DSGISLQTVLEL----GPTVPLFGVCM  105 (163)
Q Consensus        82 ~-d~~~~~~~i~~~----~~~~PvLGIC~  105 (163)
                      . -...+..++..+    -+++|++-++-
T Consensus        82 ~~~p~~lK~~ld~l~~~~~~gK~~~~~~t  110 (197)
T 2vzf_A           82 ASYTGLLKAFLDILPQFALAGKAALPLAT  110 (197)
T ss_dssp             TBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred             CCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence            1 123344455443    24788886665

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=86.41  E-value=1.3  Score=29.32  Aligned_cols=78  Identities=13%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      ++|+|+|........+.+.|+..|....+......  ..+.+....+|.+|+-=.  .+... -++.+.+++.....|++
T Consensus         4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~--lp~~~g~~~~~~l~~~~~~~~ii   81 (133)
T 3b2n_A            4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIE--MPGMTGLEVLAEIRKKHLNIKVI   81 (133)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHTTCSCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHHHCCCCcEE
Confidence            57999987655666677888877632223222111  112222347898887221  12212 23455566544568988


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        82 ~ls   84 (133)
T 3b2n_A           82 IVT   84 (133)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*

Probab=86.07  E-value=0.52  Score=30.48  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=44.8

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|+|+|........+.+.|...|+.+............+....+|.+++--..  +. +.-.+.+.+++.....|++-
T Consensus         3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~--~~~~g~~~~~~l~~~~~~~~ii~   80 (124)
T 1dc7_A            3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRM--PGMDGLALLKQIKQRHPMLPVII   80 (124)
T ss_dssp             CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCS--SHHHHCSTHHHHHHHCTTSCCCC
T ss_pred             ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeec--CCCCHHHHHHHHHhhCCCCCEEE
Confidence            4679999987777778888898888876544321111222233468888772221  11 11123455555445677765


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        81 ~s   82 (124)
T 1dc7_A           81 MT   82 (124)
T ss_dssp             BC
T ss_pred             Ee
Confidence            53

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=85.96  E-value=8.6  Score=30.22  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=37.3

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC--HHHHh---------------c-cCCCEEEeCCCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT--VEELK---------------R-KNPRGVLISPGP   78 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~---------------~-~~~dgvvl~GG~   78 (163)
                      .++|+||-.+.+-...+++.|.+.|+++.+.+....+  .+.+.               . .++|.||+|+|-
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence            3579999887666666888899999998888643211  11111               1 258999999885

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=85.87  E-value=1.9  Score=30.87  Aligned_cols=80  Identities=13%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (163)
                      +..+|+|||........+.+.|...|+.+. ...........+....||.||+-=.  .+... -.+.+.+++.. ..|+
T Consensus        12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~~g~~~~~~l~~~~-~~pi   88 (205)
T 1s8n_A           12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKR-IAPI   88 (205)
T ss_dssp             CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTT-CSCE
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCCChHHHHHHHHhcC-CCCE
Confidence            446899999765566678888888898876 3321100112222347998887221  12212 23445555532 3488


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        89 i~lt~   93 (205)
T 1s8n_A           89 VVLTA   93 (205)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87753

>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A

Probab=85.82  E-value=1.1  Score=34.80  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=48.5

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEE-EEeCCCCCHHHHhccCCCEEEe---CC-CCCCCCCChhHHHHHHHhCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLI---SP-GPGAPQDSGISLQTVLELGP   96 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~-v~~~~~~~~~~~~~~~~dgvvl---~G-G~~~~~d~~~~~~~i~~~~~   96 (163)
                      ....+|+++|........+...|+..|+.+. ....-...++.+....||.|++   ++ |.    +--++.+.|++.. 
T Consensus       158 ~l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~m----dG~e~~~~ir~~~-  232 (286)
T 3n0r_A          158 ELATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGS----SGIDAVKDILGRM-  232 (286)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSC----CTTTTTHHHHHHT-
T ss_pred             cCCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCC----CHHHHHHHHHhcC-
Confidence            3456899998755566678888999999887 4432111123333457998876   22 21    1113455666655 


Q ss_pred             CCCEEEEeh
Q 031223           97 TVPLFGVCM  105 (163)
Q Consensus        97 ~~PvLGIC~  105 (163)
                      ++||+.+--
T Consensus       233 ~~piI~lT~  241 (286)
T 3n0r_A          233 DVPVIFITA  241 (286)
T ss_dssp             TCCEEEEES
T ss_pred             CCCEEEEeC
Confidence            899998763

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=85.78  E-value=1.5  Score=29.13  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=41.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL  100 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~Pv  100 (163)
                      .++|+|+|....+...+.+.|... |+.+.....+.. ....+....+|.+|+--..  +... -.+.+.+++.....|+
T Consensus         9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~i   86 (143)
T 2qv0_A            9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINI--PSLDGVLLAQNISQFAHKPFI   86 (143)
T ss_dssp             -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSC--SSSCHHHHHHHHTTSTTCCEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCC--CCCCHHHHHHHHHccCCCceE
Confidence            468999997655666788888876 666432222100 1122333479988873221  1111 1233444443344567


Q ss_pred             EEEeh
Q 031223          101 FGVCM  105 (163)
Q Consensus       101 LGIC~  105 (163)
                      +-+.-
T Consensus        87 i~~s~   91 (143)
T 2qv0_A           87 VFITA   91 (143)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            66653

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=85.67  E-value=2.3  Score=27.84  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT   97 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~   97 (163)
                      .+++|+|+|....+...+.+.|++.|+. +............+.. ..+|.|++-=.  .+...+ .+.+.+++.  ...
T Consensus         4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~~g~~~~~~lr~~~~~~~   81 (129)
T 3h1g_A            4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEMNGLDLVKKVRSDSRFKE   81 (129)
T ss_dssp             --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSSCHHHHHHHHHTSTTCTT
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCC
Confidence            3578999997655666788889989985 4333211001122222 25887776211  122222 345555552  256


Q ss_pred             CCEEEEeh
Q 031223           98 VPLFGVCM  105 (163)
Q Consensus        98 ~PvLGIC~  105 (163)
                      .|++-+.-
T Consensus        82 ~pii~~s~   89 (129)
T 3h1g_A           82 IPIIMITA   89 (129)
T ss_dssp             CCEEEEES
T ss_pred             CeEEEEeC
Confidence            89988773

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=85.51  E-value=2.4  Score=33.06  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=35.2

Q ss_pred             CCCeEEEEECCCCh--------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEe
Q 031223           23 NKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI   74 (163)
Q Consensus        23 ~~~~Ilvid~~~~~--------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl   74 (163)
                      ++++|+||--+.|-        ...+.++|++.|+++..+.........+...++|.++.
T Consensus        12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~   71 (317)
T 4eg0_A           12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFN   71 (317)
T ss_dssp             GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEE
T ss_pred             hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEE
Confidence            45789999765442        23477899999999998875432233444457898875

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=84.81  E-value=0.42  Score=31.40  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=43.3

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCC-EEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CC
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GP   96 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~-~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~   96 (163)
                      ....++|+|+|........+.+.|...|+ .+............+....+|.+++-=.  .+...+ .+.+.+++.  ..
T Consensus         3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~   80 (129)
T 1p6q_A            3 LAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFN--MPKMDGLGLLQAVRANPATK   80 (129)
T ss_dssp             CSSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSS--SCSSCHHHHHHHHTTCTTST
T ss_pred             ccccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCC--CCCCCHHHHHHHHhcCcccc
Confidence            34457899999765566678888888887 3432211000112223346898877221  111121 234444442  24


Q ss_pred             CCCEEEEe
Q 031223           97 TVPLFGVC  104 (163)
Q Consensus        97 ~~PvLGIC  104 (163)
                      ..|++-+.
T Consensus        81 ~~~ii~~s   88 (129)
T 1p6q_A           81 KAAFIILT   88 (129)
T ss_dssp             TCEEEECC
T ss_pred             CCCEEEEe
Confidence            67877664

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=84.70  E-value=0.57  Score=31.38  Aligned_cols=80  Identities=6%  Similarity=0.123  Sum_probs=45.4

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-----CCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-----GPT   97 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-----~~~   97 (163)
                      ..+|+|+|....+...+...|+..|+.+..........+.+....+|.+|+-=.  .+. +.-.+.+.+++.     ...
T Consensus        10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~--lp~~~g~~~~~~l~~~~~~~~~~~   87 (140)
T 3c97_A           10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQ--MPVMDGLEAVSEIRNYERTHNTKR   87 (140)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTT--CCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHhhhhhcCCCc
Confidence            468999997655666677888888887766532111122233347998887221  111 112344555542     245


Q ss_pred             CCEEEEeh
Q 031223           98 VPLFGVCM  105 (163)
Q Consensus        98 ~PvLGIC~  105 (163)
                      .|++.+.-
T Consensus        88 ~~ii~~s~   95 (140)
T 3c97_A           88 ASIIAITA   95 (140)
T ss_dssp             CCCEEEES
T ss_pred             eEEEEEeC
Confidence            78887753

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=84.59  E-value=5.3  Score=28.44  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=42.4

Q ss_pred             CCeEEEEEC---------CCChHHHHHHHHHHc-----CCEEEEEe--CCCCCHHHH----hc----cCCCEEEeCCCCC
Q 031223           24 KNPIIVIDN---------YDSFTYNLCQYMGEL-----GYHFEVYR--NDELTVEEL----KR----KNPRGVLISPGPG   79 (163)
Q Consensus        24 ~~~Ilvid~---------~~~~~~~~~~~l~~~-----G~~~~v~~--~~~~~~~~~----~~----~~~dgvvl~GG~~   79 (163)
                      .+++.||--         .+++...+.+.|++.     |+++..+.  .|+  .+.+    ..    .++|.||.+||.+
T Consensus         5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd--~~~i~~~l~~~~~~~~~DlVittGG~g   82 (167)
T 1uuy_A            5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE--VERIKDILQKWSDVDEMDLILTLGGTG   82 (167)
T ss_dssp             SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC--HHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred             CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC--HHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            457777732         244455677888887     88765332  232  2222    11    2699999999954


Q ss_pred             CCCCChhHHHHHHHh-CCCCC
Q 031223           80 APQDSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        80 ~~~d~~~~~~~i~~~-~~~~P   99 (163)
                       +.+.+...+.+.++ +...|
T Consensus        83 -~g~~D~t~~a~~~~~~~~l~  102 (167)
T 1uuy_A           83 -FTPRDVTPEATKKVIERETP  102 (167)
T ss_dssp             -SSTTCCHHHHHHHHCSEECH
T ss_pred             -CCCCCchHHHHHHHhcCCCC
Confidence             44444455666664 43333

>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*

Probab=84.55  E-value=2.4  Score=28.63  Aligned_cols=67  Identities=10%  Similarity=-0.002  Sum_probs=38.9

Q ss_pred             ChHHHHH----HHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCC-CCCCCh--hHHHHHHHh---CCCCCEEEEe
Q 031223           35 SFTYNLC----QYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-APQDSG--ISLQTVLEL---GPTVPLFGVC  104 (163)
Q Consensus        35 ~~~~~~~----~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~-~~~d~~--~~~~~i~~~---~~~~PvLGIC  104 (163)
                      +++..++    +.+++.|+++++++..+.+.+++.  ++|.||+ |.|- .-...+  .+.+++.++   -+++|+.-+|
T Consensus        10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iii-g~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~   86 (138)
T 5nul_A           10 GNTEKMAELIAKGIIESGKDVNTINVSDVNIDELL--NEDILIL-GCSAMTDEVLEESEFEPFIEEISTKISGKKVALFG   86 (138)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEE-EECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred             chHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEE-EcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence            4555544    455667888888876544555654  7999988 4442 111112  345555553   2567766554

>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A

Probab=84.28  E-value=3  Score=29.39  Aligned_cols=79  Identities=13%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             CCeEEEEEC-CCChHHHH----HHHHHHcCCEEEEEeCCCC-CHHHHhc--cCCCEEEeCCCCCCCCCChhHHHHHHHh-
Q 031223           24 KNPIIVIDN-YDSFTYNL----CQYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL-   94 (163)
Q Consensus        24 ~~~Ilvid~-~~~~~~~~----~~~l~~~G~~~~v~~~~~~-~~~~~~~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~-   94 (163)
                      ..+|+|+-. ..+++..+    .+.+++.|+++++++.... +.+++..  .++|+||| |.|--....+ ..+++..+ 
T Consensus         4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gspty~g~~p-~~~~l~~l~   81 (159)
T 3fni_A            4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMSPAASAAS-IQGALSTIL   81 (159)
T ss_dssp             CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECCBTTSHHH-HHHHHHHHH
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcCcCCCCcc-HHHHHHHHH
Confidence            356888843 22355554    4455667999999887644 5554421  36999998 5542211112 12333332 


Q ss_pred             ---CCCCCEEEEe
Q 031223           95 ---GPTVPLFGVC  104 (163)
Q Consensus        95 ---~~~~PvLGIC  104 (163)
                         -.++|+.-++
T Consensus        82 ~~~~~~k~va~fg   94 (159)
T 3fni_A           82 GSVNEKQAVGIFE   94 (159)
T ss_dssp             HHCCTTSEEEEEC
T ss_pred             hhcccCCEEEEEE
Confidence               3567766554

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=83.82  E-value=4  Score=31.11  Aligned_cols=73  Identities=14%  Similarity=-0.009  Sum_probs=40.5

Q ss_pred             CeEEEEE--CCCCh----HHHHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223           25 NPIIVID--NYDSF----TYNLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (163)
Q Consensus        25 ~~Ilvid--~~~~~----~~~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~i   91 (163)
                      .+|.+|-  ..+.|    ...+.+++++.|+.+.+...+ .+.+       .+...++||||+.+...+  .   ..+.+
T Consensus         3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~---~~~~~   76 (313)
T 3m9w_A            3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYNGQ--V---LSNVV   76 (313)
T ss_dssp             CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSSTT--S---CHHHH
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChh--h---hHHHH
Confidence            3566662  22333    334667778899999888754 2221       122358999999775321  1   12334


Q ss_pred             HHh-CCCCCEEEE
Q 031223           92 LEL-GPTVPLFGV  103 (163)
Q Consensus        92 ~~~-~~~~PvLGI  103 (163)
                      +++ +.++|+.-+
T Consensus        77 ~~~~~~~iPvV~~   89 (313)
T 3m9w_A           77 KEAKQEGIKVLAY   89 (313)
T ss_dssp             HHHHTTTCEEEEE
T ss_pred             HHHHHCCCeEEEE
Confidence            433 456776543

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=83.42  E-value=0.8  Score=29.64  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=45.1

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL  101 (163)
                      .+|+|+|....+...+.+.|+..|+.+............+....+|.+++-=.  .+... -.+.+.+++.  ....|++
T Consensus         2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~ii   79 (124)
T 1mb3_A            2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV   79 (124)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCCcEE
Confidence            47999997655667788889888987764421100112222347898887211  11112 2345555553  2468998


Q ss_pred             EEeh
Q 031223          102 GVCM  105 (163)
Q Consensus       102 GIC~  105 (163)
                      -+.-
T Consensus        80 ~~s~   83 (124)
T 1mb3_A           80 AVTA   83 (124)
T ss_dssp             EEC-
T ss_pred             EEEC
Confidence            8764

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=83.30  E-value=10  Score=28.11  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CCCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCC------HHHHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           23 NKNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        23 ~~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~------~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      ...+|.+|-.  .+.|-..    +.+.+++.|+.+.+...+...      .+.+...++||||+.+...        .+.
T Consensus         6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--------~~~   77 (276)
T 3jy6_A            6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--------PQT   77 (276)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--------HHH
T ss_pred             CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--------HHH
Confidence            3456777732  2234333    556677789999888754211      1122235899999977532        233


Q ss_pred             HHHh-CCCCCEEEEe
Q 031223           91 VLEL-GPTVPLFGVC  104 (163)
Q Consensus        91 i~~~-~~~~PvLGIC  104 (163)
                      +..+ +.++|+.-+.
T Consensus        78 ~~~l~~~~iPvV~i~   92 (276)
T 3jy6_A           78 VQEILHQQMPVVSVD   92 (276)
T ss_dssp             HHHHHTTSSCEEEES
T ss_pred             HHHHHHCCCCEEEEe
Confidence            3333 4678877654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=83.26  E-value=2.7  Score=37.36  Aligned_cols=82  Identities=9%  Similarity=0.016  Sum_probs=49.9

Q ss_pred             CeEEEEECCC-Ch-------HHHHHHHHHHcCCEEEEEeCCCCCHHHHhcc-CCCEEEeCCCCCCCC----CC-hhHHHH
Q 031223           25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DS-GISLQT   90 (163)
Q Consensus        25 ~~Ilvid~~~-~~-------~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~-~~dgvvl~GG~~~~~----d~-~~~~~~   90 (163)
                      |+|+|||... ..       ...+...|++.|+++............+... ++|.||+.=.  .|.    .. -++.+.
T Consensus         1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~~~~~~~G~~ll~~   78 (755)
T 2vyc_A            1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEHPDEHQNVRQLIGK   78 (755)
T ss_dssp             CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCcccccccHHHHHHH
Confidence            4899998764 44       5668889999999887664321112223333 4999998422  122    01 124566


Q ss_pred             HHHhCCCCCEEEEehHHH
Q 031223           91 VLELGPTVPLFGVCMGLQ  108 (163)
Q Consensus        91 i~~~~~~~PvLGIC~G~Q  108 (163)
                      ||+...++||+-+.-=.+
T Consensus        79 iR~~~~~iPIi~lTa~~~   96 (755)
T 2vyc_A           79 LHERQQNVPVFLLGDREK   96 (755)
T ss_dssp             HHHHSTTCCEEEEECHHH
T ss_pred             HHHhCCCCCEEEEecCCc
Confidence            666555799998876544

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=83.21  E-value=1.5  Score=35.13  Aligned_cols=79  Identities=14%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ..+|+|||........+.+.|++.|+++..........+.+....||.||+ -= ..|. +--++.+.+++.....|++-
T Consensus         5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvll-D~-~mp~~~G~~~~~~lr~~~~~~pii~   82 (394)
T 3eq2_A            5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVIC-DL-RMPQIDGLELIRRIRQTASETPIIV   82 (394)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEE-CC-CSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEE-cC-CCCCCCHHHHHHHHHhhCCCCcEEE
Confidence            468999997655666788889988987643221100122233357998877 11 1122 12234556666555688875


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +-
T Consensus        83 lt   84 (394)
T 3eq2_A           83 LS   84 (394)
T ss_dssp             C-
T ss_pred             EE
Confidence            54

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=83.01  E-value=6.8  Score=29.25  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=42.0

Q ss_pred             CCeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        24 ~~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      +.+|.+|-.  .+.|..    .+.+.+++.|+.+.+...+ .+.+       .+...++||||+.+..     .....+.
T Consensus         5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~-----~~~~~~~   78 (291)
T 3l49_A            5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG-RNDQTQVSQIQTLIAQKPDAIIEQLGN-----LDVLNPW   78 (291)
T ss_dssp             TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHCCSEEEEESSC-----HHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhhhHHH
Confidence            346777733  222332    3566777899999888654 2221       1223489999997652     1122334


Q ss_pred             HHHh-CCCCCEEEE
Q 031223           91 VLEL-GPTVPLFGV  103 (163)
Q Consensus        91 i~~~-~~~~PvLGI  103 (163)
                      ++++ +.++|+.-+
T Consensus        79 ~~~~~~~~iPvV~~   92 (291)
T 3l49_A           79 LQKINDAGIPLFTV   92 (291)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHCCCcEEEe
Confidence            4443 456887654

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=82.96  E-value=1.5  Score=33.45  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             CCeEEEEECC--CChHHH----HHHHHHHcCCEEEEEeCCC-CCH-------HHHhccCCCEEEeCCC
Q 031223           24 KNPIIVIDNY--DSFTYN----LCQYMGELGYHFEVYRNDE-LTV-------EELKRKNPRGVLISPG   77 (163)
Q Consensus        24 ~~~Ilvid~~--~~~~~~----~~~~l~~~G~~~~v~~~~~-~~~-------~~~~~~~~dgvvl~GG   77 (163)
                      +.+|.+|-..  +.|-..    +.+++++.|+.+.+...+. .+.       +.+...++||||+.+.
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~   70 (297)
T 3rot_A            3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP   70 (297)
T ss_dssp             CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred             eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            4568887433  234333    5567777899998876431 121       2222358999999765

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=82.87  E-value=3.1  Score=31.24  Aligned_cols=53  Identities=11%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCH-------HHHhccCCCEEEeCCC
Q 031223           24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG   77 (163)
Q Consensus        24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~-------~~~~~~~~dgvvl~GG   77 (163)
                      +.+|.++-.  .+.|...    +.+++++.|+.+.+.... .+.       +.+...++||||+.+.
T Consensus         2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~   67 (290)
T 2fn9_A            2 KGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ-NDTAKESAHFDAIIAAGYDAIIFNPT   67 (290)
T ss_dssp             -CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             ceEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEecC
Confidence            345766632  2234333    556777889998887653 222       1222358999999764

>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*

Probab=82.75  E-value=6.8  Score=28.37  Aligned_cols=34  Identities=9%  Similarity=0.071  Sum_probs=22.2

Q ss_pred             CCeEEEEECC-CChHHHHHH----HHHHcCCEEEEEeCC
Q 031223           24 KNPIIVIDNY-DSFTYNLCQ----YMGELGYHFEVYRND   57 (163)
Q Consensus        24 ~~~Ilvid~~-~~~~~~~~~----~l~~~G~~~~v~~~~   57 (163)
                      .++|+||..- .+++..+.+    .+++.|.+++++...
T Consensus         6 mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~   44 (211)
T 1ydg_A            6 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR   44 (211)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            3689999642 245665554    445578999888754

>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...

Probab=82.67  E-value=3.6  Score=28.01  Aligned_cols=79  Identities=10%  Similarity=0.026  Sum_probs=42.9

Q ss_pred             CeEEEEEC-CCChHHHHHHH----HHHcCCEEEEEeCCCCCHHHHhccC-CCEEEeCCCCCC-CCC---ChhHHHHHHHh
Q 031223           25 NPIIVIDN-YDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGA-PQD---SGISLQTVLEL   94 (163)
Q Consensus        25 ~~Ilvid~-~~~~~~~~~~~----l~~~G~~~~v~~~~~~~~~~~~~~~-~dgvvl~GG~~~-~~d---~~~~~~~i~~~   94 (163)
                      |+|+|+-. ..+++..+++.    +.+.|+++++++..+.+.+++.  + +|.||+ |.|-- ...   ...+..++.++
T Consensus         1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~-~~p~y~~g~~~~p~~~~~fl~~l   77 (147)
T 1f4p_A            1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLF--EGFDLVLL-GCSTWGDDSIELQDDFIPLFDSL   77 (147)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEE-EECEECSSSCEECTTTHHHHHTG
T ss_pred             CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEE-EeCCCCCCCcCCChhHHHHHHHH
Confidence            46777732 22356555554    4556888888875433333333  6 899988 44321 112   22344555543


Q ss_pred             ----CCCCCEEEEehH
Q 031223           95 ----GPTVPLFGVCMG  106 (163)
Q Consensus        95 ----~~~~PvLGIC~G  106 (163)
                          -.++++.-+|.|
T Consensus        78 ~~~~l~~k~~~v~~~g   93 (147)
T 1f4p_A           78 EETGAQGRKVACFGCG   93 (147)
T ss_dssp             GGSCCTTCEEEEEEEE
T ss_pred             HhcccCCCEEEEEeec
Confidence                246777766654

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=82.01  E-value=5.7  Score=29.73  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             CCeEEEEEC--CCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCCCCCCCCChhHHHH
Q 031223           24 KNPIIVIDN--YDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPGPGAPQDSGISLQT   90 (163)
Q Consensus        24 ~~~Ilvid~--~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG~~~~~d~~~~~~~   90 (163)
                      ..+|.++-.  .+.|...    +.+.+++.|+.+.+...+. +.+       .+...++||||+.+...  ...   .+.
T Consensus         8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~--~~~---~~~   81 (293)
T 3l6u_A            8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN-SRISEREQILEFVHLKVDAIFITTLDD--VYI---GSA   81 (293)
T ss_dssp             -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHHHHTTCSEEEEECSCT--TTT---HHH
T ss_pred             CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCh--HHH---HHH
Confidence            346777733  2234333    5567778899998887542 221       12235899999976521  111   223


Q ss_pred             HHHh-CCCCCEEEE
Q 031223           91 VLEL-GPTVPLFGV  103 (163)
Q Consensus        91 i~~~-~~~~PvLGI  103 (163)
                      ++++ +.++|+.-+
T Consensus        82 ~~~~~~~~iPvV~~   95 (293)
T 3l6u_A           82 IEEAKKAGIPVFAI   95 (293)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHcCCCEEEe
Confidence            3332 356777655

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=81.26  E-value=13  Score=31.05  Aligned_cols=55  Identities=11%  Similarity=0.054  Sum_probs=38.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHh--------------ccCCCEEEeCCCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGP   78 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~--------------~~~~dgvvl~GG~   78 (163)
                      ..+|+||-.+.+-...+++.|.+.|+.+.+.+..... .+.+.              -.++|.||+|+|-
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi   91 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAI   91 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTS
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCC
Confidence            3689999998777767899999999999887643211 11111              0258999999885

>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}

Probab=81.03  E-value=5.4  Score=32.52  Aligned_cols=77  Identities=16%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCeEEEEECCCC--h---HHHHHHHHHHcCCEEEEEeCCCC----------------------CHHHHhccCCCEEEeCC
Q 031223           24 KNPIIVIDNYDS--F---TYNLCQYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLISP   76 (163)
Q Consensus        24 ~~~Ilvid~~~~--~---~~~~~~~l~~~G~~~~v~~~~~~----------------------~~~~~~~~~~dgvvl~G   76 (163)
                      -.+|+||--...  .   ...+.+||.+.|+++.+-+....                      +.+++ ..++|.+|..|
T Consensus        38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lG  116 (365)
T 3pfn_A           38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLG  116 (365)
T ss_dssp             CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEES
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEc
Confidence            457889843222  2   44588999999987765321000                      00111 13689999999


Q ss_pred             CCCCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           77 GPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        77 G~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                      |-+      .+....+.+ ...+|++||=.|.
T Consensus       117 GDG------T~L~aa~~~~~~~~PvlGiN~G~  142 (365)
T 3pfn_A          117 GDG------TLLYASSLFQGSVPPVMAFHLGS  142 (365)
T ss_dssp             STT------HHHHHHHHCSSSCCCEEEEESSS
T ss_pred             ChH------HHHHHHHHhccCCCCEEEEcCCC
Confidence            954      356666665 5679999999874

>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*

Probab=80.87  E-value=2.6  Score=27.50  Aligned_cols=79  Identities=13%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHc-CCEEEEEeCCCC-CHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHh-CCCCC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLEL-GPTVP   99 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~-G~~~~v~~~~~~-~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-~~~~P   99 (163)
                      +++|+|+|....+...+.+.|... |+.+.....+.. ..+.+....+|.+++--.  .+. +.-++.+.+++. ....|
T Consensus         2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~~   79 (130)
T 1dz3_A            2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGFEHQPN   79 (130)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCCE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCc
Confidence            468999987555566677888876 665432222210 112222347898887322  111 222345556653 34567


Q ss_pred             EEEEe
Q 031223          100 LFGVC  104 (163)
Q Consensus       100 vLGIC  104 (163)
                      ++-+.
T Consensus        80 ii~ls   84 (130)
T 1dz3_A           80 VIMLT   84 (130)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=80.59  E-value=6.3  Score=26.37  Aligned_cols=81  Identities=10%  Similarity=0.140  Sum_probs=44.2

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHHhc-------cCCCEEEeCCCCCCCCCC-hhHHHHHH
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKR-------KNPRGVLISPGPGAPQDS-GISLQTVL   92 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~~~-------~~~dgvvl~GG~~~~~d~-~~~~~~i~   92 (163)
                      ..++|+|+|........+.+.|+..|....+......  ....+..       ..+|.||+-=.  .+... -++.+.++
T Consensus         7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~--lp~~~g~~l~~~l~   84 (149)
T 1i3c_A            7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN--LPKKDGREVLAEIK   84 (149)
T ss_dssp             CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC--CSSSCHHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC--CCCCcHHHHHHHHH
Confidence            3468999997655666788888888874333322211  1122221       25898887211  11212 23455566


Q ss_pred             HhC--CCCCEEEEeh
Q 031223           93 ELG--PTVPLFGVCM  105 (163)
Q Consensus        93 ~~~--~~~PvLGIC~  105 (163)
                      +..  ...|++-+.-
T Consensus        85 ~~~~~~~~piiils~   99 (149)
T 1i3c_A           85 QNPDLKRIPVVVLTT   99 (149)
T ss_dssp             HCTTTTTSCEEEEES
T ss_pred             hCcCcCCCeEEEEEC
Confidence            532  5689887753

>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1

Probab=80.58  E-value=0.15  Score=28.21  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.5

Q ss_pred             CEEEEehHHHHHHHHhC
Q 031223           99 PLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (163)
                      -..|.|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T 1ehs_A           31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            44688999999987655

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=80.48  E-value=5.6  Score=26.11  Aligned_cols=79  Identities=16%  Similarity=0.287  Sum_probs=43.7

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhc-----cCCCEEEeCCCCCCCCCCh-hHHHHHHH-hC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG   95 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~-----~~~dgvvl~GG~~~~~d~~-~~~~~i~~-~~   95 (163)
                      .++|+|+|....+...+.+.|+..|+. +..........+.+..     ..||.+++-=.  .|...+ .+.+.+++ ..
T Consensus         2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~--mp~~~G~~~~~~lr~~~~   79 (133)
T 2r25_B            2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLG   79 (133)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSC
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCC--CCCCChHHHHHHHHhhcC
Confidence            367999997655666788888888875 4333211001222222     46898876211  122222 34556665 34


Q ss_pred             CCCCEEEEe
Q 031223           96 PTVPLFGVC  104 (163)
Q Consensus        96 ~~~PvLGIC  104 (163)
                      ...|++-+.
T Consensus        80 ~~~~ii~lt   88 (133)
T 2r25_B           80 YTSPIVALT   88 (133)
T ss_dssp             CCSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            467888765

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=80.42  E-value=12  Score=28.42  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             CCeEEEE--ECCCChHHH----HHHHHHHcCCEEEEEeCCCCCHH-------HHhccCCCEEEeCCC
Q 031223           24 KNPIIVI--DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISPG   77 (163)
Q Consensus        24 ~~~Ilvi--d~~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~-------~~~~~~~dgvvl~GG   77 (163)
                      +.+|.++  +....|-..    +.+++++.|+.+.+...+ .+.+       .+...++||||+.+.
T Consensus         3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiIi~~~   68 (330)
T 3uug_A            3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD-DDIPNQLSQIENMVTKGVKVLVIASI   68 (330)
T ss_dssp             CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred             CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3457766  333344333    556777899999887654 2221       122348999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	2e-24
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	7e-24
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	8e-16
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	2e-14
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	2e-13
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	1e-10
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	2e-07

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 91.9 bits (227), Expect = 2e-24
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQD 83
            ++IDNYDSF YN+ Q +GELG +  V RNDE++++ ++R +P  ++ISPGPG     +D
Sbjct: 4   TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKRED 63

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 127
            G+SL  +  LG   P+ GVC+G Q IG AFG KI R+      
Sbjct: 64  IGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHG 107

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 89.9 bits (222), Expect = 7e-24
 Identities = 41/116 (35%), Positives = 72/116 (62%), Gaps = 4/116 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
           I+++DN DSFTYNL   +   G+   +YRN    E+ +E L+      +++SPGPG P +
Sbjct: 3   ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 62

Query: 84  SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
           +G   + +  L   +P+ G+C+G Q I EA+GG++ ++   ++HGK+S + +D +G
Sbjct: 63  AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHDGEG 117

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (170), Expect = 8e-16
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 5   EAVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL 64
           +            KK       ++  D       N+ + + + G    +      + E++
Sbjct: 20  QGSWTLTGGLPQAKKEDELPFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQT-SAEDV 76

Query: 65  KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 123
            + NP G+ +S GPG P     ++  + + L   +P+FG+C+G Q +  A G K V+   
Sbjct: 77  LKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 136

Query: 124 GVMHGKS 130
           G   G  
Sbjct: 137 GHHGGNH 143

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 23  NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
           +K+ I+++D    +T  + + + ELG + E++  D  T  +++  NP G+++S GP +  
Sbjct: 4   HKHRILILDFGSQYTQLVARRVRELGVYCELWAWDV-TEAQIRDFNPSGIILSGGPESTT 62

Query: 83  DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 142
           +              VP+FGVC G+Q +    GG +  S           V  D     G
Sbjct: 63  EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRG 122

Query: 143 LLAGLSKYVSISCYNIQCFAH 163
           +   L+               
Sbjct: 123 IEDALTADGKPLLDVWMSHGD 143

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.3 bits (150), Expect = 2e-13
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I+++DN   + + + + +  LG   ++  N    +EE+K  NP+G++ S GP        
Sbjct: 3   IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGPSLENTGNC 61

Query: 87  SLQTVLELGPTVPLFGVCMGLQCIGEAFG 115
                      VP+ G+C+G Q I + FG
Sbjct: 62  EKVLEHYDEFNVPILGICLGHQLIAKFFG 90

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 27  IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
           I V+DN   +T+   + + ELG   ++  ND   ++  +     G+++S G     +   
Sbjct: 4   IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 60

Query: 87  SLQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
            L +V +       P+ G+C+G Q I   FG  +V++           V + E    GL 
Sbjct: 61  KLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVMHSENIFGGLP 120

Query: 145 AGLSKYVSISCY 156
           + ++ + + +  
Sbjct: 121 SEITVWENHNDE 132

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 32/169 (18%)

Query: 24  KNPIIVI-------DNYDSFTY-----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRG 71
           K PII I           ++       +  +Y+   G      R D    +         
Sbjct: 2   KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSIN 61

Query: 72  VLISPGPGAPQDSGISLQTVLEL----------GPTVPLFGVCMGLQCIGEAFGGKIVRS 121
            ++ PG           +               G   P++G C+G + +     G+ + +
Sbjct: 62  GILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLT 121

Query: 122 PLGVMHGKSSLVYYDEKG---------EDGLLAGLSKYVSISCYNIQCF 161
                   +  + +                LL  L+     + ++    
Sbjct: 122 ATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSL 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.97
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.97
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.97
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.96
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.95
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.94
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.94
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.73
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.69
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.67
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.66
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.65
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.62
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.57
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.43
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.22
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.18
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.18
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	98.86
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	98.72
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	98.66
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	98.55
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	98.51
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	98.41
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	98.41
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	98.16
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	98.11
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	97.64
d1z0sa1	249	Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa	96.86
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	96.11
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	96.06
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	96.03
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	95.91
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	95.77
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	95.69
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	95.57
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	95.54
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	95.34
d1t0ba_	240	GK2113 homologue {Bacillus stearothermophilus [Tax	95.34
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	95.24
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	95.23
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	95.13
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	95.01
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	94.85
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	94.36
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	94.27
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	94.19
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	94.09
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	93.95
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	93.86
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	93.84
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	93.38
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.27
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	93.16
d1ycga1	149	Nitric oxide reductase C-terminal domain {Moorella	93.1
d1u0ta_	302	Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob	92.56
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	91.59
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	91.53
d1ydga_	201	Trp repressor binding protein WrbA {Deinococcus ra	91.44
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	90.95
d2a5la1	196	Trp repressor binding protein WrbA {Pseudomonas ae	90.79
d2arka1	184	Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}	90.33
d2nqra3	149	MoeA, central domain {Escherichia coli [TaxId: 562	90.33
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	90.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.84
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	89.65
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.33
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	88.14
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	87.23
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	86.94
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	86.73
d1uz5a3	148	MoeA, central domain {Archaeon Pyrococcus horikosh	86.49
d2fz5a1	137	Flavodoxin {Megasphaera elsdenii [TaxId: 907]}	86.27
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	84.48
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	84.46
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	83.96
d2gk3a1	246	Putative cytoplasmic protein STM3548 {Salmonella t	83.01
d2g2ca1	163	Putative molybdenum cofactor biosynthesis protein	82.6
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	81.77
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	81.39
d1wu2a3	144	MoeA, central domain {Pyrococcus horikoshii, PH164	81.33
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	81.22
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	81.16
d1jlja_	169	Gephyrin N-terminal domain {Human (Homo sapiens) [	81.06
d1ehsa_	48	Heat-stable enterotoxin B {Escherichia coli [TaxId	80.58
d1s8na_	190	Probable two-component system transcriptional regu	80.28

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=1.6e-31  Score=201.37  Aligned_cols=136  Identities=40%  Similarity=0.662  Sum_probs=113.7

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh--HHHHH-HHhCCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTV-LELGPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~--~~~~i-~~~~~~~PvL  101 (163)
                      .|||||||+|||+++++++|+++|+++++++++..+++++...++||||++|||+++.+...  ....+ +.++.++|+|
T Consensus         2 ~~~liiD~~dsft~Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiL   81 (195)
T d1qdlb_           2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPIL   81 (195)
T ss_dssp             CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEE
T ss_pred             CEEEEEECCCchHHHHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEE
Confidence            36999999999999999999999999999998766788887678999999999999987543  22333 3468899999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeecee
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      |||+|||+|+.++||+|.+.+ ..++|....+.........+|.++++.++++++|++.+
T Consensus        82 GIClG~Qll~~~~G~~v~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~h~~~~  140 (195)
T d1qdlb_          82 GVCLGHQAIGYAFGAKIRRAR-KVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVV  140 (195)
T ss_dssp             EETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEE
T ss_pred             EeehhhhhhhhccCCEEEeec-ccccccccccccccccccccccCCCccceeeecceeee
Confidence            999999999999999999987 34566655555554345679999999999999999876

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.97  E-value=3.6e-30  Score=194.16  Aligned_cols=133  Identities=32%  Similarity=0.646  Sum_probs=111.8

Q ss_pred             eEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC---HHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        26 ~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~---~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      +|+||||+|||+++++++|+++|+++++++++...   .+++...++|+|+++|||+++.+......+.+.+++++|+||
T Consensus         2 niliiD~~DSFt~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLG   81 (192)
T d1i7qb_           2 DILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIG   81 (192)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhhhcCccEEe
Confidence            69999999999999999999999999999976321   334445689999999999998876654444444678899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||+|||+||.++||+|.+.+ ..++|+...+...   ++++|.+.++.+.++++|++.++
T Consensus        82 IClG~Q~la~~~Gg~v~~~~-~~~~g~~~~~~~~---~~~l~~~~~~~~~~~~~h~~~~~  137 (192)
T d1i7qb_          82 ICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHD---GEGMFAGMANPLPVARYHSLVGS  137 (192)
T ss_dssp             ETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEEEC---CCGGGTTCCSSEEEEEEEEEEEE
T ss_pred             eeHHHHHHHHHCCCeEEECC-cccccceEEEeec---CCCceeeccccceEEeecccccc
Confidence            99999999999999999998 5678887666554   56799999999999999999875

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.1e-30  Score=194.17  Aligned_cols=131  Identities=22%  Similarity=0.318  Sum_probs=108.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChh-HHHHHHHh-CCCCCEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-SLQTVLEL-GPTVPLFG  102 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~-~~~~i~~~-~~~~PvLG  102 (163)
                      +||+|||++++|++++.++|+++|+++++++++ .+.+++.  ++||||++||++++.+... ...+++.+ ++++|+||
T Consensus         2 ~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~~d-~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~PilG   78 (196)
T d2a9va1           2 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILG   78 (196)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEE
T ss_pred             CEEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC-CCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhhcCceEEE
Confidence            589999999999999999999999999999976 4555654  7999999999988776543 34444443 57899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceec
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      ||+|||+|+.++||++.+.. ....++. .+....  .+++|+++++.+.++++|++.|.
T Consensus        79 IC~G~Qll~~~~gg~~~~~~-~~~~~~~-~~~~~~--~~~l~~~~~~~~~~~~~H~~~v~  134 (196)
T d2a9va1          79 ICVGAQFIALHFGASVVKAK-HPEFGKT-KVSVMH--SENIFGGLPSEITVWENHNDEII  134 (196)
T ss_dssp             ETHHHHHHHHHTTCEEEEEE-EEEEEEE-EEEESC--CCGGGTTCCSEEEEEEEEEEEEE
T ss_pred             eehhhhhhhhcccccccccc-ccccccc-eEEEec--CCccccCCCCceEEEecceeEEE
Confidence            99999999999999999887 4455665 445443  68999999999999999999874

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.6e-28  Score=182.32  Aligned_cols=134  Identities=22%  Similarity=0.405  Sum_probs=105.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      .+.||+|||+++++++++.++|+++|+++++++++ .+.+++....+||++++|||+++.+........+.+++++|+||
T Consensus         4 ~~~kI~IiD~G~~~~~~I~r~lr~lg~~~~I~~~d-~~~~~~~~~~~~giils~gp~~~~~~~~~~~~~~~~~~~~PiLG   82 (205)
T d1gpma2           4 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFG   82 (205)
T ss_dssp             TSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEE
T ss_pred             ccCeEEEEECCchHHHHHHHHHHHCCCEEEEECCC-CCHHHHhhcCCCeEEecCCCCccchhhhhhHHHHHHhCCCCEEE
Confidence            34589999999999999999999999999999987 56666666689999999999998776543222222578899999


Q ss_pred             EehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccC--------CCCceEEeeeeecee
Q 031223          103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG--------LSKYVSISCYNIQCF  161 (163)
Q Consensus       103 IC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~--------lp~~~~v~~~H~~~v  161 (163)
                      ||+|||+||.++||++.+.+ .+++|+.......   ...++.+        .+..+.++++|++.+
T Consensus        83 IClG~Qlla~~~Gg~v~~~~-~~~~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~  145 (205)
T d1gpma2          83 VCYGMQTMAMQLGGHVEASN-EREFGYAQVEVVN---DSALVRGIEDALTADGKPLLDVWMSHGDKV  145 (205)
T ss_dssp             ETHHHHHHHHHHTCEEECCS-SCEEEEEEEEECS---CCTTTTTCCSEECTTSCEEEEEEEEECSEE
T ss_pred             eccchhhhhhhcCCcccccc-ccccCcceecccc---ccccccccccccccCCccceeeeccccccc
Confidence            99999999999999999998 5789998554433   2333333        344577889998765

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=1.9e-27  Score=183.84  Aligned_cols=136  Identities=14%  Similarity=0.227  Sum_probs=107.2

Q ss_pred             CCCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCC--HHHHhccCCCEEEeCCCCCCCCCChh------HHHHHHH
Q 031223           23 NKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE   93 (163)
Q Consensus        23 ~~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dgvvl~GG~~~~~d~~~------~~~~i~~   93 (163)
                      .+|||+||+|.+. ..+.+.++|++.|++++++.....+  ++++  .+||++||+|||+++++...      ..+++++
T Consensus         2 ~~mrvli~qh~~~e~~G~~~~~l~~~g~~~~~~~~~~~~~~p~~l--~~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~   79 (230)
T d1o1ya_           2 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEE   79 (230)
T ss_dssp             CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCcHHHHHHHHHCCCEEEEEECCCCCcCCcch--hhCCEEEEcCCCcccccchhhhhhHHHHHHHHH
Confidence            3689999988654 3668999999999999998754211  1222  37999999999999887532      3566666


Q ss_pred             h-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeeeeceecC
Q 031223           94 L-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYNIQCFAH  163 (163)
Q Consensus        94 ~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H~~~v~~  163 (163)
                      + ++++|+||||+|||+||.++||+|.+.+.+++.|+. .+....  ++++|+++|+++.+++||+|.+++
T Consensus        80 ~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~~~~~~~-~~~~~~--~~~l~~~~~~~~~~~~~H~d~~~l  147 (230)
T d1o1ya_          80 ILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWY-FVEKVS--DNKFFREFPDRLRVFQWHGDTFDL  147 (230)
T ss_dssp             HHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEE-EEEECC--CCGGGTTSCSEEEEEEEESEEECC
T ss_pred             HHHhcceEEEeecCHHHHHHHhcccccccccccccccc-cccccc--chhhhccCCccceEEEecceeeee
Confidence            3 678999999999999999999999998766666665 444443  689999999999999999997653

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7.2e-27  Score=180.46  Aligned_cols=110  Identities=23%  Similarity=0.414  Sum_probs=96.0

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvL  101 (163)
                      ...+|+|||++..+.  +.++|+++|+.+++++++ .+.+++...+||||||||||++|.+.+...+.+++ ++.++|||
T Consensus        38 ~~~~i~~~D~G~k~~--ilr~l~~~~~~~~v~p~~-~~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPIL  114 (228)
T d1a9xb2          38 LPFHVVAYDFGAKRN--ILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVF  114 (228)
T ss_dssp             CCEEEEEEESSCCHH--HHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEE
T ss_pred             CcceEEEEeCCCcHH--hHhHHHhcCceEEEcCCC-CCHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhCCCCEE
Confidence            346899999976654  669999999999999987 67888887899999999999999998877788887 57889999


Q ss_pred             EEehHHHHHHHHhCCeeeeCCCcccccceeEEEeC
Q 031223          102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD  136 (163)
Q Consensus       102 GIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~  136 (163)
                      |||+|||+|+.++||+|.++. ..++|..+++...
T Consensus       115 GIClG~Qlia~~~Gg~v~k~~-~~~~G~~~~~~~~  148 (228)
T d1a9xb2         115 GICLGHQLLALASGAKTVKMK-FGHHGGNHPVKDV  148 (228)
T ss_dssp             EETHHHHHHHHHTTCCEEEEE-EEEEEEEEEEEET
T ss_pred             EEEcChHHHHHHcCCceeecc-ccccccccccccc
Confidence            999999999999999999998 4678988777654

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=6.2e-19  Score=132.14  Aligned_cols=128  Identities=15%  Similarity=0.113  Sum_probs=84.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHH-hCCCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVP   99 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~-~~~~~P   99 (163)
                      ++|.|||.. +...+..++|+++|+++.+++.    .+++.  ++|+|||+||+.++...    ..+.+.|++ .++++|
T Consensus         2 ~~igv~~~~-G~~~~~~~al~~~G~~~~~i~~----~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~p   74 (195)
T d2nv0a1           2 LTIGVLGLQ-GAVREHIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP   74 (195)
T ss_dssp             CEEEEECSS-SCCHHHHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cEEEEEecC-ChHHHHHHHHHHCCCcEEEECC----HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcce
Confidence            689999984 4445678999999999998853    35665  79999999985432111    123566666 478899


Q ss_pred             EEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeC------CCCcCccccCCCCceEEeeeeeceec
Q 031223          100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD------EKGEDGLLAGLSKYVSISCYNIQCFA  162 (163)
Q Consensus       100 vLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~------~~~~~~lf~~lp~~~~v~~~H~~~v~  162 (163)
                      +||||+|||+|++++++...+....... .  .....      ....+.++++++..+.++.+|++.+.
T Consensus        75 ilGIC~G~Qll~~~~~g~~~~~lg~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~  140 (195)
T d2nv0a1          75 MFGTCAGLIILAKEIAGSDNPHLGLLNV-V--VERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHIL  140 (195)
T ss_dssp             EEEETHHHHHHSBCCC----CCCCCSCE-E--EECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEE
T ss_pred             eeeccccHHHHHhhhccccccccccccc-c--cccccccccceeeeeeecccCCCCCceEEEEeeeEEE
Confidence            9999999999999988754443211111 1  01110      01135567888888999999998763

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-17  Score=128.71  Aligned_cols=124  Identities=14%  Similarity=0.227  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCCCChh------H-HHHHHH--hCCCCCEEEEeh
Q 031223           37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGI------S-LQTVLE--LGPTVPLFGVCM  105 (163)
Q Consensus        37 ~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~d~~~------~-~~~i~~--~~~~~PvLGIC~  105 (163)
                      ..+++++++..|+.+.+++++ .+.+++..  ...||||++||+.+......      . ...+.+  .++++|+||||+
T Consensus        27 ~~sYvk~ie~aGa~vvpi~~~-~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~  105 (288)
T d1l9xa_          27 AASYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCL  105 (288)
T ss_dssp             EHHHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETH
T ss_pred             HHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcH
Confidence            446889999999999999876 34455432  36899999999766543321      1 111222  257799999999


Q ss_pred             HHHHHHHHhCCeeeeCCCcccccceeEEEeCC-CCcCccccCCCC--------ceEEeeeeeceec
Q 031223          106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSK--------YVSISCYNIQCFA  162 (163)
Q Consensus       106 G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~-~~~~~lf~~lp~--------~~~v~~~H~~~v~  162 (163)
                      |||+|+.++||++.+.. ...++...++.... ...+.+|..+|.        ...++.+|+++|+
T Consensus       106 G~Qll~~~~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~  170 (288)
T d1l9xa_         106 GFEELSLLISGECLLTA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLS  170 (288)
T ss_dssp             HHHHHHHHHHSSCCCEE-EEEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECB
T ss_pred             HHHHHHHHhCCEeeccc-cCcCCcceeEEecCCCccceeEeecccchhhhccCCceEEEecccEEE
Confidence            99999999999988765 23445444444432 224566666653        3468889999873

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=3.6e-18  Score=128.45  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=84.1

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC----hhHHHHHHHh-C
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLEL-G   95 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~----~~~~~~i~~~-~   95 (163)
                      +..+|||.|||.. ++..+..++|+++|+++++++.    .+++.  ++|+|||+||+.+....    ..+.++|+++ +
T Consensus         3 ~~~~mkIgii~~~-Gn~~s~~~al~~~G~~~~~v~~----~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~   75 (202)
T d1q7ra_           3 FQSNMKIGVLGLQ-GAVREHVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAA   75 (202)
T ss_dssp             CCCCCEEEEESCG-GGCHHHHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccCCEEEEEECC-CCHHHHHHHHHHCCCcEEEECC----HHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhcc
Confidence            4567999999884 3567788999999999998852    45665  89999999986543211    1236677774 7


Q ss_pred             CCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCC---------CCcCccccCCCCceEEeeeeecee
Q 031223           96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE---------KGEDGLLAGLSKYVSISCYNIQCF  161 (163)
Q Consensus        96 ~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~---------~~~~~lf~~lp~~~~v~~~H~~~v  161 (163)
                      +++|+||||+|||+|+...++...+     +.|+. .+.+..         ...+..+.+++..+..+.+|++.+
T Consensus        76 ~gkPiLGIClG~Qll~~~~~~~~~~-----~lg~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (202)
T d1q7ra_          76 AGKPMFGTCAGLILLAKRIVGYDEP-----HLGLM-DITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHI  144 (202)
T ss_dssp             TTCCEEEETTHHHHHEEEEESSCCC-----CCCCE-EEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEE
T ss_pred             ccceeeeeehhhHHhhhhcccccee-----ecccc-cccccccccccccccceeccccccccCCcceEEEeeccc
Confidence            8999999999999998765443221     12221 111110         002334555666677777777655

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=1.9e-16  Score=124.83  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCEEEEE--eCCC---------------CCHHHHhccCCCEEEeCCCCCCCCCC
Q 031223           25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVY--RNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~~---~~~~~~~l~~~G~~~~v~--~~~~---------------~~~~~~~~~~~dgvvl~GG~~~~~d~   84 (163)
                      ++|+|++.-..-   ...+.+.|......+++.  ....               .+.+++...+|||+||+|+|.+..+.
T Consensus        20 L~I~iLNlMP~k~~TE~qf~rll~~~~~qv~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~fDglIITGap~~~~~f   99 (281)
T d2ghra1          20 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSF   99 (281)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTSSSSCEEEEEECCCC------------CCEECHHHHTTCCEEEEEECCCSCTTSCG
T ss_pred             eEEEEEecCCcchhhHHHHHHHhcCCcceEEEEEeeecccccCCccHHHHHhcchhHHHhhcccCCEEEEeCCCCCcccc
Confidence            689999875432   223566665544444433  2110               23455666689999999999876432


Q ss_pred             h------hHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEEeeee
Q 031223           85 G------ISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSISCYN  157 (163)
Q Consensus        85 ~------~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v~~~H  157 (163)
                      +      ++.++++.+ ...+|+||||+|+|+++.++||.+.+...+...|......+..  .++|++++++.|.+.++|
T Consensus       100 edv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~~~~~~--~~pL~~g~~d~f~~p~Sr  177 (281)
T d2ghra1         100 EEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQ--HVKLLQGFDELFFAPHSR  177 (281)
T ss_dssp             GGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCS--SCGGGTTCCSEEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEEeeccC--CChhccCCcchhheeeee
Confidence            2      245555553 4679999999999999999999887664345567653333333  689999999999999998


Q ss_pred             ece
Q 031223          158 IQC  160 (163)
Q Consensus       158 ~~~  160 (163)
                      .-.
T Consensus       178 ~~~  180 (281)
T d2ghra1         178 HTE  180 (281)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            643

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=5.4e-18  Score=126.90  Aligned_cols=87  Identities=18%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC------hhHHHHHHH-hCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~------~~~~~~i~~-~~~~   97 (163)
                      |||+|||++.++.+++.++|+++|..+..+.....+.++.  .++|+|||+ |+++..+.      ..+.+.|++ +.++
T Consensus         1 MKI~IiDyg~gN~~si~~al~~~g~~~~~~~~~~~~~~~~--~~~D~lIlP-G~G~f~~~~~~l~~~~~~~~i~~~~~~~   77 (200)
T d1k9vf_           1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRN--DLYDLLFIP-GVGHFGEGMRRLRENDLIDFVRKHVEDE   77 (200)
T ss_dssp             CEEEEECSSSSCCHHHHHHHHHHTTTSSSCEEEEESSSCS--CCCSEEEEC-CCSCHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHhccccccceEEEeCChHh--hccCeEEEc-ChHHHHHHHHhhhccccccccccccccc
Confidence            6899999988888999999998875432221110011122  379999995 44542221      123456666 4688


Q ss_pred             CCEEEEehHHHHHHHHh
Q 031223           98 VPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a~  114 (163)
                      +|+||||+|||+|+.+.
T Consensus        78 ~PiLGIClG~QlL~~~~   94 (200)
T d1k9vf_          78 RYVVGVCLGMQLLFEES   94 (200)
T ss_dssp             CEEEEETHHHHTTEEEE
T ss_pred             ceEEEEecceeEEeeec
Confidence            99999999999999764

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=1.8e-15  Score=111.34  Aligned_cols=82  Identities=18%  Similarity=0.314  Sum_probs=62.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCC------CCChhHHHHHHH-hCCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP------QDSGISLQTVLE-LGPT   97 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~------~d~~~~~~~i~~-~~~~   97 (163)
                      |||+|||++.++.+++.++|+++|+++++++.    .+++.  ++|++|++||+...      .+.. ....+.. ...+
T Consensus         1 Mki~IiD~G~gN~~si~~~l~~lg~~~~i~~~----~~~i~--~~d~lIlpG~g~~~~~~~~~~~~~-~~~~~~~~~~~g   73 (195)
T d1ka9h_           1 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD----PKAHE--EADLLVLPGQGHFGQVMRAFQESG-FVERVRRHLERG   73 (195)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS----TTSCS--SCSEEEECCCSCHHHHHHTTSSSC-THHHHHHHHHTT
T ss_pred             CEEEEEeCCCcHHHHHHHHHHHCCCeEEEECC----HHHHH--HHhhhhcCCCccccchhhhccccC-Cccccccccccc
Confidence            68999999999999999999999999998853    23444  78999998876421      1112 2233333 4678


Q ss_pred             CCEEEEehHHHHHHHH
Q 031223           98 VPLFGVCMGLQCIGEA  113 (163)
Q Consensus        98 ~PvLGIC~G~QlLa~a  113 (163)
                      +|+||||+|||+|+..
T Consensus        74 ~pilGiClG~qll~~~   89 (195)
T d1ka9h_          74 LPFLGICVGMQVLYEG   89 (195)
T ss_dssp             CCEEECTHHHHTTSSE
T ss_pred             chhhhhhhhhheeeec
Confidence            9999999999999864

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.43  E-value=2.6e-14  Score=107.46  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC---C---hhHHHHH-HHh-
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---S---GISLQTV-LEL-   94 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d---~---~~~~~~i-~~~-   94 (163)
                      .++|.||+.-+.+ .+..++|+++|++ +++...  .+.+++.  ++|+|||+||......   .   ....+.+ +.. 
T Consensus         2 ~ikIGvl~l~G~~-~~~~~al~~lg~~~~~v~~~--~~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~   76 (218)
T d2abwa1           2 EITIGVLSLQGDF-EPHINHFIKLQIPSLNIIQV--RNVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIH   76 (218)
T ss_dssp             CEEEEEECTTSCC-HHHHHHHHTTCCTTEEEEEE--CSHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcH-HHHHHHHHHcCCCceEEEEe--CCHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHH
Confidence            4789999985444 4556889998853 333332  2467776  8999999987432211   1   1122333 333 


Q ss_pred             CCCCCEEEEehHHHHHHHHhCCee
Q 031223           95 GPTVPLFGVCMGLQCIGEAFGGKI  118 (163)
Q Consensus        95 ~~~~PvLGIC~G~QlLa~a~Gg~v  118 (163)
                      ..++|+||||+|||+|+...++..
T Consensus        77 ~~gkPilGIC~G~QlL~~~~~~~~  100 (218)
T d2abwa1          77 VLKKPIWGTCAGCILLSKNVENIK  100 (218)
T ss_dssp             TSCCCEEEETHHHHHTEEEEECCC
T ss_pred             HcCCeEEEecHHHHHHHHhccCCc
Confidence            678999999999999988765443

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=4.3e-12  Score=97.89  Aligned_cols=92  Identities=17%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             CeEEEEE----CCCChHHHHHHHHH----HcCCEEEEEeCCCCCHHHH--h-ccCCCEEEeCCCCCCCCCChhHHHHHHH
Q 031223           25 NPIIVID----NYDSFTYNLCQYMG----ELGYHFEVYRNDELTVEEL--K-RKNPRGVLISPGPGAPQDSGISLQTVLE   93 (163)
Q Consensus        25 ~~Ilvid----~~~~~~~~~~~~l~----~~G~~~~v~~~~~~~~~~~--~-~~~~dgvvl~GG~~~~~d~~~~~~~i~~   93 (163)
                      .+|+++-    ..|+|. ++.++|+    +.+..+++...+...+++-  . ..++|||+++||.+....++++ ..++.
T Consensus         4 v~Ia~vGKY~~l~DaY~-Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~eGki-~ai~y   81 (258)
T d1s1ma1           4 VTIGMVGKYIELPDAYK-SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMI-TTARF   81 (258)
T ss_dssp             EEEEEEESSCSSGGGGH-HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHHH-HHHHH
T ss_pred             eEEEEEeCcCCCchhHH-hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcCCHHHHH-HHHHH
Confidence            4688883    334443 3445554    3566676665432112111  1 1489999999998866666654 34444


Q ss_pred             -hCCCCCEEEEehHHHHHHHHhCCee
Q 031223           94 -LGPTVPLFGVCMGLQCIGEAFGGKI  118 (163)
Q Consensus        94 -~~~~~PvLGIC~G~QlLa~a~Gg~v  118 (163)
                       .++++|+||||+|||+++..+..+|
T Consensus        82 ARen~iPfLGIClGmQ~avIE~ARnv  107 (258)
T d1s1ma1          82 ARENNIPYLGICLGMQVALIDYARHV  107 (258)
T ss_dssp             HHHTTCCEEEETHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHh
Confidence             3689999999999999998875444

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.18  E-value=6.7e-11  Score=91.75  Aligned_cols=135  Identities=17%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             CCCCeEEEEECCCC-hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC---hh-----------
Q 031223           22 NNKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GI-----------   86 (163)
Q Consensus        22 ~~~~~Ilvid~~~~-~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~---~~-----------   86 (163)
                      +.++||+||.+.++ .+.....+++..|++++.+...+.........+||+++|+||.+ ..|.   +.           
T Consensus         4 ~~kpkvaVl~~pGtNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFS-ygD~l~ag~~~a~~~~~~~~   82 (262)
T d1t3ta2           4 GARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFS-YGDVLGAGEGWAKSILFNHR   82 (262)
T ss_dssp             TCCCEEEEEECTTBCCHHHHHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCG-GGGTTSTTHHHHHHHHHSHH
T ss_pred             CCCCeEEEEeCCCCCcHHHHHHHHHHcCCceEEEEeeecccCcccccccceEEEecccc-ccccccchhHHHhhhhhhhH
Confidence            34579999998877 47778899999999999887531100111123799999999854 3332   11           


Q ss_pred             HHHHHHH-h-CCCCCEEEEehHHHHHHHH--h-CC-----eeeeCCCc-ccccceeEEEeCCCCcCccccCCC-CceEEe
Q 031223           87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA--F-GG-----KIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLS-KYVSIS  154 (163)
Q Consensus        87 ~~~~i~~-~-~~~~PvLGIC~G~QlLa~a--~-Gg-----~v~~~~~~-~e~G~~~~i~~~~~~~~~lf~~lp-~~~~v~  154 (163)
                      ....+.+ + +.++|+||||.|+|+|.+.  + .+     +..+...+ .+--|. .+.+... .+..|+++. ..+.++
T Consensus        83 ~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~~~~~~~~~N~s~rfe~rw~-~~~v~~~-~s~~~~~~~g~~l~ip  160 (262)
T d1t3ta2          83 VRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFS-LVEVTQS-PSLLLQGMVGSQMPIA  160 (262)
T ss_dssp             HHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEE-EEEECCC-SCGGGTTCTTCEEEEE
T ss_pred             HHHHHHHHhhcCCceEEeechHHHHHHHhcccCCCcccCcccccccCCeEEEEEe-eeccccc-cChhhccCCCcceEee
Confidence            1233333 2 5689999999999999985  2 11     12222211 122232 3444432 466777775 446777


Q ss_pred             eeeec
Q 031223          155 CYNIQ  159 (163)
Q Consensus       155 ~~H~~  159 (163)
                      .-|.+
T Consensus       161 iaHgE  165 (262)
T d1t3ta2         161 VSHGE  165 (262)
T ss_dssp             EEESS
T ss_pred             eecCC
Confidence            66764

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1e-11  Score=95.43  Aligned_cols=92  Identities=23%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             CeEEEE----ECCCChHHHHHHHHH----HcCCEEEEEeCC--CC---CHHHHhccCCCEEEeCCCCCCCCCChhHHHHH
Q 031223           25 NPIIVI----DNYDSFTYNLCQYMG----ELGYHFEVYRND--EL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTV   91 (163)
Q Consensus        25 ~~Ilvi----d~~~~~~~~~~~~l~----~~G~~~~v~~~~--~~---~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i   91 (163)
                      .+|++|    +..|+|. ++.++|+    ..+..+.+...+  ..   +..+. ..++|||+++||.+....++++ ..+
T Consensus         4 v~IaiVGKY~~l~DaY~-Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~-L~~~dGIlvPGGFG~rG~eGki-~ai   80 (250)
T d1vcoa1           4 VKIAIAGKYVKMPDAYL-SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEA-FRDVSGILVPGGFGVRGIEGKV-RAA   80 (250)
T ss_dssp             EEEEEEESCC---CTTH-HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHH-TTTCSCEEECCCCSSTTHHHHH-HHH
T ss_pred             EEEEEEeCCCCCchHHH-HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHH-HhcCCeEEecCCCCccchHHHH-HHH
Confidence            578888    3334452 3444454    456666654332  11   12222 1379999999998866555554 334


Q ss_pred             HH-hCCCCCEEEEehHHHHHHHHhCCeee
Q 031223           92 LE-LGPTVPLFGVCMGLQCIGEAFGGKIV  119 (163)
Q Consensus        92 ~~-~~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (163)
                      +. .++++|+||||+|||++...+.-+|.
T Consensus        81 ~yARen~iPfLGIClGmQ~avIEfARnvl  109 (250)
T d1vcoa1          81 QYARERKIPYLGICLGLQIAVIEFARNVA  109 (250)
T ss_dssp             HHHHHTTCCEEEETHHHHHHHHHHHHHTS
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHHHHHHH
Confidence            54 36899999999999999998764443

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.1e-09  Score=82.55  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CeEEEEE----CCCChH----HHHHHHHHHcCCEEEEEeCCCC--------------------------------CHHHH
Q 031223           25 NPIIVID----NYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------------------------TVEEL   64 (163)
Q Consensus        25 ~~Ilvid----~~~~~~----~~~~~~l~~~G~~~~v~~~~~~--------------------------------~~~~~   64 (163)
                      +||+||=    ++|++.    -.....|++.|++++++.++..                                +++++
T Consensus         2 kKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v   81 (217)
T d1vhqa_           2 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   81 (217)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence            3688872    234432    2367889999999999876420                                13444


Q ss_pred             hccCCCEEEeCCCCCCCCC-------------ChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhC
Q 031223           65 KRKNPRGVLISPGPGAPQD-------------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        65 ~~~~~dgvvl~GG~~~~~d-------------~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~G  115 (163)
                      ...+||+|||+||.+...+             .+.+.++++++ ++++|+.+||.|.++|+.+.+
T Consensus        82 ~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_          82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             CHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence            4468999999999774322             13467888885 789999999999999999865

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=7.1e-09  Score=74.34  Aligned_cols=88  Identities=13%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             CeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCC--------------CCHHHHhccCCCEEEeCCCCCCC--CCC
Q 031223           25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDS   84 (163)
Q Consensus        25 ~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~--------------~~~~~~~~~~~dgvvl~GG~~~~--~d~   84 (163)
                      |||+|+=. ++|    .....+.|++.|+++.++.++.              .+++++...+||+||++||++..  ...
T Consensus         1 mKv~il~~-dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~   79 (166)
T d1g2ia_           1 MKVLFLTA-NEFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLN   79 (166)
T ss_dssp             CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred             CEEEEEeC-CCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccC
Confidence            57888732 233    2236678999999999887642              12333333479999999996432  133


Q ss_pred             hhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        85 ~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +.+.++++++ ++++|+.+||.|..+|+++
T Consensus        80 ~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          80 EKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             hHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            4678888885 7899999999999999997

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.4e-08  Score=72.00  Aligned_cols=89  Identities=13%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             CeEEEEE--CCCCh-HHHHHHHHHHcCCEEEEEeCCC----------------CCHHHHhccCCCEEEeCCCCCCC--CC
Q 031223           25 NPIIVID--NYDSF-TYNLCQYMGELGYHFEVYRNDE----------------LTVEELKRKNPRGVLISPGPGAP--QD   83 (163)
Q Consensus        25 ~~Ilvid--~~~~~-~~~~~~~l~~~G~~~~v~~~~~----------------~~~~~~~~~~~dgvvl~GG~~~~--~d   83 (163)
                      +||+|+=  .+... ...+.+.|++.|++++++.+..                .+++++...+||+||++||.+..  ..
T Consensus         2 KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~~   81 (170)
T d1oi4a1           2 KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRG   81 (170)
T ss_dssp             CEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTT
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhcc
Confidence            4688883  22222 2246788999999998776431                11233334579999999995421  23


Q ss_pred             ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           84 SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        84 ~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ...+.++++++ ++++||.+||.|..+|+.+
T Consensus        82 ~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          82 DNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             ChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            35678888884 7899999999999999986

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=98.55  E-value=1.4e-08  Score=72.20  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=62.5

Q ss_pred             CCeEEEEECCCC---hHHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC-CCCh
Q 031223           24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSG   85 (163)
Q Consensus        24 ~~~Ilvid~~~~---~~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-~d~~   85 (163)
                      +.||+|+=..+.   ....+.+.|++.|+++.++.+...              ++++.+..+||+|||+||.... ...+
T Consensus         3 grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~~~   82 (156)
T d1p80a1           3 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNG   82 (156)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHTCH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhcch
Confidence            467888843221   123477889999999998865421              1222223479999999985421 1234


Q ss_pred             hHHHHHHH-hCCCCCEEEEehHHHHHHHH
Q 031223           86 ISLQTVLE-LGPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        86 ~~~~~i~~-~~~~~PvLGIC~G~QlLa~a  113 (163)
                      ...++|++ +.++|||.+||.|.|+|+.+
T Consensus        83 ~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          83 DANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             HHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             HHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            56889998 57899999999999999875

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=4e-08  Score=71.11  Aligned_cols=89  Identities=13%  Similarity=0.127  Sum_probs=63.4

Q ss_pred             CCeEEEEECCCCh----HHHHHHHHHHcCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCCC---
Q 031223           24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---   82 (163)
Q Consensus        24 ~~~Ilvid~~~~~----~~~~~~~l~~~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~~---   82 (163)
                      +.||+|+=. ++|    ...+.+.|++.|++++++.++..              +..+....+||++++.||...+.   
T Consensus         3 ~rkI~ilv~-dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~   81 (184)
T d1sy7a1           3 SRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS   81 (184)
T ss_dssp             TCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred             ccEEEEEec-CCCcHHHHHHHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccc
Confidence            457888843 233    22367889999999998875421              11222234789999999865432   


Q ss_pred             CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ......++++++ ++++|+.+||.|.++|+.+
T Consensus        82 ~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          82 KNGRALHWIREAFGHLKAIGATGEAVDLVAKA  113 (184)
T ss_dssp             TCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             cccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence            345678899885 7899999999999999997

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-07  Score=68.87  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             CeEEEEECCCCh---H-HHHHHHHHHcCCEEEEEeCCC---------------CCHHHHhc-cCCCEEEeCCCCCCCC--
Q 031223           25 NPIIVIDNYDSF---T-YNLCQYMGELGYHFEVYRNDE---------------LTVEELKR-KNPRGVLISPGPGAPQ--   82 (163)
Q Consensus        25 ~~Ilvid~~~~~---~-~~~~~~l~~~G~~~~v~~~~~---------------~~~~~~~~-~~~dgvvl~GG~~~~~--   82 (163)
                      +||+|+=.. +|   . -...+.|++.|++++++..+.               .+++++.. .+||+|+|+||...+.  
T Consensus         2 Kkvlvll~~-Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l   80 (186)
T d1p5fa_           2 KRALVILAK-GAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL   80 (186)
T ss_dssp             CEEEEEECT-TCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHH
T ss_pred             cEEEEEeCC-CCCHHHHHHHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccc
Confidence            578888542 33   2 236788999999999887531               11233332 4799999999964332  


Q ss_pred             -CChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           83 -DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        83 -d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                       +.+.+.++++++ ++++|+.+||.|.++|+.+
T Consensus        81 ~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          81 SESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence             234578888885 7899999999999999986

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.41  E-value=4.5e-07  Score=67.93  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCEEEEEeCCCC---------------------------CHHHHhccCCCEEEeCCCCCCCC---CChhHH
Q 031223           39 NLCQYMGELGYHFEVYRNDEL---------------------------TVEELKRKNPRGVLISPGPGAPQ---DSGISL   88 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~~---------------------------~~~~~~~~~~dgvvl~GG~~~~~---d~~~~~   88 (163)
                      ..++.|++.|+++++..+...                           .++++...+||+|+|+||.+...   +...+.
T Consensus        30 ~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~  109 (221)
T d1u9ca_          30 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ  109 (221)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred             HHHHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHH
Confidence            366789999999999875210                           02233345899999999976433   334567


Q ss_pred             HHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           89 QTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        89 ~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      ++++++ ++++|+.+||.|.++|+.+
T Consensus       110 ~li~~~~~~~k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         110 YVLQQFAEDGRIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             HHHHHHHhccCcceeecccceeeecc
Confidence            788874 7899999999999999864

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.41  E-value=1.6e-07  Score=68.77  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             eEEEE--ECCCCh-HHHHHHHHHH-cCCEEEEEeCCCC--------------CHHHHhccCCCEEEeCCCCCCC-CCChh
Q 031223           26 PIIVI--DNYDSF-TYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSGI   86 (163)
Q Consensus        26 ~Ilvi--d~~~~~-~~~~~~~l~~-~G~~~~v~~~~~~--------------~~~~~~~~~~dgvvl~GG~~~~-~d~~~   86 (163)
                      ||+|+  |.+..+ ...+...|++ .|+++.++.++..              .++++...+||.|||+||.... ...+.
T Consensus         3 kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~~~~~~   82 (188)
T d2fexa1           3 RIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAAD   82 (188)
T ss_dssp             EEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCC
T ss_pred             EEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccccccHH
Confidence            46666  433223 3345677775 7999998876521              1233333479999999986421 22234


Q ss_pred             HHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           87 SLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        87 ~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                      +.++++++ ++++|+.+||-|..+|+.+
T Consensus        83 l~~~lr~~~~~~~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          83 LGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             CHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence            67888885 7889999999999999885

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=1.6e-06  Score=65.56  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=53.8

Q ss_pred             HHHHHHHcCCEEEEEeCCC------------------------------------CCHHHHhccCCCEEEeCCCCCCCCC
Q 031223           40 LCQYMGELGYHFEVYRNDE------------------------------------LTVEELKRKNPRGVLISPGPGAPQD   83 (163)
Q Consensus        40 ~~~~l~~~G~~~~v~~~~~------------------------------------~~~~~~~~~~~dgvvl~GG~~~~~d   83 (163)
                      ..+.|++.|+++++..+.-                                    ..++++...+||+|+|+||.+...+
T Consensus        33 P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ydav~ipGG~g~~~d  112 (236)
T d1qvwa_          33 PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFD  112 (236)
T ss_dssp             HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHHHHHHTCBCGGGCCGGGCSEEEECCSTTHHHH
T ss_pred             HHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHHHHHhcccChhhCCHhHCCEEEEeCCccchhc
Confidence            5678999999999985410                                    1122233357999999999764332


Q ss_pred             ---ChhHHHHHHHh-CCCCCEEEEehHHHHHHHH
Q 031223           84 ---SGISLQTVLEL-GPTVPLFGVCMGLQCIGEA  113 (163)
Q Consensus        84 ---~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a  113 (163)
                         ...+.++++++ ++++||.+||+|-++|+.+
T Consensus       113 l~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_         113 YPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             chhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence               33567788884 7899999999999988754

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.5e-06  Score=63.71  Aligned_cols=75  Identities=11%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             HHHHHHHHcCCEEEEEeCCC-----------------CCHHHHhccCCCEEEeCCCCCCCC---CChhHHHHHHHh-CCC
Q 031223           39 NLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPT   97 (163)
Q Consensus        39 ~~~~~l~~~G~~~~v~~~~~-----------------~~~~~~~~~~~dgvvl~GG~~~~~---d~~~~~~~i~~~-~~~   97 (163)
                      ...+.|++.|++++++....                 .+.+++...+||+||++||...+.   +...+.++++++ +++
T Consensus        19 ~p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~g   98 (195)
T d2ab0a1          19 TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSG   98 (195)
T ss_dssp             HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHHhhcc
Confidence            36788999999998875321                 123444446899999999964322   335678889885 789


Q ss_pred             CCEEEEehH-HHHHHHH
Q 031223           98 VPLFGVCMG-LQCIGEA  113 (163)
Q Consensus        98 ~PvLGIC~G-~QlLa~a  113 (163)
                      +|+.+||.| ..+|+.+
T Consensus        99 k~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          99 RIVAAICAAPATVLVPH  115 (195)
T ss_dssp             CEEEEETHHHHHHTTTT
T ss_pred             ceeeeeeccchhhhhhc
Confidence            999999999 5788776

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2.4e-05  Score=60.35  Aligned_cols=47  Identities=11%  Similarity=0.040  Sum_probs=38.0

Q ss_pred             CCCEEEeCCCCCCCCCC---hhHHHHHHHh-CCCCCEEEEehHHHHHHHHh
Q 031223           68 NPRGVLISPGPGAPQDS---GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF  114 (163)
Q Consensus        68 ~~dgvvl~GG~~~~~d~---~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~  114 (163)
                      +||+|+++||.+...+.   ..+.++++++ ++++||..||+|-..|..+.
T Consensus       141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~  191 (279)
T d1n57a_         141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR  191 (279)
T ss_dssp             SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred             cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcc
Confidence            79999999997765553   3467778774 78999999999999987653

>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.0013  Score=49.39  Aligned_cols=72  Identities=22%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEEEe
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC  104 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLGIC  104 (163)
                      ||++||-..++....+.++|++.+.+++++..   ..++++  ++|.+|..||-+      .+...++.+...+|++||=
T Consensus         1 mr~~iv~k~d~~~k~i~e~l~~~~~~~~~~~~---~~~~~~--~~D~vi~iGGDG------T~L~a~~~~~~~~PilGIn   69 (249)
T d1z0sa1           1 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQ---PSEELE--NFDFIVSVGGDG------TILRILQKLKRCPPIFGIN   69 (249)
T ss_dssp             CEEEEEESSSTTHHHHHHHHHHTTCEEEEESS---CCGGGG--GSSEEEEEECHH------HHHHHHTTCSSCCCEEEEE
T ss_pred             CeEEEEECCchhHHHHHHHHHhcCCeEEEecC---cccccc--CCCEEEEECCcH------HHHHHHHHhcCCCcEEEEC
Confidence            68999977777888899999999999988742   123443  789999999943      3555666666678999999


Q ss_pred             hHH
Q 031223          105 MGL  107 (163)
Q Consensus       105 ~G~  107 (163)
                      .|.
T Consensus        70 ~G~   72 (249)
T d1z0sa1          70 TGR   72 (249)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            885

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0094  Score=39.88  Aligned_cols=84  Identities=26%  Similarity=0.347  Sum_probs=53.9

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC-CChhHHHHHHHhCCCC
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTV   98 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~~~~~   98 (163)
                      +...+++|||||........+.+.|+..|+.+.....-....+-+....||.|++--.  .|. +--++.+.+++.....
T Consensus         4 ~~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~ea~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~~   81 (133)
T d2ayxa1           4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVN--MPNMDGYRLTQRIRQLGLTL   81 (133)
T ss_dssp             CCCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEES--SCSSCCHHHHHHHHHHHCCS
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEECcHHHHHHHHhccCceEEEEecc--CCCCCHHHHHHHHHHhCCCC
Confidence            3445689999997655667788899999999876643211122333458998887322  122 2224567777755668


Q ss_pred             CEEEEeh
Q 031223           99 PLFGVCM  105 (163)
Q Consensus        99 PvLGIC~  105 (163)
                      |++.+.-
T Consensus        82 pii~lt~   88 (133)
T d2ayxa1          82 PVIGVTA   88 (133)
T ss_dssp             CEEEEES
T ss_pred             CEEEEec
Confidence            9887754

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.06  E-value=0.015  Score=38.32  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=51.4

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      .+.+|+|||........+.+.|+..|+++..........+.+....||.||+-=  ..|... -++.+.+++.....|++
T Consensus         2 ~k~~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~--~mp~~~G~el~~~l~~~~~~~piI   79 (123)
T d1krwa_           2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDI--RMPGMDGLALLKQIKQRHPMLPVI   79 (123)
T ss_dssp             CCCEEEEESSSHHHHHHHHHHHHHTTCEEEEESSSHHHHHHHTTCCCSEEEECC--SSSSSTTHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEehh--hcCCchHHHHHHHHHHhCCCCeEE
Confidence            345799999766677788899999999988765321123334445899888721  122222 23566666656678987


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        80 ~~t   82 (123)
T d1krwa_          80 IMT   82 (123)
T ss_dssp             ESC
T ss_pred             EEe
Confidence            543

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0081  Score=39.59  Aligned_cols=78  Identities=10%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLGI  103 (163)
                      +||+|||........+.+.|+..|+++.....-....+.+....||.+++-=.  -|... -++.+.+++.....|++-+
T Consensus         2 PkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~~--mP~~~G~el~~~ir~~~~~~piI~l   79 (121)
T d1ys7a2           2 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVCVL   79 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEee--ccCcccHHHHHHHHhcCCCCEEEEE
Confidence            58999997655677788999999999877643211123344468998887221  12222 2455666766667998876


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      .
T Consensus        80 t   80 (121)
T d1ys7a2          80 S   80 (121)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.91  E-value=0.0089  Score=39.23  Aligned_cols=80  Identities=15%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (163)
                      |+.||||||........+.+.|+..|+++..........+.+....||.||+-=.  -|...+ .+...+++.....|++
T Consensus         1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~G~~~~~~~r~~~~~~~ii   78 (121)
T d1mvoa_           1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPIL   78 (121)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcccccEEEeccc--ccCCCCchhhhhhhccCCCCEEE
Confidence            3468999997655677788999999999887643211123333458998887211  122222 3445566555667876


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        79 ~lt   81 (121)
T d1mvoa_          79 MLT   81 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.012  Score=38.61  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvLG  102 (163)
                      .+||+|||....+...+.+.|+..|+++..........+.+....||.||+-=.  .|... -.+.+.+++-....|++-
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlillD~~--mp~~~g~~~~~~lr~~~~~~piI~   78 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM   78 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcchHHHHHHHHhhCccccccccc--cccchhHHHHHHHHhcCCCCcEEE
Confidence            368999997655677788999999999887643211123334468998887322  12222 234566666556789886


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +.
T Consensus        79 lt   80 (122)
T d1kgsa2          79 LT   80 (122)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.016  Score=37.88  Aligned_cols=78  Identities=12%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      +||+|||........+.+.|+..|+++.....-....+.+....||.+|+-=.  -|...+ ++.+.+++-....|++-+
T Consensus         1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~i~~~~~~~pvi~l   78 (119)
T d2pl1a1           1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL   78 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcccceeehhcc--CCCchhHHHHHHHHhcCcccceEee
Confidence            58999998666777788999999998876643211122333458998887222  122222 345555655567898866


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      .
T Consensus        79 t   79 (119)
T d2pl1a1          79 T   79 (119)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=95.57  E-value=0.02  Score=37.64  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (163)
                      .+.+|+|||....+...+.+.|+..|+.+......+...+.+....||.+|+ -= .-|.-.+ ++.+.+++.....|++
T Consensus         2 ~~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvi~-D~-~mp~~~G~e~~~~lr~~~~~~~iI   79 (123)
T d1dbwa_           2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVT-DL-RMPDMSGVELLRNLGDLKINIPSI   79 (123)
T ss_dssp             CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEE-EC-CSTTSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhcCCcEEEE-ec-cCccccchHHHHHHHhcCCCCeEE
Confidence            4568999997666777899999999998876532111122233357887775 21 1122222 3566677766678988


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        80 ~lt   82 (123)
T d1dbwa_          80 VIT   82 (123)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.013  Score=38.57  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG  102 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLG  102 (163)
                      ++||||||........+.+.|++.|+++..........+.+...+||.||+-=  ..+...+ .+.+.+++- .+.|++.
T Consensus         2 tp~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlii~D~--~mp~~~G~~~~~~~r~~-~~~pii~   78 (121)
T d1xhfa1           2 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI--NLPGKNGLLLARELREQ-ANVALMF   78 (121)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECS--SCSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHhcCCCEEEeec--ccCCccCcHHHHHHHhc-CCCcEEE
Confidence            46999998765567779999999999887664321122334446899888731  2222222 334444443 4699887


Q ss_pred             Ee
Q 031223          103 VC  104 (163)
Q Consensus       103 IC  104 (163)
                      +-
T Consensus        79 lt   80 (121)
T d1xhfa1          79 LT   80 (121)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.34  E-value=0.022  Score=37.02  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=48.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      +||||||........+.+.|++.|+++.....-....+.+....||.||+-=  ..|...+ .+.+.+++ ....|++-+
T Consensus         1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlillD~--~mp~~~G~~~~~~i~~-~~~~pvI~l   77 (117)
T d2a9pa1           1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDL--MLPEIDGLEVAKTIRK-TSSVPILML   77 (117)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHT-TCCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEecc--ccCCCCccHHHHHHHh-CCCCCEEEE
Confidence            4799999765566778889999999987664321112333345899888721  1222222 33444444 356899887


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      .-
T Consensus        78 t~   79 (117)
T d2a9pa1          78 SA   79 (117)
T ss_dssp             ES
T ss_pred             ec
Confidence            64

>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: ThuA-like
domain: GK2113 homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.34  E-value=0.21  Score=36.41  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCEEEEEeCCC----CCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHH-hCCCCCEEEEehHHHH--H
Q 031223           38 YNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQC--I  110 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~----~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~-~~~~~PvLGIC~G~Ql--L  110 (163)
                      ..+...|++.|+++++...++    .+.+.+.  +||.||+.+-.......+...+.+.+ +.++++++|+=-++-.  -
T Consensus        30 ~~ia~~l~~~g~~v~tat~~e~~~~~~~~~L~--~~Dvli~~~~~~~~~l~~~q~~al~~~v~~G~G~VglH~a~~~~~~  107 (240)
T d1t0ba_          30 TVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIF  107 (240)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGGSHHH
T ss_pred             HHHHHHhhcCCceEEEEEecCccccCCHHHHh--cCCEEEEeCCCCCCcCCHHHHHHHHHHHHcCCCEEEEecCcCCCch
Confidence            457778889999998754332    1233343  89999985532211112233344444 5788999998555321  1


Q ss_pred             HHHhCCeeeeCCCcccccceeEEEeCCCCcCccccCCCCceEE
Q 031223          111 GEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSKYVSI  153 (163)
Q Consensus       111 a~a~Gg~v~~~~~~~e~G~~~~i~~~~~~~~~lf~~lp~~~~v  153 (163)
                      ...+|+...-..  ...+....+.+.+ .++|+.+++|+.+..
T Consensus       108 ~~~~Gg~~~~~~--h~~~~~~~v~v~d-~~HPi~~gl~~~~~~  147 (240)
T d1t0ba_         108 KKLMGTTCNLKW--READEKERLWVVA-PGHPIVEGIGPYIEL  147 (240)
T ss_dssp             HHHHCSCCCCEE--EEEEEEEEEEESC-TTSGGGTTCCSEEEE
T ss_pred             HHHhCCcccccc--CCCCcEEEEEecC-CCChhHcCCCCceec
Confidence            223565321111  1112222344444 378999999976654

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=95.24  E-value=0.018  Score=37.61  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      .||+|||........+.+.|+..|+++..........+.+....||.+++--  .-|...+ ++.+.+++...+.|++-+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~~~~~~~dlillD~--~mP~~~G~el~~~lr~~~~~~pvi~l   79 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDM--KIPGMDGIEILKRMKVIDENIRVIIM   79 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCEEEEec--cCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            5899998766667778889999999887654211112233345799888721  1222222 456667776677998877


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      -
T Consensus        80 t   80 (119)
T d1peya_          80 T   80 (119)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.029  Score=36.57  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=50.0

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (163)
                      +||+|||........+...|+..|+++.....-...++.+....||.+|+-=.  -|...+ ++.+.+++.  .+..|++
T Consensus         1 KkILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlil~D~~--mp~~~G~~l~~~lr~~~~~~~~pvi   78 (121)
T d1zesa1           1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWM--LPGGSGIQFIKHLKRESMTRDIPVV   78 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHSSSSCCSEEEECSS--CTTSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECChHHHHHHHHccCCCEEEeecC--CCCCCHHHHHHHHHhCccCCCCeEE
Confidence            47999997655677788999999998876643111122233457998887222  133222 456666663  4679999


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        79 ~lt   81 (121)
T d1zesa1          79 MLT   81 (121)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.13  E-value=0.014  Score=39.10  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      +||+|||....+...+.+.|+..|+++.....-....+-+....||.|++- - ..|...+ .+.+.+++...+.|++-+
T Consensus         1 mkILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eAl~~l~~~~~dlvilD-~-~mp~~~G~e~~~~lr~~~~~~piI~l   78 (137)
T d1ny5a1           1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLD-L-LLPDVNGLEILKWIKERSPETEVIVI   78 (137)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEE-S-BCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEEEecCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHhhccccccchHH-H-hhhhhhHHHHHHHHHHhCCCCCEEEE
Confidence            589999876567777889999999998765421111222334579988872 1 1222222 356666766677998865


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      -
T Consensus        79 T   79 (137)
T d1ny5a1          79 T   79 (137)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=95.01  E-value=0.02  Score=37.52  Aligned_cols=78  Identities=14%  Similarity=0.201  Sum_probs=49.7

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~PvL  101 (163)
                      .||+|||....+...+.+.|+..|+++.....-....+-+....||.|++--.  .|...+ ++.+.+++.  .+.+|++
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~--mp~~dG~el~~~ir~~~~~~~iPii   79 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHIPVV   79 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEEec--cCCCcHHHHHHHHHhCCCcCCCCeE
Confidence            58999997655677788899999998876542111122233357998877221  222222 456677763  3678998


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      .+.
T Consensus        80 ~lt   82 (123)
T d1mb3a_          80 AVT   82 (123)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            876

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=94.85  E-value=0.021  Score=37.34  Aligned_cols=79  Identities=11%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc-cCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~-~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (163)
                      .+||+|||........+.+.|+..|+++..........+.+.. ..||.||+--.  -|...+ ++.+.+|+...+.|++
T Consensus         2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dliilD~~--lp~~~G~el~~~ir~~~~~~pii   79 (118)
T d2b4aa1           2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQPSVL   79 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSCCEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCCeEEECCHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence            4789999986667778899999999998877532111222322 36898887222  122222 3455556545678987


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+=
T Consensus        80 ~lt   82 (118)
T d2b4aa1          80 ILT   82 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            763

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=94.36  E-value=0.035  Score=36.13  Aligned_cols=79  Identities=15%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (163)
                      ++||+|||........+.+.|++.|+++.....+. ..++.+...+||.+++-=  ..|...+ ++.+.+++...+.|++
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~--~mp~~~G~e~~~~ir~~~~~~pvi   78 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDI--TMPEMNGIDAIKEIMKIDPNAKII   78 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEEC--SCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEec--CCCCCCHHHHHHHHHHhCCCCcEE
Confidence            46899998765566678889999999875443221 112333345899888721  1222222 3556667666779987


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+-
T Consensus        79 ~ls   81 (118)
T d1u0sy_          79 VCS   81 (118)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=94.27  E-value=0.072  Score=35.48  Aligned_cols=78  Identities=13%  Similarity=0.099  Sum_probs=50.2

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHh--CCCCCEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF  101 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~--~~~~PvL  101 (163)
                      .||||||........+.+.|+..|+++.....-....+.+....||.|++ .= ..+... ..+.+.+++.  ..++||+
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~dlil~-D~-~~p~~~G~~~~~~ir~~~~~~~~piI   79 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILL-DV-MMPGMDGFTVCRKLKDDPTTRHIPVV   79 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE-ES-CCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEEccchhhhhhhhcccceeeee-ec-cccCCCchHHHHHhhhcccccCCCEE
Confidence            48999998777788899999999998876643211122233457998776 21 122222 2355666663  4679999


Q ss_pred             EEe
Q 031223          102 GVC  104 (163)
Q Consensus       102 GIC  104 (163)
                      -+.
T Consensus        80 ~lt   82 (139)
T d1w25a1          80 LIT   82 (139)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.054  Score=35.08  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=46.9

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      .||+|||....+...+.+.|++.|+++..........+.+....||.+++-=.  .+...+ +..+.++. ....|++-+
T Consensus         2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~dliilD~~--mp~~~g~~~~~~~~~-~~~~piI~l   78 (120)
T d1zgza1           2 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDENGLMLTRALRE-RSTVGIILV   78 (120)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHT-TCCCEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEeeehh--hccchhHHHHHHHhc-cCCCeEEEE
Confidence            58999998666777789999999998876643211122233458998887221  111111 22333333 456898877


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      .
T Consensus        79 t   79 (120)
T d1zgza1          79 T   79 (120)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.09  E-value=0.016  Score=42.47  Aligned_cols=86  Identities=9%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             CeEEEEECC---CC---hHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCC----CChhHHHHHHH-
Q 031223           25 NPIIVIDNY---DS---FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-   93 (163)
Q Consensus        25 ~~Ilvid~~---~~---~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~----d~~~~~~~i~~-   93 (163)
                      .||++|-..   +.   |.....+.+..+|+++..++..+...+.+.  +.|+|+++||.....    ....+.+.|++ 
T Consensus        32 ~~i~~IPtAs~~~~~~~y~~~~~~~~~~l~~~v~~l~~~~~~~~~l~--~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~  109 (229)
T d1fyea_          32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMADR  109 (229)
T ss_dssp             CEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEEGGGSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHHHH
T ss_pred             CeEEEECCCCCCCchhHHHHHHHHHhhhcCceeEEecccccHHHHHh--hCCEEEEcCCCHHHHHHHHHhCCHHHHHHHH
Confidence            589999321   12   345566677889998887754322234444  789999999842110    00113556666 


Q ss_pred             hCCCCCEEEEehHHHHHHH
Q 031223           94 LGPTVPLFGVCMGLQCIGE  112 (163)
Q Consensus        94 ~~~~~PvLGIC~G~QlLa~  112 (163)
                      +.++.++.|.--|+-++..
T Consensus       110 ~~~G~vi~G~SAGA~v~~~  128 (229)
T d1fyea_         110 VKRGALYIGWSAGANLACP  128 (229)
T ss_dssp             HHTTCEEEEETHHHHHTSS
T ss_pred             HHcCCeEEEeChhHhhcCc
Confidence            5789999999999766543

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=93.95  E-value=0.056  Score=36.14  Aligned_cols=78  Identities=17%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      ++|+|||........+.+.|+..|+.+.....-....+.+....||.||+ -= ..|...+ .+.+.+++...++|++-+
T Consensus         1 P~ILiVDDd~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlil~-D~-~mP~~~G~el~~~lr~~~~~~pvI~l   78 (140)
T d1qkka_           1 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVIS-DI-RMPGMDGLALFRKILALDPDLPMILV   78 (140)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEE-ES-CCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCChHHHHHHHhccCcchHHH-hh-ccCCCCHHHHHHHHHHhCCCCcEEEE
Confidence            47999987655677788899999998877642111112223347897776 21 1222222 456667776677999887


Q ss_pred             e
Q 031223          104 C  104 (163)
Q Consensus       104 C  104 (163)
                      -
T Consensus        79 T   79 (140)
T d1qkka_          79 T   79 (140)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=93.86  E-value=0.024  Score=37.48  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             cCCCCCeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--C
Q 031223           20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--G   95 (163)
Q Consensus        20 ~~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~   95 (163)
                      ++..++||+|||........+.+.|...|+. +.....-....+-+....||.||+ --. -|...+ ++.+.+|+.  .
T Consensus         2 s~~~~~kILiVDD~~~~~~~l~~~L~~~g~~~v~~a~~~~~al~~l~~~~~dlii~-D~~-mP~~~G~el~~~lr~~~~~   79 (129)
T d1p6qa_           2 SLAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVIS-DFN-MPKMDGLGLLQAVRANPAT   79 (129)
T ss_dssp             CCSSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEE-CSS-SCSSCHHHHHHHHTTCTTS
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhCCCCeEEe-eee-cCCCChHHHHHHHHhCccc
Confidence            5667789999997544566688899999985 333211001122233457997776 221 233222 355666652  4


Q ss_pred             CCCCEEEEe
Q 031223           96 PTVPLFGVC  104 (163)
Q Consensus        96 ~~~PvLGIC  104 (163)
                      ++.|++-+.
T Consensus        80 ~~~pii~lt   88 (129)
T d1p6qa_          80 KKAAFIILT   88 (129)
T ss_dssp             TTCEEEECC
T ss_pred             CCCeEEEEE
Confidence            678988765

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=93.84  E-value=0.053  Score=35.56  Aligned_cols=76  Identities=14%  Similarity=0.223  Sum_probs=46.5

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~~~~~~PvL  101 (163)
                      +++|+|||....+...+.+.|+..|+.+.........++.+....||.||+--.  .|... ..+.+.+++.....|+.
T Consensus         2 kP~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dliilD~~--mp~~~G~~~~~~i~~~~~~~~ii   78 (128)
T d1yioa2           2 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGMSGIELQEQLTAISDGIPIV   78 (128)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCccccccHHHHHHHHHhcCCCEeehhhh--cccchhHHHHHHHHhhCCCCeEE
Confidence            358999997656777789999999998876642111122223357898777322  12222 23455666655567765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.25  Score=30.30  Aligned_cols=72  Identities=11%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCC--CHHHH--------------hccCCCEEEeCCCCCCCCCChhH
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEEL--------------KRKNPRGVLISPGPGAPQDSGIS   87 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~--~~~~~--------------~~~~~dgvvl~GG~~~~~d~~~~   87 (163)
                      +.+|+|+-.+-+ -.+.+++|.+.|.++.+++....  ..+.+              .-.++|.+|+|+|-  +.+.   
T Consensus         5 ~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi--~~~~---   78 (93)
T d2jfga1           5 GKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI--ALAH---   78 (93)
T ss_dssp             TCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTS--CTTS---
T ss_pred             CCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCC--CCCC---
Confidence            357999987533 22578999999999998864211  01110              01267999999985  2222   


Q ss_pred             HHHHHHh-CCCCCEEE
Q 031223           88 LQTVLEL-GPTVPLFG  102 (163)
Q Consensus        88 ~~~i~~~-~~~~PvLG  102 (163)
                       +++.++ ++++||.|
T Consensus        79 -~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          79 -PSLSAAADAGIEIVG   93 (93)
T ss_dssp             -HHHHHHHHTTCEEEC
T ss_pred             -HHHHHHHHcCCCeEC
Confidence             233332 46799876

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=93.16  E-value=0.69  Score=30.50  Aligned_cols=80  Identities=8%  Similarity=0.011  Sum_probs=46.0

Q ss_pred             CCeEEEEEC-CCChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHh--ccCCCEEEeCCCCCCCC-CChhHHHHHHHh-
Q 031223           24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQ-DSGISLQTVLEL-   94 (163)
Q Consensus        24 ~~~Ilvid~-~~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~--~~~~dgvvl~GG~~~~~-d~~~~~~~i~~~-   94 (163)
                      ..||+||=. ..+++..+++    .|.+.|+++++++....+.++..  ..++|++|+ |+|--.. ..+....++..+ 
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~~~~l~~~d~vi~-Gspt~~~~~~~~~~~~l~~~~   80 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIV-GSPTHNNGILPYVAGTLQYIK   80 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEE-ECCCBTTBCCHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhhccchhhCCEEEE-eccccCCccCchhHHHHHHhh
Confidence            457888843 2346665554    45568999999987544444321  138999999 5543222 223344444332 


Q ss_pred             ---CCCCCEEEEe
Q 031223           95 ---GPTVPLFGVC  104 (163)
Q Consensus        95 ---~~~~PvLGIC  104 (163)
                         -.++|+...|
T Consensus        81 ~~~~~~k~~~~fg   93 (152)
T d1e5da1          81 GLRPQNKIGGAFG   93 (152)
T ss_dssp             HTCCCSCEEEEEE
T ss_pred             ccCCCCCEEEEEE
Confidence               3567775554

>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Nitric oxide reductase C-terminal domain
species: Moorella thermoacetica [TaxId: 1525]

Probab=93.10  E-value=0.36  Score=31.88  Aligned_cols=80  Identities=10%  Similarity=0.070  Sum_probs=45.6

Q ss_pred             CCeEEEEEC-CCChHHHHHH----HHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCCCCCCC-CChhHHHHH---H
Q 031223           24 KNPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ-DSGISLQTV---L   92 (163)
Q Consensus        24 ~~~Ilvid~-~~~~~~~~~~----~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG~~~~~-d~~~~~~~i---~   92 (163)
                      +.|++||=. ..+++..+++    .+++.|+++++++....+.+++..  .++|+||+ |.|--.. -.+.+..++   .
T Consensus         2 k~K~lIvY~S~~GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gspt~~g~~~~~~~~~l~~l~   80 (149)
T d1ycga1           2 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLV-GSPTINNDILPVVSPLLDDLV   80 (149)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEE-ECCCBTTBCCGGGHHHHHHHH
T ss_pred             CcEEEEEEECCCcHHHHHHHHHHHHHHhcCCeeEEEEccccchHHHhhhhhhCCeEEE-EeecccCCCCHHHHHHHHHHh
Confidence            457888843 3346665554    455689999998765455555432  36999998 6653111 122333333   3


Q ss_pred             Hh-CCCCCEEEEe
Q 031223           93 EL-GPTVPLFGVC  104 (163)
Q Consensus        93 ~~-~~~~PvLGIC  104 (163)
                      .. -.++|+..+|
T Consensus        81 ~~~~~~k~~~~fg   93 (149)
T d1ycga1          81 GLRPKNKVGLAFG   93 (149)
T ss_dssp             HHCCSSCEEEEEE
T ss_pred             ccccCCCEEEEEe
Confidence            32 3567766553

>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: NAD kinase-like
domain: Inorganic polyphosphate/ATP-NAD kinase PpnK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.56  E-value=0.11  Score=39.46  Aligned_cols=76  Identities=14%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             eEEEEECCCC-----hHHHHHHHHHHcCCEEEEEeCCCCC-------HHH---------------HhccCCCEEEeCCCC
Q 031223           26 PIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-------VEE---------------LKRKNPRGVLISPGP   78 (163)
Q Consensus        26 ~Ilvid~~~~-----~~~~~~~~l~~~G~~~~v~~~~~~~-------~~~---------------~~~~~~dgvvl~GG~   78 (163)
                      +|+|+-+.+.     ....+.++|.+.|+++.+.......       .++               -...++|.+|..||-
T Consensus         2 ~v~lv~~~~k~~a~~~a~~i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGD   81 (302)
T d1u0ta_           2 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGD   81 (302)
T ss_dssp             EEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcCC
Confidence            6778855332     2345888999999998775321100       000               011357889999994


Q ss_pred             CCCCCChhHHHHHHHh-CCCCCEEEEehHH
Q 031223           79 GAPQDSGISLQTVLEL-GPTVPLFGVCMGL  107 (163)
Q Consensus        79 ~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~  107 (163)
                      +      .+...++.+ ..++|||||=.|.
T Consensus        82 G------T~L~a~~~~~~~~~PilGin~G~  105 (302)
T d1u0ta_          82 G------TFLRAAELARNASIPVLGVNLGR  105 (302)
T ss_dssp             H------HHHHHHHHHHHHTCCEEEEECSS
T ss_pred             h------HHHHHHHHhhccCCeEEEeCCCc
Confidence            3      356666664 4579999999984

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.099  Score=38.91  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=48.7

Q ss_pred             eEEEEECCCC----hHHHHHHHHHHcCCEEEEEeCCCC-CHHHH----hccCCCEEEeCCCCCCCCCChhHHHHHHHh-C
Q 031223           26 PIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLEL-G   95 (163)
Q Consensus        26 ~Ilvid~~~~----~~~~~~~~l~~~G~~~~v~~~~~~-~~~~~----~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~   95 (163)
                      +++||=|.-+    ....+...|++.|+++++...... ...++    ...+||.||+.||-++..+   ....+.+. .
T Consensus         2 ~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~e---v~~gl~~~~~   78 (295)
T d2bona1           2 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINE---VSTALIQCEG   78 (295)
T ss_dssp             CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHH---HHHHHHHCCS
T ss_pred             cEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHHH---HHHHHHhccC
Confidence            5666644322    223466788889999988865422 22222    2347999999999543211   12222222 2


Q ss_pred             CCCCEEEEe--hHHHHHHHHhCC
Q 031223           96 PTVPLFGVC--MGLQCIGEAFGG  116 (163)
Q Consensus        96 ~~~PvLGIC--~G~QlLa~a~Gg  116 (163)
                      ..+|.+||-  -=+=.+|+.+|.
T Consensus        79 ~~~p~lgilP~GTgN~~Ar~lg~  101 (295)
T d2bona1          79 DDIPALGILPLGTANDFATSVGI  101 (295)
T ss_dssp             SCCCEEEEEECSSSCHHHHHTTC
T ss_pred             CCCceEEEEECCcccchHHHcCC
Confidence            346777772  112345666664

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.047  Score=35.45  Aligned_cols=78  Identities=12%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEEEE
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV  103 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvLGI  103 (163)
                      ++|+|||....+...+.+.|+..|+++.....-....+.+....||.||+-=-  .|...+ ++.+.+++. ...|++-+
T Consensus         1 TnILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dliilD~~--mP~~~G~e~~~~ir~~-~~~piI~l   77 (119)
T d1zh2a1           1 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQW-SAVPVIVL   77 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHTT-CCCCEEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEeccc--cCCCCCchHHHHHHhc-cCCcEEEE
Confidence            46999997666777788999999999876643211123333458998887111  122122 344555553 45799888


Q ss_pred             eh
Q 031223          104 CM  105 (163)
Q Consensus       104 C~  105 (163)
                      +-
T Consensus        78 t~   79 (119)
T d1zh2a1          78 SA   79 (119)
T ss_dssp             ES
T ss_pred             ec
Confidence            75

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.44  E-value=0.2  Score=35.08  Aligned_cols=34  Identities=6%  Similarity=0.022  Sum_probs=22.8

Q ss_pred             CCeEEEEECC-CChHHH----HHHHHHHcCCEEEEEeCC
Q 031223           24 KNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRND   57 (163)
Q Consensus        24 ~~~Ilvid~~-~~~~~~----~~~~l~~~G~~~~v~~~~   57 (163)
                      .|||+||-+- .+++..    +.+-+++.|+++++++..
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~   40 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR   40 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHhcCCEEEEEEcc
Confidence            4789999531 235555    445556789999998753

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.95  E-value=0.3  Score=33.46  Aligned_cols=75  Identities=9%  Similarity=0.027  Sum_probs=47.2

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHhCCCCCEEE
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG  102 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~~~~~PvLG  102 (163)
                      ..++|+|+|-...+...+.+.|+..|+++.......   +.+ ...+|.|++ .= ..+.........+++-....|++.
T Consensus        10 ~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~---~al-~~~~Dlvl~-D~-~mp~~~~~~~~~~~~~~p~~pvI~   83 (189)
T d1qo0d_          10 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFT-SI-FQNRHHDEIAALLAAGTPRTTLVA   83 (189)
T ss_dssp             GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEE-EC-CSSTHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHcCCcceecCCHH---Hhc-cCCCCEEEE-cC-CCCCcHHHHHHHHHHcCCCCCEEE
Confidence            446999998877788889999999999998775432   122 247898776 21 112222222233333356688876


Q ss_pred             E
Q 031223          103 V  103 (163)
Q Consensus       103 I  103 (163)
                      +
T Consensus        84 l   84 (189)
T d1qo0d_          84 L   84 (189)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.79  E-value=0.32  Score=33.50  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             CeEEEEEC-CCChHHHHHH----HHHHcCCEEEEEeCCC-------------------CCHHHHhccCCCEEEeCCCC
Q 031223           25 NPIIVIDN-YDSFTYNLCQ----YMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGP   78 (163)
Q Consensus        25 ~~Ilvid~-~~~~~~~~~~----~l~~~G~~~~v~~~~~-------------------~~~~~~~~~~~dgvvl~GG~   78 (163)
                      +||+||-+ ..+++..+++    -+++.|+++++++...                   ...+++.  ++|+||| |+|
T Consensus         2 ~Kvliiy~S~~GnT~~la~~i~~g~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~D~ii~-gsP   76 (196)
T d2a5la1           2 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLK--NCAGLAL-GSP   76 (196)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHH--TCSEEEE-EEE
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCEEEEEeccccchHHHHhccccccccccccchhhhh--hcCEEEE-ecc
Confidence            58999954 1235555544    4556899999887532                   1234444  8999999 665

>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Flavodoxin FldA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.33  E-value=0.75  Score=31.92  Aligned_cols=77  Identities=16%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             eEEEEEC-CCChHHHHHHHHHH-----cCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCC-ChhHHHHHHHh----
Q 031223           26 PIIVIDN-YDSFTYNLCQYMGE-----LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-SGISLQTVLEL----   94 (163)
Q Consensus        26 ~Ilvid~-~~~~~~~~~~~l~~-----~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d-~~~~~~~i~~~----   94 (163)
                      +|+||-+ ..+.+..+.+++.+     .|+++++.+..+.+.+++.  ++|+||| |.|--... ...+..++.++    
T Consensus         3 kilivy~S~~G~T~~~A~~ia~g~~~~~g~~v~~~~~~~~~~~dl~--~~d~iii-GsPty~g~~~~~~~~fld~~~~~~   79 (184)
T d2arka1           3 KVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVL--WADGLAV-GSPTNMGLVSWKMKRFFDDVLGDL   79 (184)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHH--HCSEEEE-EEECBTTBCCHHHHHHHHHTGGGT
T ss_pred             eEEEEEECCCcHHHHHHHHHHHhhhhccCceEEEeecccccccchh--hCcEEEE-ecCccccccCHHHHHHHHHHHHHH
Confidence            5888843 33467776665533     5889998887766777776  7999999 66542222 23344454432    


Q ss_pred             ---CCCCCEEEEeh
Q 031223           95 ---GPTVPLFGVCM  105 (163)
Q Consensus        95 ---~~~~PvLGIC~  105 (163)
                         -+++|....+.
T Consensus        80 ~~~l~gK~~a~f~s   93 (184)
T d2arka1          80 WGEIDGKIACAFSS   93 (184)
T ss_dssp             TTSCTTCEEEEEEE
T ss_pred             HHHhCCeEEEEEEc
Confidence               15788766653

>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.35  Score=32.65  Aligned_cols=60  Identities=15%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----c--cCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~--~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      +++...+..++++.|+++..+..-..+.+.+.    .  .++|.||.+||. ++.+.+...+.+.++
T Consensus        26 dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG~-s~g~~D~~~~~l~~~   91 (149)
T d2nqra3          26 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV-SVGEADYTKTILEEL   91 (149)
T ss_dssp             CCHHHHHHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSSS-CSSSCSHHHHHHHHH
T ss_pred             ecchHHHHhhhhhcceEEEEccccCChHHHHHHHHHhcccccCEEEEcCCc-cCCchHHHHHHHHHc
Confidence            46777888999999998775542111233331    1  369999999995 555555566666654

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.09  E-value=0.094  Score=34.69  Aligned_cols=78  Identities=12%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCC-hhHHHHHHH-h----CC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE-L----GP   96 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~-~~~~~~i~~-~----~~   96 (163)
                      .++||||||........+.+.|+..|++++....-...++.+ ..+||.|++ -= ..|.-. -++.+.+++ .    ..
T Consensus         6 ~g~rILvVDD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l-~~~~dlill-D~-~mP~~dG~el~~~ir~~~~~~~~~   82 (134)
T d1dcfa_           6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV-SHEHKVVFM-DV-CMPGVENYQIALRIHEKFTKQRHQ   82 (134)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC-CTTCSEEEE-EC-CSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHh-hcCCCeEEE-Ee-ccCCCchHHHHHHHHHhcccccCC
Confidence            457999998654455567788999999988764321112222 347998776 21 112222 244566664 2    13


Q ss_pred             CCCEEEE
Q 031223           97 TVPLFGV  103 (163)
Q Consensus        97 ~~PvLGI  103 (163)
                      ..|++++
T Consensus        83 ~~~ii~l   89 (134)
T d1dcfa_          83 RPLLVAL   89 (134)
T ss_dssp             CCEEEEE
T ss_pred             CCeEEEE
Confidence            3566654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.84  E-value=1.3  Score=27.08  Aligned_cols=33  Identities=6%  Similarity=-0.297  Sum_probs=24.6

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN   56 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~   56 (163)
                      +|||.+|--++.--..+++.|.+.|+.+.-.+.
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~   33 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNI   33 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeC
Confidence            467888877666666788888888887776653

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.65  E-value=0.53  Score=31.72  Aligned_cols=56  Identities=20%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CChHHHHHHHHHHcCCEEEEEe--CCCCCHHHH----hc--cCCCEEEeCCCCCCCCCChhHHHHHH
Q 031223           34 DSFTYNLCQYMGELGYHFEVYR--NDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVL   92 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~--~~~~~~~~~----~~--~~~dgvvl~GG~~~~~d~~~~~~~i~   92 (163)
                      +++...+..+|++.|+++..+.  .|  +.+.+    ..  .++|.||.+||.+ +.+.+...+.+.
T Consensus        26 dsN~~~l~~~l~~~G~~v~~~~~v~D--d~~~i~~~l~~~~~~~DliittGG~s-~g~~D~~~~~l~   89 (155)
T d2ftsa3          26 DSNRSTLLATIQEHGYPTINLGIVGD--NPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVLD   89 (155)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEEEECS--SHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHHH
T ss_pred             echHHHHHHHhcccccceEEEEEecC--chhHHHHHHHHhhcccCEEEEecccc-CCcchhhHHHHH
Confidence            4567779999999998876443  23  22332    11  3699999999954 455544444444

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.33  E-value=1.5  Score=27.06  Aligned_cols=76  Identities=12%  Similarity=0.090  Sum_probs=47.4

Q ss_pred             CCCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCC-HHHHh--------------ccCCCEEEeCCCCCCCCCCh
Q 031223           21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELK--------------RKNPRGVLISPGPGAPQDSG   85 (163)
Q Consensus        21 ~~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~-~~~~~--------------~~~~dgvvl~GG~~~~~d~~   85 (163)
                      +...++|.+|--+++--..+++.|.+.|+.+.-.+....+ .+.+.              -.+.|.||+|.+-  +.+..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI--~~~np   82 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAI--KDDNP   82 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTS--CTTCH
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCc--CCCCH
Confidence            4455789999888888888999999999988877643111 01110              0257888887653  23333


Q ss_pred             hHHHHHHHhCCCCCEE
Q 031223           86 ISLQTVLELGPTVPLF  101 (163)
Q Consensus        86 ~~~~~i~~~~~~~PvL  101 (163)
                      ++.+   ..++++|++
T Consensus        83 el~~---A~~~gipii   95 (96)
T d1p3da1          83 ELVT---SKQKRIPVI   95 (96)
T ss_dssp             HHHH---HHHTTCCEE
T ss_pred             HHHH---HHHcCCCEE
Confidence            3222   234678986

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.41  Score=31.63  Aligned_cols=53  Identities=13%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             CCCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhc--cCCCEEEeCCC
Q 031223           22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPG   77 (163)
Q Consensus        22 ~~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dgvvl~GG   77 (163)
                      +.+|||+|.|.-   ...-.+.|++.|...........+.+++..  .++|++++.+.
T Consensus         2 k~kmKILv~d~i---~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~   56 (132)
T d1sc6a2           2 KDKIKFLLVEGV---HQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR   56 (132)
T ss_dssp             CSSCCEEECSCC---CHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSS
T ss_pred             CCCCEEEEECCC---CHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecc
Confidence            345899999863   345567899998764433333234555432  48999988554

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.23  E-value=0.83  Score=29.53  Aligned_cols=77  Identities=17%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             CeEEEEECCCChHHHHHHHHHHcCCE-EEEEeCCCCCHHHHh-----ccCCCEEEeCCCCCCCCCCh-hHHHHHHH-hCC
Q 031223           25 NPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELK-----RKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGP   96 (163)
Q Consensus        25 ~~Ilvid~~~~~~~~~~~~l~~~G~~-~~v~~~~~~~~~~~~-----~~~~dgvvl~GG~~~~~d~~-~~~~~i~~-~~~   96 (163)
                      .||||+|........+.+.|+..|+. +.....-...++.+.     ...||.|++=-.  .|.-.+ ++.+.+|+ ...
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~--mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ--MPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSC--CSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeC--CCCCCHHHHHHHHHHccCC
Confidence            58999987555666788899999986 555432111112221     247998887221  122222 45666765 456


Q ss_pred             CCCEEEE
Q 031223           97 TVPLFGV  103 (163)
Q Consensus        97 ~~PvLGI  103 (163)
                      ..|++-+
T Consensus        80 ~~piI~l   86 (128)
T d2r25b1          80 TSPIVAL   86 (128)
T ss_dssp             CSCEEEE
T ss_pred             CCeEEEE
Confidence            7898754

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.94  E-value=2.6  Score=27.35  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=42.7

Q ss_pred             CCeEEEEEC-CCChHHHHH----HHHHHcCCEEEEEeCCCC---CHHHHh--ccCCCEEEeCCCCCCCC-CChhHHHHHH
Q 031223           24 KNPIIVIDN-YDSFTYNLC----QYMGELGYHFEVYRNDEL---TVEELK--RKNPRGVLISPGPGAPQ-DSGISLQTVL   92 (163)
Q Consensus        24 ~~~Ilvid~-~~~~~~~~~----~~l~~~G~~~~v~~~~~~---~~~~~~--~~~~dgvvl~GG~~~~~-d~~~~~~~i~   92 (163)
                      ..||+||-. ..+++..++    +.|.+.|+++.++.....   +..++.  -.++|++|+ |.|--.. ..+....++.
T Consensus         3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~d~iii-gspt~~~~~~~~~~~~l~   81 (148)
T d1vmea1           3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF-GVSTYEAEIHPLMRFTLL   81 (148)
T ss_dssp             TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE-EECEETTEECHHHHHHHH
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccccccchhHhhhhHHHCCEeEE-EecccCCccCchHHHHHH
Confidence            467888832 334566544    555668999988764322   222221  248999998 5542111 1123333333


Q ss_pred             ---Hh-CCCCCEEEEe
Q 031223           93 ---EL-GPTVPLFGVC  104 (163)
Q Consensus        93 ---~~-~~~~PvLGIC  104 (163)
                         .. -+++|+.-.+
T Consensus        82 ~~~~~~~~~k~~~~fg   97 (148)
T d1vmea1          82 EIIDKANYEKPVLVFG   97 (148)
T ss_dssp             HHHHHCCCCCEEEEEE
T ss_pred             HHhhcccCCCEEEEEE
Confidence               32 3667766554

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=86.73  E-value=1.8  Score=26.76  Aligned_cols=77  Identities=21%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             CCCeEEEEECCCChHH--------HHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           23 NKNPIIVIDNYDSFTY--------NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~--------~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      |+.||+||--+.|-.+        .+.+.|++.|+++..+.++......+...++|.++.. =-+.+.+.+.+-.++..+
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~~~~~~~~d~vF~~-lHG~~GEdG~iQ~~le~l   79 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA-LHGRGGEDGTLQGMLELM   79 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC-CCSTTTSSSHHHHHHHHH
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccchhhhccCceeEEEe-ccCcchhccHHHHHHHHc
Confidence            4568999955444322        3778899999999888766444555544567766541 111233444544444444


Q ss_pred             CCCCCEEE
Q 031223           95 GPTVPLFG  102 (163)
Q Consensus        95 ~~~~PvLG  102 (163)
                      .  +|.-|
T Consensus        80 ~--IPytG   85 (96)
T d1iowa1          80 G--LPYTG   85 (96)
T ss_dssp             T--CCBSS
T ss_pred             C--CCccC
Confidence            4  66543

>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]

Probab=86.49  E-value=0.53  Score=31.57  Aligned_cols=60  Identities=25%  Similarity=0.205  Sum_probs=34.4

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      +++...+..+|++.|+++.....-..+.+.+.      ..++|.||.+||. ++.+.+...+.+.++
T Consensus        26 dsn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DliIttGG~-s~g~~D~~~~~l~~~   91 (148)
T d1uz5a3          26 DINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGA-SGGTKDLTASVIEEL   91 (148)
T ss_dssp             CCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHHH
T ss_pred             eCChHHHHHhhhcccccceeeeeeccHHHHHHHHHHhhhccccEEEECCCc-ccchhhHHHHHHHHc
Confidence            45677789999999998764431101233331      1368999999995 444444455555554

>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Megasphaera elsdenii [TaxId: 907]

Probab=86.27  E-value=2.8  Score=26.78  Aligned_cols=50  Identities=14%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             eEEEEEC-CCChHHH----HHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCC
Q 031223           26 PIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP   78 (163)
Q Consensus        26 ~Ilvid~-~~~~~~~----~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~   78 (163)
                      +|.||=. ..+++..    +.+.|++.|+++++++..+.+.+++.  ++|++|| |.|
T Consensus         1 ~V~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~-g~p   55 (137)
T d2fz5a1           1 MVEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVA--SKDVILL-GCP   55 (137)
T ss_dssp             CEEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEE-ECC
T ss_pred             CEEEEEECCChHHHHHHHHHHHHHHhcCCceEEeehhhHHHhhhh--ccceEEE-EEe
Confidence            3666632 2235555    45566678999999987766777776  7999888 544

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.48  E-value=0.22  Score=32.94  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=33.1

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeC-CCC-CHHHHhccCCCEEEe
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN-DEL-TVEELKRKNPRGVLI   74 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~-~~~-~~~~~~~~~~dgvvl   74 (163)
                      .++||+|||-.......+.+.|+..|....+... +.. ..+.+....||.|++
T Consensus         2 ~kirVLiVDD~~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~~~pDlvll   55 (140)
T d1a2oa1           2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTL   55 (140)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence            4579999997555666788889888865544332 210 123333458998886

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=84.46  E-value=0.93  Score=32.45  Aligned_cols=55  Identities=15%  Similarity=0.086  Sum_probs=33.3

Q ss_pred             CCCeEEEEEC--CCChHH----HHHHHHHHcCCEEEEEeCCCCCHHH-------HhccCCCEEEeCCC
Q 031223           23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVEE-------LKRKNPRGVLISPG   77 (163)
Q Consensus        23 ~~~~Ilvid~--~~~~~~----~~~~~l~~~G~~~~v~~~~~~~~~~-------~~~~~~dgvvl~GG   77 (163)
                      ...||.+|-.  ...|-.    -+.+++++.|+++.++.+...+.+.       +...++|+||+.+.
T Consensus         2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d~~~q~~~i~~~i~~~~dgIIi~~~   69 (316)
T d1tjya_           2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV   69 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence            4567888832  223433    3666778899998776433233321       22358999999775

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=83.96  E-value=1  Score=30.00  Aligned_cols=79  Identities=9%  Similarity=0.071  Sum_probs=45.5

Q ss_pred             CCCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHh--CCCCC
Q 031223           23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP   99 (163)
Q Consensus        23 ~~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~--~~~~P   99 (163)
                      ++.||||||........+.+.|...|+.+  +........-.....||.|++ -= ..|.-.+ ++.+.||+-  .+.+|
T Consensus        12 ~~~rILiVDD~~~~~~~l~~~L~~~g~~v--~~~~~~~~~~~~~~~~Dlill-D~-~mP~~dG~el~~~ir~~~~~~~iP   87 (153)
T d1w25a2          12 LGGRVLIVDDNERQAQRVAAELGVEHRPV--IESDPEKAKISAGGPVDLVIV-NA-AAKNFDGLRFTAALRSEERTRQLP   87 (153)
T ss_dssp             CSCEEEEECSCHHHHHHHHHHHTTTSEEE--EECCHHHHHHHHHSSCSEEEE-ET-TCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHHCCCEE--EEccHHHHHHHhcCCCCEEEE-EC-ccccccchHHHHHHHhccccccce
Confidence            56789999975445666888888888754  333211111122357998887 11 1122222 345666652  36799


Q ss_pred             EEEEeh
Q 031223          100 LFGVCM  105 (163)
Q Consensus       100 vLGIC~  105 (163)
                      ++-+.-
T Consensus        88 iI~lt~   93 (153)
T d1w25a2          88 VLAMVD   93 (153)
T ss_dssp             EEEEEC
T ss_pred             eEEeec
Confidence            987663

>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: STM3548-like
domain: Putative cytoplasmic protein STM3548
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.01  E-value=0.67  Score=33.62  Aligned_cols=39  Identities=15%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             HHHHHHHHHcCCEEEEEeCCC------CCHHHHhccCCCEEEeCCCC
Q 031223           38 YNLCQYMGELGYHFEVYRNDE------LTVEELKRKNPRGVLISPGP   78 (163)
Q Consensus        38 ~~~~~~l~~~G~~~~v~~~~~------~~~~~~~~~~~dgvvl~GG~   78 (163)
                      ..+.++|++.|++++.++.+.      .+.+++.  +||.|||+..+
T Consensus        33 ~~l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~--~yDvvIl~D~~   77 (246)
T d2gk3a1          33 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIG   77 (246)
T ss_dssp             HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCC
T ss_pred             HHHHHHHHhCCceEEEecchhhhhhCccCHHHHh--cCCEEEEecCc
Confidence            357899999999999886431      2345554  89999996643

>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor biosynthesis protein DIP0503 {Corynebacterium diphtheriae [TaxId: 1717]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Putative molybdenum cofactor biosynthesis protein DIP0503
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=82.60  E-value=0.73  Score=31.19  Aligned_cols=46  Identities=15%  Similarity=0.235  Sum_probs=24.4

Q ss_pred             cCCCEEEeCCCCCCCCCChhHHHHHHHh-CCCCCEEEEehHHHHHHHHhCCeee
Q 031223           67 KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIV  119 (163)
Q Consensus        67 ~~~dgvvl~GG~~~~~d~~~~~~~i~~~-~~~~PvLGIC~G~QlLa~a~Gg~v~  119 (163)
                      .++|.||.+||-+ +...+...+.+.++ ++.      |.|+...-+..+.+..
T Consensus        65 ~~~DlVittGG~g-~~~~D~T~~av~~~~~~~------~~~~~~~~~~~~~~~~  111 (163)
T d2g2ca1          65 QGARFIITAGGTG-IRAKNQTPEATASFIHTR------CEGLEQQILIHGSTHT  111 (163)
T ss_dssp             TTCSEEEEESCCS-SSTTCCHHHHHHTTCSEE------CHHHHHHHHHHC----
T ss_pred             cCCCEEEecCCCC-CCCccccccceeeeccee------cCcHHHHHHHHhcCCC
Confidence            3699999999955 44444455666653 322      3455444444444433

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.77  E-value=2.7  Score=28.33  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=37.6

Q ss_pred             CCeEEEEEC---------CCChHHHHHHHHHHc-----CCEEEE---EeCCCCCH-HHHh----ccCCCEEEeCCCCCCC
Q 031223           24 KNPIIVIDN---------YDSFTYNLCQYMGEL-----GYHFEV---YRNDELTV-EELK----RKNPRGVLISPGPGAP   81 (163)
Q Consensus        24 ~~~Ilvid~---------~~~~~~~~~~~l~~~-----G~~~~v---~~~~~~~~-~~~~----~~~~dgvvl~GG~~~~   81 (163)
                      ..|++||--         .|..-..+.++|.+.     |+++.-   ++.+.... +.+.    ..++|.||.+||-+ +
T Consensus         3 ~~rvaIitvsD~~~~G~~~D~~G~~l~~~l~~~~~~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~~~~D~IittGGtg-~   81 (161)
T d1uuya_           3 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTG-F   81 (161)
T ss_dssp             SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS-S
T ss_pred             ccEEEEEEECCCCCCCCcCCCchHHHHHHHHhhccccCCcEEEEEEEECCCHHHHHHHHHHhhhcCCceEEEEecCCC-C
Confidence            457777722         233444577788775     776553   33221011 1121    23699999999965 3


Q ss_pred             CCChhHHHHHHHh
Q 031223           82 QDSGISLQTVLEL   94 (163)
Q Consensus        82 ~d~~~~~~~i~~~   94 (163)
                      ...+-..+.+.++
T Consensus        82 g~~D~T~ea~~~~   94 (161)
T d1uuya_          82 TPRDVTPEATKKV   94 (161)
T ss_dssp             STTCCHHHHHHHH
T ss_pred             CcccCchhheeee
Confidence            3333344556553

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.39  E-value=6.5  Score=28.52  Aligned_cols=57  Identities=16%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             CCCeEEEEECCC---C-hH---HHHHHHHHHcCCEEEEEeCCCC-CHHH----HhccCCCEEEeCCCCC
Q 031223           23 NKNPIIVIDNYD---S-FT---YNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPG   79 (163)
Q Consensus        23 ~~~~Ilvid~~~---~-~~---~~~~~~l~~~G~~~~v~~~~~~-~~~~----~~~~~~dgvvl~GG~~   79 (163)
                      |..|++||-|--   . ..   ..+.+.|...|.+++++..+.. ...+    ....++|.||+.||-+
T Consensus         1 ~~kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG   69 (312)
T d2qv7a1           1 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDG   69 (312)
T ss_dssp             CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHH
T ss_pred             CCceEEEEECcCCCCCcHHHHHHHHHHHHHHCCCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            456787776521   1 12   2355677778999988875422 1222    2234799999999954

>d1wu2a3 c.57.1.2 (A:181-324) MoeA, central domain {Pyrococcus horikoshii, PH1647 [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: MoeA, central domain
species: Pyrococcus horikoshii, PH1647 [TaxId: 53953]

Probab=81.33  E-value=0.87  Score=30.38  Aligned_cols=46  Identities=15%  Similarity=0.030  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh------ccCCCEEEeCCCCC
Q 031223           34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPG   79 (163)
Q Consensus        34 ~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~------~~~~dgvvl~GG~~   79 (163)
                      +++...+...+++.|+++..+..-..+.+.+.      ..++|.||.+||.+
T Consensus        30 dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~DlvIttGG~s   81 (144)
T d1wu2a3          30 ETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA   81 (144)
T ss_dssp             CCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred             ecCchHHhhhhcccCcceeEEEEecchHHHHHHHHHHhhhcccEEEEccccc
Confidence            45666788999999998775532111233332      13799999999964

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=81.22  E-value=3.2  Score=27.42  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHcCCEEEEEe--CCCCCHHH----Hh----ccCCCEEEeCCCCCCCCCChhHHHHHHHh
Q 031223           36 FTYNLCQYMGELGYHFEVYR--NDELTVEE----LK----RKNPRGVLISPGPGAPQDSGISLQTVLEL   94 (163)
Q Consensus        36 ~~~~~~~~l~~~G~~~~v~~--~~~~~~~~----~~----~~~~dgvvl~GG~~~~~d~~~~~~~i~~~   94 (163)
                      .-..+..+|++.|+++.-..  +|+  .+.    +.    ..++|.||.+||.+. ...+...+.+.++
T Consensus        21 ngp~L~~~l~~~G~~v~~~~iv~D~--~~~i~~~l~~~~~~~~~DlIvTtGGts~-g~~D~t~~a~~~~   86 (155)
T d1y5ea1          21 SGQLLHELLKEAGHKVTSYEIVKDD--KESIQQAVLAGYHKEDVDVVLTNGGTGI-TKRDVTIEAVSAL   86 (155)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEECSS--HHHHHHHHHHHHTCTTCSEEEEECCCSS-STTCCHHHHHHTT
T ss_pred             cHHHHHHHHHhcCCEEEEeeeecch--HHHHHHHHHHHHhccCCCEEEEeeeeec-ccccccchhhhhh
Confidence            34458899999999877432  232  222    21    236899999999653 3222344455554

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=81.16  E-value=2.3  Score=29.01  Aligned_cols=82  Identities=18%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             hcCCCCCeEEEE----ECCCChHHHHHHHHHHcCCEEEEEeCCCCCHHHHh----ccCCCEEEeCCCCCCCC-CChhHHH
Q 031223           19 KSKNNKNPIIVI----DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQ   89 (163)
Q Consensus        19 ~~~~~~~~Ilvi----d~~~~~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~----~~~~dgvvl~GG~~~~~-d~~~~~~   89 (163)
                      +..+..+||++-    |.++--...+.+.|++.|+++.....+ .+.+++.    ..++|.|.||.-..... ....+.+
T Consensus        32 ~~~gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg~~-~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~  110 (168)
T d7reqa2          32 QAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLF-QTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK  110 (168)
T ss_dssp             HHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECCTT-BCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHH
T ss_pred             HhhCCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCCCc-CcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHH
Confidence            344566788777    433323456888999999998776655 4555542    35899999985432211 1123455


Q ss_pred             HHHHhC-CCCCEE
Q 031223           90 TVLELG-PTVPLF  101 (163)
Q Consensus        90 ~i~~~~-~~~PvL  101 (163)
                      .+++.. .++||+
T Consensus       111 ~L~~~g~~~v~Vi  123 (168)
T d7reqa2         111 ELDKLGRPDILIT  123 (168)
T ss_dssp             HHHHTTCTTSEEE
T ss_pred             HHHhcCCCCeEEE
Confidence            555543 445654

>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Gephyrin N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=4  Score=27.23  Aligned_cols=69  Identities=23%  Similarity=0.293  Sum_probs=37.8

Q ss_pred             CCeEEEEEC---------CCChHHHHHHHHHH---cCCEEEEEe--CCCC-C-HHHH----hccCCCEEEeCCCCCCCCC
Q 031223           24 KNPIIVIDN---------YDSFTYNLCQYMGE---LGYHFEVYR--NDEL-T-VEEL----KRKNPRGVLISPGPGAPQD   83 (163)
Q Consensus        24 ~~~Ilvid~---------~~~~~~~~~~~l~~---~G~~~~v~~--~~~~-~-~~~~----~~~~~dgvvl~GG~~~~~d   83 (163)
                      ++|+.||--         .|.+...+.++|++   .|+++....  +|+. . .+.+    ...++|.||.+||-+ +.+
T Consensus         2 ~~rv~iit~gDe~~~G~~~D~ng~~L~~~l~~~~~~G~~v~~~~iV~Dd~~~i~~al~~~~~~~~~D~ViTtGG~g-~~~   80 (169)
T d1jlja_           2 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTG-FAP   80 (169)
T ss_dssp             CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCS-SST
T ss_pred             ceEEEEEEeCCCcccCCcCCccHHHHHHHHHhhccCCcEEEEEEEeccchhhHHHHHHHHhhcccccEEEEecCcc-ccc
Confidence            467777722         23445568888888   488765432  2321 1 1112    124799999999965 333


Q ss_pred             ChhHHHHHHH
Q 031223           84 SGISLQTVLE   93 (163)
Q Consensus        84 ~~~~~~~i~~   93 (163)
                      .+-..+.+.+
T Consensus        81 ~D~T~~a~~~   90 (169)
T d1jlja_          81 RDVTPEATKE   90 (169)
T ss_dssp             TCCHHHHHHH
T ss_pred             cccchhheeh
Confidence            3333444544

>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Toxic hairpin
superfamily: Heat-stable enterotoxin B
family: Heat-stable enterotoxin B
domain: Heat-stable enterotoxin B
species: Escherichia coli [TaxId: 562]

Probab=80.58  E-value=0.07  Score=28.21  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.5

Q ss_pred             CEEEEehHHHHHHHHhC
Q 031223           99 PLFGVCMGLQCIGEAFG  115 (163)
Q Consensus        99 PvLGIC~G~QlLa~a~G  115 (163)
                      -..|.|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T d1ehsa_          31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            44688999999987655

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.28  E-value=0.5  Score=32.58  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             CCeEEEEECCCChHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhccCCCEEEeCCCCCCCCCCh-hHHHHHHHhCCCCCEE
Q 031223           24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF  101 (163)
Q Consensus        24 ~~~Ilvid~~~~~~~~~~~~l~~~G~~~~v~~~~~-~~~~~~~~~~~dgvvl~GG~~~~~d~~-~~~~~i~~~~~~~PvL  101 (163)
                      ..||+|||-...+...+.+.|+..|+++.-...+. ...+-+...+||.|++ .= ..|...+ ++.+.+++. ...||+
T Consensus         3 p~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~~~~~pDlvll-Di-~mP~~dG~e~~~~ir~~-~~~pIi   79 (190)
T d1s8na_           3 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM-DV-KMPRRDGIDAASEIASK-RIAPIV   79 (190)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEE-ES-SCSSSCHHHHHHHHHHT-TCSCEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhcCCCCEEEE-ec-cccCcchHHHHHHHHhc-CCCCEE
Confidence            46899998766677778899999999875333221 1122233458998887 11 1122222 344455553 458988


Q ss_pred             EEehHH
Q 031223          102 GVCMGL  107 (163)
Q Consensus       102 GIC~G~  107 (163)
                       ++-++
T Consensus        80 -~lTa~   84 (190)
T d1s8na_          80 -VLTAF   84 (190)
T ss_dssp             -EEEEG
T ss_pred             -EEeCC
Confidence             45453