Citrus Sinensis ID: 031237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MKQRMTTEFCKMLLCSLMMITLGManarhpddwlhahngiriqmglpalawdDKLADYAKWYAnerrgdcrlehsdtpfgenlawadydmkgSEAIQMWIDEvkdydynsntcrvpdmcghYTQVVWRNTARvgcarvkchngntfftcnydppgnfvgakpf
Flexible Loop (DISEMBL)
MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNgntfftcnydppgNFVGAKPF
Low Complexity Region (SEG)
MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF
Disordered region (IsUnstruct)
******TEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNF******
Disordered Region (DISOPRED)
******TEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVG*KPF
Disordered Region (DISEMBL)
MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF
Disordered Region (DISPRO)
*KQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P11670	177	Basic form of pathogenesi	N/A	no	0.957	0.881	0.496	8e-42
P33154	161	Pathogenesis-related prot	no	no	0.950	0.962	0.445	6e-40
P09042	168	Pathogenesis-related prot	N/A	no	1.0	0.970	0.434	1e-39
P07053	168	Pathogenesis-related prot	N/A	no	0.975	0.946	0.445	6e-39
Q08697	175	Pathogenesis-related prot	N/A	no	0.901	0.84	0.5	8e-39
P08299	168	Pathogenesis-related prot	N/A	no	0.809	0.785	0.526	1e-37
Q05968	164	Pathogenesis-related prot	N/A	no	0.822	0.817	0.503	3e-37
Q41359	167	Pathogenesis-related prot	N/A	no	0.822	0.802	0.5	3e-37
P35792	164	Pathogenesis-related prot	N/A	no	0.822	0.817	0.496	9e-37
Q04108	159	Pathogenesis-related leaf	N/A	no	0.920	0.943	0.470	5e-36

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score =  169 bits (428), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 112/159 (70%), Gaps = 3/159 (1%)

Query: 5   MTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYAN 64
           +TT     +  ++++ +    N+  P D+L+ HN  R Q+G+  + WD++LA YA+ YAN
Sbjct: 4   LTTIVACFITFAILIHSSKAQNS--PQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYAN 61

Query: 65  ERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQ 124
           +R GDC + HS  P+GENLA A   +  + A++MW+DE + YDYNSN+C V  +CGHYTQ
Sbjct: 62  QRIGDCGMIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSC-VGGVCGHYTQ 120

Query: 125 VVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           VVWRN+ R+GCARV+ +NG  F TCNYDPPGNF+G +PF
Sbjct: 121 VVWRNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159

Probably involved in the defense reaction of plants against pathogens.
Nicotiana tabacum (taxid: 4097)

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 7   TEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANER 66
           + F  + +  +  + L       P D+L  HN  R  +G+  + WD+++A YA+ YA + 
Sbjct: 7   SRFLIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQL 66

Query: 67  RGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVV 126
           RG+CRL HS  P+GENLAW   D+ G  A+ MW+ E  +Y+Y +NTC    +CGHYTQVV
Sbjct: 67  RGNCRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTCN--GVCGHYTQVV 124

Query: 127 WRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           WR + R+GCA+V+C+NG T  +CNYDP GN+V  KP+
Sbjct: 125 WRKSVRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

Partially responsible for acquired pathogen resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPD----DWLHAHNGIRIQMGLPALAWDDKLA 56
           M+  + ++     L S +++ L ++++ H      D+L AHN  R  +G+  L WDD++A
Sbjct: 1   MEFVLFSQMSSFFLVSTLLLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVA 60

Query: 57  DYAKWYANERRGDCRLEHSDTPFGENLAWADYD-MKGSEAIQMWIDEVKDYDYNSNTCRV 115
            YA+ YA++   DC L HS   +GENLAW   D +  ++A++MW++E + Y ++SNTC  
Sbjct: 61  AYAQNYASQLAADCNLVHSHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQ 120

Query: 116 PDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
             +CGHYTQVVWRN+ RVGCARV+C+NG    +CNYDPPGN +G  P+
Sbjct: 121 GQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score =  159 bits (403), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 106/164 (64%), Gaps = 5/164 (3%)

Query: 5   MTTEFCKMLLCSLMMITLGMANARHPD----DWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           + ++     L S +++ L ++++ H      D+L AHN  R  +G+  L WD+ +A YA+
Sbjct: 5   LFSQMPSFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQ 64

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYD-MKGSEAIQMWIDEVKDYDYNSNTCRVPDMC 119
            Y ++   DC L HS   +GENLA    D M  ++A++MW+DE + YD++SNTC    +C
Sbjct: 65  NYVSQLAADCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVC 124

Query: 120 GHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           GHYTQVVWRN+ RVGCARVKC+NG    +CNYDPPGN +G  P+
Sbjct: 125 GHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q08697|PR1A_SOLLC Pathogenesis-related protein 1A1 OS=Solanum lycopersicum PE=2 SV=1

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 1/148 (0%)

Query: 12  MLLCSLMMITLGMANARHP-DDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDC 70
            + C +  I    + A+ P +++L+AHN  R ++G+  + WDD LA YA+ YAN+R  DC
Sbjct: 6   FVACFITFIIFHSSQAQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDC 65

Query: 71  RLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNT 130
            + HSD P+GENLA A   +  + A++MW DE + YDYNSNTC    +CGHYTQVVWR +
Sbjct: 66  GMIHSDGPYGENLAAAFPQLNAAGAVKMWDDEKQWYDYNSNTCAPGKVCGHYTQVVWRKS 125

Query: 131 ARVGCARVKCHNGNTFFTCNYDPPGNFV 158
            R+GCARV+C++G  F TCNYDPPGN++
Sbjct: 126 VRLGCARVRCNSGWVFITCNYDPPGNYI 153

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 94/133 (70%), Gaps = 1/133 (0%)

Query: 32  DWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD-M 90
           D+L AHN  R  +G+  L WDD++A YA+ YA++   DC L HS   +GENLA    D M
Sbjct: 36  DYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAEGSGDFM 95

Query: 91  KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCN 150
             ++A++MW+DE + YD++SNTC    +CGHYTQVVWRN+ RVGCARV+C+NG    +CN
Sbjct: 96  TAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCN 155

Query: 151 YDPPGNFVGAKPF 163
           YDPPGN+ G  P+
Sbjct: 156 YDPPGNYRGESPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 92/137 (67%), Gaps = 3/137 (2%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAW--AD 87
           P D++  HN  R  +G+ A++W  KL  +A+ YAN+R  DC+L+HS  P+GEN+ W  A 
Sbjct: 28  PQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPYGENIFWGSAG 87

Query: 88  YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTF 146
            D K S+A+  W+ E KDYDY SNTC    +CGHYTQVVWR +  +GCARV C+N    F
Sbjct: 88  ADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

Query: 147 FTCNYDPPGNFVGAKPF 163
            TCNY+P GN +G KP+
Sbjct: 148 ITCNYEPRGNIIGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 2/136 (1%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTP-FGENLAWAD- 87
           P D++ AHN  R  + +  + WD+ +A +A+ YA  R GDCRL HS  P +GENLA+   
Sbjct: 32  PQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRYGENLAFGSG 91

Query: 88  YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFF 147
           +++ G  A+ MW+ E  DY+ N+NTC    +CGHYTQVVWRN+ R+GCARV+C+NG  F 
Sbjct: 92  FELTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFI 151

Query: 148 TCNYDPPGNFVGAKPF 163
           TCNY PPGN+ G +P+
Sbjct: 152 TCNYSPPGNYAGQRPY 167

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|P35792|PR12_HORVU Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1

 Score =  152 bits (384), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 3/137 (2%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAW--AD 87
           P D++  HN  R  +G+ A++W  KL  +A+ YAN+R  DC+L+HS  P+GEN+ W  A 
Sbjct: 28  PQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPYGENIFWGSAG 87

Query: 88  YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTF 146
            D K ++A+  W++E KDY+Y SNTC    +CGHYTQVVWR +  +GCARV C+N    F
Sbjct: 88  ADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

Query: 147 FTCNYDPPGNFVGAKPF 163
            TCNY+P GN VG KP+
Sbjct: 148 ITCNYEPRGNIVGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

>sp|Q04108|PR04_SOLLC Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 97/153 (63%), Gaps = 3/153 (1%)

Query: 12  MLLCSLMMITLGMANARH-PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDC 70
           +L C +++       A++ P D+L  HN  R Q+G+  ++WD  LA  A+ YAN R GDC
Sbjct: 9   LLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDC 68

Query: 71  RLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNT 130
            L HS    GENLA    D  G  A+Q+W+ E  DY+Y +N C    MCGHYTQVVWRN+
Sbjct: 69  NLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNS 126

Query: 131 ARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
            R+GC R +C+NG  F +CNYDP GN+VG +P+
Sbjct: 127 VRLGCGRARCNNGWWFISCNYDPVGNWVGERPY 159

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224100397	161	predicted protein [Populus trichocarpa]	0.981	0.993	0.503	3e-46
224150051	161	predicted protein [Populus trichocarpa]	0.981	0.993	0.503	3e-46
224105795	161	predicted protein [Populus trichocarpa]	0.981	0.993	0.509	4e-46
224105801	161	predicted protein [Populus trichocarpa]	0.981	0.993	0.503	1e-45
388501846	159	unknown [Medicago truncatula]	0.963	0.987	0.506	1e-44
389620134	165	pathogenesis related protein 1 isoform 1	0.901	0.890	0.513	3e-44
392507623	154	pathogenesis related protein 1a, partial	0.920	0.974	0.532	3e-44
255562124	162	STS14 protein precursor, putative [Ricin	0.926	0.932	0.513	1e-43
297802620	155	hypothetical protein ARALYDRAFT_491308 [	0.950	1.0	0.516	1e-43
357471443	855	Maturase K [Medicago truncatula] gi|3555	0.846	0.161	0.549	1e-43

>gi|224100397|ref|XP_002334377.1| predicted protein [Populus trichocarpa] gi|118485875|gb|ABK94784.1| unknown [Populus trichocarpa] gi|118488561|gb|ABK96093.1| unknown [Populus trichocarpa] gi|222871723|gb|EEF08854.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 111/163 (68%), Gaps = 3/163 (1%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           M  +++  F  ++  SL++ +    N   P D+L AHN  R  +G+  L WD  +  YA+
Sbjct: 2   MSSKISLAFFTLITLSLILPSRAQDN---PQDYLDAHNAARAAVGVGPLTWDTTVQAYAQ 58

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCG 120
            YAN+R GDC L HS  P+GEN+AW+  D+ G++A++MW+DE   YDYNSN+C     CG
Sbjct: 59  NYANQRAGDCNLVHSGGPYGENIAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCG 118

Query: 121 HYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           HYTQVVWRN+AR+GCA+VKC  G TF  CNYDPPGN+VG KP+
Sbjct: 119 HYTQVVWRNSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224150051|ref|XP_002336902.1| predicted protein [Populus trichocarpa] gi|222837091|gb|EEE75470.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 111/163 (68%), Gaps = 3/163 (1%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           M  +++  F  ++  SL++ +    N   P D+L AHN  R  +G+  L WD  +  YA+
Sbjct: 2   MSSKISLAFFTLITLSLILPSRAQDN---PQDYLDAHNAARAAVGVGPLTWDTTVQAYAQ 58

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCG 120
            YAN+R GDC L HS  P+GEN+AW+  D+ G++A++MW+DE   YDYNSN+C     CG
Sbjct: 59  NYANQRAGDCNLVHSGGPYGENIAWSSADLSGADAVKMWVDEKAYYDYNSNSCAAGQQCG 118

Query: 121 HYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           HYTQVVWRN+AR+GCA+VKC  G TF  CNYDPPGN+VG KP+
Sbjct: 119 HYTQVVWRNSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105795|ref|XP_002313934.1| predicted protein [Populus trichocarpa] gi|222850342|gb|EEE87889.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           M   ++  F  ++  SL++ +    N   P D+L AHN  R  +G+  L WD  +  YA+
Sbjct: 2   MSSNISLAFFTLITLSLILPSRAQDN---PQDYLDAHNAARAAVGVGPLTWDTTVQAYAQ 58

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCG 120
            YAN+R GDC L HS  P+GENLAW+  D+ G++A++MW+DE   YDYNSN+C     CG
Sbjct: 59  NYANQRAGDCNLIHSGGPYGENLAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCG 118

Query: 121 HYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           HYTQVVWRN+AR+GCA+VKC  G TF  CNYDPPGN+VG KP+
Sbjct: 119 HYTQVVWRNSARLGCAKVKCSTGGTFIGCNYDPPGNYVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105801|ref|XP_002313935.1| predicted protein [Populus trichocarpa] gi|222850343|gb|EEE87890.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           M  +++  F  ++  SL++ +    N   P D+L AHN  R  +G+  L WD  +  YA+
Sbjct: 2   MSSKISLAFFTLITLSLILPSRAQDN---PQDYLDAHNTARAAVGVGPLTWDTTVQAYAQ 58

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCG 120
            YAN+R GDC L HS  P+GEN+AW+  D+ G++A++MW+DE   YDYNSN+C     CG
Sbjct: 59  NYANQRAGDCNLIHSGGPYGENIAWSSADLSGTDAVKMWVDEKAYYDYNSNSCAAGQQCG 118

Query: 121 HYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           HYTQVVWRN+AR+GCA+VKC  G TF  CNYDPPGN VG KP+
Sbjct: 119 HYTQVVWRNSARLGCAKVKCSTGGTFIGCNYDPPGNVVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501846|gb|AFK38989.1| unknown [Medicago truncatula]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 7   TEFCKMLLCSLMMITLGMANARHPD-DWLHAHNGIRIQMGLPALAWDDKLADYAKWYANE 65
           + F  + +  L +I   +A+A++   D++++HN  R Q+G+  + WD+ LA  A+ YAN 
Sbjct: 2   SSFSLICVLGLFIIIGHVAHAQNSQADYVNSHNEARRQVGVANVVWDNNLATVAQNYANS 61

Query: 66  RRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQV 125
           RRGDCRL HS   +GENLA +  D+ G++A+++W++E  DY+YNSNTC    +CGHYTQV
Sbjct: 62  RRGDCRLTHSGGRYGENLAGSTGDLSGTDAVRLWVNEKNDYNYNSNTCASGKVCGHYTQV 121

Query: 126 VWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           VWRNT R+GCA+V+C+NG TF  CNYDPPGN+VG KP+
Sbjct: 122 VWRNTKRIGCAKVRCNNGGTFIICNYDPPGNYVGQKPY 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|389620134|gb|AFK93500.1| pathogenesis related protein 1 isoform 1 [Ficus pumila var. awkeotsang]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 111/148 (75%), Gaps = 1/148 (0%)

Query: 17  LMMITLGMANAR-HPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHS 75
           + + TL  +NA+  P D+++AH+  R ++G+ A+ WDD +A YA+ YAN   GDC + HS
Sbjct: 18  IGLATLQASNAQDSPQDFVNAHSSARGEVGVGAITWDDTVASYAQQYANSHIGDCNMVHS 77

Query: 76  DTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGC 135
             P+GENLAW+  D+ G++A++MW++E  +Y+YNSN+C    +CGHYTQVVWR + R+GC
Sbjct: 78  GGPYGENLAWSSGDLSGTDAVRMWVNEKANYNYNSNSCASGKVCGHYTQVVWRKSVRLGC 137

Query: 136 ARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           A+V+C+NG TF  CNYDPPGN+VG KP+
Sbjct: 138 AKVRCNNGGTFIGCNYDPPGNYVGQKPY 165

Source: Ficus pumila var. awkeotsang

Species: Ficus pumila

Genus: Ficus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392507623|gb|AFM77011.1| pathogenesis related protein 1a, partial [Cydonia oblonga]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)

Query: 12  MLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCR 71
           ++LCS+++ +    +   P D+L++HN  R  +G+  L WDDK+A YA+ YAN+  GDC 
Sbjct: 5   VVLCSVLIQSSHAQDT--PQDYLNSHNAARAAVGVGPLTWDDKVAGYAQNYANQHVGDCN 62

Query: 72  LEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTA 131
           L HS  P+GENLA +  DM G+ A+ MW+ E  DYDY SN+C    +CGHYTQVVWRN+A
Sbjct: 63  LVHSGGPYGENLAMSTGDMSGTAAVDMWVAEKADYDYESNSCADGKVCGHYTQVVWRNSA 122

Query: 132 RVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           RVGCA+V+C +G TF  CNYDPPGN+VG KP+
Sbjct: 123 RVGCAKVRCSSGGTFIGCNYDPPGNYVGQKPY 154

Source: Cydonia oblonga

Species: Cydonia oblonga

Genus: Cydonia

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562124|ref|XP_002522070.1| STS14 protein precursor, putative [Ricinus communis] gi|223538669|gb|EEF40270.1| STS14 protein precursor, putative [Ricinus communis]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 112/152 (73%), Gaps = 1/152 (0%)

Query: 13  LLCSLMMITLGMANARHPD-DWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCR 71
           L+C + +  +  ++A+    D+L+AHN  R  +GL  L WDDK+A YA+ +AN+ + DC 
Sbjct: 10  LVCIISIALIFSSHAQDTQQDYLNAHNSARGDVGLGPLTWDDKVASYAQHHANQHKSDCS 69

Query: 72  LEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTA 131
           L HS+ P+GENLAW+  D+ G++A++MWIDE   YDYNSN+C    +CGHYTQVVWR++ 
Sbjct: 70  LVHSEGPYGENLAWSSGDLSGTDAVKMWIDEKPYYDYNSNSCASGQICGHYTQVVWRSSV 129

Query: 132 RVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           R+GCA+V C+NG TF  CNYDPPGN++G +P+
Sbjct: 130 RLGCAKVSCNNGGTFIGCNYDPPGNYIGQRPY 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802620|ref|XP_002869194.1| hypothetical protein ARALYDRAFT_491308 [Arabidopsis lyrata subsp. lyrata] gi|297315030|gb|EFH45453.1| hypothetical protein ARALYDRAFT_491308 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 109/155 (70%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAK 60
           MK   +++   + +   +++ + +     P D+L AHN  R ++G+  L WD+K+A YA+
Sbjct: 1   MKIFNSSQNLFVAITFFLVLIVHLKAQDSPQDFLAAHNRARAEVGVGPLRWDEKVAAYAR 60

Query: 61  WYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCG 120
            YAN+R+GDC ++HS  P+GEN+AW+   M G  A+ MW+DE  DYDYNSNTC     CG
Sbjct: 61  SYANQRKGDCAMKHSSGPYGENIAWSSGSMTGVAAVNMWVDEQFDYDYNSNTCAWNKQCG 120

Query: 121 HYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPG 155
           HYTQVVWRNTAR+GCA+VKC+NG TF TCNYDPPG
Sbjct: 121 HYTQVVWRNTARLGCAKVKCNNGQTFITCNYDPPG 155

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471443|ref|XP_003606006.1| Maturase K [Medicago truncatula] gi|355507061|gb|AES88203.1| Maturase K [Medicago truncatula]

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/142 (54%), Positives = 108/142 (76%), Gaps = 4/142 (2%)

Query: 24  MANARHPD-DWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT--PFG 80
           +ANA++   D+++AHN  R Q+G+  + WD+ +A +A+ YAN+R+GDC+L HS     +G
Sbjct: 349 VANAQNSRADYVNAHNDARRQVGVGDIVWDNTVASFAQDYANQRKGDCQLIHSGGGGRYG 408

Query: 81  ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
           ENLAW+  DM GS+A+++W++E  DY+YNSNTC    +CGHYTQVVWRN+ RVGCA+V+C
Sbjct: 409 ENLAWSSGDMSGSDAVKLWVNEKADYNYNSNTCASGKVCGHYTQVVWRNSQRVGCAKVRC 468

Query: 141 HNG-NTFFTCNYDPPGNFVGAK 161
            N   TF TCNYDPPGN+VG K
Sbjct: 469 DNNRGTFITCNYDPPGNYVGEK 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2134178	163	AT4G33720 "AT4G33720" [Arabido	0.822	0.822	0.567	3.1e-44
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.803	0.813	0.563	9.6e-41
TAIR|locus:2055240	161	PRB1 "AT2G14580" [Arabidopsis	0.797	0.807	0.522	1.4e-39
TAIR|locus:2117547	210	AT4G25790 "AT4G25790" [Arabido	0.803	0.623	0.548	1.8e-39
TAIR|locus:504954862	207	AT5G57625 "AT5G57625" [Arabido	0.803	0.632	0.556	2.3e-39
TAIR|locus:2064294	161	PR1 "AT2G14610" [Arabidopsis t	0.809	0.819	0.507	6.1e-39
TAIR|locus:2118771	161	AT4G30320 "AT4G30320" [Arabido	0.938	0.950	0.464	7.8e-39
TAIR|locus:2180662	166	AT5G26130 "AT5G26130" [Arabido	0.926	0.909	0.477	1.9e-37
TAIR|locus:2134283	166	AT4G33710 "AT4G33710" [Arabido	1.0	0.981	0.439	1.5e-35
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.822	0.779	0.485	2.4e-35

TAIR|locus:2134178 AT4G33720 "AT4G33720" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 76/134 (56%), Positives = 100/134 (74%)

Query:    30 PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
             P D+L  HN  R ++G+  L WD+K+A YA+ YAN+R+GDC ++HS   +GEN+AW+   
Sbjct:    30 PQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKGDCAMKHSSGSYGENIAWSSGS 89

Query:    90 MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
             M G  A+ MW+DE  DYDY+SNTC     CGHYTQVVWRN+ R+GCA+V+C+NG TF TC
Sbjct:    90 MTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWRNSERLGCAKVRCNNGQTFITC 149

Query:   150 NYDPPGNFVGAKPF 163
             NYDPPGN+VG  P+
Sbjct:   150 NYDPPGNWVGEWPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 75/133 (56%), Positives = 98/133 (73%)

Query:    33 WLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKG 92
             +L AHN  R ++GL  L WDD++A YA  YAN+R  DC L HS+ PFGEN+A +  +M  
Sbjct:    29 FLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRINDCALVHSNGPFGENIAMSSGEMSA 88

Query:    93 SEAIQMWIDEVKDYDYNSNTCRVPD--MCGHYTQVVWRNTARVGCARVKCHNGNTFFTCN 150
              +A +MWI+E + YDY+SNTC  P+   C HYTQVVW+NT R+GCA+V C++G TF TCN
Sbjct:    89 EDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWKNTVRLGCAKVVCNSGGTFITCN 148

Query:   151 YDPPGNFVGAKPF 163
             YDPPGN++G KPF
Sbjct:   149 YDPPGNYIGEKPF 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055240 PRB1 "AT2G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 69/132 (52%), Positives = 99/132 (75%)

Query:    32 DWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMK 91
             D+++AHN  R Q+G+  + WD+ LA YA+ YAN+ +GDCRL HS  P+GENLA +  D+ 
Sbjct:    32 DYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAKSGGDLS 91

Query:    92 GSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNY 151
             G  A+ +W++E  +Y+Y++NTC    +CGHYTQVVWRN+ R+GCA+V+C+NG T  +CNY
Sbjct:    92 GVAAVNLWVNEKANYNYDTNTCN--GVCGHYTQVVWRNSVRLGCAKVRCNNGGTIISCNY 149

Query:   152 DPPGNFVGAKPF 163
             DPPGN+   KP+
Sbjct:   150 DPPGNYANQKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2117547 AT4G25790 "AT4G25790" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 73/133 (54%), Positives = 90/133 (67%)

Query:    33 WLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWAD-YDMK 91
             +L  HN +R  +GLP L WD K+A YA W+AN+RR DC L HS  P+GENL W    D  
Sbjct:    78 FLDPHNTVRGGLGLPPLVWDVKIASYATWWANQRRYDCSLTHSTGPYGENLFWGSGSDFT 137

Query:    92 GSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTFFTCN 150
              + A++ W  E K Y++ +NTC    MCGHYTQ+VWR T R+GCARV C NG   F TCN
Sbjct:   138 STFAVESWTVEAKSYNHMTNTCEGDGMCGHYTQIVWRETRRLGCARVVCENGAGVFITCN 197

Query:   151 YDPPGNFVGAKPF 163
             YDPPGN+VG KP+
Sbjct:   198 YDPPGNYVGEKPY 210

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:504954862 AT5G57625 "AT5G57625" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 74/133 (55%), Positives = 91/133 (68%)

Query:    33 WLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWAD-YDMK 91
             +L  HN +R  +GLP L WD KLA YA W+AN+RR DC L HS  P+GENL W       
Sbjct:    75 FLDPHNALRSGLGLPPLIWDGKLASYATWWANQRRYDCSLTHSTGPYGENLFWGSGSSWA 134

Query:    92 GSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTFFTCN 150
                A+Q WI E + Y++N+N+C    MCGHYTQ+VWR+T R+GCARV C NG   F TCN
Sbjct:   135 PGFAVQSWIVEGRSYNHNTNSCDGSGMCGHYTQMVWRDTKRLGCARVVCENGAGVFITCN 194

Query:   151 YDPPGNFVGAKPF 163
             YDPPGN+VG KP+
Sbjct:   195 YDPPGNYVGEKPY 207

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064294 PR1 "AT2G14610" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 68/134 (50%), Positives = 94/134 (70%)

Query:    30 PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
             P D+L  HN  R  +G+  + WD+++A YA+ YA + RG+CRL HS  P+GENLAW   D
Sbjct:    30 PQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHSGGPYGENLAWGSGD 89

Query:    90 MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
             + G  A+ MW+ E  +Y+Y +NTC    +CGHYTQVVWR + R+GCA+V+C+NG T  +C
Sbjct:    90 LSGVSAVNMWVSEKANYNYAANTCN--GVCGHYTQVVWRKSVRLGCAKVRCNNGGTIISC 147

Query:   150 NYDPPGNFVGAKPF 163
             NYDP GN+V  KP+
Sbjct:   148 NYDPRGNYVNEKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA

GO:0005618 "cell wall" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2118771 AT4G30320 "AT4G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 73/157 (46%), Positives = 102/157 (64%)

Query:    10 CKMLLCSLMMITLGMAN-ARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRG 68
             C  +  + MM+ +   + A + + ++   N  R  + L  L WD KLA YA+W+AN+RRG
Sbjct:     6 CVSVAITAMMLLVTCCHCATYQEQFMGPQNAARAHLRLKPLKWDAKLARYAQWWANQRRG 65

Query:    69 DCRLEHSDTPFGENLAWADYDMKG-SEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVW 127
             DC L HS+ P+GENL W   +  G S+A   W+ E + Y+Y SN+C   +MCGHYTQ+VW
Sbjct:    66 DCALTHSNGPYGENLFWGSGNRWGPSQAAYGWLSEARSYNYRSNSCN-SEMCGHYTQIVW 124

Query:   128 RNTARVGCARVKCHNGN-TFFTCNYDPPGNFVGAKPF 163
             +NT ++GCA V C+ G   F TCNYDPPGNF+G KP+
Sbjct:   125 KNTQKIGCAHVICNGGGGVFLTCNYDPPGNFLGRKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2180662 AT5G26130 "AT5G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 75/157 (47%), Positives = 102/157 (64%)

Query:    13 LLCSLMMITLGMA---NAR-HPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRG 68
             L+ S++++ L  A    A+  P D+L  HN  R Q+G+P + W      YA  YA +R+G
Sbjct:    10 LILSVIVLFLAFAVPLKAQDQPQDYLDEHNRARTQVGVPPMKWHAGAEQYAWNYAQQRKG 69

Query:    69 DCRLEHSDTP--FGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVV 126
             DC L HS++   +GENLAW+   + G+EA+++W++E  DY Y SNTC     CGHYTQVV
Sbjct:    70 DCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCGHYTQVV 129

Query:   127 WRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
             WR +  VGCA+VKC NG TF TCNY PPGN+ G  P+
Sbjct:   130 WRTSEWVGCAKVKCDNGGTFVTCNYYPPGNYRGRWPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134283 AT4G33710 "AT4G33710" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/166 (43%), Positives = 101/166 (60%)

Query:     1 MKQRMTTEFCKMLLCSLMMITLGMANAR-HPDDWLHAHNGIRIQMGLPALAWDDKLADYA 59
             MK  ++ +   +L  +L++       A+    D+L  HN  R  + +P + W    A YA
Sbjct:     1 MKMFISPQTLVLLALALVLAFAVPLKAQDRRQDYLDVHNHARDDVSVPHIKWHAGAARYA 60

Query:    60 KWYANERRGDCRLEHSDTP--FGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPD 117
               YA  R+ DCRL HS++   +GENLAW+  DM G+ A+++W+ E  DY + SNTCR   
Sbjct:    61 WNYAQRRKRDCRLIHSNSRGRYGENLAWSSGDMSGAAAVRLWVREKSDYFHKSNTCRAGK 120

Query:   118 MCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
              CGHYTQVVW+N+  VGCA+VKC NG TF TCNY  PGN  G +P+
Sbjct:   121 QCGHYTQVVWKNSEWVGCAKVKCDNGGTFVTCNYSHPGNVRGRRPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 66/136 (48%), Positives = 89/136 (65%)

Query:    29 HPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANE-RRGDCRLEHSDTPFGENLAWAD 87
             +PD +L  HN  R  + +  L WD  +A  A+ YAN    G C LEHS  P+GENLA+  
Sbjct:    38 YPDSYLRPHNAARAAVKVKPLRWDFGIATVAQDYANHLASGPCSLEHSSGPYGENLAFGS 97

Query:    88 YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFF 147
              DM  ++A+ MW+ E   YD+ SN+C  P  CGHYTQVVWR +AR+GC + KC+NG +  
Sbjct:    98 GDMSAAQAVAMWVHEKSYYDFYSNSCHGP-ACGHYTQVVWRGSARLGCGKAKCNNGASIV 156

Query:   148 TCNYDPPGNFVGAKPF 163
              CNYDP GN++GA+P+
Sbjct:   157 VCNYDPAGNYIGARPY 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05968	PR1_HORVU	No assigned EC number	0.5036	0.8220	0.8170	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	1e-70
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	8e-41
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	1e-37
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	2e-37
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	3e-35
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	8e-29
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	6e-24
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	4e-23
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	7e-23
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	3e-20
COG2340	207	COG2340, COG2340, Uncharacterized protein with SCP	5e-06
cd05379	122	cd05379, SCP_bacterial, SCP_bacterial: SCP-like ex	5e-05

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score =  208 bits (532), Expect = 1e-70
 Identities = 79/136 (58%), Positives = 95/136 (69%), Gaps = 2/136 (1%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
           P D+L AHN  R  +G+P L WDD LA YA+ YAN+RRGDC L HS+ P+GENL W    
Sbjct: 1   PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGG 60

Query: 90  -MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN-TFF 147
               ++A+  W+ E K YDY+SNTC    MCGHYTQVVWRNT RVGCARV C NG   F 
Sbjct: 61  NWSAADAVASWVSEKKYYDYDSNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFI 120

Query: 148 TCNYDPPGNFVGAKPF 163
            CNYDPPGN++G +P+
Sbjct: 121 ICNYDPPGNYIGQRPY 136

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score =  133 bits (336), Expect = 8e-41
 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 15/132 (11%)

Query: 34  LHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGS 93
           L AHN  R   G+  L W++ LA+YA+ YAN       L HS  P+GENLA A Y   G+
Sbjct: 7   LDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLA-AGY-PSGT 64

Query: 94  EAIQMWIDEVKDYDYNS-----NTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFT 148
            A+  W DE++DYDY++      T       GH+TQ+VW++T +VGCA   C     ++ 
Sbjct: 65  SAVDAWYDEIEDYDYSNPGFSEAT-------GHFTQLVWKSTTQVGCAYKDCGGAWGWYI 117

Query: 149 -CNYDPPGNFVG 159
            C YDP GN +G
Sbjct: 118 VCEYDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score =  125 bits (316), Expect = 1e-37
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 34  LHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD-TPFGENLAWA---DYD 89
           L AHN  R   G P L  D +LA  A+ +A +     +L+HS  + +GENLA+A     D
Sbjct: 7   LDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPD 66

Query: 90  MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
           + G EA+  W +E+K YD+N          GH+TQVVW+++  +G    K   G  +   
Sbjct: 67  LTGEEAVDSWYNEIKKYDFNKP--GFSSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVA 124

Query: 150 NYDPPGNF 157
            Y P GN 
Sbjct: 125 RYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score =  124 bits (314), Expect = 2e-37
 Identities = 58/146 (39%), Positives = 74/146 (50%), Gaps = 26/146 (17%)

Query: 30  PDDWLHAHNGIRIQMGL-----------PALAWDDKLADYAKWYANERRGDCRLEHS--D 76
             + L AHN +R Q+               L WD +LA  A+ +AN+    C   HS   
Sbjct: 3   QQEILDAHNKLRSQVAGGFLAAPAASNMLKLTWDCELASSAQNWANQ----CPFGHSTPR 58

Query: 77  TPFGENLAW-----ADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPD-MCGHYTQVVWRNT 130
             +GENLAW     A  D   S A+Q+W DE +DY Y+SNTC+  +   GHYTQVVW  T
Sbjct: 59  PGYGENLAWWSSSTALPDTYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKT 118

Query: 131 ARVGCARVKCHNGN---TFFTCNYDP 153
            +VGC    C +G    T   CNYDP
Sbjct: 119 YKVGCGVANCPDGTKKKTVVVCNYDP 144

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score =  118 bits (298), Expect = 3e-35
 Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 11/128 (8%)

Query: 30  PDDWLHAHNGIRIQM-GLPALAWDDKLADYAKWYANERRGDCRLEHS----DTPFGENLA 84
             + +  HN  R ++ G+  ++WD +LA  A+ YAN     C  +HS        GENLA
Sbjct: 1   AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLA 56

Query: 85  WADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN 144
              YDM G  A+Q W +E+K+Y++           GHYTQVVW+NT ++GC    C + +
Sbjct: 57  AGSYDMTGPAAVQAWYNEIKNYNFG--QPGFSSGTGHYTQVVWKNTTKIGCGVAFCGSNS 114

Query: 145 TFFTCNYD 152
            +  CNY 
Sbjct: 115 YYVVCNYG 122

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score =  102 bits (257), Expect = 8e-29
 Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 29/147 (19%)

Query: 31  DDWLHAHNGIR--IQMG----------LPALAWDDKLADYAKWYANERRGDCRLEHSDTP 78
              L AHN +R  +  G          +P L WDD+LA  A+ +A      C  EHS   
Sbjct: 2   QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKT----CVFEHSPCR 57

Query: 79  ----FGENLAW-----ADYDMKGSEAIQMWIDEVKDYDYNSN-TCRVPDMCGHYTQVVWR 128
                G+NLA      +  +    +A+  W +E+KDY + SN T       GH+TQ+VW 
Sbjct: 58  NTGGVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWA 117

Query: 129 NTARVGCARVKCHNGN---TFFTCNYD 152
            T +VGCA  +C       T   CNY 
Sbjct: 118 KTTKVGCAVARCGKDGGNKTVVVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 90.3 bits (224), Expect = 6e-24
 Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 13/131 (9%)

Query: 34  LHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPFGENL-AWAD 87
           +  HN  R Q+  PA     + WD++LA  A+ YA +   D   +      GENL     
Sbjct: 5   VDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTG 64

Query: 88  YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN--- 144
                ++A++ W +E  DY+YN+NTC    MCGHYTQVVW NT ++GC    C       
Sbjct: 65  PPFDATKAVEDWNNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLR 124

Query: 145 ----TFFTCNY 151
               T   CNY
Sbjct: 125 WENATLLVCNY 135

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 88.6 bits (220), Expect = 4e-23
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 31/148 (20%)

Query: 31  DDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSD--------- 76
           D+ +  HN +R ++  PA     + WD  LA  A+ +A +    C+ +H+          
Sbjct: 4   DECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKK----CKFKHNIYLGKRYKCH 59

Query: 77  ---TPFGENLAWAD--YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTA 131
              T  GEN+ W    Y      A+  W +E K YD+++N+C    +CGHYTQVVW  + 
Sbjct: 60  PKFTSVGENI-WLGSIYIFSPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSY 116

Query: 132 RVGCARVKCHNGN-----TFFTCNYDPP 154
           +VGCA   C N         F CNY P 
Sbjct: 117 KVGCAVAFCPNLGGIPNAAIFVCNYAPA 144

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 87.8 bits (218), Expect = 7e-23
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 19/133 (14%)

Query: 37  HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPF--------GENL 83
           HN +R  +   A     + W+++ A  AK +AN     C L HS            GEN+
Sbjct: 10  HNELRRSVNPTASNMLKMEWNEEAAQNAKKWANT----CNLTHSPPNGRTIGGITCGENI 65

Query: 84  AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
             + Y    S+ IQ W DE KD+ Y         + GHYTQ+VW  +  VGCA   C N 
Sbjct: 66  FMSSYPRSWSDVIQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNS 125

Query: 144 NT--FFTCNYDPP 154
               F+ C+Y P 
Sbjct: 126 KYKYFYVCHYCPA 138

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 80.7 bits (199), Expect = 3e-20
 Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 9/124 (7%)

Query: 34  LHAHNGIRIQMGL-PALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKG 92
           L+ HN +R   G  P L+WD  LA  A+ +A     +    H     GENLA      K 
Sbjct: 1   LNLHNELRSAAGGAPPLSWDPTLAAAAQDHAAYCADNGYFGHDY---GENLALVSVAGKA 57

Query: 93  S----EAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC-HNGNTFF 147
                 A++ W DE KDYD            GH T ++W  + +VGCA  KC    + + 
Sbjct: 58  DDPGVAAVENWYDEAKDYDAAVGINAWMSSPGHRTNLLWPKSTKVGCAVAKCGDGSSYYV 117

Query: 148 TCNY 151
            CNY
Sbjct: 118 VCNY 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|225218 COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown]

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 32/130 (24%)

Query: 36  AHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHS----DTPF------------ 79
             N  R + GLP LAW+  LA  A+ +A +   +    H+    +TP             
Sbjct: 87  ETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGAT 146

Query: 80  -GENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARV 138
            GEN+A+   +     A+  W+        NS   R   +   YT++       VG A  
Sbjct: 147 AGENIAY-GSNDPPEAAVDGWL--------NSPGHRKNLLNPAYTEIG------VGVAYD 191

Query: 139 KCHNGNTFFT 148
             +    ++T
Sbjct: 192 ASNRYGVYWT 201

Length = 207

>gnl|CDD|240179 cd05379, SCP_bacterial, SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 35/135 (25%)

Query: 34  LHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTP--------------- 78
           L   N  R Q GLP L WD  LA  A+ +A +   +    H+                  
Sbjct: 5   LELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPY 64

Query: 79  --FGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCA 136
              GEN+A+         A+  W++                  GH   ++  +   VG  
Sbjct: 65  SSAGENIAYGYST--AEAAVDGWMNSP----------------GHRANILNPDYTEVGVG 106

Query: 137 RVKCHNGNTFFTCNY 151
                +G  ++   +
Sbjct: 107 VAYGGDGGYYWVQVF 121

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	100.0
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	100.0
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	100.0
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	100.0
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	100.0
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	100.0
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	100.0
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	100.0
KOG3017	225	consensus Defense-related protein containing SCP d	100.0
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	100.0
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.88
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	99.85
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	99.72
COG2340	207	Uncharacterized protein with SCP/PR1 domains [Func	99.36

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=100.00  E-value=1.1e-43  Score=245.32  Aligned_cols=133  Identities=59%  Similarity=1.218  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecC-CCCHHHHHHHHHhhhccCCC
Q 031237           30 PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADY-DMKGSEAIQMWIDEVKDYDY  108 (163)
Q Consensus        30 ~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~-~~~~~~~v~~W~~e~~~y~~  108 (163)
                      .++||+.||.+|+.++|++|+||++||+.||.||++++..|...|+.+.+|||+++... ...+.++|+.|++|...|++
T Consensus         1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~   80 (136)
T cd05381           1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDY   80 (136)
T ss_pred             ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence            36899999999999999999999999999999999988889999988789999998763 35788999999999999999


Q ss_pred             CCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecC-CCEEEEEEeeCCCCCCCCCCC
Q 031237          109 NSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHN-GNTFFTCNYDPPGNFVGAKPF  163 (163)
Q Consensus       109 ~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y  163 (163)
                      ..+.+.. +. ++|||||||+++++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus        81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence            8877665 45 999999999999999999999976 478999999999999999998

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=100.00  E-value=8.9e-40  Score=223.79  Aligned_cols=128  Identities=41%  Similarity=0.797  Sum_probs=113.7

Q ss_pred             ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecCCCCHHHHHHHHHhhhccCC
Q 031237           28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYD  107 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~v~~W~~e~~~y~  107 (163)
                      +.++.||+.||.+|+.+++++|+||++|+..||.||++++..|.+.|+...+|||++.+..  ++.++|+.|++|..+|+
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~   78 (129)
T cd05384           1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD   78 (129)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence            4689999999999999999999999999999999997777667789988889999987652  68899999999999999


Q ss_pred             CCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCC-CEEEEEEeeCCCCCCC
Q 031237          108 YNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-NTFFTCNYDPPGNFVG  159 (163)
Q Consensus       108 ~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g  159 (163)
                      |..+.+..  .++|||||||+++++||||++.|... .+++||+|+|+||+.|
T Consensus        79 ~~~~~~~~--~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          79 YSNPGFSE--ATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CCCCCCCC--cccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence            98754322  49999999999999999999999863 6889999999999875

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=100.00  E-value=3.8e-39  Score=221.26  Aligned_cols=128  Identities=36%  Similarity=0.669  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-CccceEEeecC---CCCHHHHHHHHHhhh
Q 031237           28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-PFGENLAWADY---DMKGSEAIQMWIDEV  103 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-~~Gen~~~~~~---~~~~~~~v~~W~~e~  103 (163)
                      +++++||+.||.+|+.++|++|+||++|+..||.||++++..+.+.|+.. .+|||+++...   ...+.++|+.|++|.
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~   80 (132)
T cd05382           1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999988877777888875 59999998753   567899999999999


Q ss_pred             ccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCC
Q 031237          104 KDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNF  157 (163)
Q Consensus       104 ~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~  157 (163)
                      .+|++..+....  .++||+||||+++++||||++.|.++.+++||+|+|+||+
T Consensus        81 ~~y~~~~~~~~~--~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~  132 (132)
T cd05382          81 KKYDFNKPGFSS--KTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV  132 (132)
T ss_pred             ccCCCCCCCCCC--CCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence            999997544322  3999999999999999999999987688999999999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=100.00  E-value=1.5e-36  Score=211.52  Aligned_cols=121  Identities=37%  Similarity=0.781  Sum_probs=105.6

Q ss_pred             ccHHHHHHHHHHHHhhC-----CCCCCcccHHHHHHHHHHHHHhhCCCCcccCC------------CCccceEEeec-CC
Q 031237           28 RHPDDWLHAHNGIRIQM-----GLPALAWDDKLADYAKWYANERRGDCRLEHSD------------TPFGENLAWAD-YD   89 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~-----~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------------~~~Gen~~~~~-~~   89 (163)
                      +++++||+.||.+|+++     .|++|+||++||..||.||    ++|.+.|+.            ..+|||++... +.
T Consensus         1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a----~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~   76 (144)
T cd05385           1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWA----KKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI   76 (144)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHH----hcCCCCCCchhhcccccccccCcccceeeecccCC
Confidence            46899999999999999     4899999999999999999    899888764            24799998765 34


Q ss_pred             CCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCC-----CEEEEEEeeCC
Q 031237           90 MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG-----NTFFTCNYDPP  154 (163)
Q Consensus        90 ~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~  154 (163)
                      ..+.++|+.|++|..+|+|..+.+..  .++|||||||+++++||||++.|..+     ..++||+|+|+
T Consensus        77 ~~~~~av~~W~~e~~~y~~~~~~~~~--~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          77 FSPKNAVTSWYNEGKFYDFDTNSCSR--VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCCC--cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            57899999999999999998766543  49999999999999999999999874     36899999984

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=100.00  E-value=1.8e-36  Score=209.72  Aligned_cols=121  Identities=35%  Similarity=0.693  Sum_probs=106.5

Q ss_pred             cHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC--------CccceEEeecCCCCHHHH
Q 031237           29 HPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT--------PFGENLAWADYDMKGSEA   95 (163)
Q Consensus        29 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~~~~~   95 (163)
                      .++.||+.||.+|+.+.     |++|+||++||..||.||    ++|.+.|++.        .+|||++.......+.++
T Consensus         2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~a   77 (138)
T cd05383           2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWA----NTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDV   77 (138)
T ss_pred             HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHH----hcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHH
Confidence            57899999999999974     678999999999999999    8999888752        479999987655678899


Q ss_pred             HHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC--CEEEEEEeeCC
Q 031237           96 IQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG--NTFFTCNYDPP  154 (163)
Q Consensus        96 v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~  154 (163)
                      |+.|++|..+|+|+...+.. +. ++|||||||+++++||||++.|..+  .+++||+|+|+
T Consensus        78 v~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          78 IQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             HHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            99999999999998776544 44 9999999999999999999999875  68899999985

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=100.00  E-value=6.5e-36  Score=208.01  Aligned_cols=122  Identities=46%  Similarity=0.874  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHHHHhhCC-----------CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-CccceEEeec-----CCCC
Q 031237           29 HPDDWLHAHNGIRIQMG-----------LPALAWDDKLADYAKWYANERRGDCRLEHSDT-PFGENLAWAD-----YDMK   91 (163)
Q Consensus        29 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-~~Gen~~~~~-----~~~~   91 (163)
                      .++.||+.||.+|+.++           |++|+||++||..|+.||    +.|...|+.. .+|||+++..     ....
T Consensus         2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~   77 (144)
T smart00198        2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWA----NQCPFGHSTPRGYGENLAWWSSSTDLPITY   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHH----HhCCCcCCCcCCcCcceEEecccCcccchh
Confidence            58899999999999999           999999999999999999    8999988864 7999999865     2357


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCC-CCcchHhhhHhhhcCeeeEEEEEecCCC---EEEEEEeeCC
Q 031237           92 GSEAIQMWIDEVKDYDYNSNTCRVP-DMCGHYTQVVWRNTARVGCARVKCHNGN---TFFTCNYDPP  154 (163)
Q Consensus        92 ~~~~v~~W~~e~~~y~~~~~~~~~~-~~~~~ftq~vw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~  154 (163)
                      +.++|+.|++|..+|++.+..+... ..++|||||||+++++||||++.|.++.   +++||+|+|+
T Consensus        78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            8899999999999999988776531 2399999999999999999999998863   7999999985

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=100.00  E-value=5.8e-35  Score=198.02  Aligned_cols=117  Identities=38%  Similarity=0.802  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecCCCCHHHHHHHHHhhhc
Q 031237           30 PDDWLHAHNGIRIQM-GLPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADYDMKGSEAIQMWIDEVK  104 (163)
Q Consensus        30 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~~~~~~~v~~W~~e~~  104 (163)
                      +++||+.||.+|+.+ +|+||+||++|+..||.||    ++|.+.|++.    .+|||++......++.++|+.|++|..
T Consensus         1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a----~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~   76 (122)
T cd00168           1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYA----NRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIK   76 (122)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHH----hhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            367999999999999 9999999999999999999    8999988763    589999988754689999999999999


Q ss_pred             cCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEee
Q 031237          105 DYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYD  152 (163)
Q Consensus       105 ~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~  152 (163)
                      +|+|.+.....  .++||+||||+++++||||++.|+++..++||+|+
T Consensus        77 ~y~~~~~~~~~--~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~  122 (122)
T cd00168          77 NYNFGQPGFSS--GTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG  122 (122)
T ss_pred             hCCCCCCCCCC--CccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence            99998554322  49999999999999999999999876899999995

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=100.00  E-value=9.7e-35  Score=200.58  Aligned_cols=118  Identities=38%  Similarity=0.756  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecC-CCCHHHHHHHH
Q 031237           30 PDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADY-DMKGSEAIQMW   99 (163)
Q Consensus        30 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~-~~~~~~~v~~W   99 (163)
                      |+.||+.||.+|+.++     |++|+||++||..||.||    ++|.+.|++.    .+|||++...+ ...+.++|+.|
T Consensus         1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W   76 (136)
T cd05559           1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYA----RKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW   76 (136)
T ss_pred             CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHH----HhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence            5789999999999985     778999999999999999    8999888762    68999987663 45789999999


Q ss_pred             HhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC-------CEEEEEEee
Q 031237          100 IDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG-------NTFFTCNYD  152 (163)
Q Consensus       100 ~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~-------~~~~vC~Y~  152 (163)
                      ++|..+|+|..+.+.. +. ++|||||||+++++||||++.|.++       ..++||+|+
T Consensus        77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            9999999998877665 55 9999999999999999999999652       478999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=214.63  Aligned_cols=132  Identities=42%  Similarity=0.865  Sum_probs=115.5

Q ss_pred             ccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCC------CCccceEEeecCC-------
Q 031237           28 RHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSD------TPFGENLAWADYD-------   89 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------~~~Gen~~~~~~~-------   89 (163)
                      +.+++|++.||.+|..++     |++|+||++||..||.||    ++|.+.|+.      +.+|||+++....       
T Consensus        40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a----~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~  115 (225)
T KOG3017|consen   40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWA----NTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD  115 (225)
T ss_pred             HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHH----hhCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence            678999999999999999     999999999999999999    888887763      5679999987643       


Q ss_pred             CCHHHHHHHHHhhhccCCCCCCCCCCC--CC-cchHhhhHhhhcCeeeEEEEEecCC-----CEEEEEEeeCCCCCCC-C
Q 031237           90 MKGSEAIQMWIDEVKDYDYNSNTCRVP--DM-CGHYTQVVWRNTARVGCARVKCHNG-----NTFFTCNYDPPGNFVG-A  160 (163)
Q Consensus        90 ~~~~~~v~~W~~e~~~y~~~~~~~~~~--~~-~~~ftq~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~gn~~g-~  160 (163)
                      .....+++.|+.|...|++.++.+...  +. ++|||||||+++++||||++.|.++     .+++||+|+|+||..+ +
T Consensus       116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~  195 (225)
T KOG3017|consen  116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE  195 (225)
T ss_pred             ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence            567789999999999999999988741  34 9999999999999999999999986     5799999999966555 5


Q ss_pred             CCC
Q 031237          161 KPF  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      .||
T Consensus       196 ~~y  198 (225)
T KOG3017|consen  196 IPY  198 (225)
T ss_pred             CcC
Confidence            766

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=100.00  E-value=7.1e-33  Score=192.22  Aligned_cols=118  Identities=40%  Similarity=0.771  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHhhC------------CCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceEEeecCC----
Q 031237           30 PDDWLHAHNGIRIQM------------GLPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAWADYD----   89 (163)
Q Consensus        30 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~~~~~~~----   89 (163)
                      ++.||+.||.+|+.+            .|++|+||++||..|+.||    ++|...|+..    .+|||++.....    
T Consensus         1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a----~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~   76 (144)
T cd05380           1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWA----KTCVFEHSPCRNTGGVGQNLAAGSSTGSTV   76 (144)
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHH----hcCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence            468999999999999            7999999999999999999    8998888764    689999987632    


Q ss_pred             -CCHHHHHHHHHhhhccCCCCCC-CCCCCCC-cchHhhhHhhhcCeeeEEEEEecC---CCEEEEEEee
Q 031237           90 -MKGSEAIQMWIDEVKDYDYNSN-TCRVPDM-CGHYTQVVWRNTARVGCARVKCHN---GNTFFTCNYD  152 (163)
Q Consensus        90 -~~~~~~v~~W~~e~~~y~~~~~-~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~---~~~~~vC~Y~  152 (163)
                       ..+.++|+.|++|...|++... .+.. +. ++|||||||+++++||||++.|..   ...++||+|+
T Consensus        77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence             3688999999999999999875 2222 33 999999999999999999999985   3789999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.88  E-value=3.8e-22  Score=132.66  Aligned_cols=114  Identities=36%  Similarity=0.634  Sum_probs=82.4

Q ss_pred             HHHHHHHH-hhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCC-CCccceEEeecCCCCHHHH----HHHHHhhhccCC
Q 031237           34 LHAHNGIR-IQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD-TPFGENLAWADYDMKGSEA----IQMWIDEVKDYD  107 (163)
Q Consensus        34 L~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-~~~Gen~~~~~~~~~~~~~----v~~W~~e~~~y~  107 (163)
                      |+.||++| ...++++|+||++|+..|+.+|    +.|...+.. ...|++.............    ++.|+.+...++
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHA----KYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN   76 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHH----TTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhh----HHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence            78999999 8888999999999999999999    777663332 2457888766532222222    899999999988


Q ss_pred             CCCC--CCCCCCCcchHhhhHhhhcCeeeEEEEEecCCC--EEEEEEe
Q 031237          108 YNSN--TCRVPDMCGHYTQVVWRNTARVGCARVKCHNGN--TFFTCNY  151 (163)
Q Consensus       108 ~~~~--~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~--~~~vC~Y  151 (163)
                      +...  .......++||+||+|.++++||||++.|..+.  +++||.|
T Consensus        77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            7721  111102389999999999999999999998864  9999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=99.85  E-value=1.8e-20  Score=127.85  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=92.8

Q ss_pred             ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecCCC
Q 031237           28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADYDM   90 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~   90 (163)
                      ++++++|+.||.+|.++|++||+||+.|++.|+.||++|+..+.+.|...                 .+|||++.+.  .
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--~   80 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--S   80 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC--C
Confidence            46889999999999999999999999999999999999999888888752                 3489998654  3


Q ss_pred             CHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEee
Q 031237           91 KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYD  152 (163)
Q Consensus        91 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~  152 (163)
                      ++..+++.|++                +.+|+++|+|++.+++|||++.+++++.|+|-.|.
T Consensus        81 ~~~~~v~~W~~----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F~  126 (127)
T TIGR02909        81 TVEAVHNAWMN----------------SPGHRANILNPNYTEIGVGYVEGGSGGIYWTQMFI  126 (127)
T ss_pred             CHHHHHHHHHc----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEec
Confidence            68899999975                25799999999999999999998887777776653

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=99.72  E-value=1e-16  Score=107.74  Aligned_cols=103  Identities=25%  Similarity=0.435  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecCCCCHH
Q 031237           31 DDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADYDMKGS   93 (163)
Q Consensus        31 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~~~~   93 (163)
                      +++++.+|.+|..++++||+||.+|+..|+.+|++|+....+.|...                 .+|||++....  .+.
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~~   79 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TAE   79 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CHH
Confidence            57899999999999999999999999999999999997766777651                 13899887653  688


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEe
Q 031237           94 EAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNY  151 (163)
Q Consensus        94 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y  151 (163)
                      ++++.|+++                .+|+.+|++++.+++|||+....++..++|..|
T Consensus        80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f  121 (122)
T cd05379          80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF  121 (122)
T ss_pred             HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence            999999752                579999999999999999999887677777765

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]

Probab=99.36  E-value=5.1e-12  Score=92.90  Aligned_cols=99  Identities=24%  Similarity=0.376  Sum_probs=85.0

Q ss_pred             CCccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecC
Q 031237           26 NARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADY   88 (163)
Q Consensus        26 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~   88 (163)
                      .+++.+.+++.+|.+|..+++++|+||.+|+..|+.+++.|+....+.|..+                 .+||||+.++.
T Consensus        77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~  156 (207)
T COG2340          77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN  156 (207)
T ss_pred             cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence            3577888999999999999999999999999999999999999899999762                 36999998763


Q ss_pred             CCCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEec
Q 031237           89 DMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCH  141 (163)
Q Consensus        89 ~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~  141 (163)
                      + ....+|+.|.+                +.+|-++|+-.+-+.+|.|+..-.
T Consensus       157 ~-~~~~~v~~Wl~----------------S~gH~~nll~~~~~~~Gv~~~~~~  192 (207)
T COG2340         157 D-PPEAAVDGWLN----------------SPGHRKNLLNPAYTEIGVGVAYDA  192 (207)
T ss_pred             C-chHHHHHHhcC----------------ChhhhhhccCcchhheeEEEEecC
Confidence            2 22799999964                467999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		2e-33
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		4e-17
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		5e-17
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		6e-14
1rc9_A	221	Crystal Structure Of Stecrisp, A Member Of Crisp Fa		1e-12
2dda_A	211	Crystal Structure Of Pseudechetoxin From Pseudechis		1e-12
2vzn_A	218	Crystal Structure Of The Major Allergen From Fire A		3e-12
2ddb_A	210	Crystal Structure Of Pseudecin From Pseudechis Porp		2e-11
1wvr_A	221	Crystal Structure Of A Crisp Family Ca-Channel Bloc		1e-10
1xta_A	221	Crystal Structure Of Natrin, A Snake Venom Crisp Fr		2e-10
1qnx_A	209	Ves V 5, An Allergen From Vespula Vulgaris Venom Le		3e-10
1xx5_A	221	Crystal Structure Of Natrin From Naja Atra Snake Ve		3e-10
3nt8_A	424	Crystal Structure Of Na-Asp-1 Length = 424		5e-08
1u53_A	196	Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F		1e-05

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
           P D+L  HN  R Q+G+  ++WD  LA  A+ YAN R GDC L HS    GENLA    D
Sbjct: 4   PQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKGGGD 61
Query: 90  MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
             G  A+Q+W+ E   Y+Y +N C     C HYTQVVWRN+ R+GC R +C+NG  F +C
Sbjct: 62  FTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISC 121
Query: 150 NYDPPGNFVGAKP 162
           NYDP GN++G +P
Sbjct: 122 NYDPVGNWIGQRP 134

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 25  ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTP----FG 80
           A+ +  ++ L AHN  R + G+P L     L   A+ Y+        L+HS        G
Sbjct: 5   ASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXG 64
Query: 81  ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
           ENLAWA YD  G E    W  E+K+Y++           GH+T +VW+NT ++G  +   
Sbjct: 65  ENLAWASYDQTGKEVADRWYSEIKNYNFQQ--PGFTSGTGHFTAMVWKNTKKMGVGKASA 122
Query: 141 HNGNTFFTCNYDPPGNFV 158
            +G++F    Y P GN V
Sbjct: 123 SDGSSFVVARYFPAGNVV 140

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 25  ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPF----G 80
           A+ +  ++ L AHN  R + G+P L     L   A+ Y+        L+HS        G
Sbjct: 5   ASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCG 64
Query: 81  ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
           ENLAWA YD  G E    W  E+K+Y++           GH+T +VW+NT ++G  +   
Sbjct: 65  ENLAWASYDQTGKEVADRWYSEIKNYNFQQ--PGFTSGTGHFTAMVWKNTKKMGVGKASA 122
Query: 141 HNGNTFFTCNYDPPGNFV 158
            +G++F    Y P GN V
Sbjct: 123 SDGSSFVVARYFPAGNVV 140

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 32/164 (19%)
Query: 20  ITLGMANARHPDDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEH 74
           I   + N     D +  HN  R ++   A     + WD  LA  AK +A+    +C+  H
Sbjct: 9   ILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWAS----NCQFSH 64
Query: 75  SD------------TPFGENLAWADYDM-KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGH 121
           +             T  GEN+      +   S AI  W DE++DYD+ +  C+   +CGH
Sbjct: 65  NTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGH 122
Query: 122 YTQVVWRNTARVGCARVKCHNGNTF--------FTCNYDPPGNF 157
           YTQVVW ++ +VGCA   C   + F        F CNY P GN+
Sbjct: 123 YTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY 166

>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 80  GENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVK 139
           GEN+  + Y MK ++ I  W DE KD+ Y         + GHYTQ+VW  + R+GCA   
Sbjct: 74  GENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAY 133
Query: 140 CHNG--NTFFTCNYDPPGNFVG--AKPF 163
           C +   + FF C Y P GNF+G  A P+
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGKTATPY 161

>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis Australis Length = 211

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 37  HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHS--------DTPFGENL 83
           HN +R  +   A     + W+ + A  AK +AN     C   HS            GEN+
Sbjct: 14  HNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPNKRTVGKLRCGENI 69
Query: 84  AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
             +      S  +Q W DE+K++ Y         + GHYTQVVW  +  +GCA  KC + 
Sbjct: 70  FMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSS 129
Query: 144 NTFFTCNYDPPGNFVGA 160
              + C Y P GN  G+
Sbjct: 130 KYLYVCQYCPAGNIRGS 146

>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 25/137 (18%)
Query: 44  MGLPALAWDDKLADYAKWYANERRGDCRLEH------SDTPFGENLAWADYDMKG----S 93
           + +P L WD +LA  A+ +AN+    C  EH           G+N+A      K     +
Sbjct: 74  VKMPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPN 129
Query: 94  EAIQMWIDEVKDYDYNSNTCRVPD------MCGHYTQVVWRNTARVGCARVKCHNGNT-- 145
           E I +W +EVKD+D N      P         GHYTQ+VW  T ++GC R+     +   
Sbjct: 130 EMILLWYNEVKDFD-NRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWT 188
Query: 146 --FFTCNYDPPGNFVGA 160
             +  CNY P GN +GA
Sbjct: 189 KHYLVCNYGPAGNVLGA 205

>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis Porphyriacus Length = 210

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 37  HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHS--------DTPFGENL 83
           HN +R  +   A     + W+   A  AK +A+     C   HS            GEN+
Sbjct: 13  HNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGKLRCGENI 68
Query: 84  AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
             +      S  +Q W DE+K++ Y         + GHYTQVVW  +  +GCA  KC + 
Sbjct: 69  FMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSS 128
Query: 144 NTFFTCNYDPPGNFVGA 160
              + C Y P GN  G+
Sbjct: 129 KYLYVCQYCPAGNIRGS 145

>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 80  GENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVK 139
           GEN+  A Y  K ++ I  W  E KD+ Y         + GHYTQ+VW  + R GCA   
Sbjct: 74  GENIYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAY 133
Query: 140 CHNG--NTFFTCNYDPPGNFVG--AKPF 163
           C +   + F+ C Y P GN +G  A P+
Sbjct: 134 CPSSKYSYFYVCQYCPAGNIIGKTATPY 161

>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 37  HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPF--------GENL 83
           HN +R ++   A     + W  + A  A+ +AN     C L HS            GE++
Sbjct: 22  HNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESI 77
Query: 84  AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
             +      +E I +W DE K++ Y         + GHYTQ+VW  T R GCA   C + 
Sbjct: 78  YMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSS 137
Query: 144 --NTFFTCNYDPPGNFVG--AKPF 163
             + F+ C Y P GNF G  A P+
Sbjct: 138 AWSYFYVCQYCPSGNFQGKTATPY 161

>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom Length = 209

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 38/172 (22%)
Query: 18  MMITLGMANARHPDDWLHAHNGIR--IQMGL----------PA-----LAWDDKLADYAK 60
           ++++ G+   +   D L  HN  R  I  GL          PA     L W+D+LA  A+
Sbjct: 35  VVVSYGLT-KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQ 93
Query: 61  WYANERRGDCRLEH------SDTPFGENLAW-----ADYDMKGSEAIQMWIDEVKDYDYN 109
            +AN+    C+  H      +    G+N+A      A YD    + ++MW DEVKDY+  
Sbjct: 94  VWANQ----CQYGHDTCRDVAKYQVGQNVALTGSTAAKYD-DPVKLVKMWEDEVKDYNPK 148
Query: 110 SNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDPPGNF 157
                   +  GHYTQ+VW NT  VGC  +K         +  CNY P GNF
Sbjct: 149 KKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNF 200

>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom Length = 221

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 37  HNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDTPF--------GENL 83
           HN +R ++   A     + W  + A  A+ +AN     C L HS            GE++
Sbjct: 22  HNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSPDNLRVLEGIQCGESI 77
Query: 84  AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNG 143
             +      +E I +W DE K++ Y         + GHYTQ+VW  T R GCA   C + 
Sbjct: 78  YMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSS 137
Query: 144 --NTFFTCNYDPPGNFVG--AKPF 163
             + F+ C Y P GNF G  A P+
Sbjct: 138 AWSYFYVCQYCPSGNFQGKTATPY 161

>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1 Length = 424

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 66  RRGD-CRLEHS---DTP-FGENLAWA-----DYDMKGSEAIQMWIDEVKDYDYNSNTCRV 115
           R G+ C  +HS   D P  GEN+        D +    +A Q+W +E+K+Y    +    
Sbjct: 286 RHGNKCVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLT 345
Query: 116 ------PDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVG 159
                 P+M  GHYTQ+ W  T ++GCA V C N  TF  C Y P GN++G
Sbjct: 346 TALWNRPNMQIGHYTQMAWDTTYKLGCAVVFC-NDFTFGVCQYGPGGNYMG 395

>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 69  DCRLEHSD----TPFGENL-----AWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDM- 118
            C  +HS        GEN+     +  D      +A + W  E+ +     N      + 
Sbjct: 69  QCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLF 128
Query: 119 ---CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVG 159
               GHYTQ+VW+ T ++GC    C N   +  C Y P GN +G
Sbjct: 129 SRGVGHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGNMMG 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	1e-64
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	3e-64
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	2e-46
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	2e-44
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	3e-44
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	1e-43
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	2e-43
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	2e-40
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	8e-39
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	6e-35
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	1e-21
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	2e-13

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  193 bits (492), Expect = 1e-64
 Identities = 65/134 (48%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
           P D+L  HN  R Q+G+  ++WD  LA  A+ YAN R GDC L HS    GENLA    D
Sbjct: 4   PQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS--GAGENLAKGGGD 61

Query: 90  MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
             G  A+Q+W+ E   Y+Y +N C     C HYTQVVWRN+ R+GC R +C+NG  F +C
Sbjct: 62  FTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISC 121

Query: 150 NYDPPGNFVGAKPF 163
           NYDP GN++G +P+
Sbjct: 122 NYDPVGNWIGQRPY 135

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  192 bits (491), Expect = 3e-64
 Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENLAW 85
            ++ L AHN  R + G+P L     L   A+ Y+        L+HS        GENLAW
Sbjct: 10  HNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAW 69

Query: 86  ADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNT 145
           A YD  G E    W  E+K+Y++           GH+T +VW+NT ++G  +    +G++
Sbjct: 70  ASYDQTGKEVADRWYSEIKNYNFQQPGF--TSGTGHFTAMVWKNTKKMGVGKASASDGSS 127

Query: 146 FFTCNYDPPGNFVGAKPF 163
           F    Y P GN V    F
Sbjct: 128 FVVARYFPAGNVVNEGFF 145

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score =  149 bits (378), Expect = 2e-46
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 30  PDDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSD-------- 76
             + +  HN +R  +   A     + W+   A  AK +A+     C   HS         
Sbjct: 6   QKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRTVGK 61

Query: 77  TPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCA 136
              GEN+  +      S  +Q W DE+K++ Y         + GHYTQVVW  +  +GCA
Sbjct: 62  LRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCA 121

Query: 137 RVKCHNGNTFFTCNYDPPGNFVG 159
             KC +    + C Y P GN  G
Sbjct: 122 SAKCSSSKYLYVCQYCPAGNIRG 144

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score =  144 bits (365), Expect = 2e-44
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 30  PDDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDT------- 77
             + +  HN +R ++   A     + W  + A  A+ +AN     C L HS         
Sbjct: 15  QKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWAN----TCSLNHSPDNLRVLEG 70

Query: 78  -PFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCA 136
              GE++  +      +E I +W DE K++ Y         + GHYTQ+VW  T R GCA
Sbjct: 71  IQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCA 130

Query: 137 RVKCHNG--NTFFTCNYDPPGNFVG 159
              C +   + F+ C Y P GNF G
Sbjct: 131 VSYCPSSAWSYFYVCQYCPSGNFQG 155

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score =  143 bits (363), Expect = 3e-44
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 27/164 (16%)

Query: 26  NARHPDDWLHAHNGIRIQMGL-----------------PALAWDDKLADYAKWYANERRG 68
           +      +L  HN +R  + L                   +A+D ++   A   A +   
Sbjct: 13  SEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVF 72

Query: 69  DCRLEHSDTPFGENLAWA-----DYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDM----C 119
                +     GEN+  +     D      +A + W  E+ +     N      +     
Sbjct: 73  KHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGV 132

Query: 120 GHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           GHYTQ+VW+ T ++GC    C N   +  C Y P GN +G   +
Sbjct: 133 GHYTQMVWQETVKLGCYVEACSNM-CYVVCQYGPAGNMMGKDIY 175

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score =  142 bits (360), Expect = 1e-43
 Identities = 45/176 (25%), Positives = 67/176 (38%), Gaps = 27/176 (15%)

Query: 15  CSLMMITLGMANARHPDDWLHAHNGIRIQMGL-----------------PALAWDDKLAD 57
           C   ++       +   D L  HN  R ++                     L W+D+LA 
Sbjct: 31  CGNKVVVSYGLTKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAY 90

Query: 58  YAKWYANERRGDCRLEHS--DTPFGENLAWADYDMKGS----EAIQMWIDEVKDYDYNSN 111
            A+ +AN+ +              G+N+A             + ++MW DEVKDY+    
Sbjct: 91  VAQVWANQCQYGHDTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKK 150

Query: 112 TC-RVPDMCGHYTQVVWRNTARVGCARVKCHNGN---TFFTCNYDPPGNFVGAKPF 163
                    GHYTQ+VW NT  VGC  +K         +  CNY P GNF   + +
Sbjct: 151 FSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score =  141 bits (358), Expect = 2e-43
 Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 24/153 (15%)

Query: 30  PDDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYAN--------ERRGDCRLEHSD 76
             D +  HN  R ++   A     + WD  LA  AK +A+          +   +L  + 
Sbjct: 19  IKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNF 78

Query: 77  TPFGENLAWADYDMK-GSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGC 135
           T  GEN+      +   S AI  W DE++DYD+ +  C    +CGHYTQVVW ++ +VGC
Sbjct: 79  TSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRIC--KKVCGHYTQVVWADSYKVGC 136

Query: 136 ARVKCHNGN--------TFFTCNYDPPGNFVGA 160
           A   C   +          F CNY P GN+   
Sbjct: 137 AVQFCPKVSGFDALSNGAHFICNYGPGGNYPTW 169

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score =  135 bits (340), Expect = 2e-40
 Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 40/174 (22%)

Query: 26  NARHPDDWLHAHNGIRIQMGL-----------------PALAWDDKLADYAKWYANERRG 68
                D  ++ HN +R ++                   P L WD +LA  A+ +AN+   
Sbjct: 39  TDAEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQ--- 95

Query: 69  DCRLEHSDT------PFGENLAW----ADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPD- 117
            C  EH           G+N+A            +E I +W +EVKD+D    +    D 
Sbjct: 96  -CTFEHDACRNVERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDD 154

Query: 118 ----MCGHYTQVVWRNTARVGCARVKCHNGN----TFFTCNYDPPGNFVGAKPF 163
                 GHYTQ+VW  T ++GC R+     +     +  CNY P GN +GA  +
Sbjct: 155 NILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score =  135 bits (341), Expect = 8e-39
 Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 38/196 (19%)

Query: 1   MKQRMTTEFCKMLLCSLMMITLGMANARHPDDWLHAHNGIRIQMGL-------------- 46
            +  + T+   +   +    +         D +L  HN  R  +                
Sbjct: 209 CEDGLCTKGPDVPETNQQCPSNTGMTDSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKA 268

Query: 47  ---PALAWDDKLADYAKWYANERRGDCRLEHSDTP----FGENLAWA-----DYDMKGSE 94
                + +D ++   A  + N+    C  +HS        GEN+        D +    +
Sbjct: 269 AKMLKMVYDCEVEASAIRHGNK----CVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQ 324

Query: 95  AIQMWIDEVKDYDYNSNTCRVPD-------MCGHYTQVVWRNTARVGCARVKCHNGNTFF 147
           A Q+W +E+K+Y    +               GHYTQ+ W  T ++GCA V C++  TF 
Sbjct: 325 ASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF-TFG 383

Query: 148 TCNYDPPGNFVGAKPF 163
            C Y P GN++G   +
Sbjct: 384 VCQYGPGGNYMGHVIY 399

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score =  125 bits (314), Expect = 6e-35
 Identities = 22/157 (14%), Positives = 42/157 (26%), Gaps = 29/157 (18%)

Query: 31  DDWLHAHNGIRIQMGL----------------PALAWDDKLADYAKWYANERRGDCRLEH 74
             +L  HN  R ++                    L+WD  +    +         C    
Sbjct: 38  QAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQS----CPSGF 93

Query: 75  SD-TPFGENLAWA-------DYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVV 126
           +      +N           D  +K    +  W    K      +          ++ +V
Sbjct: 94  AGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMV 153

Query: 127 WRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF 163
           +  T ++GCA   C       +C Y+  G       +
Sbjct: 154 YSETTKLGCAYKVCGTK-LAVSCIYNGVGYITNQPMW 189

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 86.7 bits (214), Expect = 1e-21
 Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 36/168 (21%)

Query: 26  NARHPDDWLHAHNGIR-----------IQMGLPALAWDDKLADYAKWYANERRGDCRLEH 74
              H ++ L   N +R           +   +  + WD +LA  AK +       C  E 
Sbjct: 37  LKEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKG----CVGET 92

Query: 75  SDTPF-------GENLAWADYDMKGS------EAIQMWIDEVKDYDY----NSNTCRVPD 117
                       G+       D          +A++    +  +       N        
Sbjct: 93  HACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNG 152

Query: 118 MCGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDPPGNFVGAKP 162
                   +      VGC      +G       TCN+    N  G   
Sbjct: 153 DVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFS-SQNTRGRPV 199

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 20/146 (13%), Positives = 32/146 (21%), Gaps = 40/146 (27%)

Query: 31  DDWLHAHNGIR------IQMGLPA------LAWDDKLADYAKWYANERRGDCRLEHS--- 75
           +     HNG+R         G         L +D  L + A+                  
Sbjct: 20  EAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIKL----PGYADLHHR 75

Query: 76  DTPFGENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGC 135
                             E ++ +  +                     QVV+    R GC
Sbjct: 76  GVTRFSGDYEGSAISALKEILETFSAD----------------KNSMRQVVYPKATRFGC 119

Query: 136 ARVKCHNG-----NTFFTCNYDPPGN 156
           +     N         + C YD    
Sbjct: 120 SGRLRRNKKTGMRRMDWVCVYDKKPK 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	100.0
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	100.0
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	100.0
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	100.0
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	100.0
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	100.0
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	100.0
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	100.0
4ifa_A	339	Extracellular protein containing A SCP domain; vac	99.7
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	99.49
3plv_C	21	66 kDa U4/U6.U5 small nuclear ribonucleoprotein C;	84.5

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=100.00  E-value=2.3e-48  Score=267.37  Aligned_cols=133  Identities=49%  Similarity=1.004  Sum_probs=124.9

Q ss_pred             ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecCCCCHHHHHHHHHhhhccCC
Q 031237           28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDYD  107 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~v~~W~~e~~~y~  107 (163)
                      +.+++||+.||.+|+.++|++|+||++|+..||.||++|+.+|.+.|+++  ||||+++++..++.++|+.|++|..+|+
T Consensus         2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~~c~~~hs~~--GENla~~~~~~~~~~~v~~W~~E~~~y~   79 (135)
T 1cfe_A            2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKGGGDFTGRAAVQLWVSERPSYN   79 (135)
T ss_dssp             CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSCSS--SBCCEECSSSCCHHHHHHHHHTTGGGEE
T ss_pred             cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhcCCCcccCCC--CeEEEEecCCCCHHHHHHHHHhHHhhCC
Confidence            57899999999999999999999999999999999999999999999986  9999987655689999999999999999


Q ss_pred             CCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCCCCC
Q 031237          108 YNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF  163 (163)
Q Consensus       108 ~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  163 (163)
                      |..+.+.. ++ ++|||||||++|++||||++.|.++.+++||+|+|+||+.|++||
T Consensus        80 ~~~~~~~~-~~~~gHfTQ~vW~~t~~vGCa~~~c~~~~~~~VC~Y~p~GN~~g~~pY  135 (135)
T 1cfe_A           80 YATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred             CCCCCcCC-CCcccceeeeEEccCcEEeEEEEEeCCCCEEEEEEEeCCCCCCCCCCC
Confidence            99888776 55 999999999999999999999987789999999999999999999

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=100.00  E-value=1.5e-48  Score=273.70  Aligned_cols=137  Identities=34%  Similarity=0.627  Sum_probs=127.3

Q ss_pred             cCCccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCC----CCccceEEeecCCCCHHHHHHHHH
Q 031237           25 ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD----TPFGENLAWADYDMKGSEAIQMWI  100 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~----~~~Gen~~~~~~~~~~~~~v~~W~  100 (163)
                      .+++++++||++||.+|+.|++++|+||++|++.||.||++++.+|.+.|++    +.+||||+++..+.++.++|+.||
T Consensus         5 ~~~~f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~~~~~hs~~~~~~~~GeNl~~~~~~~~~~~~v~~W~   84 (154)
T 4aiw_A            5 ASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWY   84 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCCCCHHHHTTSSEEEEEEESSCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhhhcccccccccCCCCCCCeeeEecCCCCCHHHHHHHHH
Confidence            4467899999999999999999999999999999999999999999999985    578999998887778999999999


Q ss_pred             hhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCCCCC
Q 031237          101 DEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF  163 (163)
Q Consensus       101 ~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  163 (163)
                      +|..+|+|.++.+..  .++|||||||++|++||||++.|.++..++||+|+|+||+.|+.||
T Consensus        85 ~E~~~y~~~~~~~~~--~~gHfTQ~VW~~t~~vGCg~a~c~~~~~~vVC~Y~P~GN~~g~~~y  145 (154)
T 4aiw_A           85 SEIKNYNFQQPGFTS--GTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFF  145 (154)
T ss_dssp             GGGGGCCTTSCSCCT--TTHHHHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHH
T ss_pred             HHhhhcccCCCCcCC--CcCCeeeeehhhhceeeeEEEEcCCCCEEEEEEEeCCCccCCccch
Confidence            999999999988766  4999999999999999999999998889999999999999998776

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=100.00  E-value=1.8e-41  Score=248.66  Aligned_cols=132  Identities=31%  Similarity=0.656  Sum_probs=118.6

Q ss_pred             CccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC--------CccceEEeecCCCCHH
Q 031237           27 ARHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT--------PFGENLAWADYDMKGS   93 (163)
Q Consensus        27 ~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~~~   93 (163)
                      ++++++||+.||.+|+.++     |++|+||++||..||.||    ++|.+.|++.        .+||||++++...++.
T Consensus         3 ~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A----~~C~~~Hs~~~~r~~~~~~~GENl~~~~~~~~~~   78 (210)
T 2ddb_A            3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWA----DRCTFAHSPPNTRTVGKLRCGENIFMSSQPFPWS   78 (210)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSCBSSCBCCEECHHHHHHHHHHH----TTTCCSCCCGGGSEETTEECEEEEEEESSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccCcccccCHHHHHHHHHHH----hcCCCCCCCccccccCCCCCcceEEEEcCCCCHH
Confidence            4678999999999999996     679999999999999999    9999999862        3799999887555789


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCC--CCC
Q 031237           94 EAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGA--KPF  163 (163)
Q Consensus        94 ~~v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~--~~Y  163 (163)
                      ++|+.||+|..+|+|..+.+.. +. ++|||||||+++++||||++.|..+.+++||+|+|+||+.|+  +||
T Consensus        79 ~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~VC~Y~P~GN~~g~~~~pY  150 (210)
T 2ddb_A           79 GVVQAWYDEIKNFVYGIGAKPP-GSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIATPY  150 (210)
T ss_dssp             HHHHHHHGGGGGEETTTEESST-TSCCHHHHHHTCTTCCEEEEEEEEEETTEEEEEEEEESCSSSTTCTTCSS
T ss_pred             HHHHHHHHHhhhCCCCCCCCCC-CCcccchhhhhhhhccEeeEEEEEcCCCCEEEEEEeeCCCCCCCCccCCC
Confidence            9999999999999998766554 45 999999999999999999999987678999999999999999  898

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=100.00  E-value=4.6e-41  Score=248.21  Aligned_cols=134  Identities=31%  Similarity=0.663  Sum_probs=120.0

Q ss_pred             cCCccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC--------CccceEEeecCCCC
Q 031237           25 ANARHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSDT--------PFGENLAWADYDMK   91 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~--------~~Gen~~~~~~~~~   91 (163)
                      ..++++++||+.||.+|+.++     |++|+||++||..||.||    ++|.+.|++.        .+||||+++....+
T Consensus        10 ~~~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A----~~C~~~Hs~~~~r~~~~~~~GENl~~~~~~~~   85 (221)
T 1xta_A           10 RRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWA----NTCSLNHSPDNLRVLEGIQCGESIYMSSNART   85 (221)
T ss_dssp             TSHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHH----TTTCCSCCCGGGCEETTEECEEEEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHH----hcCCCCCcCccccccCCCCCceEEEeecCCCC
Confidence            445789999999999999996     679999999999999999    9999999862        47999998875557


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC--CEEEEEEeeCCCCCCCC--CCC
Q 031237           92 GSEAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG--NTFFTCNYDPPGNFVGA--KPF  163 (163)
Q Consensus        92 ~~~~v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~gn~~g~--~~Y  163 (163)
                      +.++|+.||+|..+|+|..+.+.. +. ++|||||||+++++||||++.|..+  .+++||+|+|+||+.|+  +||
T Consensus        86 ~~~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY  161 (221)
T 1xta_A           86 WTEIIHLWHDEYKNFVYGVGASPP-GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY  161 (221)
T ss_dssp             HHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCC-CCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCc
Confidence            899999999999999998766544 45 9999999999999999999999874  68999999999999999  898

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=100.00  E-value=1e-40  Score=244.62  Aligned_cols=134  Identities=34%  Similarity=0.666  Sum_probs=114.7

Q ss_pred             CCccHHHHHHHHHHHHhhCC-----------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC------Cccce
Q 031237           26 NARHPDDWLHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHSDT------PFGEN   82 (163)
Q Consensus        26 ~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~------~~Gen   82 (163)
                      +++++++||+.||.+|++|+                 |++|+||++||..||.||    ++|.+.|+..      .+|||
T Consensus        42 ~~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A----~~C~~~h~~~~~~~~~~~GeN  117 (209)
T 1qnx_A           42 TKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWA----NQCQYGHDTCRDVAKYQVGQN  117 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHH----TTCCCSCCSCCCCSSSCCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHH----hcCcccCCCccCCCCCCCccE
Confidence            34678999999999999973                 789999999999999999    9999999851      47999


Q ss_pred             EEeecC----CCCHHHHHHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC---CEEEEEEeeCC
Q 031237           83 LAWADY----DMKGSEAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDPP  154 (163)
Q Consensus        83 ~~~~~~----~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p~  154 (163)
                      |++...    ...+.++|+.||+|..+|+|.+......+. ++|||||||++|++||||++.|..+   ..++||+|+|+
T Consensus       118 l~~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~  197 (209)
T 1qnx_A          118 VALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPS  197 (209)
T ss_dssp             EEEEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred             EEEecccCCCcccHHHHHHHHHHhhhhcCCccCCCCCCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCC
Confidence            998652    246889999999999999998643222123 8999999999999999999999765   36899999999


Q ss_pred             CCCCCCCCC
Q 031237          155 GNFVGAKPF  163 (163)
Q Consensus       155 gn~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       198 GN~~g~~~Y  206 (209)
T 1qnx_A          198 GNFKNEELY  206 (209)
T ss_dssp             CCCTTSCSS
T ss_pred             CCCCCCCCC
Confidence            999999998

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=100.00  E-value=3.3e-40  Score=241.28  Aligned_cols=135  Identities=37%  Similarity=0.766  Sum_probs=118.4

Q ss_pred             hcccCCccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCC------------CCccceEE
Q 031237           22 LGMANARHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSD------------TPFGENLA   84 (163)
Q Consensus        22 ~~~~~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------------~~~Gen~~   84 (163)
                      |.....+++++||+.||.+|+.++     |++|+||++||..||.||    ++|.+.|+.            +.+|||++
T Consensus        11 p~~~~~~f~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A----~~C~~~h~~~~~~~~~~~~~~~~~GeNl~   86 (205)
T 3q2u_A           11 PDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWA----SNCQFSHNTRLKPPHKLHPNFTSLGENIW   86 (205)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHH----TTCBSSCCTTSSTTCCSSTTCSSCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHH----HhCCCCCCccccccccccCCCCCCceEEE
Confidence            444556789999999999999996     779999999999999999    999998865            25899998


Q ss_pred             eec-CCCCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecC--------CCEEEEEEeeCCC
Q 031237           85 WAD-YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHN--------GNTFFTCNYDPPG  155 (163)
Q Consensus        85 ~~~-~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~--------~~~~~vC~Y~p~g  155 (163)
                      .++ ...++.++|+.|++|..+|+|.++.+..  .++|||||||+++++||||++.|..        ...++||+|+|+|
T Consensus        87 ~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~--~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~G  164 (205)
T 3q2u_A           87 TGSVPIFSVSSAITNWYDEIQDYDFKTRICKK--VCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGG  164 (205)
T ss_dssp             EEETTTCCHHHHHHHHHGGGGGEETTTTEESS--CCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCC
T ss_pred             EccCCCCCHHHHHHHHHhHHHhcCCCCCCccc--hhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCC
Confidence            876 3467899999999999999998876543  4999999999999999999999975        2578999999999


Q ss_pred             CCCCCCCC
Q 031237          156 NFVGAKPF  163 (163)
Q Consensus       156 n~~g~~~Y  163 (163)
                      |+ +++||
T Consensus       165 N~-~~~pY  171 (205)
T 3q2u_A          165 NY-PTWPY  171 (205)
T ss_dssp             CC-SSCSS
T ss_pred             Cc-CCCCC
Confidence            99 78888

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=100.00  E-value=2.8e-40  Score=240.13  Aligned_cols=134  Identities=26%  Similarity=0.544  Sum_probs=115.8

Q ss_pred             cCCccHHHHHHHHHHHHhhCC-----------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCC----CCccceE
Q 031237           25 ANARHPDDWLHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHSD----TPFGENL   83 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~----~~~Gen~   83 (163)
                      .+++++++||+.||.+|++++                 |++|+||++||..||.||    ++|.+.|+.    ..+|||+
T Consensus        12 lt~~~~~~iL~~HN~~R~~~a~G~~~~~~g~~~p~A~nM~~L~Wd~~La~~Aq~~A----~~C~~~h~~~~~~~~~GeNl   87 (196)
T 1u53_A           12 MSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNA----KQCVFKHSQPNQRKGLGENI   87 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCBCTTSSBCCCBSSCBCCEECHHHHHHHHHHH----TTCCCCCCCGGGSTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCcccCCCCcCCccccchhcccCHHHHHHHHHHH----HhCccCCCccccCCCCCeEE
Confidence            445679999999999999982                 569999999999999999    999999984    3689999


Q ss_pred             EeecCCC-----CHHHHHHHHHhhhccCCCCC-CCCCCC--CC-cchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCC
Q 031237           84 AWADYDM-----KGSEAIQMWIDEVKDYDYNS-NTCRVP--DM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPP  154 (163)
Q Consensus        84 ~~~~~~~-----~~~~~v~~W~~e~~~y~~~~-~~~~~~--~~-~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~  154 (163)
                      ++.++..     .+.++|+.||+|..+|+|.. +.+..+  +. ++|||||||+++++||||++.|.. .+++||+|+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vGCa~~~c~~-~~~~VC~Y~p~  166 (196)
T 1u53_A           88 FMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPA  166 (196)
T ss_dssp             EEESCTTCCHHHHHHHHHHHHHTHHHHHCCCSCCBCCHHHHTTTCHHHHHHTCTTCCEEEEEEEECSS-CEEEEEEEESC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccCccccCccccchheeeecccCEEeeEEEEeCC-CEEEEEEeCCC
Confidence            9766322     36899999999999999987 444311  33 999999999999999999999976 89999999999


Q ss_pred             CCCCCCCCC
Q 031237          155 GNFVGAKPF  163 (163)
Q Consensus       155 gn~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       167 GN~~g~~~Y  175 (196)
T 1u53_A          167 GNMMGKDIY  175 (196)
T ss_dssp             CCCTTSBSS
T ss_pred             CCCCCCcCC
Confidence            999999998

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=100.00  E-value=4.8e-40  Score=242.45  Aligned_cols=132  Identities=35%  Similarity=0.739  Sum_probs=112.6

Q ss_pred             CccHHHHHHHHHHHHhhCC-----------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCC------CCccceE
Q 031237           27 ARHPDDWLHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHSD------TPFGENL   83 (163)
Q Consensus        27 ~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------~~~Gen~   83 (163)
                      ++++++||+.||.+|++++                 |++|+||++||+.||.||    ++|.+.|+.      ..+||||
T Consensus        40 ~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A----~~C~~~Hs~c~~~~~~~~GeNl  115 (218)
T 2vzn_A           40 DAEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWA----NQCTFEHDACRNVERFAVGQNI  115 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHH----TTCCSSCCSCCCCSSSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHH----HhCCcCCCCCCCCccCCCceEE
Confidence            4678999999999999973                 789999999999999999    999999986      1489999


Q ss_pred             EeecC----CCCHHHHHHHHHhhhccCCCCCC---CCC--CCCC-cchHhhhHhhhcCeeeEEEEEecC-C---CEEEEE
Q 031237           84 AWADY----DMKGSEAIQMWIDEVKDYDYNSN---TCR--VPDM-CGHYTQVVWRNTARVGCARVKCHN-G---NTFFTC  149 (163)
Q Consensus        84 ~~~~~----~~~~~~~v~~W~~e~~~y~~~~~---~~~--~~~~-~~~ftq~vw~~t~~vGCa~~~c~~-~---~~~~vC  149 (163)
                      ++...    ...+.++|+.||+|..+|+|...   .+.  . +. ++|||||||++|++||||++.|.. +   ..++||
T Consensus       116 ~~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC  194 (218)
T 2vzn_A          116 AATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNI-LMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVC  194 (218)
T ss_dssp             EEEEECC-CCCCHHHHHHHHHGGGGGCCGGGSSSCCCCHHH-HHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEeccCCccchHHHHHHHHHHHHHhcCcccccCCCCCccc-CCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEE
Confidence            98652    13567999999999999999842   111  1 23 899999999999999999999976 3   468999


Q ss_pred             EeeCCCCCCCCCCC
Q 031237          150 NYDPPGNFVGAKPF  163 (163)
Q Consensus       150 ~Y~p~gn~~g~~~Y  163 (163)
                      +|+|+||+.|++||
T Consensus       195 ~Y~P~GN~~g~~~y  208 (218)
T 2vzn_A          195 NYGPAGNVLGAPIY  208 (218)
T ss_dssp             EEESCCCCTTSCSS
T ss_pred             EECCCCCCCCCccc
Confidence            99999999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=2.6e-38  Score=253.44  Aligned_cols=134  Identities=17%  Similarity=0.293  Sum_probs=115.8

Q ss_pred             cCCccHHHHHHHHHHHHhhC--C--------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCC-CCccceEEeec
Q 031237           25 ANARHPDDWLHAHNGIRIQM--G--------------LPALAWDDKLADYAKWYANERRGDCRLEHSD-TPFGENLAWAD   87 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~--~--------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~-~~~Gen~~~~~   87 (163)
                      .+++.+++||+.||.+|+++  |              |++|+||++||..||.||    ++|.+.|+. ..+|||++...
T Consensus        32 ~~~~~~~~il~~HN~~R~~~A~G~~~~~~~~~p~A~nM~~L~Wd~eLa~~Aq~~a----~~C~~~h~~~~~~GeNl~~~~  107 (424)
T 3nt8_A           32 ITDSDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAI----QSCPSGFAGIQGVAQNTMSWS  107 (424)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCBCSSSBCCCEESCBCCEECHHHHHHHHHHC----TTCCSSCCCCTTCEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCcccCCCCCCcccccCCccccCHHHHHHHHHHH----hhCCCcCCCCCCceeeEEecc
Confidence            34567899999999999999  2              788999999999999999    999999886 46999998764


Q ss_pred             --C---C--CCHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCC
Q 031237           88 --Y---D--MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGA  160 (163)
Q Consensus        88 --~---~--~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~  160 (163)
                        +   +  ..+.++|+.||+|..+|++..........++|||||||+++++||||++.|.. .+++||+|+|+||+.|+
T Consensus       108 ~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~ghfTqmvw~~t~~vGCa~~~c~~-~~~~VC~Y~p~GN~~g~  186 (424)
T 3nt8_A          108 SSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYTGGGLFAFSNMVYSETTKLGCAYKVCGT-KLAVSCIYNGVGYITNQ  186 (424)
T ss_dssp             CTTCCSCGGGGHHHHHHHHHTHHHHHCCCTTCBCCCTTCHHHHHHHCTTCCEEEEEEEEETT-EEEEEEEESSCCCSTTC
T ss_pred             ccCCcCCHHHHHHHHHHHHHHHHHHcCCcccccCCCcchHHHHHHHHHhcCeeceEEEEeCC-cEEEEEEECCCCCcccc
Confidence              1   1  13789999999999999998544333023999999999999999999999987 89999999999999999


Q ss_pred             CCC
Q 031237          161 KPF  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      +||
T Consensus       187 ~~Y  189 (424)
T 3nt8_A          187 PMW  189 (424)
T ss_dssp             BSS
T ss_pred             ccc
Confidence            998

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=100.00  E-value=1.2e-37  Score=231.80  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=110.7

Q ss_pred             CCccHHHHHHHHHHHHhhC-----------CCCCCcccHHHHHHHHHHHHHhhCCCCcccCC---C----CccceEEeec
Q 031237           26 NARHPDDWLHAHNGIRIQM-----------GLPALAWDDKLADYAKWYANERRGDCRLEHSD---T----PFGENLAWAD   87 (163)
Q Consensus        26 ~~~~~~~iL~~hN~~R~~~-----------~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~---~----~~Gen~~~~~   87 (163)
                      ++++++.||+.||.+|+.+           .|++|+||++||..||.||    ++|.+.|+.   .    .+|||++..+
T Consensus        37 s~~~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a----~~C~~~h~~c~~~~~~~~~Gen~~~~~  112 (233)
T 3u3l_C           37 LKEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHT----KGCVGETHACRNTERFWLPGQLNFKYS  112 (233)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHH----TTCCSCCCCBCCCSSCSSCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHH----HhCCCCCCcccccCcCCcCeEEEEEec
Confidence            3568999999999999999           4999999999999999999    999999976   1    5899887654


Q ss_pred             CC--C----CHHHHHHHHHhhhccCCCCC----CCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC---CEEEEEEeeC
Q 031237           88 YD--M----KGSEAIQMWIDEVKDYDYNS----NTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDP  153 (163)
Q Consensus        88 ~~--~----~~~~~v~~W~~e~~~y~~~~----~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p  153 (163)
                      +.  .    .+.++|+.||+|..+|++..    +.... +. ++|||||||++|++||||++.|..+   .+++||+|+|
T Consensus       113 ~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~-~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p  191 (233)
T 3u3l_C          113 GDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGP-NGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS  191 (233)
T ss_dssp             ESSCCCHHHHHHHHHHHHHGGGGTCCHHHHHSCCSCC---CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhhCHHHHhcCCCccc-ccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC
Confidence            32  1    26899999999999998653    11111 33 9999999999999999999999764   4799999997


Q ss_pred             CCCCCCCCCC
Q 031237          154 PGNFVGAKPF  163 (163)
Q Consensus       154 ~gn~~g~~~Y  163 (163)
                       ||+.|++||
T Consensus       192 -GN~~g~~~Y  200 (233)
T 3u3l_C          192 -QNTRGRPVY  200 (233)
T ss_dssp             -CCCTTSCSS
T ss_pred             -CCCCCCcee
Confidence             999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=2.8e-36  Score=241.58  Aligned_cols=134  Identities=31%  Similarity=0.608  Sum_probs=115.1

Q ss_pred             cCCccHHHHHHHHHHHHhhCC-----------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCCC----CccceE
Q 031237           25 ANARHPDDWLHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHSDT----PFGENL   83 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~----~~Gen~   83 (163)
                      .+++++++||+.||.+|++++                 |++|+||++||+.||.||    ++|.+.|++.    .+|||+
T Consensus       233 ~~~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~nM~~L~Wd~~La~~Aq~~a----~~C~~~h~~~~~~~~~GeNl  308 (424)
T 3nt8_A          233 MTDSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHG----NKCVYQHSHGEDRPGLGENI  308 (424)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCSBCTTSSBCCCBSSCBCCEECHHHHHHHHHHH----TTCCSSCCCTTTSTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCchhceEhHHHHHHHHHHH----HhCcccCCCccccCccceeE
Confidence            345789999999999999985                 348999999999999999    9999999863    689999


Q ss_pred             EeecC-C----CCHHHHHHHHHhhhccCCCCCCC-C-----CCCCC-cchHhhhHhhhcCeeeEEEEEecCCCEEEEEEe
Q 031237           84 AWADY-D----MKGSEAIQMWIDEVKDYDYNSNT-C-----RVPDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNY  151 (163)
Q Consensus        84 ~~~~~-~----~~~~~~v~~W~~e~~~y~~~~~~-~-----~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y  151 (163)
                      ++.+. .    ..+.++|+.||+|..+|+|.... +     ..++. ++|||||||+++++||||++.|.+ ..++||+|
T Consensus       309 ~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~-~~~~VC~Y  387 (424)
T 3nt8_A          309 YKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCND-FTFGVCQY  387 (424)
T ss_dssp             EEESSTTCCHHHHHHHHHHHHHTHHHHTCCCTTCBCCHHHHTCTTCCCHHHHHHHCTTCCEEEEEEEECSS-SEEEEEEE
T ss_pred             EecccCCCchHHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcccchHHHhhhhcceeeeEEEEeCC-CeEEEEEe
Confidence            98762 2    24789999999999999987543 1     11133 999999999999999999999987 68999999


Q ss_pred             eCCCCCCCCCCC
Q 031237          152 DPPGNFVGAKPF  163 (163)
Q Consensus       152 ~p~gn~~g~~~Y  163 (163)
                      +|+||+.|++||
T Consensus       388 ~p~GN~~g~~~Y  399 (424)
T 3nt8_A          388 GPGGNYMGHVIY  399 (424)
T ss_dssp             ESCCCCTTSBSS
T ss_pred             cCCCCcCCCCCC
Confidence            999999999998

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=100.00  E-value=1.1e-33  Score=205.28  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=94.5

Q ss_pred             cCCccHHHHHHHHHHHHhhCC------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecC---C
Q 031237           25 ANARHPDDWLHAHNGIRIQMG------------LPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADY---D   89 (163)
Q Consensus        25 ~~~~~~~~iL~~hN~~R~~~~------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~---~   89 (163)
                      .++++++.||+.||.+|+.++            |.+|+||++||..||.||    + |. .+. ...|||++..++   .
T Consensus        14 lt~~~~~~il~~HN~~R~~va~G~~~~~p~A~nM~~l~Wd~eLa~~Aq~~A----~-C~-~~~-~~~GeNl~~~sg~~~~   86 (206)
T 3s6s_A           14 VDRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEI----K-LP-GYA-DLHHRGVTRFSGDYEG   86 (206)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCSTTSCSCCCCBCCEEEHHHHHHHHHHH----H-ST-THH-HHTTCEEEEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCCCCcchhhcCcCCchHHHHHHHHHhh----c-CC-CCC-CCCCcEEEEecCCCCc
Confidence            345689999999999999873            678999999999999999    8 98 432 223999965432   2


Q ss_pred             CCH--HHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEec----CC-CEEEEEEeeCCCCCCCCCC
Q 031237           90 MKG--SEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCH----NG-NTFFTCNYDPPGNFVGAKP  162 (163)
Q Consensus        90 ~~~--~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~----~~-~~~~vC~Y~p~gn~~g~~~  162 (163)
                      ..+  .++|+.|++|            .   ++|||||||++|++||||++.|.    .+ .+++||+|+|+|  .|++|
T Consensus        87 ~~~~~~~av~~W~~E------------~---~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~~~  149 (206)
T 3s6s_A           87 SAISALKEILETFSA------------D---KNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDGES  149 (206)
T ss_dssp             CHHHHHHHHHHHHTT------------C---HHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTTCC
T ss_pred             cchhHHHHHHHHHhh------------h---hhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCCCC
Confidence            223  3899999999            2   78999999999999999999996    22 589999999999  79999


Q ss_pred             C
Q 031237          163 F  163 (163)
Q Consensus       163 Y  163 (163)
                      |
T Consensus       150 Y  150 (206)
T 3s6s_A          150 F  150 (206)
T ss_dssp             C
T ss_pred             c
Confidence            8

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=99.70  E-value=2.7e-17  Score=127.39  Aligned_cols=94  Identities=26%  Similarity=0.382  Sum_probs=83.9

Q ss_pred             ccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCC-----------------CccceEEeecCCC
Q 031237           28 RHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDT-----------------PFGENLAWADYDM   90 (163)
Q Consensus        28 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~-----------------~~Gen~~~~~~~~   90 (163)
                      .+++++|++||.+|..+|++||+||..|++.|+.||+.|+..|.+.|...                 .+||||+.+.  .
T Consensus       219 a~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~G~~~~~R~~~~G~~~~~~GENIA~G~--~  296 (339)
T 4ifa_A          219 GNMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQH--S  296 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTTTBCHHHHHHHTTCCCSEEEEEEEESC--S
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCCCCCHHHHHHHcCCCcCceeEEEEEeC--C
Confidence            45789999999999999999999999999999999999999899999751                 3699999876  3


Q ss_pred             CHHHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEE
Q 031237           91 KGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVK  139 (163)
Q Consensus        91 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~  139 (163)
                      ++..+|+.|++                +.+|+.+|+|++.++||||+..
T Consensus       297 s~~~av~~Wmn----------------SpGHr~NIL~~~~t~iGvGv~~  329 (339)
T 4ifa_A          297 DGVAALQGWLN----------------SEGHRKNLLNEQFTGLGVGVYD  329 (339)
T ss_dssp             SHHHHHHHHHT----------------SHHHHHHHTCTTCCEEEEEEET
T ss_pred             CHHHHHHHHhC----------------CHhHHHHHhCCCCCEEEEEEEe
Confidence            68899999985                3689999999999999999863

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=99.49  E-value=9.2e-14  Score=107.31  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCC----------------CCccceEEeecCCCCH
Q 031237           29 HPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD----------------TPFGENLAWADYDMKG   92 (163)
Q Consensus        29 ~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~----------------~~~Gen~~~~~~~~~~   92 (163)
                      ..+++|+++|.+|..+|++||.||..|+..|+.||+.|+......|.+                ..+||||+.+.  .++
T Consensus       205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~h~~~~g~~~~~R~~~~g~~~~~~gENIA~g~--~~~  282 (323)
T 4h0a_A          205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAF--NDV  282 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC------CCCHHHHHHHHHHTTCCCSEEEEEEEESC--CSH
T ss_pred             HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCCCcCCCCCCHHHHHHHcCCCcCeeeeEEecCC--CCH
Confidence            456799999999999999999999999999999999998654444433                13599999876  378


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEE
Q 031237           93 SEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARV  138 (163)
Q Consensus        93 ~~~v~~W~~e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~  138 (163)
                      ..+|+.|++                +.+|..+|+..+.++||+|+.
T Consensus       283 ~~vv~~Wmn----------------SpgHR~NiL~~~~t~iGvGv~  312 (323)
T 4h0a_A          283 PTLIHSWMN----------------SDIHRSRLLNSKYDEMGGDVM  312 (323)
T ss_dssp             HHHHHHHHT----------------SHHHHHHHTCSSCCEEEEEEE
T ss_pred             HHHHHHHHc----------------CHHHHHHHcCCCCCEEEEEEE
Confidence            899999984                468999999999999999985

>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}

Probab=84.50  E-value=0.94  Score=19.98  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=14.2

Q ss_pred             HHHHHHHHhhCCCCCCc
Q 031237           34 LHAHNGIRIQMGLPALA   50 (163)
Q Consensus        34 L~~hN~~R~~~~m~~L~   50 (163)
                      ++..|..|.+.||.|+.
T Consensus         4 iEEtnk~r~~lGLkplp   20 (21)
T 3plv_C            4 IEETNELRASLGLKLIP   20 (26)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCCCCCC
Confidence            46789999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	7e-37
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	1e-32
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	2e-32
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	3e-26

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score =  121 bits (305), Expect = 7e-37
 Identities = 64/134 (47%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

Query: 30  PDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYD 89
           P D+L  HN  R Q+G+  ++WD  LA  A+ YAN R GDC L H  +  GENLA    D
Sbjct: 4   PQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH--SGAGENLAKGGGD 61

Query: 90  MKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTC 149
             G  A+Q+W+ E   Y+Y +N C     C HYTQVVWRN+ R+GC R +C+NG  F +C
Sbjct: 62  FTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISC 121

Query: 150 NYDPPGNFVGAKPF 163
           NYDP GN++G +P+
Sbjct: 122 NYDPVGNWIGQRPY 135

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score =  111 bits (279), Expect = 1e-32
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 31  DDWLHAHNGIRIQMGLPA-----LAWDDKLADYAKWYANERRGDCRLEHSDT----PFGE 81
           ++ +  HN +R  +   A     + W  + AD A+ +A           S        GE
Sbjct: 16  NEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRVIEGIKCGE 75

Query: 82  NLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCH 141
           N+  + Y MK ++ I  W DE KD+ Y         + GHYTQ+VW  + R+GCA   C 
Sbjct: 76  NIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCP 135

Query: 142 NG--NTFFTCNYDPPGNFVG 159
           +   + FF C Y P GNF+G
Sbjct: 136 SSPYSYFFVCQYCPAGNFIG 155

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-32
 Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 25  ANARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRL----EHSDTPFG 80
           A+ +  ++ L AHN  R + G+P L     L   A+ Y+        L    E S    G
Sbjct: 2   ASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCG 61

Query: 81  ENLAWADYDMKGSEAIQMWIDEVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKC 140
           ENLAWA YD  G E    W  E+K+Y++           GH+T +VW+NT ++G  +   
Sbjct: 62  ENLAWASYDQTGKEVADRWYSEIKNYNFQQPGF--TSGTGHFTAMVWKNTKKMGVGKASA 119

Query: 141 HNGNTFFTCNYDPPGNFVGAKPF 163
            +G++F    Y P GN V    F
Sbjct: 120 SDGSSFVVARYFPAGNVVNEGFF 142

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 96.9 bits (240), Expect = 3e-26
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 27/157 (17%)

Query: 34  LHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHS- 75
           L  HN  R ++                  +  L W+D+LA  A+ +AN+ +         
Sbjct: 50  LKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDV 109

Query: 76  -DTPFGENLAWADY----DMKGSEAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRN 129
                G+N+A             + ++MW DEVKDY+          +  GHYTQ+VW N
Sbjct: 110 AKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWAN 169

Query: 130 TARVGCARVKCHNGN---TFFTCNYDPPGNFVGAKPF 163
           T  VGC  +K         +  CNY P GNF   + +
Sbjct: 170 TKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	100.0
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	100.0
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	100.0
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	100.0

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=100.00  E-value=1.7e-47  Score=261.32  Aligned_cols=134  Identities=49%  Similarity=0.985  Sum_probs=124.0

Q ss_pred             CccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCCCCccceEEeecCCCCHHHHHHHHHhhhccC
Q 031237           27 ARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSDTPFGENLAWADYDMKGSEAIQMWIDEVKDY  106 (163)
Q Consensus        27 ~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~~~~Gen~~~~~~~~~~~~~v~~W~~e~~~y  106 (163)
                      +++++++|+.||.+|+.++|+||+||++|++.||.||++++..|.+.|+  .+|||++.+.++.++.++|+.|++|..+|
T Consensus         1 ~~~~q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~~~~~~~~~--~~GeNi~~~~~~~~~~~av~~W~~E~~~y   78 (135)
T d1cfea_           1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS--GAGENLAKGGGDFTGRAAVQLWVSERPSY   78 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSC--SSSBCCEECSSSCCHHHHHHHHHTTGGGE
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHhhCCCcccC--ccccceeccCCCCCHHHHHHHHHhhcccc
Confidence            4678899999999999999999999999999999999999888887775  58999998877788999999999999999


Q ss_pred             CCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCCCCC
Q 031237          107 DYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF  163 (163)
Q Consensus       107 ~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  163 (163)
                      +|..+.+.. +. ++|||||||++|++||||++.|.++.+++||+|+|+||+.|++||
T Consensus        79 ~~~~~~~~~-~~~~ghftQmvW~~t~~vGCa~~~c~~~~~~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          79 NYATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             EGGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred             ccccccCCC-CcccchhheeeehhheEeeEEEEEECCCCEEEEEEEeCCCCcCCcCCC
Confidence            998887765 44 999999999999999999999998889999999999999999999

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=252.58  Aligned_cols=136  Identities=33%  Similarity=0.626  Sum_probs=125.7

Q ss_pred             CCccHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHhhCCCCcccCC----CCccceEEeecCCCCHHHHHHHHHh
Q 031237           26 NARHPDDWLHAHNGIRIQMGLPALAWDDKLADYAKWYANERRGDCRLEHSD----TPFGENLAWADYDMKGSEAIQMWID  101 (163)
Q Consensus        26 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~----~~~Gen~~~~~~~~~~~~~v~~W~~  101 (163)
                      +++++++||++||.+|++++++||+||++|++.||.||++|+++|.+.|++    +.+|||++++..+..+.++|+.|++
T Consensus         3 ~~~f~~~il~~HN~~R~~~g~~pL~wd~~La~~A~~~A~~~a~~~~~~h~~~~~~~~~geni~~~~~~~~~~~~v~~W~~   82 (149)
T d1smba_           3 SKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYS   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSSEEEEEEESSCCCHHHHHHHHHG
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhhcccccccccccccccccCceeeecCCCccHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999975    4689999988866788999999999


Q ss_pred             hhccCCCCCCCCCCCCCcchHhhhHhhhcCeeeEEEEEecCCCEEEEEEeeCCCCCCCCCCC
Q 031237          102 EVKDYDYNSNTCRVPDMCGHYTQVVWRNTARVGCARVKCHNGNTFFTCNYDPPGNFVGAKPF  163 (163)
Q Consensus       102 e~~~y~~~~~~~~~~~~~~~ftq~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~~g~~~Y  163 (163)
                      |..+|+|.++.+..  .++|||||||+++++||||++.|.++..++||+|+|+||+.|+.||
T Consensus        83 e~~~y~~~~~~~~~--~~ghftqmvw~~t~~vGCg~a~c~~~~~~~VC~Y~p~GN~~~~~~y  142 (149)
T d1smba_          83 EIKNYNFQQPGFTS--GTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFF  142 (149)
T ss_dssp             GGGGCCTTSCCCCG--GGHHHHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHH
T ss_pred             HHhhcccCCCCccc--ccchhhheecCCceEeeEEEEEcCCCCEEEEEEeeCCCCcCCcccc
Confidence            99999999887655  4999999999999999999999988788999999999999999876

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=100.00  E-value=8e-41  Score=235.01  Aligned_cols=135  Identities=34%  Similarity=0.696  Sum_probs=119.0

Q ss_pred             ccCCccHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHHHHhhCCCCcccCC--------CCccceEEeecCCC
Q 031237           24 MANARHPDDWLHAHNGIRIQMG-----LPALAWDDKLADYAKWYANERRGDCRLEHSD--------TPFGENLAWADYDM   90 (163)
Q Consensus        24 ~~~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~--------~~~Gen~~~~~~~~   90 (163)
                      ...++++++||+.||.+|++++     |++|+||.+|+..|+.||    +.|...|+.        ..+|||++......
T Consensus         9 ~~~~~~~~~il~~HN~~R~~~~~~a~~m~~L~Wd~~La~~A~~~a----~~c~~~~~~~~~~~~~~~~~g~n~~~~~~~~   84 (164)
T d1rc9a1           9 PRKPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWA----YRCIESHSSYESRVIEGIKCGENIYMSPYPM   84 (164)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHH----TTTCCSCCCGGGGEETTEECEEEEEEESSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCcccccccccCHHHHHHHHHHH----HHHhhccCCcccccccccccceEEEEecCCC
Confidence            3445789999999999999997     566999999999999999    889887765        26799998877667


Q ss_pred             CHHHHHHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC--CEEEEEEeeCCCCCCCC--CCC
Q 031237           91 KGSEAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG--NTFFTCNYDPPGNFVGA--KPF  163 (163)
Q Consensus        91 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~gn~~g~--~~Y  163 (163)
                      .+.++|+.|++|..+|+|....+.. +. ++|||||||+++++||||++.|.++  .+++||+|+|+||+.|+  +||
T Consensus        85 ~~~~~v~~W~~E~~~~~~~~~~~~~-~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1          85 KWTDIIHAWHDEYKDFKYGVGADPP-NAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             CHHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             CHHHHHHHHhhhhheeecCCCCCCC-cchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence            8999999999999999998877666 55 9999999999999999999999876  67999999999999997  567

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=100.00  E-value=1.6e-39  Score=236.47  Aligned_cols=134  Identities=34%  Similarity=0.662  Sum_probs=115.8

Q ss_pred             CCccHHHHHHHHHHHHhhCC-----------------CCCCcccHHHHHHHHHHHHHhhCCCCcccCC------CCccce
Q 031237           26 NARHPDDWLHAHNGIRIQMG-----------------LPALAWDDKLADYAKWYANERRGDCRLEHSD------TPFGEN   82 (163)
Q Consensus        26 ~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~Aq~~a~~~~~~C~~~~~~------~~~Gen   82 (163)
                      ++++|++||+.||.+|++++                 |.+|+||++||..||.||    ++|...|+.      ..+|||
T Consensus        42 t~~~r~~iL~~HN~~R~~vA~G~~~~~~~~~~P~A~~M~~L~Wd~eLa~~A~~~a----~~C~~~~~~~~~~~~~~~Gen  117 (209)
T d1qnxa_          42 TKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWA----NQCQYGHDTCRDVAKYQVGQN  117 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHH----TTCCCSCCSCCCCSSSCCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHhcccccccccCCCCccccCccceECHHHHHHHHHHH----hhcccCCCcccCCCCCCCcce
Confidence            45789999999999999852                 778999999999999999    899888765      257999


Q ss_pred             EEeec----CCCCHHHHHHHHHhhhccCCCCCCCCCCCCC-cchHhhhHhhhcCeeeEEEEEecCC---CEEEEEEeeCC
Q 031237           83 LAWAD----YDMKGSEAIQMWIDEVKDYDYNSNTCRVPDM-CGHYTQVVWRNTARVGCARVKCHNG---NTFFTCNYDPP  154 (163)
Q Consensus        83 ~~~~~----~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~-~~~ftq~vw~~t~~vGCa~~~c~~~---~~~~vC~Y~p~  154 (163)
                      ++...    ....+.++|+.|++|..+|++....+...+. ++|||||||+++++||||++.|..+   .+++||+|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~  197 (209)
T d1qnxa_         118 VALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPS  197 (209)
T ss_dssp             EEEEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred             eeecccCCcCcccHHHHHHHHHHHhhhcCCCcccccCCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCC
Confidence            98754    2346889999999999999998776554233 9999999999999999999999765   57899999999


Q ss_pred             CCCCCCCCC
Q 031237          155 GNFVGAKPF  163 (163)
Q Consensus       155 gn~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       198 GN~~g~~~Y  206 (209)
T d1qnxa_         198 GNFKNEELY  206 (209)
T ss_dssp             CCCTTSCSS
T ss_pred             CCCCCCCCC
Confidence            999999999