Citrus Sinensis ID: 031232

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccEEEEEEEEcccccEEcccccccccccHHHHHHHHHHHHcccEEEEEccccEEEEEEEccccccEEEEEEEEEEEEEccccccccccEEEEEccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccEccccccccEEEEEEccccccEEcccccEEEEEEEEEEEEEcccccccccccEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHcccEEEEEcccccEEEEccccccccEEEEEEEEEEHHHHHcccHHHccccEEEEEEccEHHcc
Coil and Loop (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRyqkgrrqvvgcipyrykCVKQSLDINEEDLEVLVISsqkgkgmlfpkggweIDESIQEAALRETIEEAGVTGIVECELlgewnfksrahntdyqgymfplLVQDQlaewpeknvrsRKWVctfmpvtcfl
Flexible Loop (DISEMBL)
MVALVAQETivslvtpenvvgnlvsrtgrhlqryqkgrrqvvgcipyRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Low Complexity Region (SEG)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Disordered region (IsUnstruct)
***LVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCF*
Disordered Region (DISOPRED)
*********************************YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Disordered Region (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Disordered Region (DISPRO)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q8VY81	198	Nudix hydrolase 21, chlor	yes	no	0.877	0.722	0.592	4e-41
Q9LE73	207	Nudix hydrolase 4 OS=Arab	no	no	0.846	0.666	0.586	4e-40
Q9LQU5	176	Nudix hydrolase 18, mitoc	no	no	0.785	0.727	0.603	3e-39
Q9ZU95	182	Nudix hydrolase 17, mitoc	no	no	0.785	0.703	0.603	5e-39
Q52K88	202	Nudix hydrolase 13, mitoc	no	no	0.815	0.658	0.452	2e-27
Q93ZY7	203	Nudix hydrolase 12, mitoc	no	no	0.779	0.625	0.462	1e-26
Q9LHK1	180	Nudix hydrolase 16, mitoc	no	no	0.791	0.716	0.489	2e-25
Q09790	210	Diphosphoinositol polypho	yes	no	0.490	0.380	0.358	2e-06
O95989	172	Diphosphoinositol polypho	yes	no	0.619	0.587	0.319	3e-05
Q9JI46	168	Diphosphoinositol polypho	yes	no	0.546	0.529	0.360	3e-05

>sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 106/152 (69%), Gaps = 9/152 (5%)

Query: 5   VAQETIVSLVTPENVVGNLVSRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDL 63
           +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++
Sbjct: 26  IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEI 79

Query: 64  EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 122
           EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H
Sbjct: 80  EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRH 138

Query: 123 NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVC 154
              + G+MFPLLV  Q   WPE   R RKWV 
Sbjct: 139 TMIHDGHMFPLLVSQQFEIWPESEFRQRKWVS 170

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1

 Score =  163 bits (413), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 108/145 (74%), Gaps = 7/145 (4%)

Query: 14  VTPENV--VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVIS 69
           V P  +  V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S
Sbjct: 32  VVPAQIEKVVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVS 89

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           +QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GY
Sbjct: 90  AQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGY 148

Query: 130 MFPLLVQDQLAEWPEKNVRSRKWVC 154
           MF LLV  +   WPE  +R R+WV 
Sbjct: 149 MFALLVSQEFERWPEAEMRQRRWVS 173

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9LQU5|NUD18_ARATH Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 104/131 (79%), Gaps = 3/131 (2%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct: 4   LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query: 83  WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
           WE+DES++EAA RE++EEAGV G VE + LG+W+F S++  T Y+G+MFP+LV+++L  W
Sbjct: 62  WELDESVEEAASRESLEEAGVVGNVERQ-LGKWDFLSKSKGTFYEGFMFPMLVKEELELW 120

Query: 143 PEKNVRSRKWV 153
           PE+++R R W+
Sbjct: 121 PEQHLRQRIWM 131

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1

 Score =  159 bits (403), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 102/131 (77%), Gaps = 3/131 (2%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           L SRTGR  QRY KGRRQVVGC+PYR+K +     I++E +EVLVISSQKG  ++FPKGG
Sbjct: 9   LASRTGRQFQRYNKGRRQVVGCVPYRFK-LSNDGKISDE-VEVLVISSQKGHALMFPKGG 66

Query: 83  WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
           WE+DES++EAA RE +EEAGV G VE + LG+W+F S++  T Y+G MFP+LV +QL  W
Sbjct: 67  WELDESVEEAASRECLEEAGVLGNVEHQ-LGKWDFLSKSRGTYYEGLMFPMLVTEQLELW 125

Query: 143 PEKNVRSRKWV 153
           PE++VR R W+
Sbjct: 126 PEQHVRQRIWM 136

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q52K88|NUD13_ARATH Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 93/146 (63%), Gaps = 13/146 (8%)

Query: 20  VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKG 75
           + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     
Sbjct: 1   MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHD 59

Query: 76  MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--------Q 127
           ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +
Sbjct: 60  LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCK 119

Query: 128 GYMFPLLVQDQLAEWPEKNVRSRKWV 153
           GYMF L V+++LA WPE++ R R+W+
Sbjct: 120 GYMFALEVKEELAIWPEQDDRERRWL 145

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q93ZY7|NUD12_ARATH Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 18/145 (12%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGK 74
           L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS    
Sbjct: 4   LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRH 59

Query: 75  GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQ------G 128
            ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   + +      G
Sbjct: 60  DLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKG 119

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWV 153
           YMF L V ++L +WPE+  R R+W+
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWL 144

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LHK1|NUD16_ARATH Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 95/141 (67%), Gaps = 12/141 (8%)

Query: 22  NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
           +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct: 3   DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 79  PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFP 132
           PKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ 
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119

Query: 133 LLVQDQLAEWPEKNVRSRKWV 153
           L V+++LA WPE   R+RKW+
Sbjct: 120 LYVKEELATWPEHETRTRKWL 140

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q09790|APS1_SCHPO Diphosphoinositol polyphosphate phosphohydrolase aps1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aps1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 12/92 (13%)

Query: 22  NLVSRTGRHLQRYQ--KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFP 79
           ++ SR GR   R+    G R   G +         +L  ++  + +LV S++K    + P
Sbjct: 23  SMTSREGRTKNRFNPITGARLAAGVV---------ALSADKRKV-LLVSSAKKHPSWVVP 72

Query: 80  KGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
           KGGWE DES+Q+AALRE  EE G+ G +   L
Sbjct: 73  KGGWEADESVQQAALREGWEEGGLVGHITRSL 104

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate). Also catalyzes the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O95989|NUDT3_HUMAN Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)

Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 16  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 65

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKW 152
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W
Sbjct: 66  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREW 119

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JI46|NUDT3_MOUSE Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Mus musculus GN=Nudt3 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 8/97 (8%)

Query: 59  NEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
           +E + EVL++SS +     + P GG E +E    AA+RE  EEAGV G +   L+G +  
Sbjct: 28  SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFEN 86

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKW 152
           + R H T    Y++ L+V + L +W +  N+ R R+W
Sbjct: 87  QERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREW 119

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate (By similarity). Acts as a negative regulator of the ERK1/2 pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
255580361	193	diphosphoinositol polyphosphate phosphoh	0.926	0.782	0.679	1e-51
351724865	190	uncharacterized protein LOC100305863 [Gl	0.871	0.747	0.732	1e-50
217075388	195	unknown [Medicago truncatula]	0.871	0.728	0.712	2e-50
357460851	195	Nudix hydrolase [Medicago truncatula] gi	0.871	0.728	0.712	2e-50
356553271	190	PREDICTED: nudix hydrolase 17, mitochond	0.877	0.752	0.703	2e-50
351726568	211	uncharacterized protein LOC100500105 [Gl	0.877	0.677	0.698	4e-50
449445094	185	PREDICTED: nudix hydrolase 18, mitochond	0.883	0.778	0.673	5e-50
224065132	193	predicted protein [Populus trichocarpa]	0.920	0.777	0.655	1e-49
356569788	199	PREDICTED: nudix hydrolase 17, mitochond	0.865	0.708	0.703	5e-49
224079516	188	predicted protein [Populus trichocarpa]	0.889	0.771	0.629	3e-47

>gi|255580361|ref|XP_002531008.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis] gi|223529406|gb|EEF31368.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 126/162 (77%), Gaps = 11/162 (6%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKG-RRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+QET+       NV   LVSRTGRHLQRY KG RRQVVGCIPYRYK  +Q+    
Sbjct: 1   MVALVSQETV-------NVA--LVSRTGRHLQRYSKGGRRQVVGCIPYRYKTGEQNYKEI 51

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
              LEVLVISSQKGKG+LFPKGGWE+DE+I+EAA RET+EEAGV GIVECE LG+W+FKS
Sbjct: 52  GGGLEVLVISSQKGKGLLFPKGGWELDETIKEAASRETLEEAGVRGIVECE-LGKWSFKS 110

Query: 120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161
           + H+T Y+GYMFPLLVQ+QL  WPEKNVR RKW+       C
Sbjct: 111 KTHDTFYEGYMFPLLVQEQLEFWPEKNVRERKWMSVADAREC 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724865|ref|NP_001237840.1| uncharacterized protein LOC100305863 [Glycine max] gi|255626815|gb|ACU13752.1| unknown [Glycine max]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 124/146 (84%), Gaps = 4/146 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ-SLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   Q SLD+ EE LEVLVI
Sbjct: 1   MVALVSRENVV-VLVSRTGRELQRYRKGRRQVVGCIPYRYKIGDQTSLDVQEE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           +SQKGKGMLFPKGGWE+DES +EAALRETIEEAGV G VE + LG+W+FKS+ H+T Y+G
Sbjct: 59  TSQKGKGMLFPKGGWELDESKKEAALRETIEEAGVRGTVEGK-LGKWSFKSKTHDTFYEG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWVC 154
           YMFPLLVQ+QL  WPE+NVR R W+ 
Sbjct: 118 YMFPLLVQEQLELWPEQNVRQRIWMS 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075388|gb|ACJ86054.1| unknown [Medicago truncatula]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 126/146 (86%), Gaps = 4/146 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE + LG+W+FKS+ ++T Y G
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGK-LGKWSFKSKTYDTLYDG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWVC 154
           YMFPLLVQ++L  WPE+N+R R+W+ 
Sbjct: 118 YMFPLLVQEELEFWPEQNLRQRRWMS 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460851|ref|XP_003600707.1| Nudix hydrolase [Medicago truncatula] gi|355489755|gb|AES70958.1| Nudix hydrolase [Medicago truncatula] gi|388507980|gb|AFK42056.1| unknown [Medicago truncatula]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 126/146 (86%), Gaps = 4/146 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE + LG+W+FKS+ ++T Y G
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGK-LGKWSFKSKTYDTLYDG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWVC 154
           YMFPLLVQ++L  WPE+N+R R+W+ 
Sbjct: 118 YMFPLLVQEELEFWPEQNLRQRRWMS 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553271|ref|XP_003544981.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 122/145 (84%), Gaps = 2/145 (1%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           +V+LV+ +NVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   Q+    +E+LEVLVIS
Sbjct: 1   MVALVSQDNVVA-LVSRTGRELQRYRKGRRQVVGCIPYRYKIGDQTSLEAQEELEVLVIS 59

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           SQKGKGMLFPKGGWE+DES +EAALRET+EEAGV G VE + LG+W+FKS+ H+T Y+GY
Sbjct: 60  SQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGTVEGK-LGKWSFKSKTHDTFYEGY 118

Query: 130 MFPLLVQDQLAEWPEKNVRSRKWVC 154
           MFPLLVQ+QL  WPE+NVR R W+ 
Sbjct: 119 MFPLLVQEQLEFWPEQNVRQRIWMS 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726568|ref|NP_001236875.1| uncharacterized protein LOC100500105 [Glycine max] gi|255629193|gb|ACU14941.1| unknown [Glycine max]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 123/146 (84%), Gaps = 3/146 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V++V+ ENV   LVSRTGR LQRY+KGRRQVVGCIPYR+K   K SLD+  ++LEVLVI
Sbjct: 1   MVAVVSQENVAA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTSLDVVSDELEVLVI 59

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIV  + LG+W+FKS+ H+T Y+G
Sbjct: 60  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGK-LGKWSFKSKTHDTFYEG 118

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWVC 154
           YMFPLLVQ+QL  WPE+NVR R W+ 
Sbjct: 119 YMFPLLVQEQLEFWPEQNVRQRIWMS 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445094|ref|XP_004140308.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus] gi|449529539|ref|XP_004171757.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 121/156 (77%), Gaps = 12/156 (7%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+Q+ +VSLV          SRTGRHLQRY  +GRRQVVGCIPYRYK  K+S   N
Sbjct: 1   MVALVSQDNMVSLV----------SRTGRHLQRYDIRGRRQVVGCIPYRYKTTKKSTLDN 50

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
            E+LEVLVISSQKGKGMLFPKGGWE DESI EAA RET+EEAGV GIV+ E LG W+FKS
Sbjct: 51  IEELEVLVISSQKGKGMLFPKGGWETDESITEAASRETLEEAGVRGIVQGE-LGSWSFKS 109

Query: 120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCT 155
           + ++T Y+GYMFPLLV++QL  WPEKN R R W+  
Sbjct: 110 KTYDTFYEGYMFPLLVKEQLEFWPEKNFRQRVWMSA 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065132|ref|XP_002301684.1| predicted protein [Populus trichocarpa] gi|222843410|gb|EEE80957.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 115/151 (76%), Gaps = 1/151 (0%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            +LV+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRYK    +    E++LEVLVISS
Sbjct: 3   TALVSQENVVASLVSRTGRHLQRYDKGRRQVVGCIPYRYKNGSSNTSEVEDELEVLVISS 62

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 130
           QKGKGMLFPKGGWE+DE+I++AA RET EEAGV G VE + LG W F+SR H TDY GY+
Sbjct: 63  QKGKGMLFPKGGWELDETIKQAASRETYEEAGVKGNVEHQ-LGHWTFQSRTHGTDYDGYL 121

Query: 131 FPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161
           FPL V++ L  WPEKN R RKW+       C
Sbjct: 122 FPLHVKEVLDFWPEKNNRQRKWMSVEEAREC 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569788|ref|XP_003553078.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 126/145 (86%), Gaps = 4/145 (2%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQS-LDINEEDLEVLVI 68
           +V++V+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYR+K  +++ LD+++E LEVLVI
Sbjct: 1   MVAVVSQENVVA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTCLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQG 128
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIV  + LG+W+FKS+ H+T Y+G
Sbjct: 59  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGK-LGKWSFKSKTHDTFYEG 117

Query: 129 YMFPLLVQDQLAEWPEKNVRSRKWV 153
           YMFPLLVQ+QL  WPE+NVR R W+
Sbjct: 118 YMFPLLVQEQLEFWPEQNVRQRIWM 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079516|ref|XP_002305883.1| predicted protein [Populus trichocarpa] gi|222848847|gb|EEE86394.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 114/151 (75%), Gaps = 6/151 (3%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            ++V+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRY   K      E+  +VLVISS
Sbjct: 3   AAVVSQENVVASLVSRTGRHLQRYNKGRRQVVGCIPYRYTKGK-----GEDGFQVLVISS 57

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYM 130
           QKGKGMLFPKGGWE DE+I++ A+RET EEAGV G++E + LGEW F+SR H TDY+GYM
Sbjct: 58  QKGKGMLFPKGGWESDETIKQGAVRETYEEAGVKGVLEPQ-LGEWTFQSRTHGTDYEGYM 116

Query: 131 FPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC 161
           FPL V+++L  WPEK  R RKW+       C
Sbjct: 117 FPLRVKEELDFWPEKTNRLRKWMSVTEAREC 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2014164	207	NUDT4 "nudix hydrolase homolog	0.815	0.642	0.611	3.3e-40
TAIR|locus:2206835	198	NUDT21 "nudix hydrolase homolo	0.871	0.717	0.602	3.3e-40
TAIR|locus:2006817	176	NUDT18 "nudix hydrolase homolo	0.785	0.727	0.603	1.3e-38
TAIR|locus:2065440	182	NUDT17 "nudix hydrolase homolo	0.785	0.703	0.603	2.1e-38
TAIR|locus:2091275	180	NUDT16 "nudix hydrolase homolo	0.791	0.716	0.496	8.8e-31
TAIR|locus:2090842	202	NUDX13 "nudix hydrolase homolo	0.822	0.663	0.455	1.9e-26
TAIR|locus:2010331	203	NUDT12 "nudix hydrolase homolo	0.797	0.640	0.464	6.6e-26
UNIPROTKB|G4MKT5	168	MGG_06680 "Nudix/MutT family p	0.736	0.714	0.356	7.9e-14
CGD|CAL0000145	192	orf19.4229 [Candida albicans (	0.773	0.656	0.358	1.9e-12
ASPGD|ASPL0000000420	159	ndxD [Emericella nidulans (tax	0.742	0.761	0.359	2.4e-12

TAIR|locus:2014164 NUDT4 "nudix hydrolase homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 85/139 (61%), Positives = 107/139 (76%)

Query:    17 ENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGK 74
             E VV +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGK
Sbjct:    38 EKVV-SLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGK 94

Query:    75 GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL 134
             GMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LL
Sbjct:    95 GMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALL 153

Query:   135 VQDQLAEWPEKNVRSRKWV 153
             V  +   WPE  +R R+WV
Sbjct:   154 VSQEFERWPEAEMRQRRWV 172

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2206835 NUDT21 "nudix hydrolase homolog 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 91/151 (60%), Positives = 107/151 (70%)

Query:     5 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDL 63
             +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK  K        ++
Sbjct:    26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK--KHG----GGEI 79

Query:    64 EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH 122
             EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H
Sbjct:    80 EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRH 138

Query:   123 NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
                + G+MFPLLV  Q   WPE   R RKWV
Sbjct:   139 TMIHDGHMFPLLVSQQFEIWPESEFRQRKWV 169

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2006817 NUDT18 "nudix hydrolase homolog 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 79/131 (60%), Positives = 104/131 (79%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct:     4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query:    83 WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
             WE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  W
Sbjct:    62 WELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELW 120

Query:   143 PEKNVRSRKWV 153
             PE+++R R W+
Sbjct:   121 PEQHLRQRIWM 131

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2065440 NUDT17 "nudix hydrolase homolog 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 79/131 (60%), Positives = 101/131 (77%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGG
Sbjct:     9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGG 66

Query:    83 WEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW 142
             WE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  W
Sbjct:    67 WELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELW 125

Query:   143 PEKNVRSRKWV 153
             PE++VR R W+
Sbjct:   126 PEQHVRQRIWM 136

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2091275 NUDT16 "nudix hydrolase homolog 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/141 (49%), Positives = 96/141 (68%)

Query:    22 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
             +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct:     3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--QGY----MFP 132
             PKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++  +G     M+ 
Sbjct:    61 PKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119

Query:   133 LLVQDQLAEWPEKNVRSRKWV 153
             L V+++LA WPE   R+RKW+
Sbjct:   120 LYVKEELATWPEHETRTRKWL 140

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2090842 NUDX13 "nudix hydrolase homolog 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 66/145 (45%), Positives = 94/145 (64%)

Query:    20 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRY-KCVKQ-SLDIN-EEDLEVLVISSQKGKGM 76
             + NL +RTGR  QRY    R V GCIPYR  K  ++ S  ++ E  L+VL+ISS     +
Sbjct:     1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDL 60

Query:    77 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY--------QG 128
             +FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +G
Sbjct:    61 VFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKG 120

Query:   129 YMFPLLVQDQLAEWPEKNVRSRKWV 153
             YMF L V+++LA WPE++ R R+W+
Sbjct:   121 YMFALEVKEELAIWPEQDDRERRWL 145

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

TAIR|locus:2010331 NUDT12 "nudix hydrolase homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 66/142 (46%), Positives = 88/142 (61%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED----LEVLVISSQKGKGMLF 78
             L SRTGR  QRY    R V GCIPYR     ++ + +  D    LEVL++SS     ++F
Sbjct:     4 LSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVF 63

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQ------GYMF 131
             PKGGWE DE++ EAA RE IEEAGV GI+  EL LG W F+S++   + +      GYMF
Sbjct:    64 PKGGWEDDETVLEAASREAIEEAGVKGILR-ELPLGVWEFRSKSSTVEDECLGGCKGYMF 122

Query:   132 PLLVQDQLAEWPEKNVRSRKWV 153
              L V ++L +WPE+  R R+W+
Sbjct:   123 ALKVTEELEDWPERKNRERRWL 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

UNIPROTKB|G4MKT5 MGG_06680 "Nudix/MutT family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 51/143 (35%), Positives = 73/143 (51%)

Query:    25 SRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW 83
             SRTGR  QRY  KG R V G +            ++E+   VL+  S + KG + PKGGW
Sbjct:    16 SRTGRSKQRYNSKGERLVAGVVA-----------LSEDKEYVLLTQSTRRKGWVLPKGGW 64

Query:    84 EIDESIQEAALRETIEEAGVTGIVECEL--LGEWNFKSRAHNTDYQG-------YMFPLL 134
             E DE   EAA RE  EEAG+   ++ +L  + E   K+ + +    G       + +   
Sbjct:    65 ETDEECTEAAEREAWEEAGIVVTIDYDLGQIEETRVKTSSKSAK-SGKREKAIYHFYEAT 123

Query:   135 VQDQLAEWPEKNVRSRKWVCTFM 157
             V  +  +WPEK+ R RKW+ TF+
Sbjct:   124 VTSEEQDWPEKDKRQRKWM-TFV 145

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0000145 orf19.4229 [Candida albicans (taxid:5476)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 57/159 (35%), Positives = 82/159 (51%)

Query:    16 PENVVGNLVSRTGRHLQRY--QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG 73
             P   V +  +R GR  QRY  + G R V GC+     C+ ++ D      ++++ISS K 
Sbjct:    10 PNLPVKSQTAREGRENQRYNSETGARIVAGCM-----CLNETKD------KIIMISSSKH 58

Query:    74 KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL--------------LGEWNFK 118
             K   + PKGG E+DES  E A+RET EEAGV GI+  +L               GE++  
Sbjct:    59 KNRWIVPKGGNELDESELETAVRETWEEAGVEGIIIKKLPVVLDSRGSQAPVIKGEFDPD 118

Query:   119 SRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTF 156
                  +++  + F L V DQL+  WPE   R R+W CT+
Sbjct:   119 VATPKSEF--HFFELQV-DQLSTSWPEMKKRQRRW-CTY 153

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

ASPGD|ASPL0000000420 ndxD [Emericella nidulans (taxid:162425)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 51/142 (35%), Positives = 71/142 (50%)

Query:    20 VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLF 78
             V ++ SR GR  QRY  KG R V G +P             ++ L +++ S+ +G G + 
Sbjct:     5 VRSMESRVGRKNQRYGSKGERLVAGVVPLS----------KDKSLVMMIQSAGRG-GWVL 53

Query:    79 PKGGWEIDE-SIQEAALRETIEEAGVTGIVECEL--LGEWN----FKSRAHNTDYQGYMF 131
             PKGGWE DE S Q+AA RE  EEAGV   V  +L  + +        S +    YQ   F
Sbjct:    54 PKGGWETDEASAQQAACREAWEEAGVICTVLRDLGTISDMRPSTMLTSNSPRASYQ--FF 111

Query:   132 PLLVQDQLAEWPEKNVRSRKWV 153
              + V  +   WPE + R R+WV
Sbjct:   112 EVTVDREEDRWPEMHKRRRQWV 133

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY81	NUD21_ARATH	3, ., 6, ., 1, ., -	0.5921	0.8773	0.7222	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.921
3rd Layer	3.6.1.13	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2208 hypothetical protein (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	7e-35
pfam00293	133	pfam00293, NUDIX, NUDIX domain	3e-13
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-08
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-07
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	8e-06
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-05
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	2e-05
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	7e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-04
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	1e-04
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	6e-04
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	6e-04
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	8e-04
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	0.003
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	0.004
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	0.004
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	0.004
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  117 bits (296), Expect = 7e-35
 Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 40  QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIE 99
              G IPYR             ++EVL+++S++    + PKGG E DES  EAA RE  E
Sbjct: 1   LQAGAIPYR---------ETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWE 51

Query: 100 EAGVTGIVECELLGEWNFKSRAHN--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
           EAGV G +    LG + ++ R+ N     +  +FPL V ++L EWPE + R RKW 
Sbjct: 52  EAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWF 107

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 38  RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAA 93
           RR+ VG +               ED EVL++   +          P G  E  ES +EAA
Sbjct: 1   RRRAVGVVLLN------------EDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAA 48

Query: 94  LRETIEEAGVTGIVECELL-GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 152
           +RE  EE G+  ++   L   E+    R        ++  LL  +   +  E  V   +W
Sbjct: 49  VRELEEETGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRW 108

Query: 153 V 153
           V
Sbjct: 109 V 109

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 61  EDLEVLVISSQKGKGML--FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
           ED  VL++      G L   P GG E  E+++EAA+RE  EE G+   V   LLG +  +
Sbjct: 10  EDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL-RLLGVYEVE 68

Query: 119 SRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWV 153
           S         ++F   +        P   +   +WV
Sbjct: 69  SPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWV 104

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 48  RYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQ-EAALRETIEEAGVTG 105
                   L   +   EVL+   +   G+   P G  E  E +  EAA RE  EE G+  
Sbjct: 9   VRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRV 68

Query: 106 IV-ECELLGEWNF---KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
                ELLGE+        +         F   V D LA   E      + +
Sbjct: 69  KDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEEL 120

Length = 161

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           G I YR             ++E L++ +  G    FPKG  E  E   EAALRET EE G
Sbjct: 6   GAIIYRRLN---------NEIEYLLLQASYG-HWDFPKGHVEPGEDDLEAALRETEEETG 55

Query: 103 VT 104
           +T
Sbjct: 56  IT 57

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 56  LDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
              ++  +EVL+I   +G     PKG  E  E+  EAA+RE  EE G+   V   L
Sbjct: 9   FRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPL 64

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 66  LVISSQKGKGMLF--PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN 123
           L++  +   G++F  P G  E  ES+ EAA+RET+EE G   +    LLG + + +   +
Sbjct: 14  LLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWH-VEPTALLGIYQWTAPDSD 72

Query: 124 TDYQGYMF 131
           T Y  + F
Sbjct: 73  TTYLRFAF 80

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 55  SLDINEEDLEVLVISSQKGKGM--LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112
           S+ I  +  E+L+I   K      +FP GG E  E+ +EAA RE +EE G+   VE   L
Sbjct: 4   SIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFL 63

Query: 113 GEWNFKSRAH 122
                    H
Sbjct: 64  IVNQNGRTEH 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTG 105
            P G  +  E  +EAA RE  EE G   
Sbjct: 33  LPAGLIDPGEDPEEAARRELEEETGYEA 60

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 66  LVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-------GIVECELLGEWNFK 118
           L++   K +G  FP G  E  E+I+EAA RE  EE G         G  + +L       
Sbjct: 13  LLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFET 72

Query: 119 S 119
            
Sbjct: 73  L 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 23/53 (43%), Positives = 28/53 (52%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
            D  VL++    G G   P GG E  E+  EAA RE +EE G+   V  ELLG
Sbjct: 10  ADGRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLG 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 18/77 (23%)

Query: 64  EVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVTGIVECELLG--E 114
           +VL+++ +KG G     GGW       E  E+ +E A+RE  EE G+T I   +L+G  +
Sbjct: 13  KVLLLNRKKGPGW----GGWNGPGGKVEPGETPEECAIRELKEETGLT-IDNLKLVGIIK 67

Query: 115 WNFKSRAHNTDYQGYMF 131
           + F       + +  +F
Sbjct: 68  FPFPGE----EERYGVF 80

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE---W-------NFKSRAHNTDYQ 127
           FP+GG +  E  ++AALRE  EE G+      E++ E   W         K +     Y+
Sbjct: 31  FPQGGIDEGEDPEQAALRELEEETGLDP-DSVEIIAEIPDWLRYDLPPELKLKIWGGRYR 89

Query: 128 G 128
           G
Sbjct: 90  G 90

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 58  INEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGV 103
           +   +  +L++  +++ G G    P G  EI E+++EAA RE  EE G+
Sbjct: 16  LIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL 64

Length = 145

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 81  GGW-EIDESIQEAALRETIEEAGVTGIVE 108
           GGW ++  S  E  ++E  EE G+   V 
Sbjct: 30  GGWADVGLSPAENVVKEVKEETGLDVKVR 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
           N E LE+LV       G    KG  E  E+ + AALRE  EE+G+   +   +L  W  +
Sbjct: 10  NGEVLELLVFE-HPLAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERR 68

Query: 119 SRAHNTDYQGYMFPLLVQDQ 138
                     +   L   DQ
Sbjct: 69  FYQKR---HFWHLTLCEVDQ 85

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 61  EDLE-VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           EDL+ VL++   K K   FPKG    DE   + A+RE  EE G
Sbjct: 11  EDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETG 53

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 61  EDLEVLVISSQKG--KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVEC-ELLG--E 114
            D ++L+I    G  +G    P GG E  ES +EA  RE +EE G+T  VE    LG   
Sbjct: 9   RDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLT--VEIGRRLGSAS 66

Query: 115 WNFKSRAHNTDYQG 128
             F S   + D   
Sbjct: 67  RYFYSPDGDYDAHH 80

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 58  INEEDLEVLVISS-QKGKGML-FPKGGWEIDESIQEAALRETIEEAGV 103
           +NE++ EVLV+    K       P G  +  E I + A+RE +EE G+
Sbjct: 10  LNEKN-EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.91
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.89
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.87
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.87
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.86
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.86
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.85
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.85
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.85
PLN02325	144	nudix hydrolase	99.85
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.85
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.85
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.84
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.84
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.84
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.84
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.84
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.83
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.83
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.83
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.83
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.83
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.83
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.82
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.82
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.82
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.82
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.81
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.81
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.81
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.81
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.81
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.81
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.81
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.8
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.8
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.8
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.8
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.79
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.79
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.79
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.78
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.78
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.76
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.76
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.76
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.75
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.75
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.74
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.74
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.74
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.74
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.73
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.73
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.72
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.72
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.71
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.71
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.69
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.68
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.68
PRK10707	190	putative NUDIX hydrolase; Provisional	99.68
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.67
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.67
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.67
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.65
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.64
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.64
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.64
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.64
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.64
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.64
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.63
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.6
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.56
PLN02709	222	nudix hydrolase	99.52
PRK08999	312	hypothetical protein; Provisional	99.48
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.48
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.45
PLN03143	291	nudix hydrolase; Provisional	99.36
PLN02791	770	Nudix hydrolase homolog	99.21
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.17
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.16
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	99.1
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.03
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.94
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.85
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.73
PLN02839	372	nudix hydrolase	98.6
KOG4195	275	consensus Transient receptor potential-related cha	98.39
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.27
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.9
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.6
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.5
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.42
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.05
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	96.34
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	94.88
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.42
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	94.41
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	93.52
PF14443	126	DBC1: DBC1	87.17
PRK10880	350	adenine DNA glycosylase; Provisional	87.05

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.91  E-value=1.8e-23  Score=149.40  Aligned_cols=112  Identities=39%  Similarity=0.645  Sum_probs=89.4

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee-ceeeeEEEEe
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFK  118 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~-~~~l~~~~~~  118 (163)
                      .++|+|+++.+         ++..+|||+++...+.|.+|||++++|||+++||+||++||||+.+... .. ++.+.+.
T Consensus         1 ~~~g~v~~~~~---------~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~   70 (122)
T cd04666           1 LQAGAIPYRET---------GGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYR   70 (122)
T ss_pred             CEEEEEEEEEc---------CCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEee
Confidence            36899999875         3467899999987789999999999999999999999999999998776 66 8888776


Q ss_pred             eCCC--CceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          119 SRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       119 ~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ....  ......++|.+.+......+++.+..+++|++++++...
T Consensus        71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~  115 (122)
T cd04666          71 KRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALL  115 (122)
T ss_pred             ecCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHh
Confidence            5532  235667888888765544445555678999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.89  E-value=2.3e-22  Score=143.48  Aligned_cols=112  Identities=23%  Similarity=0.294  Sum_probs=85.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      +.+|++|+++.+         +++++|||++++..+.|.||||++++|||+++||.||++||||+.+..... ++.+.+.
T Consensus         1 ~~~a~~ii~~~~---------~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   70 (131)
T cd03673           1 VLAAGGVVFRGS---------DGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYW   70 (131)
T ss_pred             CeeEEEEEEEcc---------CCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEe
Confidence            368899999875         456799999998878999999999999999999999999999999887776 7766654


Q ss_pred             eCCC--CceEEEEEEEEEeccccCCC-CcCcceeEEEEecCCCcc
Q 031232          119 SRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 ~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W~~~~e~~~  160 (163)
                      ....  ......++|.+......... ++.+..+++|++++++..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  115 (131)
T cd03673          71 FSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARD  115 (131)
T ss_pred             ccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHH
Confidence            4321  22455666776655432221 344568999999988754

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.87  E-value=1.6e-21  Score=138.87  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=82.9

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      ||++|++++++.+            ++|||++|..   .+.|.+|||++++|||+++||+||++||||+.+..... ++.
T Consensus         1 ~~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~   67 (125)
T cd04679           1 PRVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCV   67 (125)
T ss_pred             CceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEE
Confidence            5789999998752            3799999864   37899999999999999999999999999999877666 666


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+.......+...++|.+........ ...++..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          68 VDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             EeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCc
Confidence            554433334456667787766543222 2233457899999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.87  E-value=3e-22  Score=144.26  Aligned_cols=120  Identities=48%  Similarity=0.769  Sum_probs=100.2

Q ss_pred             cccC-CCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           32 QRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        32 ~~~~-~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      |+|+ .++|+++|||+++.+         ....+||||+..+ +..|.+|+|++|++|+..+||.||..||+|+.....+
T Consensus         1 qry~~~G~r~vagCi~~r~~---------~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~   71 (145)
T KOG2839|consen    1 QRYDPAGFRLVAGCICYRSD---------KEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR   71 (145)
T ss_pred             CccCCCCcEEEEEeeeeeec---------CcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence            5788 599999999999985         2357899999887 4689999999999999999999999999999999888


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCc--ceeEEEEecCCCcc
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWVCTFMPVT  160 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~~~~e~~~  160 (163)
                      ...+...+.+....+.+..+.|.+.+.+..+.+|+.+  ..+.+|++++||+.
T Consensus        72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~  124 (145)
T KOG2839|consen   72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIE  124 (145)
T ss_pred             cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHH
Confidence            6255454555545556777889988888888888877  58999999999875

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.86  E-value=7.4e-21  Score=135.12  Aligned_cols=98  Identities=22%  Similarity=0.238  Sum_probs=74.1

Q ss_pred             eEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCC----ceEEEEEEEEEe
Q 031232           63 LEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN----TDYQGYMFPLLV  135 (163)
Q Consensus        63 ~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~----~~~~~~~f~~~~  135 (163)
                      ++|||+++++.   +.|.+|||++++|||+++||+||++||||+.+..... ++.+.+......    .....++|.+..
T Consensus        11 ~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~   89 (128)
T cd04684          11 GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASRYFYSPDGDYDAHHLCVFYDARV   89 (128)
T ss_pred             CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEEEEECCCCCeeccEEEEEEEEEE
Confidence            37999999874   7899999999999999999999999999999877666 776554332221    245667788877


Q ss_pred             ccccC--CCCcCcceeEEEEecCCCccC
Q 031232          136 QDQLA--EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       136 ~~~~~--~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .....  ..+..+..+++|++++++...
T Consensus        90 ~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          90 VGGALPVQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             ecCccccCCCCCCceeeEEECHHHhhcc
Confidence            65432  334445578999999988743

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=8.6e-21  Score=139.10  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=81.6

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee--cee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~--~~~  111 (163)
                      .|+++|++||++.+            ++|||++|+.   .|.|.||||++++|||+++||+||++||||+++...  +. 
T Consensus        10 ~p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~-   76 (144)
T cd03430          10 TPLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL-   76 (144)
T ss_pred             CCeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-
Confidence            46789999998752            4799999864   378999999999999999999999999999998765  44 


Q ss_pred             eeEEEEeeC------CCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSR------AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~------~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.....      ....++...+|.+.........+..+..+++|++++++..
T Consensus        77 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  131 (144)
T cd03430          77 LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA  131 (144)
T ss_pred             EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence            565543221      1223456667777665433233444568999999988764

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.85  E-value=4.2e-21  Score=137.28  Aligned_cols=112  Identities=22%  Similarity=0.238  Sum_probs=82.0

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE--
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~--  116 (163)
                      ..++++|+|..+         +++.+|||+++++ +.|.+|||++++|||+.+||.||++||||+.+..... ++.+.  
T Consensus         2 ~~~~g~vi~~~~---------~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   70 (130)
T cd03428           2 ERSAGAIIYRRL---------NNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKET   70 (130)
T ss_pred             ceEEEEEEEEec---------CCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeE
Confidence            367899999875         4667899999987 8999999999999999999999999999999776555 43222  


Q ss_pred             EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +...........++|.+.+..........+..+++|++++++...
T Consensus        71 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  115 (130)
T cd03428          71 LNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKL  115 (130)
T ss_pred             EEccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHH
Confidence            211112234556677777663322233345689999999987654

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.85  E-value=1.3e-20  Score=140.48  Aligned_cols=111  Identities=19%  Similarity=0.183  Sum_probs=79.6

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--ecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~  111 (163)
                      .+.++|++|+++.            .++|||+||...   +.|.||||+|++|||+++||+||++||||+.+..  ... 
T Consensus        15 ~~~~~v~~vI~~~------------~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~-   81 (159)
T PRK15434         15 TPLISLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-   81 (159)
T ss_pred             CceEEEEEEEECC------------CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-
Confidence            4567888888753            348999998752   7899999999999999999999999999998643  233 


Q ss_pred             eeEEEEeeCC------CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+....      ...++..++|.+............+..+++|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~  136 (159)
T PRK15434         82 YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLA  136 (159)
T ss_pred             EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhh
Confidence            5544332221      122466778888765433333334568999999998865

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.85  E-value=1.1e-20  Score=138.83  Aligned_cols=110  Identities=21%  Similarity=0.181  Sum_probs=85.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .|...|++++.+.+             +|||++|+..   |.|.||||++|.|||+++||.||++||||+++...++ ++
T Consensus         8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~   73 (145)
T COG1051           8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LA   73 (145)
T ss_pred             CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EE
Confidence            67889999998763             7999999876   7899999999999999999999999999999888888 88


Q ss_pred             EEEEeeCCCCceEEEEEEEEEec-cccCCCCcCcceeEEEEecCCCcc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQ-DQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++....++...++..++|..... +.....+.++...+.|++++++..
T Consensus        74 v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~  121 (145)
T COG1051          74 VFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPE  121 (145)
T ss_pred             EecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccc
Confidence            88777665444555555555443 323333333457899999998765

>PLN02325 nudix hydrolase

Probab=99.85  E-value=2.6e-20  Score=136.67  Aligned_cols=113  Identities=19%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             cCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        34 ~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      +...+++.|++++++.+             +|||++|+.   .+.|.+|||++++|||+++||+||++||||+++.....
T Consensus         4 ~~~~p~~~v~~vi~~~~-------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~   70 (144)
T PLN02325          4 GEPIPRVAVVVFLLKGN-------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIEL   70 (144)
T ss_pred             CCCCCeEEEEEEEEcCC-------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE
Confidence            44567888888888642             799999875   36899999999999999999999999999999887777


Q ss_pred             eeeEEEEeeCC--CCceEEEEEEEEEeccccC--CCCc-CcceeEEEEecCCCcc
Q 031232          111 LLGEWNFKSRA--HNTDYQGYMFPLLVQDQLA--EWPE-KNVRSRKWVCTFMPVT  160 (163)
Q Consensus       111 ~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~--~~~~-~e~~~~~W~~~~e~~~  160 (163)
                       ++.+.+....  ...++..++|.+.......  ...+ ++..+++||++++...
T Consensus        71 -l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~  124 (144)
T PLN02325         71 -LTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE  124 (144)
T ss_pred             -EEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence             7665433221  2234566677776543221  1112 2236789999998754

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=2.5e-20  Score=133.34  Aligned_cols=110  Identities=24%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      |+.+|++|+++.+            +++||++|..   .+.|.+|||++++|||+++||.||++||||+++..... ++.
T Consensus         1 p~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~   67 (129)
T cd04678           1 PRVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTV   67 (129)
T ss_pred             CceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEE
Confidence            5788999999752            4799999873   47899999999999999999999999999999877666 665


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCCC---CcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W~~~~e~~~  160 (163)
                      +..........+...+|.+.........   ..++..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  116 (129)
T cd04678          68 TNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS  116 (129)
T ss_pred             EeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence            5443333344567778877766432221   123346889999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=3.6e-20  Score=131.74  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=79.4

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~  117 (163)
                      |++.|.+++++.+             +|||++++..+.|.+|||++++|||+++||.||++||||+.+..... ++.+..
T Consensus         1 p~~~v~~~i~~~~-------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~   66 (123)
T cd04672           1 PKVDVRAAIFKDG-------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDR   66 (123)
T ss_pred             CcceEEEEEEECC-------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEecc
Confidence            5678888888642             79999998888999999999999999999999999999999865555 555433


Q ss_pred             eeCC---CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          118 KSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       118 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ....   ...+....+|.+...... ..+..+..+++|+++++...+
T Consensus        67 ~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~l  112 (123)
T cd04672          67 NKHHPPPQPYQVYKLFFLCEILGGE-FKPNIETSEVGFFALDDLPPL  112 (123)
T ss_pred             ccccCCCCceEEEEEEEEEEecCCc-ccCCCceeeeEEECHHHCccc
Confidence            2111   112344566777765432 223345688999999987553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.84  E-value=2.7e-20  Score=133.96  Aligned_cols=107  Identities=22%  Similarity=0.310  Sum_probs=78.4

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      +|++|+...+             ++||++|.+.  +.|.+|||++++|||+++||.||++||||+++..... ++.+.+.
T Consensus         2 ~v~~ii~~~~-------------~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   67 (134)
T cd03675           2 TVAAVVERDG-------------RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWT   67 (134)
T ss_pred             eEEEEEEECC-------------EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEee
Confidence            5667766542             7999998754  5799999999999999999999999999999876666 6666554


Q ss_pred             eCCCCceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCccC
Q 031232          119 SRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .......+..++|.+.+...... ..+.+..++.|++++++...
T Consensus        68 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~  111 (134)
T cd03675          68 APDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILAL  111 (134)
T ss_pred             cCCCCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhh
Confidence            43323345566777776654322 23345678999999887643

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=1.5e-20  Score=135.30  Aligned_cols=109  Identities=20%  Similarity=0.187  Sum_probs=77.2

Q ss_pred             EEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE--EEE
Q 031232           42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE--WNF  117 (163)
Q Consensus        42 v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~--~~~  117 (163)
                      +|+|++...         +++.+|||++|..  .|.|.+|||++++|||+.+||+||++||||+++..... .+.  ..+
T Consensus         2 ~~~v~~~~~---------~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~   71 (131)
T cd04695           2 VSGVLLRSL---------DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFY   71 (131)
T ss_pred             ceEEEEEEc---------CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEe
Confidence            678888775         3567899999987  68999999999999999999999999999998764322 111  112


Q ss_pred             eeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       118 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .. .....+...+|.+.........+.++..+++|++++++.+.
T Consensus        72 ~~-~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  114 (131)
T cd04695          72 EA-NDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALEL  114 (131)
T ss_pred             ec-CCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHh
Confidence            21 22234455667766543322333445689999999988653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.7e-20  Score=131.10  Aligned_cols=96  Identities=24%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             eEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee-eeceeeeEEEEeeCCCCceEEEEEEEEEeccccCC
Q 031232           63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (163)
Q Consensus        63 ~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (163)
                      +++||++++..+.|.+|||++++|||+++||+||++||||+.+. .... ++.+.+....  .....++|.+........
T Consensus        12 ~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~~~--~~~~~~~f~~~~~~~~~~   88 (120)
T cd04680          12 GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSASG--SWDHVIVFRARADTQPVI   88 (120)
T ss_pred             CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCCCC--CceEEEEEEecccCCCcc
Confidence            47999999877799999999999999999999999999999988 6666 7766654332  234556777766543323


Q ss_pred             CCcCcceeEEEEecCCCccC
Q 031232          142 WPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       142 ~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .++.+..+++|++++++...
T Consensus        89 ~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          89 RPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             CCcccEEEEEEECHHHCccc
Confidence            34455689999999988653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=5.6e-20  Score=130.93  Aligned_cols=105  Identities=20%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~  119 (163)
                      ++|++|+++.+             +|||++++..+.|.+|||++++|||+.+||.||++||||+++..... ++.+.+..
T Consensus         2 ~~~~~vi~~~~-------------~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~   67 (125)
T cd04689           2 LRARAIVRAGN-------------KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQW   67 (125)
T ss_pred             eEEEEEEEeCC-------------EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeeee
Confidence            57888888642             79999998778999999999999999999999999999999887666 77655433


Q ss_pred             CCCC--ceEEEEEEEEEecccc---CCCCcCcceeEEEEecCCC
Q 031232          120 RAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSRKWVCTFMP  158 (163)
Q Consensus       120 ~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~e~  158 (163)
                      ...+  .....++|.+......   ....+.+..+++|+++++.
T Consensus        68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el  111 (125)
T cd04689          68 HEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDL  111 (125)
T ss_pred             ccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHc
Confidence            3222  2344567776654321   1222334578999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=7.8e-20  Score=130.35  Aligned_cols=107  Identities=20%  Similarity=0.122  Sum_probs=79.4

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~  119 (163)
                      .+|.+|+++.+             +|||+++...+.|.+|||++++|||+.+||.||++||||+.+..... ++.+....
T Consensus         2 ~~v~~vi~~~~-------------~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~   67 (126)
T cd04688           2 VRAAAIIIHNG-------------KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIF   67 (126)
T ss_pred             eEEEEEEEECC-------------EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEee
Confidence            46777777642             79999887768899999999999999999999999999999887776 66654322


Q ss_pred             C--CCCceEEEEEEEEEeccccCCC-------CcCcceeEEEEecCCCcc
Q 031232          120 R--AHNTDYQGYMFPLLVQDQLAEW-------PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       120 ~--~~~~~~~~~~f~~~~~~~~~~~-------~~~e~~~~~W~~~~e~~~  160 (163)
                      .  ........++|.+.........       ++.+..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  117 (126)
T cd04688          68 TYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE  117 (126)
T ss_pred             ccCCcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence            2  2223456778888776543221       334468999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.4e-19  Score=129.53  Aligned_cols=111  Identities=19%  Similarity=0.082  Sum_probs=75.7

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE-
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN-  116 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~-  116 (163)
                      +...|++++++.            +++|||++|...+.|.||||++++|||+++||.||++||||+.+..... ++.+. 
T Consensus         6 ~~~~~~~~v~~~------------~~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~   72 (132)
T cd04677           6 ILVGAGVILLNE------------QGEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSG   72 (132)
T ss_pred             cccceEEEEEeC------------CCCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecC
Confidence            345566666643            2479999988778899999999999999999999999999999887666 55432 


Q ss_pred             ---EeeCCCC-c-eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          117 ---FKSRAHN-T-DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ---~~~~~~~-~-~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                         +...... . ....++|.+.........+..+..+++|++++++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  122 (132)
T cd04677          73 KEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPEL  122 (132)
T ss_pred             CceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccc
Confidence               2111111 1 2333444444433222334455688999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.5e-19  Score=129.37  Aligned_cols=109  Identities=19%  Similarity=0.235  Sum_probs=77.8

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      |.+|++|+++.+             +|||+++.+.  +.|.+|||++++|||+++||.||++||||+.+..... ++.+.
T Consensus         1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~   66 (128)
T cd04687           1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVRE   66 (128)
T ss_pred             CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEE
Confidence            467888888643             7999998654  5699999999999999999999999999999876655 44444


Q ss_pred             EeeC------CCCceEEEEEEEEEeccccC----CCCcCcceeEEEEecCCCccC
Q 031232          117 FKSR------AHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ~~~~------~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +...      ....+...++|.+.......    ..++.+..+++|++++++...
T Consensus        67 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          67 YIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             EeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            4321      11234566778777654321    122333468999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.3e-19  Score=127.73  Aligned_cols=96  Identities=23%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             EEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCC----CceEEEEEEEEEec
Q 031232           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH----NTDYQGYMFPLLVQ  136 (163)
Q Consensus        64 ~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~----~~~~~~~~f~~~~~  136 (163)
                      ++||++++.   .+.|.+|||++++|||+++||.||++||||+++..... ++.+.+.....    ......++|.+...
T Consensus        12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (122)
T cd04673          12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDVIERDAAGRVEFHYVLIDFLCRYL   90 (122)
T ss_pred             EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEEeeccCCCccceEEEEEEEEEEeC
Confidence            699999875   36799999999999999999999999999999877666 66655443221    12344555666554


Q ss_pred             cccCCCCcCcceeEEEEecCCCccC
Q 031232          137 DQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ... ..+..+..+++|++++++...
T Consensus        91 ~~~-~~~~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          91 GGE-PVAGDDALDARWVPLDELAAL  114 (122)
T ss_pred             CCc-ccCCcccceeEEECHHHHhhC
Confidence            332 233445678999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.83  E-value=1.3e-19  Score=132.40  Aligned_cols=110  Identities=18%  Similarity=0.136  Sum_probs=80.3

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      ..+|++|+++.+            ++|||++++..   +.|.||||++++|||+++||+||++||||+++..... ++.+
T Consensus        13 ~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~   79 (142)
T cd04700          13 ARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LGTY   79 (142)
T ss_pred             eeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EEEE
Confidence            578888888642            36999987643   6799999999999999999999999999999887766 7766


Q ss_pred             EEeeCCCCceEEEEEEEEEecccc-CCCCcCcceeEEEEecCCCccCC
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWVCTFMPVTCF  162 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~  162 (163)
                      .+.... ......++|.+...... .+....+..+++||+++++...+
T Consensus        80 ~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~  126 (142)
T cd04700          80 LGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLY  126 (142)
T ss_pred             EEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcc
Confidence            543332 22344567777664321 22233456899999999887643

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8.9e-20  Score=129.97  Aligned_cols=109  Identities=18%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      |.++|++++++.+            ++|||+++.. .+.|.+|||++++|||+++||.||++||||+++..... ++...
T Consensus         1 p~~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~   67 (125)
T cd04696           1 PLVTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQE   67 (125)
T ss_pred             CccEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEE
Confidence            4577888888642            3699998754 47899999999999999999999999999999876554 44332


Q ss_pred             Eee--CC-CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          117 FKS--RA-HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 ~~~--~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +..  .. ...++..+.|.+..... ...+..+..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04696          68 AIFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEWVTPEEALD  113 (125)
T ss_pred             EeccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEEECHHHHhc
Confidence            221  11 12234455566655432 223344568999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=1.1e-19  Score=132.09  Aligned_cols=110  Identities=19%  Similarity=0.134  Sum_probs=74.9

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee-----
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-----  113 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~-----  113 (163)
                      +.+|++++++.           +.++|||++|+..+.|.+|||++++|||+++||.||++||||+++..... .+     
T Consensus         2 ~~~~~~~v~~~-----------~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   69 (138)
T cd03674           2 HFTASAFVVNP-----------DRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDL   69 (138)
T ss_pred             cEEEEEEEEeC-----------CCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccc
Confidence            46788888864           23589999998888999999999999999999999999999998654333 22     


Q ss_pred             -EEEEeeCCC----CceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCcc
Q 031232          114 -EWNFKSRAH----NTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 -~~~~~~~~~----~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~~  160 (163)
                       .+.......    ...+...+|.+.+...... .+..+..+++|++++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  122 (138)
T cd03674          70 DVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELAS  122 (138)
T ss_pred             eeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence             111111111    1233445677765432222 1344567899999998743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.3e-19  Score=127.42  Aligned_cols=94  Identities=20%  Similarity=0.265  Sum_probs=71.7

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--eceeeeEEEEeeCCC-CceEEEEEEEEEeccccC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~  140 (163)
                      ++||++++..+.|.+|||++++|||+++||.||++||||+.+..  ... ++.+....... ......++|.+....  .
T Consensus        13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~   89 (118)
T cd04690          13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--E   89 (118)
T ss_pred             eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--C
Confidence            79999998888999999999999999999999999999999776  555 66665432221 234566777776654  2


Q ss_pred             CCCcCcceeEEEEecCCCcc
Q 031232          141 EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       141 ~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..+..+..+++|++++++..
T Consensus        90 ~~~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          90 PVPAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             cCCCchhhccEEecHHHccc
Confidence            33444567899999999643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.82  E-value=2.2e-19  Score=129.48  Aligned_cols=96  Identities=23%  Similarity=0.154  Sum_probs=72.6

Q ss_pred             eEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        63 ~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      ++|||++|..   .+.|.+|||++++|||+.+||+||++||||+.+..... ++.+.+...........++|.+......
T Consensus        12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~   90 (137)
T cd03427          12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGE   90 (137)
T ss_pred             CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCcccc
Confidence            3799999886   47899999999999999999999999999999887776 7777665443234556677776554332


Q ss_pred             CCCCcCcceeEEEEecCCCcc
Q 031232          140 AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .. ...+..+++|++++++..
T Consensus        91 ~~-~~~e~~~~~W~~~~el~~  110 (137)
T cd03427          91 PL-KESEEGILDWFDIDDLPL  110 (137)
T ss_pred             cC-CCCccccceEEcHhhccc
Confidence            22 233446899999998764

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.82  E-value=6.5e-20  Score=134.72  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~  119 (163)
                      .++++|+++.+           .++|||+++...+.|.||||++++|||+.+||+||++||||+.+..... ...+.  .
T Consensus         2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~--~   67 (145)
T cd03672           2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYI--E   67 (145)
T ss_pred             CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceee--e
Confidence            36788888752           2479999998778999999999999999999999999999998765322 12222  1


Q ss_pred             CCCCceEEEEEEEEE-eccccC--CCCcCcceeEEEEecCCCccC
Q 031232          120 RAHNTDYQGYMFPLL-VQDQLA--EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       120 ~~~~~~~~~~~f~~~-~~~~~~--~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ....... .++|.+. ......  ..+..+..+++|++++++...
T Consensus        68 ~~~~~~~-~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  111 (145)
T cd03672          68 LIIRGQN-VKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTK  111 (145)
T ss_pred             cccCCcE-EEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhh
Confidence            1111112 2334332 222111  223345689999999887653

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=2.8e-19  Score=126.20  Aligned_cols=97  Identities=20%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--eceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      +|||++|...    +.|.+|||++++|||+++||.||++||||+.+..  ... ++.+.+.... ......++|.+....
T Consensus        12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~   89 (120)
T cd04683          12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWS   89 (120)
T ss_pred             EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeec
Confidence            7999998653    6899999999999999999999999999998763  333 5555443322 223455667665433


Q ss_pred             ccC-CCCcCcceeEEEEecCCCccCC
Q 031232          138 QLA-EWPEKNVRSRKWVCTFMPVTCF  162 (163)
Q Consensus       138 ~~~-~~~~~e~~~~~W~~~~e~~~~~  162 (163)
                      ... ....++..+++|++++++...+
T Consensus        90 ~~~~~~~~~e~~~~~W~~~~~l~~~~  115 (120)
T cd04683          90 GEPRNCEPDKCAELRWFPLDALPDDT  115 (120)
T ss_pred             CccccCCCCcEeeEEEEchHHCcchh
Confidence            222 2223345789999999886543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.5e-19  Score=127.86  Aligned_cols=107  Identities=21%  Similarity=0.262  Sum_probs=72.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      .+.|++++++.            .++|||++++.  .+.|.+|||++++|||+++||.||++||||+.+..... ++...
T Consensus         2 ~~~~~~~v~~~------------~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~   68 (127)
T cd04670           2 TVGVGGLVLNE------------KNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRH   68 (127)
T ss_pred             eeEEEEEEEcC------------CCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEe
Confidence            45677788764            24799999877  58899999999999999999999999999999876555 54333


Q ss_pred             EeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          117 FKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +......  ....+|.+.+....  ....+++..+++|++++++.+
T Consensus        69 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          69 AHPGAFG--KSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             cCCCCcC--ceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence            2221111  12233444443211  112233457899999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.2e-19  Score=129.83  Aligned_cols=110  Identities=21%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE--
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--  116 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~--  116 (163)
                      +|.+++++..          ++++|||++|..  .+.|.+|||++++|||+.+||.||++||||+.+..... ++.+.  
T Consensus         3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~   71 (129)
T cd04664           3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASI   71 (129)
T ss_pred             EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-Eeecccc
Confidence            4666777652          456899999987  58899999999999999999999999999999754443 33332  


Q ss_pred             --EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          117 --FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 --~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                        +...........++|.+.+........+.+..+++|++++++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  118 (129)
T cd04664          72 AFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL  118 (129)
T ss_pred             cccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHH
Confidence              111112234566788887665432223334578999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.9e-19  Score=129.74  Aligned_cols=106  Identities=23%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCee-eeeceeeeEEEEee
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKS  119 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~~l~~~~~~~  119 (163)
                      +|++|+++.+             +|||+++++.+.|.||||++++|||+.+||+||++||||+.+ ..... ++.+....
T Consensus         2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~   67 (131)
T cd04686           2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERR   67 (131)
T ss_pred             cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeec
Confidence            5778888753             799999987788999999999999999999999999999986 34444 66554211


Q ss_pred             --CCC---CceEEEEEEEEEeccccC-CCCc-Ccc---eeEEEEecCCCcc
Q 031232          120 --RAH---NTDYQGYMFPLLVQDQLA-EWPE-KNV---RSRKWVCTFMPVT  160 (163)
Q Consensus       120 --~~~---~~~~~~~~f~~~~~~~~~-~~~~-~e~---~~~~W~~~~e~~~  160 (163)
                        ...   ..+...++|.+.+..... ...+ .+.   ..++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~  118 (131)
T cd04686          68 PWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIE  118 (131)
T ss_pred             cccCCCCceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence              111   113456778887654321 1111 111   3589999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=6.7e-19  Score=124.73  Aligned_cols=109  Identities=19%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE-
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-  117 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~-  117 (163)
                      +..|++|+++.            ++++||++|...+.|.||||++++|||+++||.||++||||+++..... ++.+.. 
T Consensus         2 ~~~v~~ii~~~------------~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~   68 (129)
T cd04676           2 LPGVTAVVRDD------------EGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGP   68 (129)
T ss_pred             cceEEEEEECC------------CCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecc
Confidence            56777777754            2479999998888999999999999999999999999999999876554 443221 


Q ss_pred             ----eeCCCC-ceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          118 ----KSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       118 ----~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                          ...... .....++|.+.........+..+..+++|++++++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~  116 (129)
T cd04676          69 VHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP  116 (129)
T ss_pred             cceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence                111111 1344455655544332222344557899999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.81  E-value=8.7e-20  Score=133.78  Aligned_cols=111  Identities=19%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee-ee--
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LG--  113 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~-l~--  113 (163)
                      ++.+|++++++.+            ++|||++|+.. +.|.+|||++|+|||+++||+||++||||+++...... ++  
T Consensus         6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   73 (148)
T PRK09438          6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ   73 (148)
T ss_pred             CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence            4678888888642            36999988654 78999999999999999999999999999987322110 11  


Q ss_pred             ---EEEEe------eCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          114 ---EWNFK------SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       114 ---~~~~~------~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                         .+.+.      ..........++|.+.........+ ++..+++|++++++...
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~E~~~~~W~~~~e~~~~  129 (148)
T PRK09438         74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPVVL-TEHLAYQWLDAREAAAL  129 (148)
T ss_pred             cccccccchhhhhccccccCCceeEEEEEecCCCCcccc-CcccceeeCCHHHHHHH
Confidence               11111      0111123455777776554322222 35689999999988654

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.5e-19  Score=125.94  Aligned_cols=92  Identities=22%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             EEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        64 ~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      +|||++|..     .+.|.||||++++|||+++||+||++||||+++..... ++.+.+...   .....++|.+.....
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~~   87 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPTS---ELQLLHYYVVTFWQG   87 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccCC---CeEEEEEEEEEEecC
Confidence            799999864     26899999999999999999999999999999654444 554433221   234456666654432


Q ss_pred             cCCCCcCcceeEEEEecCCCccC
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  ...+..+++|++++++..+
T Consensus        88 ~~--~~~E~~~~~W~~~~~l~~~  108 (117)
T cd04691          88 EI--PAQEAAEVHWMTANDIVLA  108 (117)
T ss_pred             CC--CcccccccEEcCHHHcchh
Confidence            22  2245679999999988654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=5.2e-19  Score=126.42  Aligned_cols=101  Identities=21%  Similarity=0.215  Sum_probs=73.1

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEE
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF  117 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~  117 (163)
                      +|++|+++.            +++|||+++.+.   +.|.+|||++++|||+++||+||++||||+++..... ++....
T Consensus         2 ~~~~vv~~~------------~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~   68 (123)
T cd04671           2 IVAAVILNN------------QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ   68 (123)
T ss_pred             EEEEEEEcC------------CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc
Confidence            567777753            247999998643   6899999999999999999999999999999887666 554321


Q ss_pred             eeCCCCceEEEEEEEEEecccc-CC--CCcCcceeEEEEecCCCc
Q 031232          118 KSRAHNTDYQGYMFPLLVQDQL-AE--WPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       118 ~~~~~~~~~~~~~f~~~~~~~~-~~--~~~~e~~~~~W~~~~e~~  159 (163)
                           ......++|.+...+.. ..  .++.+..+++|++++++.
T Consensus        69 -----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~  108 (123)
T cd04671          69 -----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLP  108 (123)
T ss_pred             -----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCC
Confidence                 12345667777665432 11  123345689999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.3e-19  Score=126.44  Aligned_cols=96  Identities=24%  Similarity=0.184  Sum_probs=68.0

Q ss_pred             eEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee--CCCCceEEEEEEEEEecc
Q 031232           63 LEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS--RAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        63 ~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~--~~~~~~~~~~~f~~~~~~  137 (163)
                      ++|||++|...   +.|.+|||++++|||+.+||.||++||||+++..... ++.+....  .........++|.+.+..
T Consensus        13 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (130)
T cd04681          13 GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPNTYPYGGMEYDTLDLFFVCQVDD   91 (130)
T ss_pred             CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecceeeeCCceeEEEEEEEEEEeCC
Confidence            47999988643   6899999999999999999999999999999876665 55543222  111223334567776654


Q ss_pred             ccCCCCcCcceeEEEEecCCCc
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .......++..+++|++++++.
T Consensus        92 ~~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          92 KPIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             CCCcCChHHhheeEEecHHHCC
Confidence            3322333456889999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=9.5e-19  Score=124.40  Aligned_cols=101  Identities=27%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      .|++|+++.            +++|||++|...  +.|.||||++++|||+++||+||++||||+++..... ++.+.+ 
T Consensus         2 ~~~~ii~~~------------~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~-   67 (121)
T cd04669           2 RASIVIIND------------QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ-   67 (121)
T ss_pred             ceEEEEEeC------------CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee-
Confidence            466777764            237999998654  5799999999999999999999999999999977666 665544 


Q ss_pred             eCCCCceEEEEEEEEEeccccCC--C-------CcCcceeEEEEecCCCcc
Q 031232          119 SRAHNTDYQGYMFPLLVQDQLAE--W-------PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~--~-------~~~e~~~~~W~~~~e~~~  160 (163)
                       .  .  ...++|.+........  .       .+.+..+++|++++++..
T Consensus        68 -~--~--~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~  113 (121)
T cd04669          68 -N--G--RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLET  113 (121)
T ss_pred             -C--C--cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHccc
Confidence             1  1  2345676655432111  0       122245789999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.80  E-value=3.7e-19  Score=126.66  Aligned_cols=110  Identities=25%  Similarity=0.262  Sum_probs=81.2

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      ++.+|++|+++.+            ++|||+++.+.     +.|.+|||++++|||+.+||+||++||||+.+..... +
T Consensus         1 ~~~~v~~ii~~~~------------~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~   67 (134)
T PF00293_consen    1 WRRAVGVIIFNED------------GKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-L   67 (134)
T ss_dssp             EEEEEEEEEEETT------------TEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-E
T ss_pred             CCCEEEEEEEeCC------------cEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccc-c
Confidence            3688999999863            28999999876     5799999999999999999999999999999866555 5


Q ss_pred             eEEEEeeCCCCc-eEEEEEEEEEecccc-CC-CCcCcceeEEEEecCCCcc
Q 031232          113 GEWNFKSRAHNT-DYQGYMFPLLVQDQL-AE-WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       113 ~~~~~~~~~~~~-~~~~~~f~~~~~~~~-~~-~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+.+....... ....++|.+...... .. ....+..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  118 (134)
T PF00293_consen   68 GLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLE  118 (134)
T ss_dssp             EEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHH
T ss_pred             eeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhh
Confidence            555555443332 345566666555433 22 2222568999999998754

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3.4e-19  Score=126.53  Aligned_cols=96  Identities=17%  Similarity=0.022  Sum_probs=67.1

Q ss_pred             eEEEEEEEcCC------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232           63 LEVLVISSQKG------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (163)
Q Consensus        63 ~~vLLv~r~~~------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (163)
                      ++|||++|...      |.|.||||+++.|||+++||.||++||||+++..... .....+....  .....++|.+...
T Consensus        12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~f~~~~~   88 (122)
T cd04682          12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSAS--PPGTEHVFVVPLT   88 (122)
T ss_pred             CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccCC--CCceEEEEEEEEe
Confidence            47999998643      7899999999999999999999999999999764333 2222222221  2234566766655


Q ss_pred             ccc-CCCCcCcceeEEEEecCCCccC
Q 031232          137 DQL-AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       137 ~~~-~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ... .....++..+++|+++++...+
T Consensus        89 ~~~~~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          89 AREDAILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             cCCCccccCchhheeecccHHHHhhc
Confidence            432 2334445678999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.7e-18  Score=124.46  Aligned_cols=104  Identities=20%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .++.+|++|+++.+             +|||++|..   .+.|.+|||++++|||+++||.||++||||+++..... ++
T Consensus        11 ~~~~~v~~ii~~~~-------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~~   76 (130)
T cd04511          11 NPKIIVGCVPEWEG-------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-YA   76 (130)
T ss_pred             CCcEEEEEEEecCC-------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-EE
Confidence            56788888887642             799999853   46899999999999999999999999999999876555 66


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .+...    ......++|.+...... ..+..+..+++|+++++..
T Consensus        77 ~~~~~----~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          77 VYSVP----HISQVYMFYRARLLDLD-FAPGPESLEVRLFTEEEIP  117 (130)
T ss_pred             EEecC----CceEEEEEEEEEEcCCc-ccCCcchhceEEECHHHCC
Confidence            55432    12345677887775432 2334455789999998874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=7.9e-19  Score=122.91  Aligned_cols=89  Identities=21%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (163)
                      ++||+++.. +.|.+|||++++|||+.+||.||++||||+.+..... ++.+.  .  .  ....++|.+.........+
T Consensus        12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~--~--~--~~~~~~f~~~~~~~~~~~~   83 (112)
T cd04667          12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD--G--G--STRHHVFVASVPPSAQPKP   83 (112)
T ss_pred             EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe--C--C--CEEEEEEEEEcCCcCCCCC
Confidence            799998865 8899999999999999999999999999999765555 44432  1  1  1234567776554333344


Q ss_pred             cCcceeEEEEecCCCcc
Q 031232          144 EKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       144 ~~e~~~~~W~~~~e~~~  160 (163)
                      ..+..+++|++++++..
T Consensus        84 ~~e~~~~~W~~~~el~~  100 (112)
T cd04667          84 SNEIADCRWLSLDALGD  100 (112)
T ss_pred             chheeEEEEecHHHhhh
Confidence            55568899999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.79  E-value=7.5e-19  Score=130.46  Aligned_cols=110  Identities=20%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .++.+|++...         ++..+|||++|..     .|.|.+|||++++| ||+++||+||++||||+++..... ++
T Consensus         2 ~~av~v~l~~~---------~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~   71 (157)
T cd03426           2 RAAVLVLLVER---------EGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LG   71 (157)
T ss_pred             ceEEEEEEEeC---------CCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EE
Confidence            34556666654         3457899999875     37899999999999 999999999999999999876665 65


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~  161 (163)
                      .+........  ...++|.+.........+ ..+..+++|++++++...
T Consensus        72 ~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          72 RLPPYYTRSG--FVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             ECCCccccCC--CEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence            5432222222  233445555443212222 234578999999987654

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=2.3e-18  Score=126.27  Aligned_cols=111  Identities=20%  Similarity=0.202  Sum_probs=75.6

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE-
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW-  115 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~-  115 (163)
                      ++.+|++|+++.+            ++|||++|... +.|.+|||++++||++.+||.||++||||+++..... ++.. 
T Consensus         2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~   68 (147)
T cd03671           2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIP   68 (147)
T ss_pred             CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcC
Confidence            3678888888642            47999999876 5999999999999999999999999999999765554 4432 


Q ss_pred             ---EEeeCCC---------CceEEEEEEEEEecc---ccCCCC--cCcceeEEEEecCCCccC
Q 031232          116 ---NFKSRAH---------NTDYQGYMFPLLVQD---QLAEWP--EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 ---~~~~~~~---------~~~~~~~~f~~~~~~---~~~~~~--~~e~~~~~W~~~~e~~~~  161 (163)
                         .|.....         ......++|.+.+..   .....+  +.+..+++|++++++...
T Consensus        69 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~  131 (147)
T cd03671          69 DWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL  131 (147)
T ss_pred             CeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence               2221110         011233455555443   111222  345689999999987653

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.78  E-value=2.9e-18  Score=124.73  Aligned_cols=96  Identities=19%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             EEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE-------EEeeCCCCceEEE-EE
Q 031232           64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW-------NFKSRAHNTDYQG-YM  130 (163)
Q Consensus        64 ~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~-------~~~~~~~~~~~~~-~~  130 (163)
                      +|||+||...     |.|.+|||++++|||+++||.||++||||+++.........+       .+........+.. .+
T Consensus        16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T PRK15472         16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLI   95 (141)
T ss_pred             EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEE
Confidence            7999997643     789999999999999999999999999999875433200011       1111111112222 23


Q ss_pred             EEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          131 FPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       131 f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      |.+..... ...+.++..+++|++++++..
T Consensus        96 ~~~~~~~~-~~~~~~E~~~~~w~~~~el~~  124 (141)
T PRK15472         96 FDCVSANR-DVKINEEFQDYAWVKPEDLVH  124 (141)
T ss_pred             EEeecCCC-cccCChhhheEEEccHHHhcc
Confidence            44433322 222334568999999998765

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.76  E-value=2.2e-18  Score=124.27  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=68.1

Q ss_pred             ceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           62 DLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        62 ~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      +++|||++|+.  .+.|.+|||++++|||+++||.||++||||+.+..... ++.+.+...    ....++|.+......
T Consensus        11 ~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~   85 (131)
T cd03429          11 GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGE   85 (131)
T ss_pred             CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCc
Confidence            35899999876  47899999999999999999999999999999876666 655333221    233456666655432


Q ss_pred             CCCCcCcceeEEEEecCCCcc
Q 031232          140 AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .....++..+++|++++++..
T Consensus        86 ~~~~~~E~~~~~w~~~~el~~  106 (131)
T cd03429          86 IVVDDDELEDARWFSRDEVRA  106 (131)
T ss_pred             ccCCchhhhccEeecHHHHhh
Confidence            222233457899999988654

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.76  E-value=3.6e-18  Score=123.37  Aligned_cols=99  Identities=18%  Similarity=0.204  Sum_probs=69.1

Q ss_pred             ceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec---eeeeEEEEeeCCC-----CceEEEEEE
Q 031232           62 DLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAH-----NTDYQGYMF  131 (163)
Q Consensus        62 ~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~---~~l~~~~~~~~~~-----~~~~~~~~f  131 (163)
                      ..++||+++..+  +.|.||||++++|||+.+||.||++||||+.+....   .+++.+.+.....     ......++|
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   91 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFF   91 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEE
Confidence            348999998653  689999999999999999999999999999765421   1133333322211     112466788


Q ss_pred             EEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          132 PLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       132 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .+....... .+..+..+++|++++++...
T Consensus        92 ~~~~~~g~~-~~~~e~~~~~W~~~~el~~~  120 (132)
T cd04661          92 KARYMSGQF-ELSQNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEecCcc-ccCCCcceeEecCHHHHHhh
Confidence            887654322 23345689999999988654

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.76  E-value=2.8e-18  Score=123.81  Aligned_cols=106  Identities=21%  Similarity=0.102  Sum_probs=74.0

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      ..|++++++.            .+++||+++++.    +.|.+|||++++|||+++||+||++||||+.+..... ++.+
T Consensus         3 ~~v~v~~~~~------------~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~   69 (137)
T cd03424           3 DAVAVLPYDD------------DGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSF   69 (137)
T ss_pred             CEEEEEEEcC------------CCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeE
Confidence            4566777764            247999987543    4799999999999999999999999999999865555 5554


Q ss_pred             EEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .+...  ......++|.+......  ....+.+..+++|++++++..
T Consensus        70 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  114 (137)
T cd03424          70 YPSPG--FSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALE  114 (137)
T ss_pred             ecCCc--ccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHH
Confidence            43321  12234456666655432  123344568899999988754

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=2.3e-17  Score=118.29  Aligned_cols=57  Identities=30%  Similarity=0.409  Sum_probs=49.9

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEE-------cCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r-------~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~  106 (163)
                      ++|+|+++.+         ++..+|||+++       +..+.|.+|||+++.||++++||+||++||||+.+.
T Consensus         2 ~~g~v~~~~~---------~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFR---------DGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEc---------CCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            6899999876         46778999985       334789999999999999999999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.75  E-value=6.5e-18  Score=126.32  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      +.+|++++++.+            ++|||++|...     |.|.+| ||++++|||+++||+||++||||+.+......+
T Consensus        30 ~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~   97 (165)
T cd02885          30 HRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVL   97 (165)
T ss_pred             eeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhcc
Confidence            677777777642            36999987642     679885 899999999999999999999999987655512


Q ss_pred             eEEEEeeCCCC---ceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          113 GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       113 ~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +.+.|......   .....++|.+........ ..++..+++|++++++...
T Consensus        98 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~-~~~Ev~~~~w~~~~el~~~  148 (165)
T cd02885          98 PRFRYRAPDDGGLVEHEIDHVFFARADVTLIP-NPDEVSEYRWVSLEDLKEL  148 (165)
T ss_pred             ceEEEEEEcCCCceeeEEEEEEEEEeCCCCCC-CccceeEEEEECHHHHHHH
Confidence            44544332211   123456776665443222 3334578999999987643

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.8e-17  Score=116.87  Aligned_cols=91  Identities=20%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (163)
                      ++||++++ .+.|.+|||++++||++++||.||++||||+.+..... ++.+.+....  ......+|.+.+.......+
T Consensus        12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~~--~~~~~~~y~a~~~~~~~~~~   87 (118)
T cd04665          12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLFE--SGFETLVYPAVSAQLEEKAS   87 (118)
T ss_pred             EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCCC--CcEEEEEEEEEEEecccccc
Confidence            79999887 46799999999999999999999999999999877777 7777655432  33455667776665444445


Q ss_pred             cCcceeEEEEecCCC
Q 031232          144 EKNVRSRKWVCTFMP  158 (163)
Q Consensus       144 ~~e~~~~~W~~~~e~  158 (163)
                      ..+.....|++....
T Consensus        88 ~~E~~~~~~~~~~~~  102 (118)
T cd04665          88 YLETDGPVLFKNEPE  102 (118)
T ss_pred             cccccCcEEeccCCc
Confidence            666789999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.8e-17  Score=117.71  Aligned_cols=95  Identities=19%  Similarity=0.094  Sum_probs=63.7

Q ss_pred             eEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++|||++|..     .+.|.+|||++++|||+.+||.||++||||+.+..... ++...+...........++|.+....
T Consensus        13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (129)
T cd04699          13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPSTVTHEDSGVYNVIYLVFVCEALS   91 (129)
T ss_pred             CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeEEEEEcCCCEEEEEEEEEEeeecC
Confidence            4799998864     36799999999999999999999999999999876555 33222222111123334455553332


Q ss_pred             ccCCCCcCcceeEEEEecCCCc
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      . ......+..+++|++++++.
T Consensus        92 ~-~~~~~~e~~~~~w~~~~el~  112 (129)
T cd04699          92 G-AVKLSDEHEEYAWVTLEELA  112 (129)
T ss_pred             C-cccCChhheEEEEecHHHhh
Confidence            2 12223345789999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=8.3e-18  Score=120.08  Aligned_cols=95  Identities=20%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             eEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeece-eeeEEEEeeCCCCceEEEEEEEEEe
Q 031232           63 LEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLV  135 (163)
Q Consensus        63 ~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~  135 (163)
                      ++|||++|...     |.|.+| ||++++|||+ +||+||++||||+.+..... .++.+.+...   .....++|.+..
T Consensus        12 g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   87 (127)
T cd04693          12 GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADV   87 (127)
T ss_pred             CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecC
Confidence            47999887642     689997 9999999999 99999999999999764332 2444443322   222333444433


Q ss_pred             ccccCCCCcCcceeEEEEecCCCccC
Q 031232          136 QDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       136 ~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .........++..+++|++++++...
T Consensus        88 ~~~~~~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04693          88 EIGKLILQKEEVDEVKFVSKDEIDGL  113 (127)
T ss_pred             cccccccCHHHhhhEEEeCHHHHHHH
Confidence            22222222334578999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.6e-17  Score=121.39  Aligned_cols=114  Identities=13%  Similarity=0.004  Sum_probs=74.2

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeece-e
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECE-L  111 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~  111 (163)
                      ..+|.+++++..         ++++++||.+|...     |.|.+ |||++++|||+++||+||++||||+.+..... .
T Consensus         2 h~~v~~~v~~~~---------~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~   72 (144)
T cd04692           2 HRTFHCWIITKD---------EGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP   72 (144)
T ss_pred             ceEEEEEEEEcc---------CCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE
Confidence            356667777653         34568888888653     68999 69999999999999999999999998643221 2


Q ss_pred             eeEEEEeeC-CC--CceEEEEEEEEEeccc--cCCCCcCcceeEEEEecCCCccC
Q 031232          112 LGEWNFKSR-AH--NTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       112 l~~~~~~~~-~~--~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ++.+.+... ..  ......++|.+.....  .....+.+..+++|++++++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  127 (144)
T cd04692          73 LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL  127 (144)
T ss_pred             eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHH
Confidence            555554332 11  1123345666654431  11122344589999999887543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.4e-17  Score=119.07  Aligned_cols=94  Identities=20%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             eEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232           63 LEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (163)
Q Consensus        63 ~~vLLv~r~~-----~~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (163)
                      ++|||++|..     .|.|.+ |||++++||++++||+||++||||+.+..... ++.+.+....  .....++|.+...
T Consensus        12 ~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~~~~~~~~--~~~~~~~f~~~~~   88 (126)
T cd04697          12 GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGLFYYDTDG--NRVWGKVFSCVYD   88 (126)
T ss_pred             CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeEEEecCCC--ceEEEEEEEEEEC
Confidence            4799988753     267999 69999999999999999999999999875555 6666654332  2334456666554


Q ss_pred             cccCCCCcCcceeEEEEecCCCcc
Q 031232          137 DQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .... ...++..+++|++++++..
T Consensus        89 ~~~~-~~~~E~~~~~w~~~~el~~  111 (126)
T cd04697          89 GPLK-LQEEEVEEITWLSINEILQ  111 (126)
T ss_pred             CCCC-CCHhHhhheEEcCHHHHHH
Confidence            3222 2233457899999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.73  E-value=2.3e-17  Score=122.48  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      .++.+|++++++.+            ++|||+++... +.|.+|||++++|||+++||.||++||||+.+..... ++.+
T Consensus         6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~   72 (156)
T PRK00714          6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAET   72 (156)
T ss_pred             CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEc
Confidence            46788888888753            37999998764 7899999999999999999999999999999765554 4432


Q ss_pred             ----EEeeCC------CCc--eEEEEEEEEEeccc-c--CC--CCcCcceeEEEEecCCCccC
Q 031232          116 ----NFKSRA------HNT--DYQGYMFPLLVQDQ-L--AE--WPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 ----~~~~~~------~~~--~~~~~~f~~~~~~~-~--~~--~~~~e~~~~~W~~~~e~~~~  161 (163)
                          .|....      ...  ....++|.+..... .  ..  .++.+..+++|++++++...
T Consensus        73 ~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~  135 (156)
T PRK00714         73 RDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQ  135 (156)
T ss_pred             CCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHh
Confidence                221110      000  11345666665321 1  11  12345689999999987654

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=8.4e-17  Score=111.95  Aligned_cols=97  Identities=25%  Similarity=0.309  Sum_probs=72.5

Q ss_pred             eEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (163)
                      +++||+++..  .+.|.+|||++++||++.++|.||+.||+|+.+..... .+.+.+...........++|.+.......
T Consensus        12 ~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (123)
T cd02883          12 GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVESPDEGEHAVVFVFLARLVGGEP   90 (123)
T ss_pred             CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEeeccCCCceEEEEEEEEEeCCCCc
Confidence            4799999987  58999999999999999999999999999999765444 55555554433445667788777654322


Q ss_pred             C-CCcCcceeEEEEecCCCcc
Q 031232          141 E-WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       141 ~-~~~~e~~~~~W~~~~e~~~  160 (163)
                      . ....+..+.+|++++++..
T Consensus        91 ~~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          91 TLLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             CCCCCCccceEEEEcHHHCcc
Confidence            1 2233457889999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.72  E-value=5e-17  Score=134.47  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee--
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG--  113 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~--  113 (163)
                      .++|++|+++.+             +|||++|..   .|.|.+|||++++|||+++||+||++||||+++..... .+  
T Consensus       203 ~vtv~avv~~~g-------------~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~  268 (340)
T PRK05379        203 FVTVDAVVVQSG-------------HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSI  268 (340)
T ss_pred             ceEEEEEEEECC-------------EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceee
Confidence            478888887642             799999875   36799999999999999999999999999998654432 22  


Q ss_pred             ----EEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          114 ----EWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ----~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                          .+.+...........++|.+......  .....++..+++|++++++..
T Consensus       269 ~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~  321 (340)
T PRK05379        269 RDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA  321 (340)
T ss_pred             eeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence                12222211122344566666554321  122344568999999998764

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.72  E-value=3.9e-17  Score=123.98  Aligned_cols=136  Identities=20%  Similarity=0.205  Sum_probs=81.2

Q ss_pred             cccccccccccccccccCCCcccccCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCE-EecCccc
Q 031232           10 IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGW   83 (163)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPGG~v   83 (163)
                      .+..|+..|.++......-+.....+.-+..++.+++++            +.++|||.+|...     |.| .+|||++
T Consensus         8 ~~e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~------------~~g~iLL~~R~~~~~~~pg~~~~~pGG~v   75 (180)
T PRK15393          8 STEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHD------------GMGKILVQRRTETKDFLPGMLDATAGGVV   75 (180)
T ss_pred             CceEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEEC------------CCCeEEEEEeCCCCCCCCCcccccCCCcC
Confidence            345566666666332222111222222334444444443            2357999887643     334 6899999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232           84 EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus        84 e~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ++|||+++||.||++||||+.+..... ++.+.+...  ......++|.+..... ......+..+++|++++++...
T Consensus        76 e~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~~~  149 (180)
T PRK15393         76 QAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSHGP-FALQEEEVSEVCWMTPEEITAR  149 (180)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeCCC-CCCChHHeeEEEECCHHHHhhh
Confidence            999999999999999999998655444 565544332  2223334555544322 1222334578999999988653

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.71  E-value=1.9e-16  Score=113.82  Aligned_cols=92  Identities=15%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      +|||++|...    |.|.||||++++|||+.+||.||++||||+++..... ++.+.+...  ......++|.+......
T Consensus        16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~   92 (135)
T PRK10546         16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVS--GRRIHLHAWHVPDFHGE   92 (135)
T ss_pred             EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecC--CcEEEEEEEEEEEecCc
Confidence            7999988653    6799999999999999999999999999999876555 655554433  22344556655443221


Q ss_pred             CCCCcCcceeEEEEecCCCcc
Q 031232          140 AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .  ...+..+++|++++++..
T Consensus        93 ~--~~~e~~~~~W~~~~el~~  111 (135)
T PRK10546         93 L--QAHEHQALVWCTPEEALR  111 (135)
T ss_pred             c--cccccceeEEcCHHHccc
Confidence            1  122346789999998764

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.71  E-value=8.6e-17  Score=128.28  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             eEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232           63 LEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        63 ~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (163)
                      +++||++++..  +.|.+|||++|+|||+++||.||++||||+++..... ++...+...    ....+.|.+.......
T Consensus       143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~  217 (256)
T PRK00241        143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEI  217 (256)
T ss_pred             CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCcc
Confidence            47999987643  7899999999999999999999999999999877666 665443322    1344567666543322


Q ss_pred             CCCcCcceeEEEEecCCCcc
Q 031232          141 EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       141 ~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ...+.|..+++||+++++..
T Consensus       218 ~~~~~Ei~~a~W~~~del~~  237 (256)
T PRK00241        218 VFDPKEIADAQWFRYDELPL  237 (256)
T ss_pred             cCCcccEEEEEEECHHHCcc
Confidence            22334557899999998754

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.5e-16  Score=116.58  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             eEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee----ceeeeEEEEeeCC-----C-CceEE
Q 031232           63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA-----H-NTDYQ  127 (163)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~----~~~l~~~~~~~~~-----~-~~~~~  127 (163)
                      ++|||++|..     .|.|.+|||++++||++++||+||++||||+.+...    +. ++.+.+....     . .....
T Consensus        13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~   91 (143)
T cd04694          13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHI   91 (143)
T ss_pred             CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeE
Confidence            4799999864     267999999999999999999999999999987653    33 5554332111     1 11222


Q ss_pred             EEEEEEEeccc-----cCCCC-cCcceeEEEEecCCCccC
Q 031232          128 GYMFPLLVQDQ-----LAEWP-EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       128 ~~~f~~~~~~~-----~~~~~-~~e~~~~~W~~~~e~~~~  161 (163)
                      ..+|.......     ....+ ..+..+++|+++++|.++
T Consensus        92 ~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          92 VVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             EEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence            22222222211     01112 235678999999988754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.68  E-value=2.2e-16  Score=120.27  Aligned_cols=95  Identities=20%  Similarity=-0.011  Sum_probs=66.5

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||+++.+.    ..|+||||.+|+||++++||+||++||||+.+..... ++.+........  ...++|.+.....
T Consensus        59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~~~~~~--~~~~~f~a~~~~~  135 (185)
T PRK11762         59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLAPSYFS--SKMNIVLAEDLYP  135 (185)
T ss_pred             CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecCCCccC--cEEEEEEEEcccc
Confidence            47999998654    4599999999999999999999999999999888777 776654332222  3344555543222


Q ss_pred             c-CCCCcCcceeEEEEecCCCcc
Q 031232          139 L-AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~-~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      . ....+.+..+..|++++++..
T Consensus       136 ~~~~~~e~E~i~~~~~~~~e~~~  158 (185)
T PRK11762        136 ERLEGDEPEPLEVVRWPLADLDE  158 (185)
T ss_pred             ccCCCCCCceeEEEEEcHHHHHH
Confidence            1 122233346889999887654

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.68  E-value=2.5e-16  Score=119.82  Aligned_cols=110  Identities=18%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      ...++++++++.            +++|||++|...     |.|.+| ||++++|||+++||+||++||||+++......
T Consensus        33 ~h~av~v~i~~~------------~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~  100 (184)
T PRK03759         33 LHLAFSCYLFDA------------DGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELV  100 (184)
T ss_pred             eeeEEEEEEEcC------------CCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccc
Confidence            356666666653            347999987532     567764 89999999999999999999999997643332


Q ss_pred             eeEEEEeeCC-CCc--eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRA-HNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+.... ...  ....++|.+...... ....++..+++|++++++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~-~~~~~Ev~~~~W~~~~el~~  151 (184)
T PRK03759        101 LPDFRYRATDPNGIVENEVCPVFAARVTSAL-QPNPDEVMDYQWVDPADLLR  151 (184)
T ss_pred             cceEEEEEecCCCceeeEEEEEEEEEECCCC-CCChhHeeeEEEECHHHHHH
Confidence            5555443221 111  224457777655322 22223457899999988754

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.68  E-value=9e-16  Score=117.50  Aligned_cols=111  Identities=19%  Similarity=0.151  Sum_probs=74.2

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeecee
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      .+.+|++|++...          ++.+|||++|..     .|.|+||||++|++ |++++||+||++||||+....... 
T Consensus        29 ~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~-   97 (190)
T PRK10707         29 QRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV-   97 (190)
T ss_pred             CCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE-
Confidence            3456667767642          335788888653     27899999999985 689999999999999999877777 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~  161 (163)
                      ++.+.......+  .....|.+.+.......+ ++|..++.|++++++...
T Consensus        98 lg~l~~~~~~~~--~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~  146 (190)
T PRK10707         98 IGVLPPVDSSTG--YQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL  146 (190)
T ss_pred             EEEeeeeeccCC--cEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence            777654333222  223334333333222223 234578999999887653

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.6e-16  Score=112.26  Aligned_cols=107  Identities=21%  Similarity=0.215  Sum_probs=71.9

Q ss_pred             EEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCee-eeeceeeeE
Q 031232           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGE  114 (163)
Q Consensus        41 ~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~-~~~~~~l~~  114 (163)
                      ++++++++.+            ++|||+++...     +.|.+|||++++||++.+||.||++||||+.+ ..... +..
T Consensus         2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~   68 (133)
T cd04685           2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWR   68 (133)
T ss_pred             eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEE
Confidence            5678888653            37999987642     57999999999999999999999999999997 44333 332


Q ss_pred             EE--EeeCCCCceEEEEEEEEEecccc---CCC--CcC-cceeEEEEecCCCcc
Q 031232          115 WN--FKSRAHNTDYQGYMFPLLVQDQL---AEW--PEK-NVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~--~~~~~~~~~~~~~~f~~~~~~~~---~~~--~~~-e~~~~~W~~~~e~~~  160 (163)
                      ..  +...........++|.+......   ...  .+. +...++|+++++...
T Consensus        69 ~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~  122 (133)
T cd04685          69 RDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA  122 (133)
T ss_pred             EEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence            22  32232233345678887765321   111  111 135789999998654

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=2.3e-15  Score=108.12  Aligned_cols=100  Identities=26%  Similarity=0.265  Sum_probs=60.9

Q ss_pred             CceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc-c
Q 031232           61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ-L  139 (163)
Q Consensus        61 ~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~  139 (163)
                      +..+||+.+... +.|.||||++++|||+.+||.||++||||+.+.......+.+.....  ...+..+++.+.+... .
T Consensus        12 ~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~   88 (126)
T cd04663          12 EVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLP   88 (126)
T ss_pred             ceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCc
Confidence            346777776654 56999999999999999999999999999997332221232211110  1122333444433211 1


Q ss_pred             CCC------CcCcceeEEEEecCCCccCCC
Q 031232          140 AEW------PEKNVRSRKWVCTFMPVTCFL  163 (163)
Q Consensus       140 ~~~------~~~e~~~~~W~~~~e~~~~~~  163 (163)
                      ..+      ++.+...+.|++++++...+|
T Consensus        89 ~~~~~~~~~~E~~~i~~~Wv~l~~~~~~~~  118 (126)
T cd04663          89 DSWVHFVQDDGGHEFRFFWVDLASCLDEFL  118 (126)
T ss_pred             ccccCcccCCCCceEEEEEEccccccccce
Confidence            111      222234566999999877654

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.67  E-value=2.2e-15  Score=106.85  Aligned_cols=93  Identities=17%  Similarity=0.209  Sum_probs=65.4

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||.+|...    |.|.||||++++||++.+||.||++||||+.+..... ++.+.+....  .....++|.+.....
T Consensus        16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~   92 (129)
T PRK10776         16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEG   92 (129)
T ss_pred             CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECC
Confidence            47999998653    6899999999999999999999999999998765555 5555544332  234445565543322


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      . . ...+..+.+|++++++..
T Consensus        93 ~-~-~~~e~~~~~W~~~~~l~~  112 (129)
T PRK10776         93 E-P-WGKEGQPGRWVSQVALNA  112 (129)
T ss_pred             c-c-CCccCCccEEecHHHCcc
Confidence            1 1 122346789999998654

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.65  E-value=9.9e-16  Score=118.31  Aligned_cols=108  Identities=19%  Similarity=0.059  Sum_probs=74.2

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCC---------CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~---------~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      -+|++|++..           ++++|||+++.+.+         .|++|+|.+|+||+|++||+||+.||||+.+.....
T Consensus        50 ~~V~il~~~~-----------~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~  118 (202)
T PRK10729         50 HAAVLLPFDP-----------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP  118 (202)
T ss_pred             CeEEEEEEEC-----------CCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE
Confidence            4566677753           23479999987652         389999999999999999999999999999877666


Q ss_pred             eeeEEEEeeCCCCceEEEEEEEEEeccc---c--CCCCcCcceeEEEEecCCCccC
Q 031232          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ---L--AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~---~--~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                       ++.+.....  ......++|.+.....   .  ....+.|..++.|++++++...
T Consensus       119 -l~~~~~spg--~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~  171 (202)
T PRK10729        119 -VLSYLASPG--GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  171 (202)
T ss_pred             -EEEEEcCCC--cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHH
Confidence             655433222  2234556777764221   1  1222334478999999987653

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.64  E-value=2.2e-15  Score=114.72  Aligned_cols=45  Identities=24%  Similarity=0.184  Sum_probs=41.4

Q ss_pred             CCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232           60 EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT  104 (163)
Q Consensus        60 ~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~  104 (163)
                      +...+||+++|...+.|.||||++++||++.+||.||++||||+.
T Consensus        46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            356899999998889999999999999999999999999999765

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.64  E-value=6e-15  Score=103.39  Aligned_cols=93  Identities=19%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      +++||++|...    |.|.||||+++++|++++||.||++||||+.+..... ++.+.+...  ......++|.+.....
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~   89 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSG   89 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCC
Confidence            47999988643    6899999999999999999999999999999776555 665554433  2344556676654432


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..  ...+.....|++++++..
T Consensus        90 ~~--~~~e~~~~~W~~~~el~~  109 (124)
T cd03425          90 EP--QLLEHQELRWVPPEELDD  109 (124)
T ss_pred             Cc--ccccCceEEEeeHHHccc
Confidence            21  123356899999998754

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.64  E-value=1.1e-15  Score=116.65  Aligned_cols=109  Identities=17%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      ..+|++|++..           ++.+|||+++.+.         ..|+||||++++||++++||+||++||||+.+....
T Consensus        44 ~~~v~vl~~~~-----------~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~  112 (185)
T TIGR00052        44 GNAAAVLLYDP-----------KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR  112 (185)
T ss_pred             CCeEEEEEEEC-----------CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE
Confidence            34566666643           3457999997542         358899999999999999999999999999987666


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEecccc----CCCCcCcceeEEEEecCCCccC
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL----AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      . ++.+....  .......++|.+.+....    ....+.+..+..|++++++...
T Consensus       113 ~-~~~~~~~~--g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~  165 (185)
T TIGR00052       113 K-LLSFYSSP--GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW  165 (185)
T ss_pred             E-EEEEEcCC--CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence            6 65543222  223456677877755321    1122334478999999877543

>TIGR00586 mutt mutator mutT protein

Probab=99.64  E-value=9.9e-15  Score=103.67  Aligned_cols=93  Identities=17%  Similarity=0.064  Sum_probs=65.8

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      +++||.+|...    |.|.||||++++|||+++||.||+.||||+.+..... ++.+.+...  ......++|.+...+.
T Consensus        16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~   92 (128)
T TIGR00586        16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGG   92 (128)
T ss_pred             CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCC
Confidence            47998888653    6899999999999999999999999999999776555 555544332  2345566666655432


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ...  ..+..+.+|+++++...
T Consensus        93 ~~~--~~~~~~~~W~~~~~l~~  112 (128)
T TIGR00586        93 PPG--KEGQPEEWWVLVGLLAD  112 (128)
T ss_pred             CcC--cccccccEEeCHHHCCc
Confidence            111  12235789999887654

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=7e-15  Score=104.54  Aligned_cols=106  Identities=20%  Similarity=0.123  Sum_probs=64.0

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      +|..++++|+...+             ++||++|+..   +.|.||||++++|||+++||.||++||||+.+....  +.
T Consensus         2 ~p~~~av~vl~~~~-------------~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~   66 (118)
T cd04674           2 NPLPVVVALLPVDD-------------GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPAD--IR   66 (118)
T ss_pred             CCcEEEEEEEEECC-------------CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EE
Confidence            34556666655432             3677776542   789999999999999999999999999999976322  22


Q ss_pred             EEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCC
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMP  158 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~  158 (163)
                      .+..... .......+.|........  ...++.+..++.|+.+...
T Consensus        67 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~  112 (118)
T cd04674          67 LFDVRSA-PDGTLLVFGLLPERRAADLPPFEPTDETTERAVVTAPSE  112 (118)
T ss_pred             EEEEEec-CCCeEEEEEEEeccccccCCCCCCCcceeeEEEccCCcc
Confidence            2222111 122344445554433322  2234444566667665443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.64  E-value=4.1e-15  Score=110.37  Aligned_cols=89  Identities=24%  Similarity=0.267  Sum_probs=65.7

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (163)
                      ++||+++... .|.+|||++++|||+++||.||++||||+.+..... ++.+......  .....++|.+.+... ... 
T Consensus        36 ~~LL~~~~~~-~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~~~--~~~~~~vf~A~~~~~-~~~-  109 (156)
T TIGR02705        36 QWLLTEHKRR-GLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEGES--TDFVKDVYFAEVSAL-ESK-  109 (156)
T ss_pred             EEEEEEEcCC-cEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecCCC--cEEEEEEEEEEEecc-ccC-
Confidence            6999988754 599999999999999999999999999999888777 8877654332  445667777766633 222 


Q ss_pred             cCcceeEE-EEecCCCc
Q 031232          144 EKNVRSRK-WVCTFMPV  159 (163)
Q Consensus       144 ~~e~~~~~-W~~~~e~~  159 (163)
                       .+..+.. +++++++.
T Consensus       110 -~e~~E~~~~~~~~~~~  125 (156)
T TIGR02705       110 -DDYLETKGPVLLQEIP  125 (156)
T ss_pred             -CCceeeEeEEEHHHHH
Confidence             3334555 67776654

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.8e-15  Score=113.47  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             ceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeeeeece--eeeEEEEeeC-CCC--ceEEEEE
Q 031232           62 DLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVECE--LLGEWNFKSR-AHN--TDYQGYM  130 (163)
Q Consensus        62 ~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~--~l~~~~~~~~-~~~--~~~~~~~  130 (163)
                      .+++++.||...     |.| .+|||++++|||+.+||+||++|||||.......  .++.+.+... ...  .....++
T Consensus        47 ~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~  126 (180)
T cd03676          47 GLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYV  126 (180)
T ss_pred             CeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEE
Confidence            467888887653     789 5899999999999999999999999998664321  1444443332 122  2345567


Q ss_pred             EEEEeccccCCCC-cCcceeEEEEecCCCccC
Q 031232          131 FPLLVQDQLAEWP-EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       131 f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~~  161 (163)
                      |.+.+.......+ +.|..++.|++++++...
T Consensus       127 f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         127 YDLELPPDFIPAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             EEEEcCCCCeeCCCCCcEeEEEEECHHHHHHH
Confidence            7666543222222 334588999999987643

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.60  E-value=1.1e-14  Score=108.21  Aligned_cols=108  Identities=15%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeece-
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-  110 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-  110 (163)
                      ...++++++++.            .++|||.+|...     |.|.+| ||+++.||  .+||+||++|||||.+..... 
T Consensus        26 ~h~~v~v~v~~~------------~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~   91 (158)
T TIGR02150        26 LHRAFSVFLFNE------------EGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLT   91 (158)
T ss_pred             eEEEEEEEEEcC------------CCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceE
Confidence            345566666643            347999887653     789986 89999999  499999999999999765431 


Q ss_pred             eeeEEEEeeCC-CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          111 LLGEWNFKSRA-HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       111 ~l~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .++.+.+.... .+.....++|.+...... .....+..+++|++++++..
T Consensus        92 ~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~-~~~~~Ev~~~~W~~~~el~~  141 (158)
T TIGR02150        92 VLPRFSYRARDAWGEHELCPVFFARAPVPL-NPNPEEVAEYRWVSLEELKE  141 (158)
T ss_pred             EcceEEEEEecCCCcEEEEEEEEEecCCcc-cCChhHeeeEEEeCHHHHHH
Confidence            14444443322 123455577776654322 22233568999999987643

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.56  E-value=2.4e-14  Score=109.72  Aligned_cols=107  Identities=15%  Similarity=-0.049  Sum_probs=72.1

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCC----------EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKG----------MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~----------W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      -+|++|++..           +..+|||+++.+.+.          |++|+|.+|+| +|++||+||++||||+.+....
T Consensus        46 ~~v~Vl~~~~-----------~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~  113 (191)
T PRK15009         46 NGATILLYNA-----------KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR  113 (191)
T ss_pred             CEEEEEEEEC-----------CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE
Confidence            4566666653           345799999876532          89999999976 6999999999999999987777


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccc--cC--CCCcCcceeEEEEecCCCccC
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQ--LA--EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~--~~--~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      . ++.+. ...+.. ....++|.+.....  ..  ...+.|..++.|++++++...
T Consensus       114 ~-l~~~~-~spG~s-~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~  166 (191)
T PRK15009        114 K-LFELY-MSPGGV-TELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEM  166 (191)
T ss_pred             E-eeEEE-cCCccc-CcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHH
Confidence            6 66543 222222 23456666664321  11  122344578999999987654

>PLN02709 nudix hydrolase

Probab=99.52  E-value=1.1e-13  Score=107.85  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=75.4

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeece
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      ..+.++.+|++...++++     +++.+|||++|...     |.|+||||++|++ +++.+||+||+.||+||.......
T Consensus        30 ~~r~AAVLv~l~~~~~~~-----~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v  104 (222)
T PLN02709         30 PAKSSAVLVCLYQEQRED-----KNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI  104 (222)
T ss_pred             CCCccEEEEEEeeccCCC-----CCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE
Confidence            345666666665420000     24568999998753     8899999999996 579999999999999998776666


Q ss_pred             eeeEEEEeeCCCCceEEEEEEEEEecc--ccCCCCc-CcceeEEEEecCCCc
Q 031232          111 LLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPE-KNVRSRKWVCTFMPV  159 (163)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~-~e~~~~~W~~~~e~~  159 (163)
                       +|.........+  +.++-|.+.+..  .....+. .|..++.|++++...
T Consensus       105 -lg~L~~~~t~sg--~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll  153 (222)
T PLN02709        105 -ISVLEPFVNKKG--MSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFL  153 (222)
T ss_pred             -eeecCCeECCCC--CEEEEEEEEecCCCCccccCChhhhheeEEecHHHHh
Confidence             666544333222  344556555542  1121222 356889999987654

>PRK08999 hypothetical protein; Provisional

Probab=99.48  E-value=5.5e-13  Score=108.78  Aligned_cols=93  Identities=17%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||.+|...    |.|.||||++++||++.+||.||++||||+.+..... ++.+.+....  .....++|.+.....
T Consensus        17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~~--~~~~i~~y~~~~~~~   93 (312)
T PRK08999         17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYPD--KRVRLDVRRVTAWQG   93 (312)
T ss_pred             CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcCC--CeEEEEEEEEEEecC
Confidence            37999988653    6899999999999999999999999999999776555 5555444332  234556666544322


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..  ...+..+++|+++++...
T Consensus        94 ~~--~~~e~~~~~Wv~~~el~~  113 (312)
T PRK08999         94 EP--HGREGQPLAWVAPDELAV  113 (312)
T ss_pred             cc--cCccCCccEEecHHHccc
Confidence            11  122346789999887654

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.48  E-value=4.9e-13  Score=94.90  Aligned_cols=98  Identities=24%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             eEEEEEEEcCCC-CEEecCcccCCCCCHHH-HHHHHHHHHhCCeeee--eceeeeEEEEeeCCCC---ceEEEEEEEEEe
Q 031232           63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGIV--ECELLGEWNFKSRAHN---TDYQGYMFPLLV  135 (163)
Q Consensus        63 ~~vLLv~r~~~~-~W~lPGG~ve~gEs~~e-aA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~---~~~~~~~f~~~~  135 (163)
                      .++|+.+++..+ .|.+|||++++||++.+ ||+||++||||+.+..  ... ++.+........   ......++....
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEV  102 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeec
Confidence            579999988876 99999999999999888 9999999999999873  334 555443322221   112222222221


Q ss_pred             cc--ccCCCC----cCcceeEEEEecCCCccC
Q 031232          136 QD--QLAEWP----EKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       136 ~~--~~~~~~----~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  ......    ..+.....|+++++....
T Consensus       103 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  134 (161)
T COG0494         103 DDSLAVAIEGLSAPSEELEDLEWVPLDELAAL  134 (161)
T ss_pred             cccccccccccCCCcchhhceeeeeHHHcccc
Confidence            11  111111    134578999998876554

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.45  E-value=1e-13  Score=110.64  Aligned_cols=93  Identities=16%  Similarity=0.128  Sum_probs=66.7

Q ss_pred             EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCC
Q 031232           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (163)
Q Consensus        64 ~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (163)
                      ++||.++.++  |.+++-.|+||+|||+++|+.||++||+||++...+. ++.-.+..+.+   .+ .-|.+........
T Consensus       156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP~S---LM-igf~aey~sgeI~  230 (279)
T COG2816         156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFPHS---LM-LGFMAEYDSGEIT  230 (279)
T ss_pred             ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCchh---hh-hhheeeecccccc
Confidence            3888887654  8899999999999999999999999999999988777 65544443321   22 2333443333223


Q ss_pred             CCcCcceeEEEEecCCCccC
Q 031232          142 WPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       142 ~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..+.|..+++||+.+|++..
T Consensus       231 ~d~~Eleda~WFs~~evl~~  250 (279)
T COG2816         231 PDEGELEDARWFSRDEVLPA  250 (279)
T ss_pred             CCcchhhhccccCHhHHhhh
Confidence            33346689999999996554

>PLN03143 nudix hydrolase; Provisional

Probab=99.36  E-value=6.7e-12  Score=101.58  Aligned_cols=46  Identities=17%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             CceEEEEEEEcCC--C--CEEecCcccCC-CCCHHHHHHHHHHHHhCCeee
Q 031232           61 EDLEVLVISSQKG--K--GMLFPKGGWEI-DESIQEAALRETIEEAGVTGI  106 (163)
Q Consensus        61 ~~~~vLLv~r~~~--~--~W~lPGG~ve~-gEs~~eaA~REl~EEtGl~~~  106 (163)
                      ++.+|||+++.+.  +  .|+||||.+|+ +|++++||+||++||||+.+.
T Consensus       141 ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~  191 (291)
T PLN03143        141 GETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK  191 (291)
T ss_pred             CCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence            4456899988763  3  48999999998 589999999999999999854

>PLN02791 Nudix hydrolase homolog

Probab=99.21  E-value=7.6e-11  Score=105.81  Aligned_cols=134  Identities=18%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             cccccccccccccccCCCccccc---CCC-CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEe-cCc
Q 031232           12 SLVTPENVVGNLVSRTGRHLQRY---QKG-RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKG   81 (163)
Q Consensus        12 ~~~~~~~~~~~~~~~~g~~~~~~---~~~-~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PGG   81 (163)
                      +.|+..+..+   ..+|....+.   ..+ ...++.+.+|+.           +++++||.+|..     +|.|.+ |||
T Consensus         4 E~~DI~De~g---~~~G~~~~R~evH~~Gl~HrAvhVwIfn~-----------~~gelLLQkRS~~K~~~PG~WDiS~gG   69 (770)
T PLN02791          4 EHLDVLTAAG---EKTGVSKPRGEVHRDGDYHRAVHVWIYSE-----------STQELLLQRRADCKDSWPGQWDISSAG   69 (770)
T ss_pred             eEEEEECCCC---CCCCccccHHhhccCCCceEEEEEEEEEC-----------CCCeEEEEEecCCCCCCCCcccCcCCC
Confidence            4566666666   5566643333   233 345555666653           235788888765     278999 799


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCeeeeec-eeeeEEEEeeC--C--CCceEEEEEEEEEecccc---CC-CCcCcceeEEE
Q 031232           82 GWEIDESIQEAALRETIEEAGVTGIVEC-ELLGEWNFKSR--A--HNTDYQGYMFPLLVQDQL---AE-WPEKNVRSRKW  152 (163)
Q Consensus        82 ~ve~gEs~~eaA~REl~EEtGl~~~~~~-~~l~~~~~~~~--~--~~~~~~~~~f~~~~~~~~---~~-~~~~e~~~~~W  152 (163)
                      |++.|||+++||+||++||+||.+.... ..++.+.+...  .  .......++|.+......   .. ..+.|..+++|
T Consensus        70 Hv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~w  149 (770)
T PLN02791         70 HISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKY  149 (770)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEE
Confidence            9999999999999999999999854322 11454432211  1  112234455555322111   11 12345689999


Q ss_pred             EecCCCc
Q 031232          153 VCTFMPV  159 (163)
Q Consensus       153 ~~~~e~~  159 (163)
                      +++++..
T Consensus       150 vsl~El~  156 (770)
T PLN02791        150 MSIEEYK  156 (770)
T ss_pred             EcHHHHH
Confidence            9998765

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.17  E-value=2.9e-10  Score=90.22  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCC----C-------------CHHHHH
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEID----E-------------SIQEAA   93 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~g----E-------------s~~eaA   93 (163)
                      -...++.+++|+.            .+++||.||...     |.|... +|++..|    |             +..+||
T Consensus        54 l~Hra~~v~i~n~------------~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA  121 (247)
T PLN02552         54 LLHRAFSVFLFNS------------KYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA  121 (247)
T ss_pred             ceEEEEEEEEEcC------------CCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence            4456777777754            247888888654     579553 4544433    2             167999


Q ss_pred             HHHHHHHhCCeeee-----eceeeeEEEEeeCCC------C---ceEEEEEEEEEeccccCCCC-cCcceeEEEEecCCC
Q 031232           94 LRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMP  158 (163)
Q Consensus        94 ~REl~EEtGl~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~  158 (163)
                      +||++||+||....     ... ++.+.+.....      .   .....++|...........+ .+|..+++|+++++.
T Consensus       122 ~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el  200 (247)
T PLN02552        122 QRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREEL  200 (247)
T ss_pred             HhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHH
Confidence            99999999998542     233 55555544322      1   12222223222221112222 334589999999876


Q ss_pred             cc
Q 031232          159 VT  160 (163)
Q Consensus       159 ~~  160 (163)
                      ..
T Consensus       201 ~~  202 (247)
T PLN02552        201 KE  202 (247)
T ss_pred             HH
Confidence            54

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.16  E-value=4.8e-11  Score=96.16  Aligned_cols=65  Identities=26%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             cCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        34 ~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      |......++.+|+-++            ..+.||.++++.  |.|..++|++|+|||++|||+||++||||+++.....
T Consensus       183 yPr~dPvVIm~li~~d------------~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~  249 (345)
T KOG3084|consen  183 YPRTDPVVIMLLIDHD------------GKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY  249 (345)
T ss_pred             ccCCCCeEEEEEEcCC------------CCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEee
Confidence            3334456666655543            235677665543  7899999999999999999999999999999887554

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=99.10  E-value=2e-10  Score=81.45  Aligned_cols=69  Identities=26%  Similarity=0.266  Sum_probs=55.6

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEc-------CCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~-------~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      |..++|+++++..         .+...|||++..       +.|.|++|.|-...||.+..||+||.-||+||.++--..
T Consensus         2 pK~SAGvLlYR~~---------aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~   72 (161)
T COG4119           2 PKLSAGVLLYRAR---------AGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI   72 (161)
T ss_pred             CcccceeEEEEec---------CCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence            5688999999986         466788998753       347899999999999999999999999999998753322


Q ss_pred             eeeEE
Q 031232          111 LLGEW  115 (163)
Q Consensus       111 ~l~~~  115 (163)
                      .+|.+
T Consensus        73 ~lG~~   77 (161)
T COG4119          73 DLGSL   77 (161)
T ss_pred             hhhhh
Confidence            25543

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.03  E-value=5.5e-09  Score=79.30  Aligned_cols=50  Identities=24%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             CCceEEEEEEEcCC--CC--EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           60 EEDLEVLVISSQKG--KG--MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        60 ~~~~~vLLv~r~~~--~~--W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      +++..++|+++.+.  |.  .+||+|-|+.||+++.||+||++||||+......
T Consensus        85 dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~  138 (225)
T KOG3041|consen   85 DGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM  138 (225)
T ss_pred             CCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee
Confidence            36678999998765  55  5679999999999999999999999999965544

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.94  E-value=2.6e-09  Score=83.07  Aligned_cols=112  Identities=22%  Similarity=0.149  Sum_probs=67.3

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCC-CCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~g-Es~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      +-++.+|++....        .++.+|||.+|...     |.-+||||+.++. +|-..||.||..||.|+....... +
T Consensus        42 ~~~aVlI~L~~~~--------~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~  112 (246)
T KOG3069|consen   42 RKAAVLIPLVQVG--------SGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-L  112 (246)
T ss_pred             CCccEEEEEEEcC--------CCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-h
Confidence            4555666665431        35678999988653     7899999999984 578889999999999999765444 4


Q ss_pred             eEEEEeeCCCC-ceEEEEEEEEEeccccCC-CCcCcceeEEEEecCCCc
Q 031232          113 GEWNFKSRAHN-TDYQGYMFPLLVQDQLAE-WPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       113 ~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~~~e~~  159 (163)
                      |.......... ...-...|.....-.... ....|..++.|+++++.+
T Consensus       113 g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll  161 (246)
T KOG3069|consen  113 GALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLL  161 (246)
T ss_pred             hhccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHh
Confidence            44321111111 111112222221100111 122345789999988755

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=8.6e-10  Score=88.69  Aligned_cols=111  Identities=23%  Similarity=0.237  Sum_probs=69.7

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      ..++.+++.+++.+            .+||+++....     |.|.+|+|.|+++|++.++|+||++||||++...... 
T Consensus       113 sh~vgvg~~V~n~~------------~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV-  179 (295)
T KOG0648|consen  113 SHRVGVGAFVLNKK------------KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV-  179 (295)
T ss_pred             hhheeeeeeEecCC------------ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhH-
Confidence            44677777777642            57999986543     7899999999999999999999999999997554443 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEecc--ccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +..-+.............||.+....  ........++..++|+++.+-+.
T Consensus       180 la~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~  230 (295)
T KOG0648|consen  180 LAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVS  230 (295)
T ss_pred             HHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhc
Confidence            21111111110101223445554432  12233444556679999886544

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.73  E-value=1.8e-07  Score=64.94  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=57.0

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      +++||.||...    |.|+||+|.++.+|+.+++..|++.++.++   .... ++.+.+..+  .......+|.+.....
T Consensus        14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~ft--h~~~~~~~~~~~~~~~   87 (118)
T cd03431          14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFT--HFRLTLHVYLARLEGD   87 (118)
T ss_pred             CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecC--CeEEEEEEEEEEEeCC
Confidence            36888888654    689999999999999999999999998765   1122 333333332  2234556676655432


Q ss_pred             cCCCCcCcceeEEEEecCCCc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .     .+..+.+|+++++..
T Consensus        88 ~-----~~~~~~~W~~~eel~  103 (118)
T cd03431          88 L-----LAPDEGRWVPLEELD  103 (118)
T ss_pred             C-----cCccccEEccHHHHh
Confidence            1     123467999987654

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>PLN02839 nudix hydrolase

Probab=98.60  E-value=2.8e-07  Score=76.55  Aligned_cols=99  Identities=14%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             CceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeee---eeceeeeEEEEeeCCCC--ceEEEE
Q 031232           61 EDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHN--TDYQGY  129 (163)
Q Consensus        61 ~~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~---~~~~~l~~~~~~~~~~~--~~~~~~  129 (163)
                      ++.++.+-||...     |.| .+.+|.+..||++.++++||+.||+||...   .... .|.+.|......  .....+
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly  294 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLF  294 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEE
Confidence            4456666655432     677 458999999999999999999999999743   2233 777776643322  234566


Q ss_pred             EEEEEeccccCCCCcC-cceeEEEEecCCCcc
Q 031232          130 MFPLLVQDQLAEWPEK-NVRSRKWVCTFMPVT  160 (163)
Q Consensus       130 ~f~~~~~~~~~~~~~~-e~~~~~W~~~~e~~~  160 (163)
                      +|.+.+.....+.+.+ |..++.+++++|+..
T Consensus       295 ~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~  326 (372)
T PLN02839        295 CYDLELPQDFVPKNQDGEVESFKLIPVAQVAN  326 (372)
T ss_pred             EeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence            7888877655444444 457899999888753

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=98.39  E-value=4.6e-07  Score=70.06  Aligned_cols=65  Identities=22%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             CCeEEEEEEEEEeec--Ccc-cccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHh
Q 031232           37 GRRQVVGCIPYRYKC--VKQ-SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA  101 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~--~~~-~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEt  101 (163)
                      +|..+++-|+-+-+-  +++ -++-...-.+++.|+|...+.|.+|||.+++||.+-.+.+||+.||.
T Consensus       110 GPNHaadPiVtRwkrd~~gai~~~sgk~ile~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  110 GPNHAADPIVTRWKRDEDGAICRKSGKKILEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             CCccccCcceeeeeecCCCCeeecccceeeEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            777888877776531  111 01111223678899999999999999999999999999999999995

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.27  E-value=1.4e-06  Score=65.23  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=74.3

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeee--ece
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECE  110 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~  110 (163)
                      ..+..+.+|+.+            +++||.||...     +.|.= .-||--+|||...||+|-+.+|.||+...  ...
T Consensus        33 HrAFS~~lFne~------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~  100 (185)
T COG1443          33 HRAFSSFLFNER------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE  100 (185)
T ss_pred             HhhhheeEECCC------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence            577788888754            45777666432     45632 45676699999999999999999999762  223


Q ss_pred             eeeEEEEeeCCCCc---eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccCC
Q 031232          111 LLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTCF  162 (163)
Q Consensus       111 ~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~  162 (163)
                      ++..|.|.....+.   .-+.++|.+.........| +|..+++|+++++....+
T Consensus       101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~np-dEV~~~~wv~~e~l~~~~  154 (185)
T COG1443         101 ILPRFRYRAADPDGIVENEICPVLAARLDSALDPNP-DEVMDYRWVSPEDLKEMV  154 (185)
T ss_pred             cccceEEeccCCCCcceeeeeeEEEEeecCCCCCCh-HHhhheeccCHHHHHHhh
Confidence            36667776665443   3344556666555434333 346899999998765543

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.90  E-value=0.00011  Score=51.16  Aligned_cols=91  Identities=14%  Similarity=0.021  Sum_probs=53.1

Q ss_pred             ceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        62 ~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++++||.||...    |.|+||.--.+. ++..+.+.+.+.+..|+.+..... ++.+.+..+.  ......+|.+.+..
T Consensus         8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fSH--~~~~~~~~~~~~~~   83 (114)
T PF14815_consen    8 QGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFSH--RRWTIHVYEVEVSA   83 (114)
T ss_dssp             TSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-SS--EEEEEEEEEEEEE-
T ss_pred             CCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhee-cCcEEEEccc--eEEEEEEEEEEecC
Confidence            357999988774    789999977774 334566666677888988777665 7776665543  35667778777665


Q ss_pred             ccCCCCcCcceeEEEEecCCCcc
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....    .....+|+++++...
T Consensus        84 ~~~~----~~~~~~W~~~~~l~~  102 (114)
T PF14815_consen   84 DPPA----EPEEGQWVSLEELDQ  102 (114)
T ss_dssp             SS--------TTEEEEEGGGGGG
T ss_pred             CCCC----CCCCcEEEEHHHHhh
Confidence            4222    235899999988643

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.60  E-value=0.0002  Score=54.52  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             cccCC-CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232           32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT  104 (163)
Q Consensus        32 ~~~~~-~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~  104 (163)
                      ..|++ +-|.+|.+|++...         -+--+|||+|.. ...|.||||.+.+||+..++..|.+.+-.|..
T Consensus        35 ~~y~~~GmRrsVe~Vllvh~---------h~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   35 ENYEKEGMRRSVEGVLLVHE---------HGHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             HHHHHHSSEEEEEEEEEEEE---------TTEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             HHHHHhCCceEEEEEEEEec---------CCCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            35554 77888888877654         466789999964 35899999999999999999999999998876

...

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.50  E-value=3.5e-05  Score=62.91  Aligned_cols=59  Identities=31%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~  106 (163)
                      .+..+.|++++...           .-++||++......|.+|-|++..+|+-..||+||+.||||.+..
T Consensus        80 ~~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   80 ARIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             CCCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence            44566778888653           346899988777779999999999999999999999999999865

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.42  E-value=0.0011  Score=49.28  Aligned_cols=95  Identities=23%  Similarity=0.098  Sum_probs=59.2

Q ss_pred             EEEEEEEcCC-------CCEEe-cCcccCCCC---CHHHH----HHHHHHHHhCCee---eeeceeeeEEEEeeCCCCce
Q 031232           64 EVLVISSQKG-------KGMLF-PKGGWEIDE---SIQEA----ALRETIEEAGVTG---IVECELLGEWNFKSRAHNTD  125 (163)
Q Consensus        64 ~vLLv~r~~~-------~~W~l-PGG~ve~gE---s~~ea----A~REl~EEtGl~~---~~~~~~l~~~~~~~~~~~~~  125 (163)
                      +||+..|..+       +.+++ -|||+..++   |.++.    +.||+.||.++.-   ..... +|-+......-+..
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkV  151 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKV  151 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceE
Confidence            7999888643       56777 699997653   33333    6799999999983   33333 55443332223345


Q ss_pred             EEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          126 YQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       126 ~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      ++..+|............+.+..+.+|+...+.-
T Consensus       152 HiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele  185 (203)
T COG4112         152 HIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELE  185 (203)
T ss_pred             EEEEEEEeeccccceeeeecceeeeeeeeHHHHH
Confidence            6777787765542222233445788999877653

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.05  E-value=0.0023  Score=51.96  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=48.5

Q ss_pred             EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232           76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        76 W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (163)
                      .+|-+|.|+..-||.+-|..|+.||.|.++....+ +..+.|.........-.+.|.+.+.+..+
T Consensus        81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~k  144 (405)
T KOG4432|consen   81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMK  144 (405)
T ss_pred             eeeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhc
Confidence            45679999999999999999999999999988777 77777765544433344566666665433

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=96.34  E-value=0.0038  Score=46.81  Aligned_cols=59  Identities=22%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             ccCC-CCeEEEEEE-EEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhC
Q 031232           33 RYQK-GRRQVVGCI-PYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (163)
Q Consensus        33 ~~~~-~~~~~v~~i-i~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtG  102 (163)
                      .|.+ +-|.+|-+| ++...          .--+|||+|-. ...+.+|||.+++||+-.+...|-+-|-.|
T Consensus        62 ey~k~gmRrsvegvlivheH----------~lPHvLLLQig-~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   62 EYMKEGMRRSVEGVLIVHEH----------NLPHVLLLQIG-NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             HHHhhhhhheeeeeEEEeec----------CCCeEEEEeeC-CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            3443 445555554 55443          44679998763 357899999999999999999999999999

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=94.88  E-value=0.039  Score=43.89  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             CceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeeeeec--eeeeEEEEeeCCCC---ceEEEE
Q 031232           61 EDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAHN---TDYQGY  129 (163)
Q Consensus        61 ~~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~---~~~~~~  129 (163)
                      +..++-+-+|...     +.| .+.+|.+.-|-...++|++|..||+.+......  .+.|+.+|..-...   ..-..+
T Consensus       146 ~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qY  225 (306)
T KOG4313|consen  146 GPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQY  225 (306)
T ss_pred             CceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceE
Confidence            3355666655442     344 457999999999999999999999999863322  23566665532211   234567


Q ss_pred             EEEEEeccccCCCCcCcc-eeEEEEecCCCc
Q 031232          130 MFPLLVQDQLAEWPEKNV-RSRKWVCTFMPV  159 (163)
Q Consensus       130 ~f~~~~~~~~~~~~~~e~-~~~~W~~~~e~~  159 (163)
                      +|.+.+.....+.+.+.+ ....-+++.+.+
T Consensus       226 VfDL~l~~d~iP~~nDGEV~~F~Lltl~~~v  256 (306)
T KOG4313|consen  226 VFDLELPLDFIPQNNDGEVQAFELLTLKDCV  256 (306)
T ss_pred             EEeccCchhhcCCCCCCceeeEeeecHHHHH
Confidence            888887766555554433 556666665544

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.42  E-value=0.2  Score=40.97  Aligned_cols=82  Identities=18%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             EEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec--eeeeEEEEeeCCCCceEEEEEEEEEecccc------CCCCcCcc
Q 031232           76 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEWPEKNV  147 (163)
Q Consensus        76 W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~--~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~e~  147 (163)
                      .+|..|.|+..-|..+-|.||..||.|.+.....  . ...|.......+  ..-.+|.+.++...      ....+++.
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~-va~y~sGVG~SG--~~QTmfy~eVTdA~rsgpGgg~~ee~E~  362 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKL-VAKYISGVGQSG--DTQTMFYVEVTDARRSGPGGGEKEEDED  362 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhh-hheeecccCCcC--CeeEEEEEEeehhhccCCCCCcccccce
Confidence            5677899998899999999999999999864332  3 333332222122  22345666665422      12233445


Q ss_pred             eeEEEEecCCCcc
Q 031232          148 RSRKWVCTFMPVT  160 (163)
Q Consensus       148 ~~~~W~~~~e~~~  160 (163)
                      .+..-++++++..
T Consensus       363 IEvv~lsle~a~~  375 (405)
T KOG4432|consen  363 IEVVRLSLEDAPS  375 (405)
T ss_pred             eeEEEechhhhhH
Confidence            7788888887754

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=94.41  E-value=0.18  Score=40.18  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             eEEEEEEEcCC--CCEEecCccc-CCCCCHHHHHHHHHHHHhCCeeee---eceeeeEEEEeeCCCCc-----eEEEEEE
Q 031232           63 LEVLVISSQKG--KGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHNT-----DYQGYMF  131 (163)
Q Consensus        63 ~~vLLv~r~~~--~~W~lPGG~v-e~gEs~~eaA~REl~EEtGl~~~~---~~~~l~~~~~~~~~~~~-----~~~~~~f  131 (163)
                      .-+|||++.-+  +.|.||.+.. ++++++..+|.|.++.-.|=....   ...++|.+.+..+....     ...+++|
T Consensus       139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~  218 (263)
T KOG4548|consen  139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFF  218 (263)
T ss_pred             eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEe
Confidence            46788885533  6899999999 999999999999999998865322   22335533332222111     2334445


Q ss_pred             EEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          132 PLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       132 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .+..-... ......-.+..|++-+++..
T Consensus       219 k~~lv~~~-~~kn~n~edfvWvTkdel~e  246 (263)
T KOG4548|consen  219 KASLVANS-NQKNQNKEDFVWVTKDELGE  246 (263)
T ss_pred             eeeecccc-chhcccccceEEechHHHhh
Confidence            44332211 11111124599999887654

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.52  E-value=0.086  Score=40.68  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhCCeeeeec----eeeeEEEEeeCCCCce-EEEEEEEEEeccccCCCCcC-cceeEEEEecCCCcc
Q 031232           88 SIQEAALRETIEEAGVTGIVEC----ELLGEWNFKSRAHNTD-YQGYMFPLLVQDQLAEWPEK-NVRSRKWVCTFMPVT  160 (163)
Q Consensus        88 s~~eaA~REl~EEtGl~~~~~~----~~l~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~-e~~~~~W~~~~e~~~  160 (163)
                      -...||+|-|.-|.||......    .+++.++|........ -+..-|.+.+.......|.. |..+++|++.+|.-.
T Consensus       104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~~nPnpnEv~e~ryvs~eelke  182 (225)
T KOG0142|consen  104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKE  182 (225)
T ss_pred             HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCCCCCChhhhhHhheecHHHHHH
Confidence            4678999999999999854332    2377777776544321 12223333333334444433 358899999887543

>PF14443 DBC1: DBC1

Probab=87.17  E-value=4.4  Score=29.00  Aligned_cols=46  Identities=20%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             ceEEEEEEEcC-----CCCEEe--cCcccCC-CCCHHHHHHHHHHHHhCCeeee
Q 031232           62 DLEVLVISSQK-----GKGMLF--PKGGWEI-DESIQEAALRETIEEAGVTGIV  107 (163)
Q Consensus        62 ~~~vLLv~r~~-----~~~W~l--PGG~ve~-gEs~~eaA~REl~EEtGl~~~~  107 (163)
                      -.++|+.++.+     +|.|.-  =||--.. ..++..+|+|=+++-|||+...
T Consensus         7 ~lkFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~   60 (126)
T PF14443_consen    7 LLKFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN   60 (126)
T ss_pred             heeeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence            34566665543     255643  2444444 2467899999999999999643

>PRK10880 adenine DNA glycosylase; Provisional

Probab=87.05  E-value=5.1  Score=33.65  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVT  104 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~  104 (163)
                      ++||.+|...    |.|+||+.  +..    + ..++..|+.|+.
T Consensus       243 ~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~  280 (350)
T PRK10880        243 EVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence            6888887654    78999963  211    1 235556777875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		3e-06
2duk_A	138	Crystal Structure Of Ms0616 Length = 138		9e-06
3mcf_A	136	Crystal Structure Of Human Diphosphoinositol Polyph		4e-04

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 18/119 (15%)
Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 38  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRKW 152
           E  EEAGV G +   L+G +  + R H T    Y++ L+V + L +W +  N+ R R+W
Sbjct: 88  EVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVTEVLEDWEDSVNIGRKREW 141

>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616 Length = 138

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 35  QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAA 93
           ++G ++   C+ +R          +E++ EVL++SS +     + P GG E +E    AA
Sbjct: 6   REGFKKRAACLCFR----------SEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAA 55
Query: 94  LRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEK-NV-RSRK 151
           +RE  EEAGV G +   LLG +  + R H T    Y++ L V + L +W +  N+ R R+
Sbjct: 56  VREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVTEILEDWEDSVNIGRKRE 110
Query: 152 W 152
           W
Sbjct: 111 W 111

>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate Phosphohydrolase 3-Alpha Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
           ED  +LV SS+     + P GG E +E    AA+RE  EEAGV G +   LLG +    +
Sbjct: 15  EDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---Q 70
Query: 121 AHNTDYQGYMFPLLVQDQLAEWPEKNV---RSRKW 152
             + +++ Y++ L V + L +W E +V   R R+W
Sbjct: 71  NQDPEHRTYVYVLTVTELLEDW-EDSVSIGRKREW 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	3e-32
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	6e-10
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	6e-09
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-08
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	4e-08
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	4e-08
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-07
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-07
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	2e-07
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	3e-07
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	4e-07
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-07
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	4e-07
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	7e-07
2b06_A	155	MUTT/nudix family protein; structural genomics, P	1e-06
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-06
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-06
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-06
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	3e-06
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	5e-06
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	8e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	1e-05
3f13_A	163	Putative nudix hydrolase family member; structural	4e-05
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	4e-05
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	6e-05
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	8e-05
3grn_A	153	MUTT related protein; structural genomics, hydrola	8e-05
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	9e-05
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	9e-05
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-04
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	2e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	2e-04
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-04
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	2e-04
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	7e-04
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	8e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score =  113 bits (283), Expect = 3e-32
 Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           V L T      +++       + Y   G ++   C+ +R +          E+  +LV S
Sbjct: 11  VDLGTENLYFQSMMKLKSNQTRTYDGDGYKKRAACLCFRSE---------SEEEVLLVSS 61

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGY 129
           S+     + P GG E +E    AA+RE  EEAGV G +   L+G +  + R H T    Y
Sbjct: 62  SRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGIFENQERKHRT----Y 116

Query: 130 MFPLLVQDQLAEWPEKN--VRSRKWV 153
           ++ L+V + L +W +     R R+W 
Sbjct: 117 VYVLIVTEVLEDWEDSVNIGRKREWF 142

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEEA 101
           G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EEA
Sbjct: 12  GLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEA 68

Query: 102 GVTGIVECELLG--EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
           G+       + G          +      Y    +    +        ++ +W+
Sbjct: 69  GIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWL 122

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 43  GCIPYRYKCVKQSL-----------DINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQE 91
           G I +R+K                     + +EV ++   K     +PKG  E +E+ + 
Sbjct: 7   GGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRH 66

Query: 92  AALRETIEEAGVTGIV 107
           AA+RE  EE G    +
Sbjct: 67  AAVREIGEETGSPVKL 82

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G        +     
Sbjct: 109 LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEF 166

Query: 117 FKSRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWV 153
                   + + Y+ P +  D +      K +   +W 
Sbjct: 167 IDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWH 204

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
            NE   ++L++   +     FP+G    DE+  +  +RE  EE G    +   +      
Sbjct: 12  FNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFD--LTDYIDDNQFI 69

Query: 118 KSRAHNTDYQGYMFPLLVQD 137
           +      +Y+ ++   + + 
Sbjct: 70  ERNIQGKNYKIFLISGVSEV 89

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
           I ++D + L++        +    P G  E  ESI +A  RE +EE G +  +   L G 
Sbjct: 15  IEQDD-KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-FLPEVLTGI 72

Query: 115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPE 144
           +++   ++ T Y  + F   V     +   
Sbjct: 73  YHWTCASNGTTYLRFTFSGQVVSFDPDRKL 102

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
            + E   VLV             FP G  E+ E    AA+RE  EE G+  +      G 
Sbjct: 18  TDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR-LSGVTFCGT 76

Query: 115 WNFKSRAHNTDYQGYMF 131
             +          G ++
Sbjct: 77  CEWFDDDRQHRKLGLLY 93

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++  + C L     +
Sbjct: 26  SKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY 84

Query: 118 KSRAHNTDY 126
               H    
Sbjct: 85  FYSNHRQTA 93

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 67  VISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD 125
           ++  Q+  G+    GGW ++D+S+++  ++E  EEAG+    +  ++   +         
Sbjct: 83  ILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQ-RVVAILDKHKNNPAKS 141

Query: 126 YQGYM 130
                
Sbjct: 142 AHRVT 146

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
              E  EVL+I   K +       P G  E  E+I EA  RE  EEAG+    E  LL 
Sbjct: 27  FLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPE-TLLS 84

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 60  EEDLEVLVIS-SQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
             + + LV+  +  GK +   P G  E DE++ EAA RE  EE G++       +    +
Sbjct: 13  HAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS-AQPQHFIRMHQW 71

Query: 118 KSRAHNTDYQGYMF 131
            +    T +  ++F
Sbjct: 72  IAP-DKTPFLRFLF 84

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
              EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV   V   L
Sbjct: 12  AKREVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           + + +  + V     GK  L P GGW ++  +  E A +E  EE G       +LL  ++
Sbjct: 75  VFQNEKLLFVKEKSDGKWAL-P-GGWADVGYTPTEVAAKEVFEETGYEVDHF-KLLAIFD 131

Query: 117 FKSRAHNTDYQGYM 130
            +    +       
Sbjct: 132 KEKHQPSPSATHVY 145

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 58  INEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 113
            + E   V++              FP G  E DE+  E+ +RE  EE G+T I   +L+G
Sbjct: 16  EDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT-IQNPQLVG 74

Query: 114 --EWNFKSRAH 122
              W   +   
Sbjct: 75  IKNWPLDTGGR 85

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEE 100
            G + YR              +E L++ +         PKG  +  E   +AA+RET EE
Sbjct: 6   AGLVIYRK---------LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEE 56

Query: 101 AGVTGIVECELLGE 114
           A +T   +  +  +
Sbjct: 57  ANITK-EQLTIHED 69

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
             E + +  V+         F  GG E +E+I E A RE+IEE  +   V+   L     
Sbjct: 15  KTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHAS 74

Query: 118 KSRAHNTDYQGYMFP 132
               H +  + Y+ P
Sbjct: 75  IPNFHFSFNKPYVVP 89

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPL 133
            P G  E  ESI E   RE  EE G+T +   EL G ++            +M   
Sbjct: 30  APGGKMEAGESILETVKREYWEETGIT-VKNPELKGIFSMVIFDEGKIVSEWMLFT 84

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 58  INEEDLEVLVI-SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
            +E   ++LV+    K K M  FP G  E +E I + A+RE  EE G+       +L   
Sbjct: 34  FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFR-SVLSIR 92

Query: 116 NFKSRAHNTDYQGYMF 131
              +            
Sbjct: 93  QQHTNPGAFGKSDMYI 108

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           I +   ++LV    K KG      G  +++ES ++A +RE  EE GV       L     
Sbjct: 26  IVQNH-KLLVT---KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQ-LAFVVE 80

Query: 117 FKSRAHNTDYQGYMF 131
            +       Y    F
Sbjct: 81  NRFEVDGVSYHNIEF 95

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 64  EVLVISSQKGKGM---LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
            VL+   ++G G        G  +  E+I++ A RE  EE+G+T +     +G+  F+  
Sbjct: 37  RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLT-VDALHKVGQIVFEFV 95

Query: 121 AHNTDYQGYMF 131
                   ++F
Sbjct: 96  GEPELMDVHVF 106

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 22/80 (27%)

Query: 41  VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAA 93
               I   +          E    +++I  ++     +P  G        E+ E ++EAA
Sbjct: 11  ATDVIIRLWD--------GENFKGIVLI--ERK----YPPVGLALPGGFVEVGERVEEAA 56

Query: 94  LRETIEEAGVTGIVECELLG 113
            RE  EE G+   +  +L+G
Sbjct: 57  AREMREETGLEVRLH-KLMG 75

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS 119
           E    VLV +S+ G+    P G     E   +A +RE  EE G+  I     L +     
Sbjct: 24  EMPDGVLVTASRGGRYN-LPGGKANRGELRSQALIREIREETGLR-INSMLYLFDHITPF 81

Query: 120 RAH 122
            AH
Sbjct: 82  NAH 84

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 18/117 (15%)

Query: 24  VSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML-----F 78
           +     + Q     +R +V  +            I  +    L+      +G+       
Sbjct: 13  LGTENLYFQSNAMRQRTIVCPL------------IQNDG-CYLLCKMADNRGVFPGQWAL 59

Query: 79  PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV 135
             GG E  E I+EA  RE  EE G   I+       +    R             ++
Sbjct: 60  SGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMI 116

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
           + E   +VL++  ++    ++P G  E +E+  EA  RE  EE G+        
Sbjct: 8   LVENG-KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT 60

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVTGIVECE 110
           +NE   ++L++  +   G     G W       E  E+ Q+AA+RE  EE G+  +   +
Sbjct: 21  LNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLR-VRPVK 78

Query: 111 LLG 113
            LG
Sbjct: 79  FLG 81

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
            P G    DES++E   RE  EE G+T +V  ++ G+ NF+
Sbjct: 40  LPGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 109
           +N+E  + L+I         +  G  + ++   + A++E  EE GV      
Sbjct: 53  VNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPL 104

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 58  INEEDLEVLVI--SSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVT 104
           +     E L+   +++  +G  F  GG  + DE+++ A  R T+ E G+ 
Sbjct: 25  VENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLR 74

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 73  GKGML-FPKGGWEIDESIQEAALRETIEEAGVT 104
            +G    P G  E +E++ + A RET+EEA   
Sbjct: 63  YRGKWTLPAGFMENNETLVQGAARETLEEANAR 95

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 61  EDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVT 104
           ED +VL++  +        P G  E  E+++EA +RE  EE G+ 
Sbjct: 32  EDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLE 76

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--- 115
            +  L+ + I  +       P G  +  E I     RE  EEA  +         E    
Sbjct: 135 GKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEK 194

Query: 116 --NFKSRAHNTDYQGYMFP 132
                S+ H   Y+GY+  
Sbjct: 195 LHKLFSQDHLVIYKGYVDD 213

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 62  DLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGIVECEL 111
           D  +L+I        G    P GG  +  E ++ A  RE  EE G+       L
Sbjct: 39  DGRILLIKRKRAPEAGCWGLP-GGKVDWLEPVERAVCREIEEELGIALERATLL 91

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 58  INEEDLEVLVI------SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
             E D  VL+        + KG+ + FP G  +  E+  +AALRE  EE  +
Sbjct: 43  TREADPRVLLTVRSSELPTHKGQ-IAFPGGSLDAGETPTQAALREAQEEVAL 93

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 15/123 (12%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGI 106
            V    +   + L+VL+I       +     P GG+   +ES +++ LRET EE GV   
Sbjct: 44  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALP-GGFVNRNESTEDSVLRETKEETGVVIS 102

Query: 107 VEC-ELLGEWNFKSR---------AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTF 156
            E  E L  ++   R         ++               +   W       +    + 
Sbjct: 103 QENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSH 162

Query: 157 MPV 159
             V
Sbjct: 163 EDV 165

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 59  NEEDLEVLVI--SSQKGKGMLFPKGG-W-------EIDESIQEAALRETIEEAGVTGIVE 108
            +  L +L+I  S    +G    +GG W       + +ES ++AA RE  EE  +T I  
Sbjct: 42  GKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIP- 100

Query: 109 CELLG 113
               G
Sbjct: 101 LIPFG 105

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE 114
            P+GG +  E  + AA+RE  EE   TG+   E++ E
Sbjct: 42  MPQGGIDEGEDPRNAAIRELREE---TGVTSAEVIAE 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.9
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.88
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.87
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.87
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.86
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.86
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.85
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.85
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.85
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.85
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.85
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.84
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.84
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.84
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.84
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.84
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.83
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.82
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.82
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.82
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.82
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.82
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.82
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.82
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.82
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.81
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.81
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.81
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.81
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.81
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.81
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.81
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.81
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.81
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.8
3f13_A	163	Putative nudix hydrolase family member; structural	99.8
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.79
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.79
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.79
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.79
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.79
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.78
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.78
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.78
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.77
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.77
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.76
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.76
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.76
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.76
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.76
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.75
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.75
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.74
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.74
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.73
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.73
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.73
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.72
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.72
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.72
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.72
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.71
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.7
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.69
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.67
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.65
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.58
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.56
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.54
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.52
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.5
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.48
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.34
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.33
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.32

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.90  E-value=9.8e-24  Score=151.44  Aligned_cols=106  Identities=24%  Similarity=0.269  Sum_probs=80.6

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      ..+||+|+++.+             +|||++++ .|.|.||||++|+|||+.+||+||++||||+.+..... ++.+.+.
T Consensus         4 ~~aag~vv~~~~-------------~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-l~~~~~~   68 (134)
T 3i7u_A            4 EFSAGGVLFKDG-------------EVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDY-IGEIHYW   68 (134)
T ss_dssp             EEEEEEEEEETT-------------EEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEE
T ss_pred             EEEEEEEEEECC-------------EEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeee-eeeeeEE
Confidence            478899998753             79999875 47899999999999999999999999999999988777 7765544


Q ss_pred             eCCCCc--eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          119 SRAHNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 ~~~~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....+.  ....++|.+...+.. ..+..+..+++|++++++..
T Consensus        69 ~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~e~~~  111 (134)
T 3i7u_A           69 YTLKGERIFKTVKYYLMKYKEGE-PRPSWEVKDAKFFPIKEAKK  111 (134)
T ss_dssp             EEETTEEEEEEEEEEEEEEEEEC-CCCCTTSSEEEEEEHHHHHH
T ss_pred             ecCCCceEEEEEEEEEEEEcCCc-CcCChhheEEEEEEHHHHhh
Confidence            332222  344567777665432 33445668999999998754

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.88  E-value=3.4e-22  Score=145.88  Aligned_cols=117  Identities=22%  Similarity=0.237  Sum_probs=81.5

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      .++|+|+|+..   -..++.+++.++||++++.+ +.|.||||++++|||+.+||+||++||||+.+..... ++.+...
T Consensus         4 ra~G~iifr~~---~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   79 (155)
T 3u53_A            4 RACGLIIFRRC---LIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTI-IEGFKRE   79 (155)
T ss_dssp             CEEEEEEEEEC---CCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEE
T ss_pred             eEeEEEEEccc---cccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCcccccee-eeeEeee
Confidence            46899999852   12234467889999998764 7899999999999999999999999999999766555 4433221


Q ss_pred             --eCCCCceEEEEEEEEEeccc-cCCCCcCcceeEEEEecCCCcc
Q 031232          119 --SRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 --~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                        ...........+|.+..... ....+.++..+++|++++++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~  124 (155)
T 3u53_A           80 LNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQ  124 (155)
T ss_dssp             EEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHH
T ss_pred             eecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHH
Confidence              11222334445555554432 2333445568999999998754

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.87  E-value=4.3e-21  Score=137.11  Aligned_cols=110  Identities=17%  Similarity=0.124  Sum_probs=84.4

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceE--EEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLE--VLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~--vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .|+.+|++|+++.+          ++++  |||++|... +.|.||||++++|||+++||+||++||||+.+..... ++
T Consensus         7 ~p~~~v~~vi~~~~----------~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~   75 (139)
T 2yyh_A            7 TPLLATDVIIRLWD----------GENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKL-MG   75 (139)
T ss_dssp             CCEEEEEEEEEEEE----------TTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-EE
T ss_pred             CCeEEEEEEEEEEc----------CCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceE-EE
Confidence            57899999999864          3345  999998764 5699999999999999999999999999999887766 77


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .+.+...........++|.+.....  ..+.++..+++|++++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           76 VYSDPERDPRAHVVSVVWIGDAQGE--PKAGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             EECCTTSCTTSCEEEEEEEEEEESC--CCCCTTEEEEEEECTTSCC
T ss_pred             EECCCCcCCCceEEEEEEEEecCCc--cCCCCCcceEEEEEHHHCC
Confidence            6654333223356667888876432  2234456799999999987

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.87  E-value=5.7e-21  Score=139.77  Aligned_cols=112  Identities=15%  Similarity=0.073  Sum_probs=86.5

Q ss_pred             CCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        36 ~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      ..++.+|++|+++.             ++|||++|.+   .+.|.||||++++|||+.+||+||++||||+.+..... +
T Consensus        26 ~~~~~~v~~vi~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~   91 (157)
T 4dyw_A           26 EQPRVGCGAAIVRD-------------GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATL-L   91 (157)
T ss_dssp             CCCEEEEEEEEEET-------------TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEE-E
T ss_pred             CCceeEEEEEEEEC-------------CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcE-E
Confidence            36788888888873             2799999984   47899999999999999999999999999999887777 7


Q ss_pred             eEEEEeeCCCCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCCccC
Q 031232          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +.+.+...........++|.+....... .....+..+++|++++++...
T Consensus        92 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  141 (157)
T 4dyw_A           92 CVVDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQP  141 (157)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSS
T ss_pred             EEEEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHcccc
Confidence            7777666544455666777776543322 223345678999999998763

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.86  E-value=1.1e-21  Score=152.33  Aligned_cols=115  Identities=16%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .|.++|++||+..+         +++++|||++|..   .|.|.||||++++|||+++||+||++||||+.+..... ++
T Consensus        11 ~p~v~v~~vi~~~~---------~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-l~   80 (226)
T 2fb1_A           11 TFYLGIDCIIFGFN---------EGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VG   80 (226)
T ss_dssp             CEEEEEEEEEEEEE---------TTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EE
T ss_pred             CCeEEEEEEEEEEe---------CCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEE-EE
Confidence            56899999999875         4667999999876   37899999999999999999999999999999887777 77


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .+..............+|.+.+.......+..+..+++|++++++..+
T Consensus        81 ~~~~~~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~l  128 (226)
T 2fb1_A           81 AFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPAL  128 (226)
T ss_dssp             EECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCB
T ss_pred             EeCCCCcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhhhc
Confidence            776444333345556677776654322222334578999999998653

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.86  E-value=8e-21  Score=135.08  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCe---eeeeceeeeE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVT---GIVECELLGE  114 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~---~~~~~~~l~~  114 (163)
                      ..+|++|+++.+         +++++|||++++.. +.|.||||++++|||+++||+||++||||+.   +......++.
T Consensus         3 ~~~~~~vi~~~~---------~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   73 (138)
T 1ktg_A            3 VKAAGLVIYRKL---------AGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET   73 (138)
T ss_dssp             EEEEEEEEEEEE---------TTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE
T ss_pred             eEEEEEEEEEec---------CCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccce
Confidence            578889999874         34578999998743 5899999999999999999999999999995   4433111445


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+...  ......++|.+.........+..+..+++|++++++..
T Consensus        74 ~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~  117 (138)
T 1ktg_A           74 LFYEAK--GKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIK  117 (138)
T ss_dssp             EEEEET--TEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHH
T ss_pred             EEEEeC--CCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHH
Confidence            555443  33456778888776532233344568999999987654

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.85  E-value=1.5e-21  Score=153.00  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=88.2

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCC--CCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEI--DESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~--gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      .|.++|++||+...         +++++|||++|..   .|.|.||||++++  |||+++||+||++||||+.+....+ 
T Consensus        20 ~p~v~v~~vi~~~~---------~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~-   89 (240)
T 3gz5_A           20 AQLLTVDAVLFTYH---------DQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ-   89 (240)
T ss_dssp             -CEEEEEEEEEEEE---------TTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEE-
T ss_pred             CCccEEEEEEEEEe---------CCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceee-
Confidence            56799999999875         4668999999876   3789999999999  9999999999999999999888777 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      ++++.............++|.+.+.........++..+++|++++++.
T Consensus        90 l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~  137 (240)
T 3gz5_A           90 LCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVL  137 (240)
T ss_dssp             EEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHT
T ss_pred             EEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcc
Confidence            888777655555556667777766543222123445789999999875

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.85  E-value=8.4e-21  Score=137.17  Aligned_cols=109  Identities=19%  Similarity=0.201  Sum_probs=81.5

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCC---CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK---GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~---~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      ++.+|++|+.+.             ++|||+++...+   .|.||||++++|||+++||+||++||||+.+..... ++.
T Consensus         7 ~~~~v~~ii~~~-------------~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~   72 (153)
T 2b0v_A            7 PNVTVAAVIEQD-------------DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGI   72 (153)
T ss_dssp             CEEEEEEECEET-------------TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEE
T ss_pred             CCEEEEEEEeeC-------------CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceE-EEE
Confidence            466777766543             279999987644   799999999999999999999999999999987777 777


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+........+..++|.+....... ...+.+..+++|++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  119 (153)
T 2b0v_A           73 YHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRA  119 (153)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHH
T ss_pred             EEEeCCCCCcEEEEEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhh
Confidence            76665543334556678776654322 22344567999999988765

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.85  E-value=1.8e-20  Score=137.03  Aligned_cols=108  Identities=19%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE---
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW---  115 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~---  115 (163)
                      ..+|++|+++.+             +|||++++..+.|.||||++++|||+.+||+||++||||+.+..... ++.+   
T Consensus         6 ~~~v~~vi~~~~-------------~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~   71 (159)
T 3f6a_A            6 HFTVSVFIVCKD-------------KVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNP-IDINLKK   71 (159)
T ss_dssp             CEEEEEEEEETT-------------EEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCC-CCHHHHH
T ss_pred             eEEEEEEEEECC-------------EEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccc-ccccccc
Confidence            577788888632             79999998889999999999999999999999999999999877665 4321   


Q ss_pred             -----------------EEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          116 -----------------NFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 -----------------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                                       .+... .......++|.+............+..+++|++++++...
T Consensus        72 ~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  133 (159)
T 3f6a_A           72 SCDLSGEKLLINPIHTILGDVS-PNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNA  133 (159)
T ss_dssp             HHHHTTCEEECCCSEEEEECSS-SSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTC
T ss_pred             cccccccccccCccccccccCC-CCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhC
Confidence                             00000 1123455678887655433333455688999999998754

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.85  E-value=1.5e-21  Score=146.84  Aligned_cols=112  Identities=21%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             eEEEEEEEEEeecCcccccccCC----ceEEEEEEEc----------CCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEE----DLEVLVISSQ----------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVT  104 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~----~~~vLLv~r~----------~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~  104 (163)
                      .++|+++++...         ++    +++|||++|.          ..+.|.||||++++|||+++||+||++||||+.
T Consensus        27 ~~~v~~vv~~~~---------~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~   97 (187)
T 3i9x_A           27 GYTSDMILTTVK---------ELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLT   97 (187)
T ss_dssp             EEEEEEEEEEEE---------EETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCC
T ss_pred             cceEEEEEEEEc---------CCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCC
Confidence            499999999875         23    5789999993          247899999999999999999999999999999


Q ss_pred             eeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          105 GIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       105 ~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +..... ++.+..............+|.+.+....  ...+..+..+++|++++++..
T Consensus        98 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  154 (187)
T 3i9x_A           98 DIPLIP-FGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALE  154 (187)
T ss_dssp             SCCCEE-EEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTT
T ss_pred             CcceEE-EEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHccc
Confidence            877777 7776554433333344445554443221  112334557899999998764

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.85  E-value=1.4e-20  Score=135.98  Aligned_cols=114  Identities=21%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee-EEEE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EWNF  117 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~-~~~~  117 (163)
                      ..+|+++++...         +++++|||++|...+.|.||||++++|||+++||+||++||||+.+......+. .+.+
T Consensus         5 ~~~v~vvi~~~~---------~~~~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   75 (149)
T 3son_A            5 PFQVLVIPFIKT---------EANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASI   75 (149)
T ss_dssp             CCEEEEEEEEEC---------SSSEEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEE
T ss_pred             ceEEEEEEEEec---------CCCeEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecc
Confidence            457778888764         466799999998889999999999999999999999999999999765321122 1221


Q ss_pred             ee---C-CCCceEEEEEEEEEeccc-cCCCCcCcceeEEEEecCCCccC
Q 031232          118 KS---R-AHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       118 ~~---~-~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..   . ........++|.+..... .......+..+++|++++++...
T Consensus        76 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  124 (149)
T 3son_A           76 PNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQL  124 (149)
T ss_dssp             EGGGTCSSSCSEEEEEEEEEECTTTGGGCCCCTTEEEEEEECHHHHHHH
T ss_pred             cceeeccCCceEeEEEEEEEEcCCCCCcccCCCceeeEEEeCHHHHHHH
Confidence            11   1 122345667888877631 12222355689999999987543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.84  E-value=1.6e-20  Score=131.58  Aligned_cols=104  Identities=25%  Similarity=0.260  Sum_probs=78.7

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~  119 (163)
                      .+|++|+++.+            ++|||++|+. |.|.||||++++|||+.+||.||++||||+.+..... ++.+.+..
T Consensus         3 ~~~~~vi~~~~------------~~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~   68 (126)
T 1vcd_A            3 LGAGGVVFNAK------------REVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYVN   68 (126)
T ss_dssp             EEEEEEEECTT------------SCEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEEC
T ss_pred             eEEEEEEEcCC------------CEEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccE-EeEEEEec
Confidence            56777887642            3799999876 8899999999999999999999999999999987777 77776655


Q ss_pred             CCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          120 RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       120 ~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .  ......++|.+...... ..++.+..+++|++++++..
T Consensus        69 ~--~~~~~~~~~~~~~~~~~-~~~~~e~~~~~w~~~~el~~  106 (126)
T 1vcd_A           69 P--KGVEREVHWFLMRGEGA-PRLEEGMTGAGWFSPEEARA  106 (126)
T ss_dssp             T--TSCEEEEEEEEEEEESC-CCCCTTCCEEEEECHHHHHH
T ss_pred             C--CceEEEEEEEEEEcCCC-CCCCcceeeeEEcCHHHHHH
Confidence            3  22345566766554332 33344567999999987654

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.84  E-value=3.3e-20  Score=134.86  Aligned_cols=112  Identities=24%  Similarity=0.195  Sum_probs=81.9

Q ss_pred             ccCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           33 RYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        33 ~~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      ++......++++++++.            +++|||+++.+   .+.|.||||++++|||+++||+||++||||+.+....
T Consensus        14 ~~~~~~~~~v~~~i~~~------------~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~   81 (156)
T 3gg6_A           14 RLRKNVCYVVLAVFLSE------------QDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPET   81 (156)
T ss_dssp             CCCTTCEEEEEEECBCT------------TSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEE
T ss_pred             ccCCceEEEEEEEEEeC------------CCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeee
Confidence            45555666777777653            34899999887   4789999999999999999999999999999998877


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccccCC---CCcCcceeEEEEecCCCccCC
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE---WPEKNVRSRKWVCTFMPVTCF  162 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~e~~~~~W~~~~e~~~~~  162 (163)
                      . ++.+...     ..+..++|.+........   .++.+..+++|++++++...+
T Consensus        82 ~-~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  131 (156)
T 3gg6_A           82 L-LSVEERG-----PSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPL  131 (156)
T ss_dssp             E-EEEEESS-----TTEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSB
T ss_pred             E-EEEEcCC-----CCEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccc
Confidence            7 7665421     124556777765432211   233456799999999987543

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.84  E-value=1.7e-20  Score=135.92  Aligned_cols=106  Identities=20%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      ++.+|++|+.+.             ++|||++|..  .+.|.||||++++|||+++||+||++||||+.+..... ++.+
T Consensus         4 p~~~v~~ii~~~-------------~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~   69 (153)
T 3shd_A            4 PHVTVACVVHAE-------------GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHF-IRMH   69 (153)
T ss_dssp             CEEEEEEEEEET-------------TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEE-EEEE
T ss_pred             CceEEEEEEEeC-------------CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcE-EEEE
Confidence            567777776653             2799999853  35799999999999999999999999999999887776 7777


Q ss_pred             EEeeCCCCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCC
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMP  158 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~  158 (163)
                      .+.... ......++|.+....... ...+.+..+++|++++++
T Consensus        70 ~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           70 QWIAPD-KTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             EECCTT-SCCEEEEEEEEECSSCCCCCCCSTTCCEEEEECHHHH
T ss_pred             EEecCC-CceEEEEEEEEEccccCcCCCCcccceeeEEecHHHh
Confidence            665543 334566788887765432 223445688999999887

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.83  E-value=5.4e-20  Score=140.59  Aligned_cols=110  Identities=10%  Similarity=0.043  Sum_probs=81.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      .++.+|++++++.             ++|||+++...|.|.||||++++|||+.+||+||++||||+.+..... ++.+.
T Consensus        66 ~~~~~v~~vv~~~-------------~~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~-l~~~~  131 (205)
T 3q1p_A           66 TPKVDIRAVVFQN-------------EKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL-LAIFD  131 (205)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEE
T ss_pred             CCcceEEEEEEEC-------------CEEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceE-EEEEe
Confidence            5678888888863             279999988778999999999999999999999999999999987777 77665


Q ss_pred             EeeC---CCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          117 FKSR---AHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ....   ........++|.+...... ..+..+..+++|++++++...
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~l  178 (205)
T 3q1p_A          132 KEKHQPSPSATHVYKIFIGCEIIGGE-KKTSIETEEVEFFGENELPNL  178 (205)
T ss_dssp             HHHHSCCCCSSCEEEEEEEEEEEEEC-CCCCTTSCCEEEECTTSCCCB
T ss_pred             ccccCCCCCCceEEEEEEEEEecCCc-cCCCCcceEEEEEeHHHhhhc
Confidence            4321   1223455677777665432 223355689999999998654

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.82  E-value=1.4e-19  Score=135.05  Aligned_cols=95  Identities=18%  Similarity=0.046  Sum_probs=73.8

Q ss_pred             eEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        63 ~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      ++|||++|..   .+.|.||||++++|||+++||+||++||||+.+..... ++.+.+...........++|.+......
T Consensus        36 ~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~  114 (176)
T 3q93_A           36 QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQIVFEFVGEPELMDVHVFCTDSIQGT  114 (176)
T ss_dssp             SEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEE-EEEEEEEETTCSCEEEEEEEEESCEESC
T ss_pred             CEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEE-EEEEEEEcCCCCcEEEEEEEEEECCCCC
Confidence            3799998865   37899999999999999999999999999999987777 8887776665445566677877543322


Q ss_pred             CCCCcCcceeEEEEecCCCcc
Q 031232          140 AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      . . ..+..+.+|++++++..
T Consensus       115 ~-~-~~e~~~~~W~~~~el~~  133 (176)
T 3q93_A          115 P-V-ESDEMRPCWFQLDQIPF  133 (176)
T ss_dssp             C-C-CCSSEEEEEEETTCCCG
T ss_pred             c-C-CCcceeeEEeeHHHccc
Confidence            1 1 23346789999999764

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.82  E-value=7.8e-20  Score=132.97  Aligned_cols=111  Identities=18%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeee--eecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~--~~~~~  111 (163)
                      .++.+|++|+++.            +++|||++|..   .+.|.||||++++|||+++||+||++||||+.+.  .... 
T Consensus        16 ~~~~~v~~vi~~~------------~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~-   82 (160)
T 1rya_A           16 TPLVSLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-   82 (160)
T ss_dssp             SCEEEEEEEEECT------------TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEE-
T ss_pred             CcEEEEEEEEEcC------------CCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceE-
Confidence            5678888888853            23699999876   4789999999999999999999999999999964  3344 


Q ss_pred             eeEEEEeeCCC------CceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAH------NTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+.....      ......++|.+.........+..+..+++|++++++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~  137 (160)
T 1rya_A           83 YGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA  137 (160)
T ss_dssp             EEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHH
T ss_pred             EEEEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhh
Confidence            66665443321      12556777887765432222344567999999987653

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.82  E-value=5.4e-20  Score=135.07  Aligned_cols=110  Identities=19%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      ++.++.+++++.           +.++|||++|...   |.|.||||++++|||+++||+||++||||+.+..... ++.
T Consensus         9 ~~~~v~~vi~~~-----------~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~   76 (161)
T 3exq_A            9 VELVTMVMVTDP-----------ETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTF-CGT   76 (161)
T ss_dssp             EEEEEEEEEBCT-----------TTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEE-EEE
T ss_pred             ceEEEEEEEEeC-----------CCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcE-EEE
Confidence            355666666543           3357999988753   5688999999999999999999999999999887777 887


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +.+...........++|.+.......  ...+..+++|++++++...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           77 CEWFDDDRQHRKLGLLYRASNFTGTL--KASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             EEEECSSCSSEEEEEEEEECCEESCC--CGGGTTTEEEECGGGCCTT
T ss_pred             EecccCCCCeEEEEEEEEEeccCCcc--CCCccceEEEeeHHHhhhC
Confidence            77766444556667777776543321  2334468999999998753

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.82  E-value=1.7e-19  Score=131.02  Aligned_cols=108  Identities=16%  Similarity=0.069  Sum_probs=80.2

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC-------CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-------~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      +.++++|+++.            +++|||++|..       .+.|.||||++++|||+++||+||++||||+.+..... 
T Consensus        13 ~~~~~~vi~~~------------~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-   79 (159)
T 1sjy_A           13 LRAAGVVLLNE------------RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-   79 (159)
T ss_dssp             EEEEEEEEBCT------------TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-
T ss_pred             EEeEEEEEEeC------------CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEE-
Confidence            56666666643            24699999874       27899999999999999999999999999999887777 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEecccc-CCC-CcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQL-AEW-PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~-~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+..... .....++|.+...... ... ...+..+++|++++++..
T Consensus        80 l~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  129 (159)
T 1sjy_A           80 LGAYLGRFPDG-VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQ  129 (159)
T ss_dssp             EEEEEEECTTS-CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHH
T ss_pred             EEEEecccCCC-ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHH
Confidence            77766543322 4567778888765433 222 344567999999987653

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.82  E-value=9.3e-20  Score=132.22  Aligned_cols=108  Identities=12%  Similarity=0.067  Sum_probs=78.1

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      .++.++++|+++.             ++|||++|  .+.|.||||++++|||+++||+||++||||+.+..... ++.+.
T Consensus        17 ~~~~~~~~ii~~~-------------~~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~   80 (154)
T 2pqv_A           17 VFGVRATALIVQN-------------HKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQL-AFVVE   80 (154)
T ss_dssp             EEEEEEEECCEET-------------TEEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEEE
T ss_pred             eEeEEEEEEEEEC-------------CEEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceE-EEEEe
Confidence            4467777888753             26999988  67899999999999999999999999999999887666 66554


Q ss_pred             EeeCCCCc--eEEEEEEEEEeccccCC--CCcCcceeEEEEecCCCcc
Q 031232          117 FKSRAHNT--DYQGYMFPLLVQDQLAE--WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 ~~~~~~~~--~~~~~~f~~~~~~~~~~--~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.......  ....++|.+........  .++.+..+++|++++++..
T Consensus        81 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  128 (154)
T 2pqv_A           81 NRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQN  128 (154)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGG
T ss_pred             eeecCCCCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhh
Confidence            33322222  33456777766543221  2233457899999999865

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.82  E-value=1e-19  Score=145.00  Aligned_cols=115  Identities=18%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee--ecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~--~~~~  111 (163)
                      .|.++|++||++..++       .+..+|||++|...   |.|.||||++++|||+++||+||++||||+.+..  ... 
T Consensus        37 ~p~v~v~~vv~~~~~~-------~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~-  108 (273)
T 2fml_A           37 KPSLTVDMVLLCYNKE-------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ-  108 (273)
T ss_dssp             CCEEEEEEEEEEEETT-------TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE-
T ss_pred             CCceEEEEEEEEEcCC-------CCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE-
Confidence            6789999999987511       12679999999763   7899999999999999999999999999987543  333 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.........+...++|.+.+.... ..+..+..+++|++++++..
T Consensus       109 l~~~~~~~r~~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A          109 LHSFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETT
T ss_pred             EEEEcCCCCCCCceEEEEEEEEEeCCCC-CCCCcceeeEEEEEhhHhhh
Confidence            5555433333333566677877765433 34445568999999997543

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.82  E-value=1.7e-19  Score=130.90  Aligned_cols=109  Identities=19%  Similarity=0.096  Sum_probs=81.1

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      ..+.+|++|+++.            +++|||++|...     +.|.||||++++|||+.+||+||++||||+.+..... 
T Consensus         6 ~~~~~v~~vi~~~------------~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-   72 (153)
T 3grn_A            6 PYIISVYALIRNE------------KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDI-   72 (153)
T ss_dssp             CEEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSE-
T ss_pred             ceEEEEEEEEEcC------------CCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceE-
Confidence            3467777777753            247999998763     7899999999999999999999999999999887777 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ++.+.+...  ......++|.+...... ..+..+..+++|++++++...
T Consensus        73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           73 AGQVNFELT--EKKVIAIVFDGGYVVAD-VKLSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             EEEEEEECS--SCEEEEEEEEEEECCCC-CCCCTTEEEEEEECHHHHTTC
T ss_pred             EEEEEEecC--CceEEEEEEEEEecCCc-EecCCCcceEEEEEHHHhhhc
Confidence            777665543  23455667776654332 222345678999999887653

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.82  E-value=1.9e-19  Score=132.79  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=76.9

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      ..+..|++|+++.             ++|||++|.. .+.|.||||++++|||+++||+||++||||+.+..... ++.+
T Consensus        21 ~~~~~v~~ii~~~-------------~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~   86 (171)
T 3id9_A           21 IMQVRVTGILIED-------------EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKL-LYVC   86 (171)
T ss_dssp             -CEEEEEEEEEET-------------TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEEE
T ss_pred             ceEEEEEEEEEEC-------------CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceE-EEEE
Confidence            4567777887753             2799999876 58899999999999999999999999999999887776 7666


Q ss_pred             EEeeCCCCceEEEEEEEEEeccccCCC-----CcCcceeEEEEecCCCccC
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQLAEW-----PEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~~e~~~~~W~~~~e~~~~  161 (163)
                      .+....  .....++|.+.........     ...+..+++|++++++...
T Consensus        87 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  135 (171)
T 3id9_A           87 DKPDAS--PSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYY  135 (171)
T ss_dssp             EETTSS--SCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGG
T ss_pred             cccCCC--CcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC
Confidence            554332  2234445655544322111     2244578999999998753

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.81  E-value=2.5e-19  Score=136.95  Aligned_cols=109  Identities=10%  Similarity=0.072  Sum_probs=81.8

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      .++++|++++++.             ++|||+++. .+.|.||||++++|||+.+||+||++||||+.+..... ++.+.
T Consensus        68 ~~~~~v~~vv~~~-------------~~vLLvrr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~  132 (206)
T 3o8s_A           68 TPKLDTRAAIFQE-------------DKILLVQEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRV-VAILD  132 (206)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEE-EEEEE
T ss_pred             CCCccEEEEEEEC-------------CEEEEEEec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEe
Confidence            5678888888863             279999988 78999999999999999999999999999999988777 77665


Q ss_pred             EeeCC---CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          117 FKSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +....   .......++|.+...... ..+..+..+++|++++++...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~l  179 (206)
T 3o8s_A          133 KHKNNPAKSAHRVTKVFILCRLLGGE-FQPNSETVASGFFSLDDLPPL  179 (206)
T ss_dssp             HHHHCC-----CEEEEEEEEEEEEEC-CCCCSSCSEEEEECTTSCCCB
T ss_pred             ccccCCCCCCceEEEEEEEEEecCCe-ecCCCCceEEEEEeHHHhhhc
Confidence            32211   122455667777665432 223355689999999998654

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.81  E-value=6.2e-20  Score=139.38  Aligned_cols=112  Identities=15%  Similarity=0.167  Sum_probs=73.8

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      .+++.|++++++.           ++++|||++++.  .+.|.||||++++|||+++||+||++||||+.+..... ++.
T Consensus        24 ~~~v~v~~~v~~~-----------~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l-~~~   91 (199)
T 3h95_A           24 SHQVGVAGAVFDE-----------STRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSV-LSI   91 (199)
T ss_dssp             --CCEEEEEEEET-----------TTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EEE
T ss_pred             cccceEEEEEEeC-----------CCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceE-EEE
Confidence            5677888888864           345899999877  48899999999999999999999999999999886665 553


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccc--cCCCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ...............+|.+.+...  .....+.+..+++|++++++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  139 (199)
T 3h95_A           92 RQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK  139 (199)
T ss_dssp             EECC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHH
T ss_pred             EeeecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhh
Confidence            221111111122233444443321  2222344568999999987654

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.81  E-value=2.4e-19  Score=128.24  Aligned_cols=104  Identities=22%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC------CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~------~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      ..++++|+++.             ++|||++|..      .|.|.||||++++|||+++||.||++||||+.+..... +
T Consensus         6 ~~~v~~vi~~~-------------~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-~   71 (140)
T 3gwy_A            6 IEVVAAVIRLG-------------EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEK-L   71 (140)
T ss_dssp             EEEEEEEEEET-------------TEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-E
T ss_pred             EEEEEEEEEeC-------------CEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceE-E
Confidence            45666666652             2699999874      35799999999999999999999999999999988777 7


Q ss_pred             eEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+.+...  ......++|.+.......  ...+..+++|++++++..
T Consensus        72 ~~~~~~~~--~~~~~~~~f~~~~~~~~~--~~~E~~~~~W~~~~el~~  115 (140)
T 3gwy_A           72 LTVHHTYP--DFEITMHAFLCHPVGQRY--VLKEHIAAQWLSTREMAI  115 (140)
T ss_dssp             EEEECCCS--SCCEEEEEEEEEECCSCC--CCCSSCEEEEECHHHHTT
T ss_pred             EEEEEEeC--CceEEEEEEEEEecCCcc--cccccceeEeccHHHHhh
Confidence            77665443  234566788887664322  123457899999988654

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.81  E-value=6.7e-20  Score=139.24  Aligned_cols=109  Identities=30%  Similarity=0.547  Sum_probs=79.1

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      .++..+++|+++.          +++++|||+++.. .+.|.||||++++|||+++||+||++||||+.+..... ++.+
T Consensus        38 ~~~~~~~~vi~~~----------~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~-l~~~  106 (194)
T 2fvv_A           38 GYKKRAACLCFRS----------ESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL-VGIF  106 (194)
T ss_dssp             SCEEEEEEEEESS----------TTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEE
T ss_pred             CccccEEEEEEEE----------CCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceE-EEEE
Confidence            6678888888864          2456899999865 47899999999999999999999999999999887777 7776


Q ss_pred             EEeeCCCCceEEEEEEEEEeccccCCCCcC--cceeEEEEecCCCcc
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQLAEWPEK--NVRSRKWVCTFMPVT  160 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--e~~~~~W~~~~e~~~  160 (163)
                      .+..  ..  ...++|.+.+.......+..  +..+++|++++++..
T Consensus       107 ~~~~--~~--~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          107 ENQE--RK--HRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             EETT--TT--EEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHH
T ss_pred             EcCC--Cc--eEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHH
Confidence            6422  12  23456666544322222211  125899999988654

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.81  E-value=1.6e-19  Score=136.22  Aligned_cols=95  Identities=19%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCc---eEEEEEEEEEeccccC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLA  140 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~  140 (163)
                      +|||++|...|.|.+|||++++|||+++||+||++||||+.+..... ++.+.+.......   .+..++|.+...... 
T Consensus        16 ~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~-   93 (188)
T 3fk9_A           16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPEL-KGIFSMVIFDEGKIVSEWMLFTFKATEHEGE-   93 (188)
T ss_dssp             EEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEE-EEEEEEEEEETTEEEEEEEEEEEEESCEESC-
T ss_pred             EEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceE-EEEEEEEecCCCcceEEEEEEEEEEECCCCC-
Confidence            79999988789999999999999999999999999999999887666 7776665543332   225566766543322 


Q ss_pred             CCCcCcceeEEEEecCCCcc
Q 031232          141 EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       141 ~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..+..+..+++|++++++..
T Consensus        94 ~~~~~e~~~~~W~~~~el~~  113 (188)
T 3fk9_A           94 MLKQSPEGKLEWKKKDEVLE  113 (188)
T ss_dssp             CCSEETTEEEEEEEGGGGGG
T ss_pred             CcCCCCCEeEEEEEHHHhhh
Confidence            22333446899999999764

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.81  E-value=5.6e-19  Score=133.06  Aligned_cols=104  Identities=20%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .++.+|++|+++.             ++|||+++..   .+.|.||||++++|||+++||+||++||||+.+..... ++
T Consensus        38 ~~~~~v~~ii~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~  103 (189)
T 3cng_A           38 NPKVIVGCIPEWE-------------NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIREL-YA  103 (189)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEE-EE
T ss_pred             CCceEEEEEEEeC-------------CEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCcccccee-EE
Confidence            5677888888763             2799999876   47899999999999999999999999999999887665 66


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .+.+..    .....++|.+...... ..+..+..+++|++++++.
T Consensus       104 ~~~~~~----~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          104 VYSLPH----ISQVYMLFRAKLLDLD-FFPGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             EEEEGG----GTEEEEEEEEEECCSC-CCCCTTEEEEEEECTTTCC
T ss_pred             EEecCC----CcEEEEEEEEEeCCCc-cCCCccceeEEEECHHHcC
Confidence            554432    2345677877765432 2334556899999999987

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.81  E-value=7.8e-19  Score=126.43  Aligned_cols=93  Identities=19%  Similarity=0.095  Sum_probs=71.6

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||++|...    |.|.||||++++|||+.+||.||++||||+.+..... ++.+.+....  .....++|.+.....
T Consensus        33 ~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~  109 (153)
T 3ees_A           33 GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGEL-KLACTHSYGD--VGILILFYEILYWKG  109 (153)
T ss_dssp             TEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCE-EEEEEEEETT--EEEEEEEEEECEEES
T ss_pred             CEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCce-EEEEEEecCC--CeEEEEEEEEEECCC
Confidence            37999998764    7899999999999999999999999999999887776 7766555442  334557777765443


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .  ....+..+++|++++++..
T Consensus       110 ~--~~~~e~~~~~W~~~~el~~  129 (153)
T 3ees_A          110 E--PRAKHHMMLEWIHPEELKH  129 (153)
T ss_dssp             C--CCCSSSSEEEEECGGGGGG
T ss_pred             C--cCCCccceEEEecHHHhhh
Confidence            2  2233457899999998765

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.81  E-value=4e-19  Score=131.17  Aligned_cols=112  Identities=23%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      .++.+|++++++.            +++|||+++...+.|.+|||++++|||+++||.||++||||+.+..... ++.+.
T Consensus         6 ~~~~~v~~~i~~~------------~~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~   72 (164)
T 2kdv_A            6 GYRPNVGIVICNR------------QGQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI-LASTR   72 (164)
T ss_dssp             SEEEEEEEEEECT------------TSEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEECS
T ss_pred             CCCcEEEEEEEcc------------CCEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEE-EEEec
Confidence            4577888888864            2479999998778999999999999999999999999999999876555 65532


Q ss_pred             ----EeeCCC---------CceEEEEEEEEEeccccC---CC--CcCcceeEEEEecCCCccC
Q 031232          117 ----FKSRAH---------NTDYQGYMFPLLVQDQLA---EW--PEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       117 ----~~~~~~---------~~~~~~~~f~~~~~~~~~---~~--~~~e~~~~~W~~~~e~~~~  161 (163)
                          |.....         ......++|.+.......   ..  ++.+..+++|+++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A           73 NWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             SCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGG
T ss_pred             ceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhh
Confidence                222111         112356778877653211   11  2345689999999998764

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.81  E-value=1.5e-19  Score=129.66  Aligned_cols=110  Identities=25%  Similarity=0.360  Sum_probs=77.4

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN  116 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~  116 (163)
                      ..+..+++|+++.           ++++|||++|. .|.|.||||++++|||+++||+||++||||+.+..... ++.+.
T Consensus        16 ~~~~~~~~vi~~~-----------~~~~vLl~~r~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~   82 (148)
T 2azw_A           16 QTRYAAYIIVSKP-----------ENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEAD   82 (148)
T ss_dssp             EECCEEEEECEEG-----------GGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEE
T ss_pred             eeeeEEEEEEECC-----------CCCeEEEEEcC-CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeE-EEEEE
Confidence            3456777777764           23579999874 58999999999999999999999999999999887766 66543


Q ss_pred             -E-eeCCCCc--eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          117 -F-KSRAHNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 -~-~~~~~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                       + .......  ....++|.+....... .+..+..+++|++++++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~  129 (148)
T 2azw_A           83 EYFYSNHRQTAYYNPGYFYVANTWRQLS-EPLERTNTLHWVAPEEAVR  129 (148)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEECS-SCC-CCSEEEEECHHHHHH
T ss_pred             EEEcCCCCCcceEEEEEEEEEEcCcCCc-CCCCceeeEEEeeHHHHHh
Confidence             1 1111211  3446677776554322 2233456899999988754

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=3.3e-19  Score=135.06  Aligned_cols=114  Identities=11%  Similarity=0.040  Sum_probs=72.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCe-eeeeceeeeEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-GIVECELLGEW  115 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~-~~~~~~~l~~~  115 (163)
                      ....++++++++.           ++.+|||++++..|.|.||||++++|||+.+||+||++||||+. +.........+
T Consensus        43 ~~h~~~~~vv~~~-----------~~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~  111 (197)
T 3fcm_A           43 IAHLTSSAFAVNK-----------ERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFAL  111 (197)
T ss_dssp             SEEEEEEEEEECT-----------TSCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEE
T ss_pred             CccEEEEEEEEEC-----------CCCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEE
Confidence            3456777777763           34589999998889999999999999999999999999999998 54322101111


Q ss_pred             EEee-CC--------CCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCCccC
Q 031232          116 NFKS-RA--------HNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 ~~~~-~~--------~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .+.. ..        ....+...+|.+....... ..+..+..+++|++++++...
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  167 (197)
T 3fcm_A          112 DVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKY  167 (197)
T ss_dssp             EEEEECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHH
T ss_pred             EEeeecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhh
Confidence            1111 11        1112233555555553322 223345688999999987643

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.80  E-value=6.4e-19  Score=130.35  Aligned_cols=85  Identities=22%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP  143 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  143 (163)
                      ++||++++ .|.|.||||++++|||+++||+||++||||+.+..... ++.+.+..      ...++|.+.....  ..+
T Consensus        28 ~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~------~~~~~f~~~~~~~--~~~   97 (163)
T 3f13_A           28 GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLY-LFDHITPF------NAHKVYLCIAQGQ--PKP   97 (163)
T ss_dssp             EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEE-EEEEECSS------EEEEEEEEEC-CC--CCC
T ss_pred             EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEE-EEEEecCC------eEEEEEEEEECCc--Ccc
Confidence            69999876 58899999999999999999999999999999887776 66654322      4456677765433  223


Q ss_pred             cCcceeEEEEecCCC
Q 031232          144 EKNVRSRKWVCTFMP  158 (163)
Q Consensus       144 ~~e~~~~~W~~~~e~  158 (163)
                      .++..+++|++.+.+
T Consensus        98 ~~E~~~~~W~~~~~~  112 (163)
T 3f13_A           98 QNEIERIALVSSPDT  112 (163)
T ss_dssp             CTTCCEEEEESSTTC
T ss_pred             CCCceEEEEECcccc
Confidence            345689999995443

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.79  E-value=5.9e-19  Score=126.53  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee--ceeeeEE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CELLGEW  115 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~--~~~l~~~  115 (163)
                      ..+|++++++.           +++++||++|+. .|.|.||||++++|||+.+||+||++||||+.+...  .. ++..
T Consensus         9 ~~~v~~~i~~~-----------~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~   76 (150)
T 2o1c_A            9 PVSILVVIYAQ-----------DTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTL-IDCQ   76 (150)
T ss_dssp             SEEEEEEEEET-----------TTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCE-EEEE
T ss_pred             ceEEEEEEEeC-----------CCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeE-Eeee
Confidence            46788888864           234799999876 588999999999999999999999999999997653  22 3322


Q ss_pred             E---E--------eeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          116 N---F--------KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       116 ~---~--------~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .   |        ...........++|.+........ ...+..+++|++++++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~~~el~~  131 (150)
T 2o1c_A           77 RTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQI-VFTEHLAYKWLDAPAAAA  131 (150)
T ss_dssp             EEEEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCC-CCSSSSCEEEEEHHHHHH
T ss_pred             ceeeeeeecccccccCCCCcceEEEEEEEEcCCCCCc-ChhHhhccEeecHHHHHh
Confidence            1   1        011112346677888876643322 224567999999988654

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.79  E-value=1.5e-18  Score=127.28  Aligned_cols=97  Identities=18%  Similarity=0.026  Sum_probs=64.7

Q ss_pred             eEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE------EEeeCCCCc---eEEE
Q 031232           63 LEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW------NFKSRAHNT---DYQG  128 (163)
Q Consensus        63 ~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~------~~~~~~~~~---~~~~  128 (163)
                      ++|||++|...     +.|.||||++++|||+++||+||++||||+.+..... ++..      .+.......   ....
T Consensus        39 ~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (165)
T 3oga_A           39 GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDI-TPWTFRDDIRIKTYADGRQEEIYMIY  117 (165)
T ss_dssp             TEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEE-EEEEEEEEEEEEEC--CCEEEEEEEE
T ss_pred             CEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccce-eeeeeecceeeEecCCCCceeEEEEE
Confidence            37999988743     6899999999999999999999999999999876554 3211      112221111   1233


Q ss_pred             EEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          129 YMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       129 ~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ++|.+...... ..+..+..+++|++++++...
T Consensus       118 ~~~~~~~~~~~-~~~~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          118 LIFDCVSANRD-ICINDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             EEEEEEESCCC-CCCCTTEEEEEEECGGGGGGS
T ss_pred             EEEEeeccCCC-ccCCchheeeEEccHHHHhhC
Confidence            45555444322 222345679999999998653

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.79  E-value=1.4e-18  Score=125.95  Aligned_cols=112  Identities=18%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCC--CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~--~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      .++.++++|+++.+         .++..|||++|...+  .|.||||++++|||+++||+||++||||+.+..... ++.
T Consensus         6 ~~~~~~~~ii~~~~---------~~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~   75 (155)
T 2b06_A            6 LTILTNICLIEDLE---------TQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGI   75 (155)
T ss_dssp             CEEEEEEEEEEETT---------TTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEE
T ss_pred             CcEEEEEEEEEECC---------CCeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcE-EEE
Confidence            34677778877642         133447777765432  389999999999999999999999999999887666 776


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      +.+... .......++|.+.......  ...+..+++|++++++...
T Consensus        76 ~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~~el~~~  119 (155)
T 2b06_A           76 KNWPLD-TGGRYIVICYKATEFSGTL--QSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEEECT-TSCEEEEEEEEECEEEECC--CCBTTBEEEEEEGGGGGGS
T ss_pred             EeeccC-CCceEEEEEEEEEecCCCC--CCCcceeeEEeeHHHhhhC
Confidence            665542 2345566777775443221  1234578999999988653

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.79  E-value=3.8e-19  Score=129.72  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=70.3

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEE---
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN---  116 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~---  116 (163)
                      .+|++|+++.             ++|||++++..|.|.||||++++|||+++||+||++||||+++..... ++.+.   
T Consensus         2 ~~~~~vi~~~-------------~~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~   67 (156)
T 1k2e_A            2 IVTSGVLVEN-------------GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF-TYGIIDEN   67 (156)
T ss_dssp             EEEEEECEET-------------TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC-CCCCBSSS
T ss_pred             eEEEEEEEEC-------------CEEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc-eeeecccc
Confidence            5677888763             269999988778999999999999999999999999999999876554 32111   


Q ss_pred             -------------EeeCCCCc-eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          117 -------------FKSRAHNT-DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 -------------~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                                   +....... .....+|.+....       .+..+++|++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-------~e~~~~~W~~~~el~~  118 (156)
T 1k2e_A           68 AVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVG-------GDLKNGEWIDVREIDR  118 (156)
T ss_dssp             EEECCCCSEEEEEEEECSSCEEEEEEEEEEEEEEE-------ECCCSCEEEEGGGGGG
T ss_pred             cccccccceeeeeeecCCCCceEEEEEEEEEEecC-------CcEeeeEEeCHHHHhc
Confidence                         01111111 2233456655321       2356899999999864

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.79  E-value=1.6e-18  Score=123.91  Aligned_cols=95  Identities=20%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece-eeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++|||++|...    |.|.||||++++||++.+||.||++||||+.+..... .++.+.+..  .......++|.+....
T Consensus        20 ~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   97 (144)
T 3r03_A           20 GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSY--DTFHLLMPLYACRSWR   97 (144)
T ss_dssp             SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEEC--SSSEEEEEEEEECCCB
T ss_pred             CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccC--CCeEEEEEEEEEEecC
Confidence            46999998753    7899999999999999999999999999999876543 133333332  3345666778776554


Q ss_pred             ccCCCCcCcceeEEEEecCCCccC
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  ....+..+++|++++++...
T Consensus        98 ~~--~~~~e~~~~~W~~~~el~~~  119 (144)
T 3r03_A           98 GR--ATAREGQTLAWVRAERLREY  119 (144)
T ss_dssp             SC--CCCCSSCEEEEECGGGGGGS
T ss_pred             Cc--cCCCCcceEEEEeHHHhccC
Confidence            32  12334578999999987653

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.78  E-value=7e-19  Score=126.99  Aligned_cols=107  Identities=20%  Similarity=0.084  Sum_probs=68.1

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      +.+|++++++.            +++|||+++++.    +.|.||||++|+|||+++||+||++||||+.+..... ++.
T Consensus         5 ~~~v~vi~~~~------------~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~   71 (145)
T 2w4e_A            5 PRAVFILPVTA------------QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVP-LPG   71 (145)
T ss_dssp             CEEEEEEEEET------------TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEE-CCC
T ss_pred             CCEEEEEEEcC------------CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEE-Eec
Confidence            34667777653            236888876432    3699999999999999999999999999999876665 654


Q ss_pred             EEEeeCCCCceEEEEEEEEE-eccccCCCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLL-VQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.. .... .....++|.+. ........++.+..+++|++++++..
T Consensus        72 ~~~-~~~~-~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  116 (145)
T 2w4e_A           72 FYP-QPSI-SGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYR  116 (145)
T ss_dssp             BBS-CTTT-CCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHH
T ss_pred             CcC-CCCc-cCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHH
Confidence            322 1111 12234555554 22221222344557999999987653

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.78  E-value=1.7e-18  Score=126.11  Aligned_cols=95  Identities=18%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece-eeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++|||++|...    |.|.||||++++||++.+||.||++||||+.+..... .++.+.+..  .......++|.+....
T Consensus        41 ~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  118 (158)
T 3hhj_A           41 NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGY--ETFHLLMPLYFCSHYK  118 (158)
T ss_dssp             SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEEC--SSCEEEEEEEEESCCB
T ss_pred             CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeecc--CCcEEEEEEEEEEECC
Confidence            47999998753    6899999999999999999999999999999876543 133333333  2335566777775543


Q ss_pred             ccCCCCcCcceeEEEEecCCCccC
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  ....+..+++|++++++...
T Consensus       119 ~~--~~~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A          119 GV--AQGREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             SC--CCCTTSCEEEEEEGGGGGGS
T ss_pred             Cc--cCCccccceEEEcHHHHhhC
Confidence            31  22334578999999987653

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.78  E-value=6.8e-20  Score=131.70  Aligned_cols=107  Identities=15%  Similarity=0.196  Sum_probs=71.0

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS  119 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~  119 (163)
                      .++++++++.           +.++|||+++...+.|.||||++++|||+++||+||++||||+.+..... +..+....
T Consensus         5 ~~~~~~i~~~-----------~~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~   72 (146)
T 2jvb_A            5 PVRGAAIFNE-----------NLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID-DNQFIERN   72 (146)
T ss_dssp             CCEEEEEBCT-----------TSSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSC-SSCEEEEE
T ss_pred             EEEEEEEEeC-----------CCCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcc-cccccccc
Confidence            4566777753           23589999988778999999999999999999999999999999765433 33332221


Q ss_pred             CCCCceEEEEEEEEE-eccc--cCCCCcCcceeEEEEecCCCccC
Q 031232          120 RAHNTDYQGYMFPLL-VQDQ--LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       120 ~~~~~~~~~~~f~~~-~~~~--~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      . .+..  .++|.+. ....  ....++.+..+++|++++++...
T Consensus        73 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  114 (146)
T 2jvb_A           73 I-QGKN--YKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKT  114 (146)
T ss_dssp             E-TTEE--EEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTG
T ss_pred             c-CCce--EEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhh
Confidence            1 1212  2333332 2211  11223445689999999987653

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.77  E-value=5e-19  Score=145.83  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             eEEEEEEEEEeecCc-----------ccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeee
Q 031232           39 RQVVGCIPYRYKCVK-----------QSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV  107 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~-----------~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~  107 (163)
                      ..++|+|+|+.....           .+..+.+++.+|||+++...+.|.||||++|+|||+++||+||++||||+.+..
T Consensus         3 ~~aag~i~~r~~~~~~i~~~~~i~~~~~~~i~~~~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~   82 (364)
T 3fjy_A            3 LEAAGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKL   82 (364)
T ss_dssp             CCEEEEEEEEECTTSHHHHCGGGGGGSCHHHHHTTEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEE
T ss_pred             ccccCcEEEEeeccccccCCccccccccccccCCceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeee
Confidence            357899999974210           011223567899999998778999999999999999999999999999999887


Q ss_pred             eceeeeEEEEeeCCCC-----------ceEEEEEEEEEecccc-----------C-CCCcCcceeEEEEecCCCccC
Q 031232          108 ECELLGEWNFKSRAHN-----------TDYQGYMFPLLVQDQL-----------A-EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       108 ~~~~l~~~~~~~~~~~-----------~~~~~~~f~~~~~~~~-----------~-~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ... ++.+.+.....+           .....++|.+......           . ...+++..+++|++++++...
T Consensus        83 ~~~-l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  158 (364)
T 3fjy_A           83 GPY-LCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKI  158 (364)
T ss_dssp             EEE-EEEEC---------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHH
T ss_pred             ccc-cceEEEeccCCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHH
Confidence            776 776555443211           1345567777655431           0 122345689999999987643

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.77  E-value=1.9e-18  Score=128.40  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             eEEEEEEEcCC-----CCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232           63 LEVLVISSQKG-----KGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (163)
Q Consensus        63 ~~vLLv~r~~~-----~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (163)
                      ++|||.+|...     |.|.| |||++++|||+++||+||++||||+.+..... ++.+.+...  ......++|.+...
T Consensus        49 ~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~--~~~~~~~~f~~~~~  125 (180)
T 2fkb_A           49 GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-HGQFYFEDK--NCRVWGALFSCVSH  125 (180)
T ss_dssp             SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-EEEEEEEET--TEEEEEEEEEEECC
T ss_pred             CEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEE-EEEEEecCC--CceEEEEEEEEecC
Confidence            36999887642     57999 99999999999999999999999998766666 776665443  23455677777643


Q ss_pred             cccCCCCcCcceeEEEEecCCCccC
Q 031232          137 DQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .. ......+..+++|++++++...
T Consensus       126 ~~-~~~~~~E~~~~~W~~~~el~~~  149 (180)
T 2fkb_A          126 GP-FALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             CC-CCCCTTTEEEEEEECHHHHHTT
T ss_pred             CC-cCCChhHhheEEEecHHHHHHH
Confidence            22 2223445678999999887653

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.76  E-value=4.5e-18  Score=129.36  Aligned_cols=95  Identities=18%  Similarity=0.001  Sum_probs=68.5

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      +|||+++.+.    +.|.||||++|+|||+++||+||++||||+.+..... ++.+.......  ....++|.+......
T Consensus        61 ~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~~~--~~~~~~f~a~~~~~~  137 (198)
T 1vhz_A           61 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLSMAPSYF--SSKMNIVVAQDLYPE  137 (198)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEECCTTTC--CCEEEEEEEEEEEEC
T ss_pred             EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEEeCCCCcc--CcEEEEEEEEeCCcc
Confidence            7999987543    3699999999999999999999999999999887776 77665332222  223455666543322


Q ss_pred             -CCCCcCcceeEEEEecCCCccC
Q 031232          140 -AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       140 -~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                       ....+.+..++.|++++++...
T Consensus       138 ~~~~~~~E~~~~~w~~~~el~~~  160 (198)
T 1vhz_A          138 SLEGDEPEPLPQVRWPLAHMMDL  160 (198)
T ss_dssp             CCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             cCCCCCCceEEEEEEEHHHHHHH
Confidence             1223344578999999998764

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.76  E-value=1e-17  Score=133.42  Aligned_cols=94  Identities=14%  Similarity=0.025  Sum_probs=71.5

Q ss_pred             eEEEEEEEcC--CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (163)
                      ++|||+++..  .|.|.+|||++|+|||+++||+||++||||+++..... ++.+.+...    ....++|.+.......
T Consensus       151 ~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~-~~~~~~~~~----~~~~~~f~a~~~~~~~  225 (269)
T 1vk6_A          151 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPFP----QSLMTAFMAEYDSGDI  225 (269)
T ss_dssp             TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEETT----EEEEEEEEEEEEECCC
T ss_pred             CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEE-EEEEecCCC----CEEEEEEEEEECCCCc
Confidence            3799999876  37899999999999999999999999999999987777 776654432    2345667776554322


Q ss_pred             CCCcCcceeEEEEecCCCccC
Q 031232          141 EWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       141 ~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .....+..+++|++++++...
T Consensus       226 ~~~~~E~~~~~W~~~~el~~l  246 (269)
T 1vk6_A          226 VIDPKELLEANWYRYDDLPLL  246 (269)
T ss_dssp             CCCTTTEEEEEEEETTSCCSC
T ss_pred             CCCCcceEEEEEEEHHHhhhc
Confidence            222345689999999998653

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.76  E-value=1.3e-18  Score=131.11  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=77.8

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      ..+..+++|+++.          +++.+|||++|..     .|.|.||||++++|||+++||+||++||||+.+..... 
T Consensus        32 ~~~~~~~~v~i~~----------~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-  100 (194)
T 1nqz_A           32 HYRRAAVLVALTR----------EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-  100 (194)
T ss_dssp             -CEEEEEEEEEES----------SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-
T ss_pred             CCceEEEEEEEec----------CCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEE-
Confidence            4566777777743          2334799999864     37899999999999999999999999999999876666 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCC
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMP  158 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~  158 (163)
                      ++.+.+.....  ....++|.+.+....  ......+..+++|++++++
T Consensus       101 l~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el  147 (194)
T 1nqz_A          101 LGELDDVFTPV--GFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAEL  147 (194)
T ss_dssp             EEECCCEEETT--TEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHH
T ss_pred             EEEccCccCCC--CeEEEEEEEEecCCccccCCCccceeEEEEEEHHHh
Confidence            66655443322  245567777665322  2233445689999999887

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.76  E-value=5.3e-18  Score=120.48  Aligned_cols=92  Identities=16%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      +|||++|...    |.|.||||++++|||+++||.||++||||+.+..... ++.+.+....  .....++|.+......
T Consensus        21 ~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~   97 (140)
T 2rrk_A           21 KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEY-VASHQREVSG--RIIHLHAWHVPDFHGT   97 (140)
T ss_dssp             EEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEE-EEEEEEEETT--EEEEEEEEEESEEEEC
T ss_pred             EEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccE-EEEEEEecCC--cEEEEEEEEEEeeCCC
Confidence            7999988652    7899999999999999999999999999999877666 7776555432  2345567776544321


Q ss_pred             CCCCcCcceeEEEEecCCCcc
Q 031232          140 AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .  ...+..+++|++++++..
T Consensus        98 ~--~~~e~~~~~W~~~~el~~  116 (140)
T 2rrk_A           98 L--QAHEHQALVWCSPEEALQ  116 (140)
T ss_dssp             C--CCSSCSCEEEECHHHHTT
T ss_pred             c--CCCccceeEEeCHHHHhh
Confidence            1  223456899999988654

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=133.17  Aligned_cols=134  Identities=14%  Similarity=0.010  Sum_probs=73.9

Q ss_pred             cccccccccccccCCCcccccCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---------------------
Q 031232           14 VTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---------------------   72 (163)
Q Consensus        14 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---------------------   72 (163)
                      +++-.........+|+...+.--...-+|++|+++.           ++.++||+++.+                     
T Consensus        11 ~~~~~~~~~~~~~~G~~~~~e~v~~~~aV~vl~~~~-----------~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~   79 (218)
T 3q91_A           11 VDLGTENLYFQSMNGAQKSWDFMKTHDSVTVLLFNS-----------SRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQ   79 (218)
T ss_dssp             ------------------------CCCEEEEEEEEG-----------GGTEEEEEEEECHHHHHHHTC------------
T ss_pred             cccceeEEEEECCCCCEEEEEEEEcCCeEEEEEEEC-----------CCCEEEEEEcccccccccccccccccccccccc
Confidence            334333444455667665443334456777888864           234799998754                     


Q ss_pred             --------------CCCEEecCcccCC-CCCHHHHHHHHHHHHhCCee--eeeceeeeEEEEeeCCCCceEEEEEEEEEe
Q 031232           73 --------------GKGMLFPKGGWEI-DESIQEAALRETIEEAGVTG--IVECELLGEWNFKSRAHNTDYQGYMFPLLV  135 (163)
Q Consensus        73 --------------~~~W~lPGG~ve~-gEs~~eaA~REl~EEtGl~~--~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~  135 (163)
                                    .+.|+||||++|+ |||+++||+||++||||+.+  ..... ++.+......  .....++|.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~-l~~~~~~~g~--~~~~~~~f~a~~  156 (218)
T 3q91_A           80 DGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRR-VATYWSGVGL--TGSRQTMFYTEV  156 (218)
T ss_dssp             -------------CCEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEE-EEEEEEC-----CCEEEEEEEEEE
T ss_pred             ccccccccccccCCCeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEE-EEEEecCCCc--cceEEEEEEEEE
Confidence                          3469999999999 99999999999999999998  44444 6654332221  224556777765


Q ss_pred             cccc------CCCCcCcceeEEEEecCCCccC
Q 031232          136 QDQL------AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       136 ~~~~------~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ....      ....+.|..++.|++++++...
T Consensus       157 ~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~  188 (218)
T 3q91_A          157 TDAQRSGPGGGLVEEGELIEVVHLPLEGAQAF  188 (218)
T ss_dssp             CGGGBCC---------CCEEEEEEEGGGHHHH
T ss_pred             CCcccccCCCCCCCCCcEEEEEEEEHHHHHHH
Confidence            5321      1222345689999999987653

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.75  E-value=2.4e-18  Score=129.37  Aligned_cols=108  Identities=13%  Similarity=0.095  Sum_probs=75.8

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeee-cee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE-CEL  111 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~-~~~  111 (163)
                      ..+|++++++.            +++|||++|..     .|.|.+ |||++++|||+++||+||++||||+.+... .. 
T Consensus        32 ~~~v~~~i~~~------------~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-   98 (190)
T 1hzt_A           32 HLAFSSWLFNA------------KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI-   98 (190)
T ss_dssp             EECEEEEEECT------------TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE-
T ss_pred             EEEEEEEEEcC------------CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhee-
Confidence            35666667653            23699998864     378999 999999999999999999999999998765 44 


Q ss_pred             eeEEEEeeCCC-C--ceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAH-N--TDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~-~--~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+..... .  .....++|.+...... .....+..+++|++++++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~E~~~~~W~~~~el~~  149 (190)
T 1hzt_A           99 YPDFRYRATDPSGIVENEVCPVFAARTTSAL-QINDDEVMDYQWCDLADVLH  149 (190)
T ss_dssp             ETTCEEEEECTTSCEEEEECCEEEEEBCSCC-CCCTTTEEEEEEECHHHHHH
T ss_pred             eeeEEEEeeCCCCCcceEEEEEEEEecCCCC-cCCccceeeEEEecHHHHHH
Confidence            55555432211 1  2345567777655422 22334568999999987654

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=1.1e-18  Score=130.16  Aligned_cols=121  Identities=18%  Similarity=0.087  Sum_probs=78.6

Q ss_pred             ccCCCc-ccccCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHH
Q 031232           25 SRTGRH-LQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIE   99 (163)
Q Consensus        25 ~~~g~~-~~~~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPGG~ve~gEs~~eaA~REl~E   99 (163)
                      ...|+. ..++-...+.+|++++++.            +++|||+++..    .+.|.||||++++|||+++||+||++|
T Consensus        26 ~~~g~~~~~~~~~~~~~~v~v~i~~~------------~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~E   93 (182)
T 2yvp_A           26 THTGRELTYVYRPGPVAASFVLPVTE------------RGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELRE   93 (182)
T ss_dssp             CTTSCEEEEEEBCSSCEEEEEEEBCT------------TSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHH
T ss_pred             CCCCCEeeEEEEEecCCEEEEEEEcC------------CCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHH
Confidence            345554 2222223345666666643            24799998864    367999999999999999999999999


Q ss_pred             HhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc--ccCCCCcCcceeEEEEecCCCcc
Q 031232          100 EAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       100 EtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      |||+.+..... ++.+....  .......++|.+....  .....+..+..+++|++++++..
T Consensus        94 EtGl~~~~~~~-l~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  153 (182)
T 2yvp_A           94 EVGAEAETLIP-LPSFHPQP--SFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYA  153 (182)
T ss_dssp             HHCEECSCEEE-CCCBCSCT--TTBCCEEEEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHH
T ss_pred             HhCCCcccEEE-EEEEeCCC--CccccEEEEEEEeccccCCCCCCCCCceEEEEEEEHHHHHH
Confidence            99999876665 66543221  1223345666665322  11122344568999999987654

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.75  E-value=9.6e-19  Score=127.44  Aligned_cols=113  Identities=21%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             CCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceee--
Q 031232           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELL--  112 (163)
Q Consensus        36 ~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l--  112 (163)
                      ..++.+|++++++.            +++|||++|.. .+.|.+|||++++|||+++||+||++||||+.+.......  
T Consensus        11 ~~~~~~v~~~i~~~------------~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   78 (165)
T 1f3y_A           11 EGYRRNVGICLMNN------------DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPY   78 (165)
T ss_dssp             SSCCCEEEEEEECT------------TSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSS
T ss_pred             cceeeeEEEEEECC------------CCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhccccc
Confidence            35678888888853            24799999875 3789999999999999999999999999999864322101  


Q ss_pred             -eEEEEeeC----------CCCceEEEEEEEEEecccc-CCC------CcCcceeEEEEecCCCcc
Q 031232          113 -GEWNFKSR----------AHNTDYQGYMFPLLVQDQL-AEW------PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       113 -~~~~~~~~----------~~~~~~~~~~f~~~~~~~~-~~~------~~~e~~~~~W~~~~e~~~  160 (163)
                       ..+.+...          ........++|.+.+.... ...      ++.+..+++|++++++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  144 (165)
T 1f3y_A           79 WLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID  144 (165)
T ss_dssp             CCBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHH
T ss_pred             ceeeecCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHH
Confidence             11111100          0000113356666654321 111      234568999999988755

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.74  E-value=2.5e-17  Score=132.43  Aligned_cols=124  Identities=15%  Similarity=0.030  Sum_probs=80.0

Q ss_pred             CCeEEEEEEEEEeecC--cccccc---cCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCee------
Q 031232           37 GRRQVVGCIPYRYKCV--KQSLDI---NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG------  105 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~--~~~~~~---~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~------  105 (163)
                      ++..++++|+.+.+.+  +.....   ..+..+|||++|...|.|.||||+|++|||+++||+||++||||+.+      
T Consensus       108 gp~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~  187 (292)
T 1q33_A          108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE  187 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSH
T ss_pred             CccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcccccccc
Confidence            5678999999876311  110000   12457899999988899999999999999999999999999999983      


Q ss_pred             ------eeeceee---eE--EEEeeCCCC----ceEEEEEEEEEeccc-----cCCCCcCcceeEEEEecCCCccC
Q 031232          106 ------IVECELL---GE--WNFKSRAHN----TDYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       106 ------~~~~~~l---~~--~~~~~~~~~----~~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                            ..... +   +.  |........    ......+|.+.....     ....+.++..+++|++++++..+
T Consensus       188 ~~~l~~~l~~l-~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L  262 (292)
T 1q33_A          188 KREIEEKLHKL-FSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL  262 (292)
T ss_dssp             HHHHHHHHHHH-TTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC
T ss_pred             chhhHHHHHHH-hhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCccc
Confidence                  11222 2   22  221211111    144555666554321     11233445689999999998753

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.74  E-value=8.7e-18  Score=128.80  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=71.7

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW  115 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~  115 (163)
                      -+|+++++..++        ++..+|||+++.+.    +.|.||||++++|||+++||+||++||||+.+..... ++.+
T Consensus        62 ~av~v~~v~~~~--------~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~-l~~~  132 (212)
T 2dsc_A           62 DGVAVIPVLQRT--------LHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAEC-SPAV  132 (212)
T ss_dssp             SEEEEEEEEECT--------TSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEE-CCCE
T ss_pred             CEEEEEEEEeCC--------CCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEE-eccE
Confidence            355666555431        12457999986432    4699999999999999999999999999999877666 5544


Q ss_pred             EEeeCCCCceEEEEEEEEEeccc-------cCCCCcCcceeEEEEecCCCcc
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQ-------LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~-------~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ........  ...++|.+.+...       .....+.+..++.|++++++..
T Consensus       133 ~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  182 (212)
T 2dsc_A          133 CMDPGLSN--CTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQ  182 (212)
T ss_dssp             ESCTTTBC--CEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHH
T ss_pred             EcCCCccC--ceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHH
Confidence            22211112  2334555543221       1112234558999999998764

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.73  E-value=4.3e-18  Score=128.64  Aligned_cols=107  Identities=14%  Similarity=0.008  Sum_probs=72.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC----------CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE  108 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~----------~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~  108 (163)
                      ..+|+++++..           +++++||+++.+          .+.|.||||+++ |||+++||+||++||||+.+...
T Consensus        45 ~~av~v~~~~~-----------~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~  112 (191)
T 3o6z_A           45 GNGATILLYNT-----------KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEV  112 (191)
T ss_dssp             CCEEEEEEEET-----------TTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCE
T ss_pred             CCEEEEEEEEC-----------CCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcE
Confidence            34566666653           345899998763          357999999999 99999999999999999998766


Q ss_pred             ceeeeEEEEeeCCCCceEEEEEEEEEeccccC----CCCcCcceeEEEEecCCCcc
Q 031232          109 CELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       109 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .. ++.+.....  ......++|.+.......    ...+.+..+++|++++++..
T Consensus       113 ~~-l~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  165 (191)
T 3o6z_A          113 RK-LFELYMSPG--GVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALE  165 (191)
T ss_dssp             EE-EEEEESCTT--TBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHH
T ss_pred             EE-EEEEEeCCC--ccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHH
Confidence            66 665433221  122345677776543211    11244568999999998754

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.73  E-value=2.5e-18  Score=120.44  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||++|...    |.|.||||++++|||+.+||.||++||||+.+..... ++.+.+...  ......++|.+.....
T Consensus        16 ~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~   92 (129)
T 1mut_A           16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFP--DRHITLWFWLVERWEG   92 (129)
T ss_dssp             TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECC-CCCCBCCCS--SCEEECCCEEEEECSS
T ss_pred             CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceE-EEEEEEecC--CceEEEEEEEEEccCC
Confidence            47999998764    7899999999999999999999999999999877666 665543332  2234456777765432


Q ss_pred             cCCCCcCcceeEEEEecCCCccC
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  ...+..+++|++++++...
T Consensus        93 ~~--~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           93 EP--WGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             CC--CCCSSCCCEEEESSSCCTT
T ss_pred             cc--CCcccceeEEeCHHHcccc
Confidence            21  2234568999999998653

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.73  E-value=9.4e-18  Score=123.92  Aligned_cols=105  Identities=20%  Similarity=0.147  Sum_probs=70.2

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC----CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~----~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      +.+|++++++ +            +++||+++.+    .+.|.||||++++|||+++||.||++||||+ +..... ++.
T Consensus        34 ~~~v~vii~~-~------------~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~-l~~   98 (170)
T 1v8y_A           34 KPAVAVIALR-E------------GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTY-LFS   98 (170)
T ss_dssp             CCEEEEEEEE-T------------TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEE-EEE
T ss_pred             CCeEEEEEEE-C------------CEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCcee-eEE
Confidence            3577777776 3            2699998754    2679999999999999999999999999999 776666 665


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.....  ......++|.+....... ...+.+..+++|++++++..
T Consensus        99 ~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  143 (170)
T 1v8y_A           99 YFVSPG--FTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALE  143 (170)
T ss_dssp             EESCTT--TBCCEEEEEEEEEEEECC--------CEEEEECHHHHHH
T ss_pred             EecCCC--ccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHH
Confidence            532221  122345566665433222 22334557999999987654

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.72  E-value=9.3e-18  Score=123.69  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEE-ecCcccCCCCCHHHHHHHHHHHHhCCeeeeece-e
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECE-L  111 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~-lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~  111 (163)
                      ..++++++++.            +++|||++|..     .|.|. +|||++++|||+.+||+||++||||+.+..... .
T Consensus        34 ~~~v~v~i~~~------------~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~  101 (171)
T 1q27_A           34 VRVVNAFLRNS------------QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP  101 (171)
T ss_dssp             CEEEEEEEEET------------TTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEE
T ss_pred             ceEEEEEEECC------------CCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEE
Confidence            45666666653            23799998754     37798 999999999999999999999999999766431 1


Q ss_pred             eeEEE-EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          112 LGEWN-FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       112 l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      ++.+. +...  ... ..++|.+..... ......+..+++|++++++.
T Consensus       102 ~~~~~~~~~~--~~~-~~~~f~~~~~~~-~~~~~~E~~~~~W~~~~el~  146 (171)
T 1q27_A          102 LASFSPFQTT--LSS-FMCVYELRSDAT-PIFNPNDISGGEWLTPEHLL  146 (171)
T ss_dssp             EEEECSSSSC--CSS-EEEEEEEECCCC-CCSCTTTCSCCEEECHHHHH
T ss_pred             EEEEeccCCC--Ccc-EEEEEEEEECCc-cccCchhhheEEEecHHHHH
Confidence            44443 2222  122 557777766322 12223445789999998765

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.72  E-value=4e-18  Score=130.26  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=63.8

Q ss_pred             eEEEEEEEcCC----CCEEecCcccC-CCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWE-IDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve-~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++|||+++.+.    +.|.||||+++ +|||+++||+||++||||+.+..... ++.+ +..... .....++|.+....
T Consensus        55 ~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~-~~~~~~-~~~~~~~f~~~~~~  131 (207)
T 1mk1_A           55 GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LVDL-DTAPGF-SDESVRVYLATGLR  131 (207)
T ss_dssp             SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEE-CSCTTT-BCCCEEEEEEEEEE
T ss_pred             CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEE-EEEE-EcCCCc-cccEEEEEEEEccc
Confidence            47999987643    57999999999 99999999999999999999887776 6655 222221 12234566665433


Q ss_pred             ccCC---CCcCcceeEEEEecCCCcc
Q 031232          138 QLAE---WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       138 ~~~~---~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....   ..+.+..+++|++++++..
T Consensus       132 ~~~~~~~~~~~E~~~~~Wv~~~el~~  157 (207)
T 1mk1_A          132 EVGRPEAHHEEADMTMGWYPIAEAAR  157 (207)
T ss_dssp             ECCC----------CEEEEEHHHHHH
T ss_pred             cCCCCCCCCCCceEEEEEEEHHHHHH
Confidence            2211   2234457899999987654

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.72  E-value=7.8e-18  Score=136.53  Aligned_cols=110  Identities=14%  Similarity=0.075  Sum_probs=72.9

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC---CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~---~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .++.+|++|+++.             ++|||++|+.   .|.|.+|||++|+|||+++||+||++||||+++..... ++
T Consensus       201 ~~~~~v~~vi~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~  266 (341)
T 2qjo_A          201 PTFITTDAVVVQA-------------GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVL-RG  266 (341)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHH-HH
T ss_pred             CCceEEEEEEEeC-------------CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccc-cc
Confidence            3467788888753             2799999876   47899999999999999999999999999999875443 32


Q ss_pred             ----EEEEeeCCC--CceEEEEEEEEEeccccC--CCCcCcceeEEEEecCCCcc
Q 031232          114 ----EWNFKSRAH--NTDYQGYMFPLLVQDQLA--EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ----~~~~~~~~~--~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~~~~e~~~  160 (163)
                          ...+.....  ......++|.+.......  ..++.+..+++|++++++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  321 (341)
T 2qjo_A          267 SIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYA  321 (341)
T ss_dssp             TEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHH
T ss_pred             cccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhh
Confidence                222322221  223445667666543221  12334567899999988764

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.72  E-value=4.2e-18  Score=131.13  Aligned_cols=111  Identities=15%  Similarity=-0.029  Sum_probs=75.5

Q ss_pred             CCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-------CCEEe-cCcccCCCCC--H----HHHHHHHHHHH
Q 031232           35 QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-------KGMLF-PKGGWEIDES--I----QEAALRETIEE  100 (163)
Q Consensus        35 ~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-------~~W~l-PGG~ve~gEs--~----~eaA~REl~EE  100 (163)
                      +..+++.+..+++..+            ++|||++|...       +.|.+ |||+||+|||  +    ++||+||++||
T Consensus        63 d~~~~q~i~~~II~~~------------grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EE  130 (211)
T 3e57_A           63 DETTKQVIPYVVIMDG------------DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEE  130 (211)
T ss_dssp             CTTEEEEEEEEEEEET------------TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccceEEEEEEEEC------------CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHH
Confidence            3456666666666542            37999998643       57999 9999999999  5    99999999999


Q ss_pred             hCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          101 AGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       101 tGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ||+++..... +|.+.+........+..++|.+.......  .+.+..+++|++++++..
T Consensus       131 tGl~v~~~~~-ig~~~~~~~~~~~~~l~~~f~~~~~~g~~--~~~E~~~~~W~~~~eL~~  187 (211)
T 3e57_A          131 VDVSLRELEF-LGLINSSTTEVSRVHLGALFLGRGKFFSV--KEKDLFEWELIKLEELEK  187 (211)
T ss_dssp             EEEEEEEEEE-EEEEECCSSHHHHTEEEEEEEEEEEEEEE--SCTTTCEEEEEEHHHHHH
T ss_pred             hCCeeeccEE-EEEEeccCCCCCeEEEEEEEEEEeCCcee--CCCCeEEEEEEEHHHHHH
Confidence            9999887777 78776532211223445678777653322  234457899999987654

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.71  E-value=9.3e-18  Score=128.62  Aligned_cols=107  Identities=20%  Similarity=0.077  Sum_probs=72.0

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCC---------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      .+|++++++.           ++++|||+++.+.         +.|.||||++|+|||+++||+||++||||+.+.....
T Consensus        58 ~av~vl~~~~-----------~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~  126 (209)
T 1g0s_A           58 HAAVLLPFDP-----------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP  126 (209)
T ss_dssp             CEEEEEEEET-----------TTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE
T ss_pred             CEEEEEEEEC-----------CCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEE
Confidence            4666777753           2347999987542         3599999999999999999999999999999876666


Q ss_pred             eeeEEEEeeCCCCceEEEEEEEEEeccc-c-C---CCCcCcceeEEEEecCCCcc
Q 031232          111 LLGEWNFKSRAHNTDYQGYMFPLLVQDQ-L-A---EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       111 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~-~-~---~~~~~e~~~~~W~~~~e~~~  160 (163)
                       ++.+. ..... .....++|.+..... . .   ...+.+..++.|++++++..
T Consensus       127 -l~~~~-~~~g~-~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~  178 (209)
T 1g0s_A          127 -VLSFL-ASPGG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ  178 (209)
T ss_dssp             -EEEEE-SCTTT-BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred             -eEEEe-cCCCc-cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence             66652 22221 123456677765321 1 1   12334457899999998754

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.70  E-value=1.3e-17  Score=132.74  Aligned_cols=107  Identities=21%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      .++++|+++.           +.++|||+++.. .+.|.+|||++++|||+++||+||++||||+++..... ++.|...
T Consensus       102 ~~v~avv~~~-----------~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~-~~~~~~~  169 (271)
T 2a6t_A          102 PVRGAIMLDM-----------SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDM  169 (271)
T ss_dssp             CEEEEEEBCS-----------SSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEE
T ss_pred             CeEEEEEEEC-----------CCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeee-eeeeccC
Confidence            4667777764           234899999865 47899999999999999999999999999999765433 3323211


Q ss_pred             eCCCCceEEEEEEEEEecccc---CCCCcCcceeEEEEecCCCccC
Q 031232          119 SRAHNTDYQGYMFPLLVQDQL---AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .. ..  ...++|.+......   ....+.+..+++|++++++...
T Consensus       170 ~~-~~--~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  212 (271)
T 2a6t_A          170 TI-RG--QNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF  212 (271)
T ss_dssp             EE-TT--EEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             Cc-CC--ceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence            11 11  13345555433211   1123445688999999998653

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.69  E-value=7.2e-17  Score=131.61  Aligned_cols=110  Identities=16%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece---e
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE---L  111 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~---~  111 (163)
                      ...+|++|+++.             ++|||++++..   +.|.+|||++|+|||+++||+||++||||+++.....   .
T Consensus       207 ~~~~v~~vv~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~  273 (352)
T 2qjt_B          207 NFVTVDALVIVN-------------DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAK  273 (352)
T ss_dssp             EEEEEEEEEEET-------------TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHE
T ss_pred             CceEEEEEEEEC-------------CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhccee
Confidence            356777777743             27999998763   7899999999999999999999999999999764332   0


Q ss_pred             eeEEEEeeCCC--CceEEEEEEEEEecccc--C-CCCcCcceeEEEEec-CCCcc
Q 031232          112 LGEWNFKSRAH--NTDYQGYMFPLLVQDQL--A-EWPEKNVRSRKWVCT-FMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~--~~~~~~~~f~~~~~~~~--~-~~~~~e~~~~~W~~~-~e~~~  160 (163)
                      .+...+.....  ......++|.+.+....  . ..++.+..+++|+++ +++..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~  328 (352)
T 2qjt_B          274 RCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKN  328 (352)
T ss_dssp             EEEEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHH
T ss_pred             eeeEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHh
Confidence            12222322221  22344556666554322  1 123455689999999 77654

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.67  E-value=2e-16  Score=114.83  Aligned_cols=109  Identities=18%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHH-HHHHHHHHHHhC-Ceeeeecee
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQ-EAALRETIEEAG-VTGIVECEL  111 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~-eaA~REl~EEtG-l~~~~~~~~  111 (163)
                      ++..+.+|+++..         +.+++|||++|...    |.|.||||++++||+++ +||.||++|||| +.+..... 
T Consensus        18 ~~~~~~~vi~~~~---------~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~-   87 (155)
T 1x51_A           18 EESSATCVLEQPG---------ALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-   87 (155)
T ss_dssp             EEEEEEEEEEEEC---------SSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-
T ss_pred             eEEEEEEEEEecC---------CCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeee-
Confidence            3556666666542         12458999988653    68999999999999996 999999999999 87654444 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ++.+.+...  ......++|.+.+..... . ..+..+++|++++++..
T Consensus        88 l~~~~~~~~--~~~~~~~~~~~~~~~~~~-~-~~e~~~~~W~~~~el~~  132 (155)
T 1x51_A           88 LGEVVHTFS--HIKLTYQVYGLALEGQTP-V-TTVPPGARWLTQEEFHT  132 (155)
T ss_dssp             CCCBCCBCS--SCEEEEEEEEEECSSCCC-C-CCCCTTEEEEEHHHHHH
T ss_pred             cceEEEecC--CccEEEEEEEEEEcCCCC-C-CCCCCccEEccHHHhhh
Confidence            554433322  223455677776653221 1 12346789999987643

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.65  E-value=9.7e-16  Score=117.63  Aligned_cols=117  Identities=12%  Similarity=-0.029  Sum_probs=75.8

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHHhCCeeeeece----eee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGIVECE----LLG  113 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gE-s~~eaA~REl~EEtGl~~~~~~~----~l~  113 (163)
                      +.++.++++..+. .-.-.+-+++++|||.+| ..+.|.||||++++|| |+++||+||++||||+.+.....    .++
T Consensus        33 ~~~~~~~l~~~~~-~vv~~i~~~~~~vLl~~r-~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~  110 (212)
T 1u20_A           33 KHACHALLHAPSQ-AKLFDRVPIRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRS  110 (212)
T ss_dssp             EEEEEEEEEEECC-CEETTTEECCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEE
T ss_pred             cccceEEEeCCCc-eEEEEEEecCCEEEEEEe-CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEE
Confidence            5566666665421 000111124567888877 4689999999999999 99999999999999999764431    144


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccC----------CCCcCcceeEEEEecCCCcc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLA----------EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .+.+...   .....++|.+.......          ...+.+..++.|++++++..
T Consensus       111 ~~~~~~~---~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          111 SQVREHP---QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             EEEECTT---SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             eccccCC---CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence            4443322   34566788877643211          01223457899999998854

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=5.3e-15  Score=115.38  Aligned_cols=114  Identities=22%  Similarity=0.244  Sum_probs=79.2

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCc-eEEEEEEEcCC-----CCEEecCcccCCCCC--------------------HH
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEED-LEVLVISSQKG-----KGMLFPKGGWEIDES--------------------IQ   90 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~-~~vLLv~r~~~-----~~W~lPGG~ve~gEs--------------------~~   90 (163)
                      .+|.++.+|+++..         .++ .+|||++|...     |.|.||||+||++|+                    +.
T Consensus         6 ~~r~aA~lill~~~---------~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~   76 (232)
T 3qsj_A            6 DIRKAATLVVIRDG---------ANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALA   76 (232)
T ss_dssp             CEEEEEEEEEEEEC---------GGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHH
T ss_pred             CCcceEEEEEEEcC---------CCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHH
Confidence            46788888988874         223 68999999754     789999999999987                    58


Q ss_pred             HHHHHHHHHHhCCeeeeece--------------------------------------eeeEEE-E-eeCCCCceEEEEE
Q 031232           91 EAALRETIEEAGVTGIVECE--------------------------------------LLGEWN-F-KSRAHNTDYQGYM  130 (163)
Q Consensus        91 eaA~REl~EEtGl~~~~~~~--------------------------------------~l~~~~-~-~~~~~~~~~~~~~  130 (163)
                      .||+||++|||||.+.....                                      .+..+. + .......++...+
T Consensus        77 ~aAiRE~~EE~Gl~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~F  156 (232)
T 3qsj_A           77 VTALRETAEEIGWLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRF  156 (232)
T ss_dssp             HHHHHHHHHHHSCCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEE
T ss_pred             HHHHHHHHHHhCceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEE
Confidence            99999999999997432110                                      011111 1 1112234688889


Q ss_pred             EEEEeccccC-CCCcCcceeEEEEecCCCc
Q 031232          131 FPLLVQDQLA-EWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       131 f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~  159 (163)
                      |.+.+..... .....|..++.|+++.+++
T Consensus       157 Fla~lpq~~~v~~d~~E~~~~~W~~p~eal  186 (232)
T 3qsj_A          157 FLCVGQHLGEPRLHGAELDAALWTPARDML  186 (232)
T ss_dssp             EEEECSSCCCCCCCSSSEEEEEEEEHHHHH
T ss_pred             EEEECCCCCCCCCCCCceEEEEEEcHHHHH
Confidence            9888773321 3344556899999999885

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.56  E-value=7.1e-15  Score=113.47  Aligned_cols=93  Identities=13%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             EEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHHhCCeeee--eceeeeEEEEeeCCCCceEEEEEEEEEeccccC
Q 031232           64 EVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA  140 (163)
Q Consensus        64 ~vLLv~r~~~~~W~lPGG~ve~gE-s~~eaA~REl~EEtGl~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  140 (163)
                      ++||+.+. .+.|.||||++|+|| |+++||+||++||||+.+..  ... +..+.... ........++|.+.+.....
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~-l~~~~~~~-~~~~~~~~~~f~~~l~~~~~  142 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVER-TDYRSSHV-GSGPRVVAHFYAKRLTLEEL  142 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCG-GGEEEEEE-CSSSSEEEEEEEEECCHHHH
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEE-EEEEeecC-CCCCeEEEEEEEEEeccccc
Confidence            35665554 578999999999999 99999999999999998763  222 33222211 11124556777777653211


Q ss_pred             ----------CCCcCcceeEEEEecCCCc
Q 031232          141 ----------EWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       141 ----------~~~~~e~~~~~W~~~~e~~  159 (163)
                                ...+.+..++.|++++++.
T Consensus       143 ~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          143 LAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             HHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             eecccccccccccCCceeeEEEEEHHHhh
Confidence                      1112345789999999876

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.54  E-value=3.5e-14  Score=117.40  Aligned_cols=89  Identities=11%  Similarity=-0.049  Sum_probs=69.5

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||++|...    |.|+||||++|+| |+++|+.||++||||+.+..... ++.+.+....  .....++|.+.....
T Consensus       252 g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~-l~~~~h~~~h--~~~~~~~~~~~~~~~  327 (369)
T 3fsp_A          252 GRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVHG  327 (369)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCC-CCEEEEECSS--EEEEEEEEEEEECCS
T ss_pred             CEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecc-cccEEEEcce--EEEEEEEEEEEEcCC
Confidence            47999998754    7899999999999 99999999999999999888776 7776655442  345567777765532


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                           ..+..+++|++++++..
T Consensus       328 -----~~e~~~~~Wv~~~el~~  344 (369)
T 3fsp_A          328 -----GPVEEPYRLAPEDELKA  344 (369)
T ss_dssp             -----SCCCTTEEEEEGGGGGG
T ss_pred             -----CCCccccEEeeHHHhhh
Confidence                 22346899999998754

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.52  E-value=4.1e-14  Score=110.44  Aligned_cols=109  Identities=11%  Similarity=0.078  Sum_probs=72.7

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEec-CcccCCC------CC---HHHHHHHHHHHHhC
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFP-KGGWEID------ES---IQEAALRETIEEAG  102 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lP-GG~ve~g------Es---~~eaA~REl~EEtG  102 (163)
                      ...++++++++.            ++++||.+|...     |.|.+| ||++++|      |+   +.+||+||++||||
T Consensus        58 ~h~av~v~v~~~------------~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElG  125 (235)
T 2dho_A           58 LHRAFSVFLFNT------------ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELG  125 (235)
T ss_dssp             CEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEEEEcC------------CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHC
Confidence            345666666643            237898887542     689999 5999999      88   49999999999999


Q ss_pred             Ceeee-----eceeeeEEEEeeCCCCc---eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          103 VTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       103 l~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      |.+..     ... ++.+.|.......   ....++|.+........ ...+..+++|++++++..
T Consensus       126 i~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~-~~~Ev~~~~wv~~~el~~  189 (235)
T 2dho_A          126 IPLEEVPPEEINY-LTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNP-DPNEIKSYCYVSKEELKE  189 (235)
T ss_dssp             CCGGGSCGGGSEE-EEEEEEEEECSSSBEEEEEEEEEEEECCCCCCC-CTTTEEEEEEECHHHHHH
T ss_pred             CCccccChhhcEE-EEEEEEeccCCCccceeEEEEEEEEEECCCCcC-ChHHEEEEEEEcHHHHHH
Confidence            98652     234 6766655433222   23456677665432222 234568999999987653

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.50  E-value=9e-14  Score=112.06  Aligned_cols=114  Identities=14%  Similarity=0.122  Sum_probs=77.7

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCE-EecCcccCCCCCHHHHHHHHHHHHhCCeeeeec--
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEC--  109 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W-~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~--  109 (163)
                      ....|-+.+|..+         +++.++||.+|...     |.| .+|+|++++|||+.+||+||+.||+||......  
T Consensus       117 ~~~~vh~~~~~~~---------~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l  187 (300)
T 3dup_A          117 RAYGVHLNGYVGA---------GADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQA  187 (300)
T ss_dssp             CEEEEEEEEEESC---------GGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTC
T ss_pred             EEEEEEEEEEEec---------CCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhc
Confidence            3566777777764         23457888888643     789 589999999999999999999999999864322  


Q ss_pred             eeeeEEEEeeCCCCc--eEEEEEEEEEeccccCCCC-cCcceeEEEEecCCCcc
Q 031232          110 ELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLAEWP-EKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~~~e~~~  160 (163)
                      .+++.+.|.......  ....++|.+.+.......+ +.|..+++|++++++..
T Consensus       188 ~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~  241 (300)
T 3dup_A          188 IPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVE  241 (300)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHH
T ss_pred             cccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHH
Confidence            125555544322222  3355677776664433333 33468999999988754

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.48  E-value=6.9e-14  Score=109.88  Aligned_cols=109  Identities=10%  Similarity=0.056  Sum_probs=72.3

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEecC-cccCCC------CCH---HHHHHHHHHHHhC
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPK-GGWEID------ESI---QEAALRETIEEAG  102 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lPG-G~ve~g------Es~---~eaA~REl~EEtG  102 (163)
                      ...++.+++++.            ++++||.+|..     .|.|.+|+ |++++|      |++   ++||+||++||||
T Consensus        69 ~h~av~v~v~~~------------~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElG  136 (246)
T 2pny_A           69 LHRAFSVVLFNT------------KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELG  136 (246)
T ss_dssp             CEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEeC------------CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHC
Confidence            345666666642            23688888754     26899985 999999      887   9999999999999


Q ss_pred             Ceeee-----eceeeeEEEEeeCCCCc---eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          103 VTGIV-----ECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       103 l~~~~-----~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      |.+..     ... ++.+.|.......   ....++|.+........ ...|..+++|++++++..
T Consensus       137 i~~~~v~~~~l~~-l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~-~~~Ev~~~~wv~~eel~~  200 (246)
T 2pny_A          137 IPGEQISPEDIVF-MTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNP-DPSETKSILYLSQEELWE  200 (246)
T ss_dssp             CCTTTCCGGGSEE-EEEEEEEEESSSSBEEEEEEEEEEEECCCCCCC-CTTTEEEEEEECHHHHHH
T ss_pred             CCccccCccccEE-EEEEEEEecCCCceeeeEEEEEEEEEECCCCCC-ChHHeeEEEEEeHHHHHH
Confidence            98642     233 6666655432222   23456676665432222 234568999999987653

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.34  E-value=3.9e-12  Score=96.77  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=56.9

Q ss_pred             ccCC-CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCC------ee
Q 031232           33 RYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV------TG  105 (163)
Q Consensus        33 ~~~~-~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl------~~  105 (163)
                      .|.+ +.|.+|.+|++...         .+..+|||+|+ ..+.|.||||++++||++++|+.||+.||+|+      ..
T Consensus        51 ~y~~~g~R~sV~avil~~~---------~~~phVLLlq~-~~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~  120 (208)
T 3bho_A           51 EFDKIGMRRTVEGVLIVHE---------HRLPHVLLLQL-GTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDW  120 (208)
T ss_dssp             HHHHHCSEEEEEEEEEEEE---------TTEEEEEEEEE-ETTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----C
T ss_pred             HHHhhCCceEEEEEEEEcC---------CCCcEEEEEEc-CCCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccE
Confidence            4444 77888888887654         34468999998 45689999999999999999999999999994      44


Q ss_pred             eeeceeeeEEE
Q 031232          106 IVECELLGEWN  116 (163)
Q Consensus       106 ~~~~~~l~~~~  116 (163)
                      .+... +|.|.
T Consensus       121 eIge~-lg~ww  130 (208)
T 3bho_A          121 VIDDC-IGNWW  130 (208)
T ss_dssp             EEEEE-EEEEE
T ss_pred             EEhhe-EEEEe
Confidence            44555 77653

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.33  E-value=1.6e-12  Score=105.76  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=69.0

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHh-CCeeeeeceeeeEE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA-GVTGIVECELLGEW  115 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEt-Gl~~~~~~~~l~~~  115 (163)
                      .|+..|++|+.+.+             +|||+  .+.| |.||||.++  ++..++|+||++||| |+++....+ ++.|
T Consensus       181 ~p~~~vgaii~~~g-------------~vLL~--~~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~~~~L-~~v~  241 (321)
T 3rh7_A          181 EGEIRLGAVLEQQG-------------AVFLA--GNET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVTIGFL-YSVY  241 (321)
T ss_dssp             HSCEEEEEEEESSS-------------CEEEB--CSSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEEEEEE-EEEE
T ss_pred             CCcceEEEEEEECC-------------EEEEe--eCCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEeeceE-EEEE
Confidence            47899999999753             69999  5567 999988654  444469999999997 999998887 7776


Q ss_pred             EEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          116 NFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       116 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....  ..  .+..+|.+......       ..+++||++++...
T Consensus       242 ~~~~--~~--~~~i~f~~~~~~g~-------~~e~~~f~~~elp~  275 (321)
T 3rh7_A          242 EDKS--DG--RQNIVYHALASDGA-------PRQGRFLRPAELAA  275 (321)
T ss_dssp             ECTT--TC--CEEEEEEEEECSSC-------CSSSEEECHHHHTT
T ss_pred             EcCC--Cc--eEEEEEEEEeCCCC-------eeeeEEECHHHCCC
Confidence            5432  22  23468888765322       25799999987653

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.32  E-value=5.6e-13  Score=100.61  Aligned_cols=95  Identities=11%  Similarity=-0.060  Sum_probs=61.6

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCC-CHHHHHHHHHHHHhCC-eeeeeceeeeE
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGV-TGIVECELLGE  114 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gE-s~~eaA~REl~EEtGl-~~~~~~~~l~~  114 (163)
                      +.+.++-+.++..++..=-+.+  +-...+|++.+.+|.|.||||+||+|| |+++|+.||+.||+|+ .+..... +..
T Consensus        19 ~~~hach~mlya~~~~~lfg~~--p~r~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y-~~s   95 (214)
T 3kvh_A           19 GWSHSCHAMLYAANPGQLFGRI--PMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADY-LSS   95 (214)
T ss_dssp             TCEEEEEEEEEEEEEEEETTTE--EEEEEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGE-EEE
T ss_pred             CccEeeEEEEEcCCcccccccc--chhheEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeee-EEE
Confidence            4577788888876421100111  112357777777899999999999999 9999999999999997 3554444 444


Q ss_pred             EEEeeCCCCceEEEEEEEEEecc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ..+.+.   .....++|.+....
T Consensus        96 ~~~~yp---~~V~LHfY~crl~~  115 (214)
T 3kvh_A           96 HLTEGP---HRVVAHLYARQLTL  115 (214)
T ss_dssp             EEC-------CEEEEEEEEECCH
T ss_pred             EeccCC---CEEEEEEEEEEeeC
Confidence            333322   24667888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	9e-14
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-11
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	2e-08
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	5e-07
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	1e-05
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	2e-05
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	4e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	6e-05
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-04
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	4e-04
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	5e-04
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	0.002

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 9e-14
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 16/120 (13%)

Query: 36  KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALR 95
            G ++   C+ +R            E+  +LV SS+     + P GG E +E    AA+R
Sbjct: 8   DGYKKRAACLCFRS---------ESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 58

Query: 96  ETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWV 153
           E  EEAGV G +   L+G +          ++ Y++ L+V + L +W +     R R+W 
Sbjct: 59  EVCEEAGVKGTLG-RLVGIFEN----QERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWF 113

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-11
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEE 100
            G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EE
Sbjct: 11  CGLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEE 67

Query: 101 AGVTGIVECELLGE--WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
           AG+       + G          +      Y    +    +        ++ +W+
Sbjct: 68  AGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWL 122

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G        +     
Sbjct: 10  LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD--CSSRINPNEF 67

Query: 117 FKSRAHNTDYQGYMFPLLVQD-QLAEWPEKNVRSRKWV 153
                   + + Y+ P +  D +      K +   +W 
Sbjct: 68  IDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWH 105

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF 117
            N +  EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV    E  L      
Sbjct: 10  FNAKR-EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVR--AEVLLPLYPTR 65

Query: 118 KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
                  + + + F  L++ + A   E+ +    W 
Sbjct: 66  YVNPKGVEREVHWF--LMRGEGAPRLEEGMTGAGWF 99

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG--EW 115
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++ +     LG  + 
Sbjct: 25  SKPENNTMVLVQAPNGAYF-LPGGEIEGTETKEEAIHREVLEELGIS-VEIGCYLGEADE 82

Query: 116 NFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWV 153
            F S    T Y    +  +         P +   +  WV
Sbjct: 83  YFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWV 121

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 55  SLDINEEDLEVLVISSQKG--KGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECEL 111
           +L +  +   VL+   ++G   G      G  +  E+I++ A RE  EE+G+T +     
Sbjct: 8   TLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLT-VDALHK 66

Query: 112 LGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
           +G+  F            +             E +     W 
Sbjct: 67  VGQIVF--EFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWF 106

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSR 120
           E+ +VL++  ++    ++P G  E +E+  EA  RE  EE G+         G  +  + 
Sbjct: 10  ENGKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAV 69

Query: 121 AHNTDYQGYMFPLLVQDQ---------LAEWPEKNVRSRKWV 153
                       +   ++         L +    ++++ +W+
Sbjct: 70  ERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWI 111

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 1/98 (1%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 118
            +  L+ + I  +       P G  +  E I     RE  EEA  +   +         +
Sbjct: 135 GKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ-KTSAEKREIEE 193

Query: 119 SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTF 156
                      +      D         + +       
Sbjct: 194 KLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHD 231

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 58  INEEDLEVLVISSQKGKGML--FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 115
           I ++D  +LV    +G  +    P G  E  ESI +A  RE +EE G + +    L G +
Sbjct: 10  IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP-EVLTGIY 68

Query: 116 NFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWV 153
           ++   ++ T Y  + F   V     +   +  +    W 
Sbjct: 69  HWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWF 107

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIV 107
            V    +   + L+VL+I       +     P G    +ES +++ LRET EE GV    
Sbjct: 42  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 101

Query: 108 ECELLGEWNFKSRAHNTDYQGYMF 131
           E         +       +   + 
Sbjct: 102 ENIEQLHSFSRPDRDPRGWVVTVS 125

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 58  INEEDLEVLVISSQKGKGML-------FPKGGWEIDESIQEAALRETIEEAGVTGIVECE 110
           +NE   ++L++  +   G          P G  E  E+ Q+AA+RE  EE G+      +
Sbjct: 20  LNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV-K 77

Query: 111 LLGEWNFKSRAHNTDY-QGYMFPLLVQDQLAEWPEKNVRSRKWV 153
            LG +  +           ++        LA      +    +V
Sbjct: 78  FLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFV 121

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 56  LDINEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVECELL 112
              NE ++ +L++  + +   G      G  + DES+ +AA R   E  G+   V  E +
Sbjct: 18  FGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLE-NVYMEQV 76

Query: 113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWV 153
           G +    R          +  L+     +       +  WV
Sbjct: 77  GAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWV 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.91
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.89
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.88
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.88
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.88
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.87
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.86
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.86
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.86
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.84
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.84
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.84
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.83
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.82
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.8
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.78
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.77
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.77
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.76
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.76
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.76
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.72
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.71
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.68
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.56
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.53
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.51
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.17

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.91  E-value=2.3e-24  Score=155.75  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .+.++|+||||+.+         +++.+|||++|+..   |.|.||||++++|||+++||+||++||||+++....+ ++
T Consensus         8 ~~~v~Vd~Vi~~~~---------~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~-~~   77 (147)
T d2fb1a2           8 TFYLGIDCIIFGFN---------EGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VG   77 (147)
T ss_dssp             CEEEEEEEEEEEEE---------TTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EE
T ss_pred             CcceEEEEEEEEEe---------CCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceee-ee
Confidence            56789999999876         56679999998753   7899999999999999999999999999999887777 77


Q ss_pred             EEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .+....+....+.+..+|.+.+.........++..+++||+++++..
T Consensus        78 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~  124 (147)
T d2fb1a2          78 AFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPA  124 (147)
T ss_dssp             EECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCC
T ss_pred             EecCCcccCCCceEEEEEEEEecCCcccCCCcchhheEEecHHhchh
Confidence            76555444445566667777665433333333456899999999764

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.89  E-value=4.9e-23  Score=147.14  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      |..+|++|+.+.             +++||+++...   +.|.||||++++|||+++||+||++||||+++..... ++.
T Consensus         2 P~v~va~ii~~~-------------~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~   67 (146)
T d2b0va1           2 PNVTVAAVIEQD-------------DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGI   67 (146)
T ss_dssp             CEEEEEEECEET-------------TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEE
T ss_pred             CeEEEEEEEEeC-------------CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceE-EEE
Confidence            677888887653             37999998765   4699999999999999999999999999999988777 777


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccC-CCCcCcceeEEEEecCCCc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~~~e~~  159 (163)
                      +.+...........++|.+.+..... ...+.+..+++|++++++.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  113 (146)
T d2b0va1          68 YHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIR  113 (146)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHH
T ss_pred             EEEecCCCCeEEEEEEEEEEeecCCCCCCCCcceeEEEEeeHHHHh
Confidence            77766655555666667666554332 3334456889999998753

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.5e-22  Score=142.15  Aligned_cols=105  Identities=25%  Similarity=0.262  Sum_probs=78.9

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      ++.||+|+++.+            ++|||++++ .|.|.||||++++|||+.+||+||++||||+++..... ++...+.
T Consensus         2 ~v~agavv~~~~------------~~vLl~~~~-~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~   67 (126)
T d1vcda1           2 ELGAGGVVFNAK------------REVLLLRDR-MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYPTRYV   67 (126)
T ss_dssp             EEEEEEEEECTT------------SCEEEEECT-TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEE
T ss_pred             EEEEEEEEEECC------------CEEEEEEcC-CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEE-Eeeeeec
Confidence            478999998642            368888764 57899999999999999999999999999999887776 6665555


Q ss_pred             eCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          119 SRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ... ......++|.+.....  ..+.++..+++|++++++..
T Consensus        68 ~~~-~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~~~e~~~  106 (126)
T d1vcda1          68 NPK-GVEREVHWFLMRGEGA--PRLEEGMTGAGWFSPEEARA  106 (126)
T ss_dssp             CTT-SCEEEEEEEEEEEESC--CCCCTTCCEEEEECHHHHHH
T ss_pred             cCC-CeEEEEEEEEEEEcCC--CCCCccceEEEEEEHHHHhh
Confidence            432 2344556677665432  33444567899999998754

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4e-23  Score=146.27  Aligned_cols=117  Identities=26%  Similarity=0.371  Sum_probs=80.9

Q ss_pred             cccCC-CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        32 ~~~~~-~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      +.|+. +++.+||+|||+.+          ++..+||+++++ .+.|.||||++++|||+++||+||++||||+.+....
T Consensus         3 ~~~~~~~~r~~a~~vv~~~~----------~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   72 (135)
T d2fvva1           3 RTYDGDGYKKRAACLCFRSE----------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGR   72 (135)
T ss_dssp             CCBCTTSCEEEEEEEEESST----------TCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEE
T ss_pred             eecCCCCCceEEEEEEEEec----------CCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeE
Confidence            35665 88999999999863          445666766654 4789999999999999999999999999999988777


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      . ++.+.+...  ......++|.+.........+..+..+++||+++++...
T Consensus        73 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  121 (135)
T d2fvva1          73 L-VGIFENQER--KHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKV  121 (135)
T ss_dssp             E-EEEEEETTT--TEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHH
T ss_pred             E-EEEEeeccC--CccEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHH
Confidence            6 666554332  222223333332222222222333478999999987653

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=2.6e-22  Score=141.59  Aligned_cols=111  Identities=19%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE--E
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW--N  116 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~--~  116 (163)
                      .++|+|+++..         +++.++||++++. .|.|.+|||++++|||+.+||+||++||||+++..... +..+  .
T Consensus         3 raag~vv~~~~---------~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~   72 (137)
T d1ktga_           3 KAAGLVIYRKL---------AGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI-HEDCHET   72 (137)
T ss_dssp             EEEEEEEEEEE---------TTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEE-EEEEEEE
T ss_pred             EEEEEEEEEEc---------CCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeee-eeeeeee
Confidence            57889999876         5677899999865 47899999999999999999999999999999765443 2211  1


Q ss_pred             EeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          117 FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       117 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .............+|.+.........+..+..+++|++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~  116 (137)
T d1ktga_          73 LFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIK  116 (137)
T ss_dssp             EEEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHH
T ss_pred             eecCCCcceEEEEEEEEEecCCCCcCCCcceEEEEEEEHHHHHH
Confidence            12222233444556666655554455566678899999988754

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.4e-21  Score=136.95  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=70.2

Q ss_pred             EEEEEEEcCC--CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccccCC
Q 031232           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE  141 (163)
Q Consensus        64 ~vLLv~r~~~--~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  141 (163)
                      ++||++++..  |.|.||||++|+|||+++||.||++||||+.+..... ++.+.+..    .....++|.+........
T Consensus        15 ~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~----~~~~~~~f~~~~~~~~~~   89 (131)
T d1vk6a2          15 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY-VTSQPWPF----PQSLMTAFMAEYDSGDIV   89 (131)
T ss_dssp             EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEEEEEET----TEEEEEEEEEEEEECCCC
T ss_pred             EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeE-EEEeccCc----CceEEEEEEEEEcCCccc
Confidence            7999988754  6799999999999999999999999999999887766 66554432    234556777766543333


Q ss_pred             CCcCcceeEEEEecCCCcc
Q 031232          142 WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       142 ~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....+..+++||+++++..
T Consensus        90 ~~~~E~~~~~W~~~~el~~  108 (131)
T d1vk6a2          90 IDPKELLEANWYRYDDLPL  108 (131)
T ss_dssp             CCTTTEEEEEEEETTSCCS
T ss_pred             CCCccEEEEEEEcHHHHhh
Confidence            3334568999999998754

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3e-21  Score=140.04  Aligned_cols=107  Identities=18%  Similarity=0.045  Sum_probs=77.6

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeE
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE  114 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~  114 (163)
                      +|+++.+++++.             ++|||++|+.+   |.|.+|||++++|||+.+||+||++||||+++..... ++.
T Consensus         4 ~r~~~~v~i~~~-------------~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~   69 (156)
T d1irya_           4 SRLYTLVLVLQP-------------QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQ   69 (156)
T ss_dssp             CEEEEEECEECS-------------SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCE-EEE
T ss_pred             cEEEEEEEEEEC-------------CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEE-EEE
Confidence            466677666654             37999998764   7899999999999999999999999999999877666 776


Q ss_pred             EEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          115 WNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       115 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +.+...........++|.+....  ......++.+.+|+++++...
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ee~~~~W~~~~~l~~  113 (156)
T d1irya_          70 IVFEFVGEPELMDVHVFCTDSIQ--GTPVESDEMRPCWFQLDQIPF  113 (156)
T ss_dssp             EEEEETTCSCEEEEEEECCCCBC--SCCCCCSSEEEEEEETTCCCS
T ss_pred             EEEEcCCCCEEEEEEEEEEEeec--CcccCCchhheEEeEHHHCCc
Confidence            66666555544545555443222  122223346789999998764

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.86  E-value=2.9e-21  Score=146.13  Aligned_cols=116  Identities=19%  Similarity=0.185  Sum_probs=85.4

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece-ee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LL  112 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l  112 (163)
                      .|.++|++|||+.+.+       .+..+|||++|+..   |.|.||||++++|||+.+||.||++||||+.+..... .+
T Consensus        35 ~P~v~vd~vi~~~~~~-------~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~  107 (202)
T d2fmla2          35 KPSLTVDMVLLCYNKE-------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  107 (202)
T ss_dssp             CCEEEEEEEEEEEETT-------TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             CCccEEEEEEEEEecC-------CCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeee
Confidence            6789999999987521       24579999999764   7899999999999999999999999999998754432 14


Q ss_pred             eEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      +++....++...+.+.++|.+.+.... ..+.++..+++||+++++..
T Consensus       108 ~~~~~~~r~~~~~~i~~~~~~~~~~~~-~~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2         108 HSFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             EEECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEEEEEETT
T ss_pred             eecccCCccccceEEEEEEEEEeCCCC-cCCCcceeeEEEEeHHHCcc
Confidence            444433333444566667777665432 33445568899999987653

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.86  E-value=2.6e-22  Score=144.87  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcC-CCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      .++|||+++.           +..+|||+++.. .+.|.||||++++|||+.+||+||++||||+++..... ...+...
T Consensus         3 ~v~Gaii~~~-----------~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~-~~~~~~~   70 (151)
T d2a6ta2           3 PVRGAIMLDM-----------SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN-PNEFIDM   70 (151)
T ss_dssp             CEEEEEEBCS-----------SSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCC-TTCEEEE
T ss_pred             cEEEEEEEEC-----------CCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeee-cceEEee
Confidence            3678999874           345799999855 47899999999999999999999999999998764433 2222222


Q ss_pred             eCCCCceEEEEEEEEEecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          119 SRAHNTDYQGYMFPLLVQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       119 ~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ... .. ...++|...+....  ...+..|..+++|++++++..
T Consensus        71 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~  112 (151)
T d2a6ta2          71 TIR-GQ-NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPT  112 (151)
T ss_dssp             EET-TE-EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTT
T ss_pred             ccc-Cc-eEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhh
Confidence            221 11 22222332232222  223344568899999998765

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.84  E-value=1e-20  Score=136.60  Aligned_cols=97  Identities=18%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             ceEEEEEEEcCC-------CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEE
Q 031232           62 DLEVLVISSQKG-------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL  134 (163)
Q Consensus        62 ~~~vLLv~r~~~-------~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~  134 (163)
                      +++|||++|+..       |.|.||||++++|||+.+||+||++||||+++..... ++.+.+..... .....++|.+.
T Consensus        23 ~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-i~~~~~~~~~~-~~~~~~~~~~~  100 (158)
T d1sjya_          23 RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-LGAYLGRFPDG-VLILRHVWLAE  100 (158)
T ss_dssp             TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-EEEEEEECTTS-CEEEEEEEEEE
T ss_pred             CCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEE-EEEEEEECCCC-CEEEEEEEEEE
Confidence            347999998642       5799999999999999999999999999999988777 88776655432 33445566665


Q ss_pred             ecccc--CCCCcCcceeEEEEecCCCcc
Q 031232          135 VQDQL--AEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       135 ~~~~~--~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .....  ...++++..+++|++++++..
T Consensus       101 ~~~~~~~~~~~~~E~~~~~w~~~~el~~  128 (158)
T d1sjya_         101 PEPGQTLAPAFTDEIAEASFVSREDFAQ  128 (158)
T ss_dssp             ECSSCCCCCCCCSSEEEEEEECHHHHHH
T ss_pred             EcCCcccCCCCCcceEEEEEEEHHHHhh
Confidence            44322  233345568999999987643

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7e-21  Score=138.04  Aligned_cols=111  Identities=18%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC---CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece-ee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE-LL  112 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~---~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~-~l  112 (163)
                      .|.++|++||++.            +++|||++|+..   |.|.+|||++++|||+++||+||++||||+++..... .+
T Consensus        16 ~p~~~v~~vi~~~------------~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~   83 (160)
T d1ryaa_          16 TPLVSLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFY   83 (160)
T ss_dssp             SCEEEEEEEEECT------------TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEE
T ss_pred             CCEEEEEEEEEeC------------CCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEE
Confidence            4567788777753            347999998763   7899999999999999999999999999999765332 24


Q ss_pred             eEEEEeeCC------CCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          113 GEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       113 ~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      +.+.+....      ...++...+|.+.........++.+..+++|++++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~  136 (160)
T d1ryaa_          84 GVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALL  136 (160)
T ss_dssp             EEEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHH
T ss_pred             EEEEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhh
Confidence            444443221      11244556666666554444445556889999998764

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.84  E-value=5.9e-21  Score=136.39  Aligned_cols=109  Identities=24%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEe
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK  118 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~  118 (163)
                      |..|++|+++.+           + ++||+.++..+.|.||||++++|||+.+||+||++||||+++..... ++.+...
T Consensus        17 r~~~~~vi~~~~-----------~-~~lll~~~~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~   83 (147)
T d2azwa1          17 RYAAYIIVSKPE-----------N-NTMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCY-LGEADEY   83 (147)
T ss_dssp             CCEEEEECEEGG-----------G-TEEEEEECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEEEE
T ss_pred             CCeEEEEEEECC-----------C-CEEEEEEcCCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeE-EEEEEEE
Confidence            567778887653           2 24445555668999999999999999999999999999999887666 6655432


Q ss_pred             e--CCCCc--eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCccC
Q 031232          119 S--RAHNT--DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       119 ~--~~~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .  .....  ....++|.+..... ...+.++..+++|++++++...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W~~~~e~~~~  129 (147)
T d2azwa1          84 FYSNHRQTAYYNPGYFYVANTWRQ-LSEPLERTNTLHWVAPEEAVRL  129 (147)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEE-CSSCC-CCSEEEEECHHHHHHH
T ss_pred             eeeccCCceEEEEEEEEEEEeccc-cCCCCccceEEEEEEHHHHHHH
Confidence            2  22222  23345565544333 2333445678999999987654

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.83  E-value=1e-20  Score=138.38  Aligned_cols=64  Identities=30%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             cCCCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           34 YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        34 ~~~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      +.+++|..||+||++.            +++|||++|... |.|.+|||+||+|||+++||+||++||||+.+....
T Consensus         9 ~~~~yR~~Vg~vI~n~------------~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~   73 (165)
T d1jkna_           9 PPEGYRRNVGICLMNN------------DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI   73 (165)
T ss_dssp             CCSSEEEEEEEEEECT------------TSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEE
T ss_pred             CCCCccccEEEEEEeC------------CCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhcccccccc
Confidence            3346688999988753            347999999765 789999999999999999999999999999976543

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.83  E-value=4.9e-20  Score=133.22  Aligned_cols=96  Identities=22%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             CceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232           61 EDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (163)
Q Consensus        61 ~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (163)
                      ++.++||++|...    +.|.||||++++|||+++||.||++||||+.+..... ++.+.+.... ..++..++|.+...
T Consensus        19 ~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~   96 (155)
T d2b06a1          19 ETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VGIKNWPLDT-GGRYIVICYKATEF   96 (155)
T ss_dssp             TTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EEEEEEECTT-SCEEEEEEEEECEE
T ss_pred             CCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEE-EEEEEeecCC-CCeEEEEEEEEEec
Confidence            5568999887643    5699999999999999999999999999999887766 7766655433 33455666666433


Q ss_pred             cccCCCCcCcceeEEEEecCCCcc
Q 031232          137 DQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       137 ~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ...  ....+..+++|++++++..
T Consensus        97 ~~~--~~~~e~~~~~W~~~~el~~  118 (155)
T d2b06a1          97 SGT--LQSSEEGEVSWVQKDQIPN  118 (155)
T ss_dssp             EEC--CCCBTTBEEEEEEGGGGGG
T ss_pred             CCc--cCCCchheEEEEEHHHhcc
Confidence            222  2233457899999998754

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-20  Score=132.82  Aligned_cols=120  Identities=21%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEE-
Q 031232           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW-  115 (163)
Q Consensus        38 ~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~-  115 (163)
                      +..++|+|+|+..   -..+.+++..++||+++..+ +.|.+|||++++|||+.+||.||++||||+....... ++.+ 
T Consensus         7 ~~~~~g~i~f~~~---~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~   82 (153)
T d1xsba_           7 ALRACGLIIFRRC---LIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI-IEGFK   82 (153)
T ss_dssp             SEEEEEEEEEEEC---SSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEE-CSSCC
T ss_pred             chheeEEEEEecc---ccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeee-eccce
Confidence            4567899999742   12344568899999998764 6799999999999999999999999999999765443 3321 


Q ss_pred             -EEeeCCCCceEEEEEEEEEeccc-cCCCCcCcceeEEEEecCCCccC
Q 031232          116 -NFKSRAHNTDYQGYMFPLLVQDQ-LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       116 -~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                       ..............+|.+..... ....+..+..+++|++++++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  130 (153)
T d1xsba_          83 RELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQL  130 (153)
T ss_dssp             EEEEEESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHH
T ss_pred             eeecccccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHh
Confidence             12222223334444454444432 33344455689999999987654

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.82  E-value=4.4e-21  Score=137.12  Aligned_cols=58  Identities=24%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeece
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECE  110 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~  110 (163)
                      +++++|++.++             +|||++|...|.|.||||++++|||+.+||+||++||||+++.....
T Consensus         2 v~a~~vi~~d~-------------kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~   59 (152)
T d1k2ea_           2 IVTSGVLVENG-------------KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF   59 (152)
T ss_dssp             EEEEEECEETT-------------EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC
T ss_pred             EEEEEEEEECC-------------EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEE
Confidence            46677777642             79999998889999999999999999999999999999999876554

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.8e-19  Score=134.49  Aligned_cols=95  Identities=18%  Similarity=0.035  Sum_probs=66.4

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEE-eccc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLL-VQDQ  138 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~-~~~~  138 (163)
                      ++||+++.+.    ..|.||||++|+||||++||+||++||||+.+..... ++.+.......+. . .++|.+. ....
T Consensus        60 ~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~-l~~~~~~~g~~~~-~-~~~~~a~~~~~~  136 (186)
T d1vhza_          60 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTF-LKKLSMAPSYFSS-K-MNIVVAQDLYPE  136 (186)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEE-EEEEECCTTTCCC-E-EEEEEEEEEEEC
T ss_pred             EEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhcccccccee-cceeeccccccce-E-EEEEEEEecccc
Confidence            6999987544    2499999999999999999999999999999887777 7766433222222 2 2334333 3222


Q ss_pred             cCCCCcCcceeEEEEecCCCccC
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      .....+.|..+..|++++++...
T Consensus       137 ~~~~de~E~~~~~~~~~~e~~~~  159 (186)
T d1vhza_         137 SLEGDEPEPLPQVRWPLAHMMDL  159 (186)
T ss_dssp             CCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             cCCCCCCcEEEEEEEeHHHHHHH
Confidence            22233445578999999998764

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.6e-19  Score=125.38  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             eEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEeccc
Q 031232           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ  138 (163)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  138 (163)
                      ++|||++|...    |.|.||||++++|||+.+||.||++||||+.+..... ++.+.+...  ......++|.+.....
T Consensus        16 ~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~   92 (129)
T d1puna_          16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSL-FEKLEYEFP--DRHITLWFWLVERWEG   92 (129)
T ss_dssp             SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCC-SEEEEEECS--SEEEEEEEEECCCCSS
T ss_pred             CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCcccccee-eeEEeeccc--ccceeEEEEEEeeccC
Confidence            47999987543    6899999999999999999999999999999887666 766665543  2345556666543322


Q ss_pred             cCCCCcCcceeEEEEecCCCcc
Q 031232          139 LAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       139 ~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      . .. ..+..+++|+++++...
T Consensus        93 ~-~~-~~E~~~~~W~~~~el~~  112 (129)
T d1puna_          93 E-PW-GKEGQPGEWMSLVGLNA  112 (129)
T ss_dssp             C-CC-TTSSSCCEEECGGGCCT
T ss_pred             c-CC-CCccceEEEEEHHHccc
Confidence            1 11 23456899999998643

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.77  E-value=2e-19  Score=131.03  Aligned_cols=108  Identities=13%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeeceee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL  112 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l  112 (163)
                      ..+|++++++.            ++++||.+|..     .|.|.+| ||++++|||+.+||+||++|||||++..... +
T Consensus        28 ~~~v~~~v~~~------------~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~-~   94 (162)
T d2o5fa1          28 VRVVNAFLRNS------------QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSW-R   94 (162)
T ss_dssp             SEEEEEEEECT------------TSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEE-E
T ss_pred             EEEEEEEEEcC------------CCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEE-E
Confidence            35666666643            34688877643     2789776 9999999999999999999999999776554 4


Q ss_pred             eEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCCcc
Q 031232          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..+.+...........++|.+......... +.+..+++|++++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ev~~~~W~~~eel~~  141 (162)
T d2o5fa1          95 PLASFSPFQTTLSSFMCVYELRSDATPIFN-PNDISGGEWLTPEHLLA  141 (162)
T ss_dssp             EEEEECTTTSSCSSEEEEEEEECSSCCCCC-TTTCSEEEEECHHHHHH
T ss_pred             EEEEeccccccceEEEEEEEEecCCCccCC-hhHeeEEEEeeHHHHHH
Confidence            444443333333334566766655433322 33457999999988654

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=3.6e-19  Score=129.68  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=59.6

Q ss_pred             EEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecccc
Q 031232           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL  139 (163)
Q Consensus        64 ~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  139 (163)
                      ++||+++.+.    ..|.||||++|+|||+++||+||++||||+.+.. .. ++.+... ..... ...++|.+......
T Consensus        36 ~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~-~~-l~~~~~~-~g~~~-~~~~~f~a~~~~~~  111 (158)
T d1v8ya_          36 RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDL-TY-LFSYFVS-PGFTD-EKTHVFLAENLKEV  111 (158)
T ss_dssp             EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEE-EE-EEEEESC-TTTBC-CEEEEEEEEEEEEC
T ss_pred             EEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCccee-ee-ecceecC-CCcce-EEEEEEEEcccccc
Confidence            6999987543    4699999999999999999999999999998764 33 4444222 22111 22344554333222


Q ss_pred             CCC-CcCcceeEEEEecCCCcc
Q 031232          140 AEW-PEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       140 ~~~-~~~e~~~~~W~~~~e~~~  160 (163)
                      ... .+.|..++.|++++++.+
T Consensus       112 ~~~~d~~E~~ev~w~~~~e~~~  133 (158)
T d1v8ya_         112 EAHPDEDEAIEVVWMRPEEALE  133 (158)
T ss_dssp             C--------CEEEEECHHHHHH
T ss_pred             ccCCCCCeeEEEEEEEHHHHHH
Confidence            222 233457899999998764

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.76  E-value=7.1e-19  Score=131.36  Aligned_cols=110  Identities=19%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             CCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      ..+.++.+|++..          +++.+|||++|...     |.|+||||++|+|||+.+||+||++|||||....... 
T Consensus        29 ~~r~aaVlv~~~~----------~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~-   97 (187)
T d1nqza_          29 HYRRAAVLVALTR----------EADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTL-   97 (187)
T ss_dssp             -CEEEEEEEEEES----------SSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEE-
T ss_pred             CCCccEEEEEEEE----------CCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEE-
Confidence            3456666666654          24568999998743     8899999999999999999999999999999877666 


Q ss_pred             eeEEEEeeCCCCceEEEEEEEEEeccc-c-CCCCcCcceeEEEEecCCCc
Q 031232          112 LGEWNFKSRAHNTDYQGYMFPLLVQDQ-L-AEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       112 l~~~~~~~~~~~~~~~~~~f~~~~~~~-~-~~~~~~e~~~~~W~~~~e~~  159 (163)
                      +|.+.......+  +.++.|.+.+... . ......|..++.|++++++.
T Consensus        98 lg~l~~~~~~~~--~~V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~  145 (187)
T d1nqza_          98 LGELDDVFTPVG--FHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELR  145 (187)
T ss_dssp             EEECCCEEETTT--EEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHH
T ss_pred             eecccceeeccc--cEEEEEEEEECCccccccccCCcceEEEeccHHHHh
Confidence            776543333222  3445555555332 2 22234456789999987653

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=5.4e-18  Score=123.25  Aligned_cols=95  Identities=24%  Similarity=0.297  Sum_probs=68.8

Q ss_pred             ceEEEEEEEcCC-----CCEEec-CcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEe
Q 031232           62 DLEVLVISSQKG-----KGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV  135 (163)
Q Consensus        62 ~~~vLLv~r~~~-----~~W~lP-GG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~  135 (163)
                      +++|||.+|...     |.|.+| ||++++|||+++||+||++|||||....... ++.+.+...  ......++|.+..
T Consensus        41 ~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~  117 (161)
T d2fkba1          41 MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE-HGQFYFEDK--NCRVWGALFSCVS  117 (161)
T ss_dssp             SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE-EEEEEEEET--TEEEEEEEEEEEC
T ss_pred             CCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEE-EEEEEeecC--CcEEEEEEEEEEE
Confidence            347998887542     789886 9999999999999999999999999766565 666655543  2344556666654


Q ss_pred             ccccCCCCcCcceeEEEEecCCCcc
Q 031232          136 QDQLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       136 ~~~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ....... ..|..+++|++++++..
T Consensus       118 ~~~~~~~-~~Ev~~~~w~~~~el~~  141 (161)
T d2fkba1         118 HGPFALQ-EDEVSEVCWLTPEEITA  141 (161)
T ss_dssp             CCCCCCC-TTTEEEEEEECHHHHHT
T ss_pred             CCCCcCC-hhHeeEEEEEeHHHHhh
Confidence            4433332 34568899999988654

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-18  Score=125.71  Aligned_cols=107  Identities=13%  Similarity=0.074  Sum_probs=70.4

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcC-----CCCEEe-cCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeee
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLG  113 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~-----~~~W~l-PGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~  113 (163)
                      .++++++++.            ++++||.+|..     +|.|.+ |||++++|||+.+||+||++|||||++........
T Consensus         3 ra~~v~i~n~------------~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~   70 (153)
T d1hzta_           3 LAFSSWLFNA------------KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYP   70 (153)
T ss_dssp             ECEEEEEECT------------TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEET
T ss_pred             eEEEEEEEEC------------CCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceec
Confidence            3566777754            34799998853     278987 99999999999999999999999999765443122


Q ss_pred             EEEEeeCCCCc---eEEEEEEEEEeccccCCCCcCcceeEEEEecCCCc
Q 031232          114 EWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMPV  159 (163)
Q Consensus       114 ~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~~  159 (163)
                      .+.|.......   ....++|.+.........+ +|..+++|+++++..
T Consensus        71 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ev~~~~W~~~~el~  118 (153)
T d1hzta_          71 DFRYRATDPSGIVENEVCPVFAARTTSALQIND-DEVMDYQWCDLADVL  118 (153)
T ss_dssp             TCEEEEECTTSCEEEEECCEEEEEBCSCCCCCT-TTEEEEEEECHHHHH
T ss_pred             cccccccccccccceeEEEEEEEeeCCCccCCh-hheeEEEEeeHHHHH
Confidence            23332222221   2333455555443333322 356899999998754

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=1.9e-18  Score=130.49  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=63.1

Q ss_pred             ceEEEEEEEcCC--C--CEEecCcccC-CCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEec
Q 031232           62 DLEVLVISSQKG--K--GMLFPKGGWE-IDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ  136 (163)
Q Consensus        62 ~~~vLLv~r~~~--~--~W~lPGG~ve-~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~  136 (163)
                      +++|||+++.+.  +  .|.||+|++| +||++++||+||++||||+.+..... ++.+........  ...++|.+...
T Consensus        49 ~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~-l~~~~~~~g~~~--~~~~~fla~~~  125 (202)
T d1mqea_          49 NGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LVDLDTAPGFSD--ESVRVYLATGL  125 (202)
T ss_dssp             TSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEECSCTTTBC--CCEEEEEEEEE
T ss_pred             CCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceE-eeeeeccCccCC--cEEEEEEEEec
Confidence            357999987543  2  5999999999 79999999999999999999887777 776543322222  23344444322


Q ss_pred             cc--c-CCCCcCcceeEEEEecCCCccC
Q 031232          137 DQ--L-AEWPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       137 ~~--~-~~~~~~e~~~~~W~~~~e~~~~  161 (163)
                      ..  . ...++.+..++.|++++++...
T Consensus       126 ~~~~~~~~~~eee~i~v~w~~~~e~~~~  153 (202)
T d1mqea_         126 REVGRPEAHHEEADMTMGWYPIAEAARR  153 (202)
T ss_dssp             EECCC----------CEEEEEHHHHHHH
T ss_pred             cccCCCCCCCccceEEEEEEEHHHHHHH
Confidence            21  1 1222233357999999987654

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.9e-17  Score=127.09  Aligned_cols=126  Identities=17%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             CCeEEEEEEEEEeecCccc---c--cccCCceEEEEEEEcCCCCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeecee
Q 031232           37 GRRQVVGCIPYRYKCVKQS---L--DINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL  111 (163)
Q Consensus        37 ~~~~~v~~ii~~~~~~~~~---~--~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~  111 (163)
                      +|..+++.||-|-+-+.+.   .  ......++||||+|+..+.|.||||+|++||++.+||+||+.||||+.+......
T Consensus       108 GpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~  187 (292)
T d1q33a_         108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE  187 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSH
T ss_pred             CccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccccccc
Confidence            8899999999886422221   1  1122347899999998899999999999999999999999999999986432110


Q ss_pred             ----------------eeEEE-Eee---CCCCceEEEEEEEEEeccc-----cCCCCcCcceeEEEEecCCCccCC
Q 031232          112 ----------------LGEWN-FKS---RAHNTDYQGYMFPLLVQDQ-----LAEWPEKNVRSRKWVCTFMPVTCF  162 (163)
Q Consensus       112 ----------------l~~~~-~~~---~~~~~~~~~~~f~~~~~~~-----~~~~~~~e~~~~~W~~~~e~~~~~  162 (163)
                                      ...+. +..   ..........+|.+.....     ....+.++..+++|++++++..++
T Consensus       188 ~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~  263 (292)
T d1q33a_         188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLY  263 (292)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCS
T ss_pred             ccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccch
Confidence                            01111 111   1112244555666654432     112334556899999999987654

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.7e-17  Score=122.13  Aligned_cols=108  Identities=19%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC-------C--CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-------K--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~-------~--~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      .-+|++|++..           +..+++|+++.+.       +  .|++|+|.+|+||||++||+||++||||+.+....
T Consensus        57 ~~~v~vl~~~~-----------~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~  125 (209)
T d1g0sa_          57 GHAAVLLPFDP-----------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTK  125 (209)
T ss_dssp             CCEEEEEEEET-----------TTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEE
T ss_pred             CCEEEEEEEEe-----------cCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhccccccee
Confidence            35566666653           3457999988653       1  37999999999999999999999999999987777


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccccCC-----CCcCcceeEEEEecCCCcc
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-----WPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~e~~~~~W~~~~e~~~  160 (163)
                      . ++.+... .+. .....++|.+.+......     ..+.|..++.|++++++..
T Consensus       126 ~-l~~~~~s-pg~-~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~  178 (209)
T d1g0sa_         126 P-VLSFLAS-PGG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ  178 (209)
T ss_dssp             E-EEEEESC-TTT-BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred             e-ccccccC-Ccc-cCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHH
Confidence            6 7765332 222 224456677765432111     1223346899999998754

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.56  E-value=2.9e-14  Score=106.68  Aligned_cols=123  Identities=13%  Similarity=-0.018  Sum_probs=75.2

Q ss_pred             CCCeEEEEEEEEEeecCcccccccCCceEEEEEEEcCCCCEEecCcccCCCCC-HHHHHHHHHHHHhCCeeeeece-eee
Q 031232           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDES-IQEAALRETIEEAGVTGIVECE-LLG  113 (163)
Q Consensus        36 ~~~~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~~~W~lPGG~ve~gEs-~~eaA~REl~EEtGl~~~~~~~-~l~  113 (163)
                      .+.|.++.++++..+...-...++ .+..||+ +++.+|.|.||||++++||+ +++||.||++||||+.+..... ...
T Consensus        17 ~g~r~a~~~~~~~~~~~~~~~~~~-~~~~vl~-~~r~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~   94 (196)
T d1u20a1          17 EGYKHACHALLHAPSQAKLFDRVP-IRRVLLM-MMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDD   94 (196)
T ss_dssp             SSCEEEEEEEEEEECCCEETTTEE-CCEEEEE-EEETTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGG
T ss_pred             CCcceEEEEEEEcCCCceEEEEec-CCcEEEE-EEecCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeE
Confidence            367888888888764211011122 2344555 45567899999999999996 6789999999999998765443 022


Q ss_pred             EEEEeeCCCCceEEEEEEEEEecccc---------C-CCCcCcceeEEEEecCCCcc
Q 031232          114 EWNFKSRAHNTDYQGYMFPLLVQDQL---------A-EWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       114 ~~~~~~~~~~~~~~~~~f~~~~~~~~---------~-~~~~~e~~~~~W~~~~e~~~  160 (163)
                      .+.............++|.+.+....         . .....+..++.|+++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1          95 YRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             EEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            22222222333455667776654210         1 11122347899999887643

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=7e-15  Score=109.53  Aligned_cols=107  Identities=14%  Similarity=-0.028  Sum_probs=70.4

Q ss_pred             EEEEEEEEEeecCcccccccCCceEEEEEEEcCC--------C--CEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeec
Q 031232           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--------K--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC  109 (163)
Q Consensus        40 ~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~--------~--~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~  109 (163)
                      -+|++|++..           +..+|||+++.+.        +  .|.+|||.++ ||+|++||+||+.||||+.+....
T Consensus        44 ~aV~Vl~~~~-----------~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~  111 (189)
T d1viua_          44 NGATILLYNT-----------KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVR  111 (189)
T ss_dssp             CEEEEEEEET-----------TTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCE
T ss_pred             CEEEEEEEEc-----------CCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEE
Confidence            4666677653           3457999988542        2  3678999988 667899999999999999987767


Q ss_pred             eeeeEEEEeeCCCCceEEEEEEEEEeccccCC----CCcCcceeEEEEecCCCccC
Q 031232          110 ELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE----WPEKNVRSRKWVCTFMPVTC  161 (163)
Q Consensus       110 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~~~e~~~~~W~~~~e~~~~  161 (163)
                      . ++.+ +...+.. ....++|.+........    ..+.|..++.|++++++..+
T Consensus       112 ~-lg~~-~~spG~~-~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~  164 (189)
T d1viua_         112 K-LFEL-YMSPGGV-TELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEM  164 (189)
T ss_dssp             E-EEEE-ESCTTTB-CCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHH
T ss_pred             E-ccee-ecCcccc-CceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHH
Confidence            7 7765 3333222 23456777765432211    12334578999999987643

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.51  E-value=1.1e-13  Score=96.34  Aligned_cols=90  Identities=12%  Similarity=0.005  Sum_probs=61.3

Q ss_pred             ceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeeeeeceeeeEEEEeeCCCCceEEEEEEEEEecc
Q 031232           62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD  137 (163)
Q Consensus        62 ~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~  137 (163)
                      ++++||.+|...    |.|+||||.++++|+ .+++.||++||+|+++..... ++.+.+..+.  ......+|.+....
T Consensus        15 ~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~-l~~~~H~fsh--~~~~~~~~~~~~~~   90 (127)
T d1rrqa2          15 EGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEP-IVSFEHAFSH--LVWQLTVFPGRLVH   90 (127)
T ss_dssp             SSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSC-CEEEEEECSS--EEEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccc-cccceEecCC--eEEEEEEEEEEECC
Confidence            457998887653    679999999998777 789999999999999988777 7776655442  23455667766543


Q ss_pred             ccCCCCcCcceeEEEEecCCCcc
Q 031232          138 QLAEWPEKNVRSRKWVCTFMPVT  160 (163)
Q Consensus       138 ~~~~~~~~e~~~~~W~~~~e~~~  160 (163)
                      ..   +  +..+.+|+++++...
T Consensus        91 ~~---~--~~~~~~Wv~~~el~~  108 (127)
T d1rrqa2          91 GG---P--VEEPYRLAPEDELKA  108 (127)
T ss_dssp             CS---C--CCTTEEEEEGGGGGG
T ss_pred             CC---c--cccceEEeeHHHHhH
Confidence            21   1  224689999998654

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.3e-11  Score=82.81  Aligned_cols=106  Identities=15%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             eEEEEEEEEEeecCcccccccCCceEEEEEEEcCC----CCEEecCcccCCCCCHHHHHHHHHHHHhCCeee--eeceee
Q 031232           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELL  112 (163)
Q Consensus        39 ~~~v~~ii~~~~~~~~~~~~~~~~~~vLLv~r~~~----~~W~lPGG~ve~gEs~~eaA~REl~EEtGl~~~--~~~~~l  112 (163)
                      +..+.+|+.+..         ..+++|||.+|...    |.|+||+|.++.+|++.++|.|+..+|.+....  .... +
T Consensus        12 ~~~~~~vv~~~~---------~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~-~   81 (142)
T d1x51a1          12 ESSATCVLEQPG---------ALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRH-L   81 (142)
T ss_dssp             EEEEEEEEEEEC---------SSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEE-C
T ss_pred             EEEEEEEEEecC---------CCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeee-e
Confidence            455555555543         24568999998654    789999999999999998888776666554432  2223 4


Q ss_pred             eEEEEeeCCCCceEEEEEEEEEeccccCCCCcCcceeEEEEecCCC
Q 031232          113 GEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWVCTFMP  158 (163)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~e~  158 (163)
                      +.+.+..+  ......++|.+.+.......  .+..+.+|+++++.
T Consensus        82 ~~v~H~fs--H~~~~~~v~~~~~~~~~~~~--~~~~~~~W~~~~el  123 (142)
T d1x51a1          82 GEVVHTFS--HIKLTYQVYGLALEGQTPVT--TVPPGARWLTQEEF  123 (142)
T ss_dssp             CCBCCBCS--SCEEEEEEEEEECSSCCCCC--CCCTTEEEEEHHHH
T ss_pred             ccceeccC--CcceEEEEEEEEEeCCCccc--ccCccCEEeeHHHc
Confidence            44433322  23455677777766432221  23467999998764