Citrus Sinensis ID: 031238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST
Secondary Structure (PSIPRED)
cEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcHHHHHHccccccccccccccccccEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRavteedghslaekeGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQAsantalpgqgttinvndaspsvkkgccst
Flexible Loop (DISEMBL)
mivegktvkaqiwdtagQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANtalpgqgttinvndaspsvkkgccst
Low Complexity Region (SEG)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHiiskkalaaqqasantalPGQGTTINVNDASPSVKKGCCST
Disordered region (IsUnstruct)
******TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR***************LSFLETSALEATNVEKAFQTILTEIYHIISKKALA*********************************
Disordered Region (DISOPRED)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY************************************KGCCS*
Disordered Region (DISEMBL)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK*********NTALPGQGTTINVNDA***********
Disordered Region (DISPRO)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKAL**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q40193	216	Ras-related protein Rab11	N/A	no	0.987	0.745	0.881	3e-81
Q9LNW1	214	Ras-related protein RABA2	yes	no	0.975	0.742	0.875	5e-80
Q39434	214	Ras-related protein Rab2B	N/A	no	0.975	0.742	0.888	6e-80
Q96283	217	Ras-related protein RABA2	no	no	0.987	0.741	0.864	5e-75
Q9FIF9	217	Ras-related protein RABA2	no	no	0.987	0.741	0.858	2e-74
Q40523	216	Ras-related protein Rab11	N/A	no	0.987	0.745	0.850	6e-72
Q40723	217	Ras-related protein RGP2	no	no	0.981	0.737	0.726	7e-64
O04486	217	Ras-related protein RABA2	no	no	0.981	0.737	0.722	6e-63
Q40194	218	Ras-related protein Rab11	N/A	no	0.987	0.738	0.666	2e-60
Q39572	216	Ras-related protein YPTC6	N/A	no	0.963	0.726	0.682	9e-59

>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1

 Score =  300 bits (767), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLRAV+E+DG +L+EKEGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A+A  ++PGQGTTINV D S + KKGCCST
Sbjct: 176 IVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216

Lotus japonicus (taxid: 34305)

>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2 SV=2

 Score =  296 bits (757), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 141/161 (87%), Positives = 153/161 (95%), Gaps = 2/161 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NVLRWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLR+V +EDG SLAEKEGLSFLETSALEATN+EKAFQTIL+EIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+A+ N  LPGQGT IN++D+S + +KGCCST
Sbjct: 176 IISKKALAAQEAAGN--LPGQGTAINISDSSATNRKGCCST 214

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1

 Score =  295 bits (756), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 151/161 (93%), Gaps = 2/161 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDL HLRAV+EEDG +LAEKEGLSFLETSALEA N+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+AS+N  LPGQGTTINV DAS + ++ CCST
Sbjct: 176 IISKKALAAQEASSN--LPGQGTTINVADASANQRRSCCST 214

Beta vulgaris (taxid: 161934)

>sp|Q96283|RAA2C_ARATH Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4

 Score =  279 bits (714), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/162 (86%), Positives = 149/162 (91%), Gaps = 1/162 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD
Sbjct: 56  VEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLR+V EEDG SLAEKEGLSFLETSALEATNVEKAFQTIL EIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYH 175

Query: 123 IISKK-ALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKK   A + A+AN+A+PGQGTTINV+D S   K+ CCS+
Sbjct: 176 IISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2 SV=1

 Score =  277 bits (709), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/162 (85%), Positives = 149/162 (91%), Gaps = 1/162 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNK+DLNHLR+V EEDG +LAE EGLSFLETSALEATNVEKAFQT+L EIYH
Sbjct: 116 SNIVIMMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYH 175

Query: 123 IISKK-ALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKK   A + A+AN+A+PGQGTTINV D S + K+GCCST
Sbjct: 176 IISKKALAAQEAAAANSAIPGQGTTINVEDTSGAGKRGCCST 217

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40523|RB11A_TOBAC Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1

 Score =  269 bits (687), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 151/161 (93%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL YDITKRQTFDNV RWLRELRDH D
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVI++AGNKSDL HLRAV+E+D  +L +KEGLSFLETSALEA NV+KAFQTILT+IYH
Sbjct: 116 SNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+A+A+TALPGQGTTINV+D S +VK+GCCST
Sbjct: 176 IISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216

Nicotiana tabacum (taxid: 4097)

>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2

 Score =  242 bits (618), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 141/161 (87%), Gaps = 1/161 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +EGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ+FDNV RWLRELRDHAD
Sbjct: 56  MEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           S+IVIMM GNKSDL HLRAV+E++G +LAEKEGL FLETSA+EA NVE+AFQTI+TE+Y 
Sbjct: 116 SSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYG 175

Query: 123 IISKK-ALAAQQASANTALPGQGTTINVNDASPSVKKGCCS 162
           I+++K   A + A+A+  LP QG TI+++ A+ + K+ CCS
Sbjct: 176 IVNRKALAAKEAAAASAPLPSQGKTISIDSAAGNTKRACCS 216

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1

 Score =  239 bits (610), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 136/162 (83%), Gaps = 2/162 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEG+TVKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHAD
Sbjct: 56  VEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIM+ GNK+DL HLRAV  ED  S AEKEGLSF+ETSALEA NVEKAFQTIL+E+Y 
Sbjct: 116 SNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPS-VKKGCCST 163
           IISKK++++ Q +AN  +  +G TI+V   S S  KK CCS+
Sbjct: 176 IISKKSISSDQTTANANIK-EGQTIDVAATSESNAKKPCCSS 216

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/162 (66%), Positives = 130/162 (80%), Gaps = 1/162 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+ K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+R TF+N  RWL+ELRDH D
Sbjct: 57  VDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTD 116

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            NIV+M+ GNKSDL HL AV  EDG S AE+E L F+ETSALEATNVE AF  +LT+IY 
Sbjct: 117 PNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYR 176

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKK-GCCST 163
           I+SK+A+ A  + +++ LP +G TINV + S  +K+ GCCST
Sbjct: 177 IVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218

Lotus japonicus (taxid: 34305)

>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1

 Score =  225 bits (574), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/164 (68%), Positives = 127/164 (77%), Gaps = 7/164 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK  TF+NV RWL+ELRDHAD
Sbjct: 56  VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIM+ GNKSDL HLR V  E   +  E+EGLSF+ETSALE+TNVEKAFQ ILTEIYH
Sbjct: 116 SNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTI----NVNDASPSVKKGCCS 162
           I+SKK L ++    N    G+G  +    N +D     K GCCS
Sbjct: 176 IVSKKVLDSED---NRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224086271	216	predicted protein [Populus trichocarpa]	0.987	0.745	0.900	3e-81
255647659	216	unknown [Glycine max]	0.987	0.745	0.881	8e-80
356538966	216	PREDICTED: ras-related protein Rab11C-li	0.987	0.745	0.881	9e-80
3024501	216	RecName: Full=Ras-related protein Rab11C	0.987	0.745	0.881	2e-79
388491774	215	unknown [Medicago truncatula]	0.981	0.744	0.894	2e-79
388517625	216	unknown [Lotus japonicus]	0.987	0.745	0.881	2e-79
258589865	216	RabA2 [Phaseolus vulgaris]	0.987	0.745	0.881	4e-79
356542139	216	PREDICTED: ras-related protein Rab11C-li	0.981	0.740	0.881	4e-79
255558942	216	protein with unknown function [Ricinus c	0.987	0.745	0.875	2e-78
15222396	214	RAB GTPase homolog A2B [Arabidopsis thal	0.975	0.742	0.875	2e-78

>gi|224086271|ref|XP_002307838.1| predicted protein [Populus trichocarpa] gi|222853814|gb|EEE91361.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 145/161 (90%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKTVKAQIWDTAGQERYRAITSAYYRGAVGA LVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAFLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLRAV EEDGH+LAEKEGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRAVQEEDGHALAEKEGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKK LAAQ+A+AN+ +PGQGTTINV DAS + KKGCCST
Sbjct: 176 IISKKTLAAQEAAANSTVPGQGTTINVADASGNTKKGCCST 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647659|gb|ACU24291.1| unknown [Glycine max]

 Score =  301 bits (770), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDL+HLRAV+E+DG +LAE+EGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A+  T LPGQGTTINV DAS + K+GCCST
Sbjct: 176 IVSKKALAAQEAAVGTTLPGQGTTINVGDASGNTKRGCCST 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538966|ref|XP_003537971.1| PREDICTED: ras-related protein Rab11C-like [Glycine max]

 Score =  300 bits (769), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDL+HLRAV+E+DG +LAE+EGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A+  T LPGQGTTINV DAS + K+GCCST
Sbjct: 176 IVSKKALAAQEAAVGTTLPGQGTTINVGDASGNTKRGCCST 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3024501|sp|Q40193.1|RB11C_LOTJA RecName: Full=Ras-related protein Rab11C gi|1370146|emb|CAA98179.1| RAB11C [Lotus japonicus]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLRAV+E+DG +L+EKEGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A+A  ++PGQGTTINV D S + KKGCCST
Sbjct: 176 IVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491774|gb|AFK33953.1| unknown [Medicago truncatula]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/161 (89%), Positives = 154/161 (95%), Gaps = 1/161 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVNRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLRAV+E+DG +LAEKEGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRAVSEDDGQALAEKEGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A A T+LPGQGTTINV D+S + K+GCCST
Sbjct: 176 IVSKKALAAQEA-AGTSLPGQGTTINVADSSANTKRGCCST 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517625|gb|AFK46874.1| unknown [Lotus japonicus]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLRAV+E+DG +LAEK+GLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRAVSEDDGGALAEKDGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A+A  ++PGQGTTINV D S + KKGCCST
Sbjct: 176 IVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|258589865|gb|ACV82919.1| RabA2 [Phaseolus vulgaris]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 151/161 (93%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDL+HLRAV E+DG +LAE+EGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLSHLRAVYEDDGQNLAEREGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           I+SKKALAAQ+A   T LPGQGTTINV DAS + K+GCCST
Sbjct: 176 IVSKKALAAQEAGVGTTLPGQGTTINVGDASGNTKRGCCST 216

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542139|ref|XP_003539528.1| PREDICTED: ras-related protein Rab11C-like isoform 1 [Glycine max] gi|356542141|ref|XP_003539529.1| PREDICTED: ras-related protein Rab11C-like isoform 2 [Glycine max]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 141/160 (88%), Positives = 152/160 (95%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDL+HLRAV+E+DG +LAE+EGLSFLETSALEATN+EKAFQTILTEIYH
Sbjct: 116 SNIVIMMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCS 162
           I+SKKALAAQ+A+  T LPGQGTTINV DAS + K+GCCS
Sbjct: 176 IVSKKALAAQEAAVGTILPGQGTTINVGDASGNTKRGCCS 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558942|ref|XP_002520494.1| protein with unknown function [Ricinus communis] gi|223540336|gb|EEF41907.1| protein with unknown function [Ricinus communis]

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/161 (87%), Positives = 150/161 (93%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVI+MAGNKSDLNHLRAV EEDG +LAE+E LSFLETSALEATNVEKAFQTILTEIYH
Sbjct: 116 SNIVILMAGNKSDLNHLRAVAEEDGQALAERESLSFLETSALEATNVEKAFQTILTEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+A+ N+ LPGQGTTINV D S + K+ CCST
Sbjct: 176 IISKKALAAQEAAGNSTLPGQGTTINVADTSGNTKRSCCST 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222396|ref|NP_172221.1| RAB GTPase homolog A2B [Arabidopsis thaliana] gi|297843530|ref|XP_002889646.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332320580|sp|Q9LNW1.2|RAA2B_ARATH RecName: Full=Ras-related protein RABA2b; Short=AtRABA2b gi|297335488|gb|EFH65905.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|332190000|gb|AEE28121.1| RAB GTPase homolog A2B [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/161 (87%), Positives = 153/161 (95%), Gaps = 2/161 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NVLRWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLR+V +EDG SLAEKEGLSFLETSALEATN+EKAFQTIL+EIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+A+ N  LPGQGT IN++D+S + +KGCCST
Sbjct: 176 IISKKALAAQEAAGN--LPGQGTAINISDSSATNRKGCCST 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.987	0.741	0.802	2.3e-64
TAIR|locus:2168469	217	RABA2D "RAB GTPase homolog A2D	0.987	0.741	0.796	4.7e-64
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.975	0.742	0.795	6e-64
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.981	0.737	0.672	1.5e-51
ZFIN|ZDB-GENE-041114-53	215	rab11a "RAB11a, member RAS onc	0.730	0.553	0.806	2.6e-47
UNIPROTKB|Q5ZJN2	216	RAB11A "Ras-related protein Ra	0.730	0.550	0.789	5.4e-47
UNIPROTKB|F2Z4D5	216	RAB11A "Ras-related protein Ra	0.730	0.550	0.789	5.4e-47
UNIPROTKB|P62490	216	RAB11A "Ras-related protein Ra	0.730	0.550	0.789	5.4e-47
UNIPROTKB|P62491	216	RAB11A "Ras-related protein Ra	0.730	0.550	0.789	5.4e-47
UNIPROTKB|Q52NJ1	216	RAB11A "Ras-related protein Ra	0.730	0.550	0.789	5.4e-47

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 130/162 (80%), Positives = 135/162 (83%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             VEGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD
Sbjct:    56 VEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 115

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
             SNIVIMMAGNKSDLNHLR+V EEDG SLAEKEGLSFLETSALEATNVEKAFQTIL EIYH
Sbjct:   116 SNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYH 175

Query:   123 XXXXXXXXXXXXXXXXXX-PGQGTTINVNDASPSVKKGCCST 163
                                PGQGTTINV+D S   K+ CCS+
Sbjct:   176 IISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2168469 RABA2D "RAB GTPase homolog A2D" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 129/162 (79%), Positives = 135/162 (83%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD
Sbjct:    56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 115

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
             SNIVIMMAGNK+DLNHLR+V EEDG +LAE EGLSFLETSALEATNVEKAFQT+L EIYH
Sbjct:   116 SNIVIMMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYH 175

Query:   123 XXXXXXXXXXXXXXXXXX-PGQGTTINVNDASPSVKKGCCST 163
                                PGQGTTINV D S + K+GCCST
Sbjct:   176 IISKKALAAQEAAAANSAIPGQGTTINVEDTSGAGKRGCCST 217

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 128/161 (79%), Positives = 138/161 (85%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NVLRWLRELRDHAD
Sbjct:    56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHAD 115

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
             SNIVIMMAGNKSDLNHLR+V +EDG SLAEKEGLSFLETSALEATN+EKAFQTIL+EIYH
Sbjct:   116 SNIVIMMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYH 175

Query:   123 XXXXXXXXXXXXXXXXXXPGQGTTINVNDASPSVKKGCCST 163
                               PGQGT IN++D+S + +KGCCST
Sbjct:   176 IISKKALAAQEAAGNL--PGQGTAINISDSSATNRKGCCST 214

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 109/162 (67%), Positives = 122/162 (75%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             VEG+TVKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHAD
Sbjct:    56 VEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHAD 115

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
             SNIVIM+ GNK+DL HLRAV  ED  S AEKEGLSF+ETSALEA NVEKAFQTIL+E+Y 
Sbjct:   116 SNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175

Query:   123 XXXXXXXXXXXXXXXXXXPGQGTTINVNDASPS-VKKGCCST 163
                                 +G TI+V   S S  KK CCS+
Sbjct:   176 IISKKSISSDQTTANANIK-EGQTIDVAATSESNAKKPCCSS 216

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

ZFIN|ZDB-GENE-041114-53 rab11a "RAB11a, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 96/119 (80%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSFLETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFLETSALDSTNVETAFQTILTEIY 173

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0001525 "angiogenesis" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0032402 "melanosome transport" evidence=IMP

UNIPROTKB|Q5ZJN2 RAB11A "Ras-related protein Rab-11A" [Gallus gallus (taxid:9031)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=ISS

UNIPROTKB|F2Z4D5 RAB11A "Ras-related protein Rab-11A" [Bos taurus (taxid:9913)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62490 RAB11A "Ras-related protein Rab-11A" [Canis lupus familiaris (taxid:9615)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032402 "melanosome transport" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62491 RAB11A "Ras-related protein Rab-11A" [Homo sapiens (taxid:9606)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

GO:0048169 "regulation of long-term neuronal synaptic plasticity" evidence=IEA

GO:0051223 "regulation of protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=NAS

GO:0048227 "plasma membrane to endosome transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0032154 "cleavage furrow" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0003924 "GTPase activity" evidence=IDA

GO:0031175 "neuron projection development" evidence=IMP

GO:0072659 "protein localization to plasma membrane" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0032402 "melanosome transport" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0006833 "water transport" evidence=TAS

GO:0030659 "cytoplasmic vesicle membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q52NJ1 RAB11A "Ras-related protein Rab-11A" [Sus scrofa (taxid:9823)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 94/119 (78%), Positives = 106/119 (89%)

Query:     3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
             V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct:    55 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114

Query:    63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
             SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct:   115 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032402 "melanosome transport" evidence=ISS

GO:0072659 "protein localization to plasma membrane" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0055038 "recycling endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40523	RB11A_TOBAC	No assigned EC number	0.8509	0.9877	0.7453	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6380	0.9509	0.7175	yes	no
Q9LNW1	RAA2B_ARATH	No assigned EC number	0.8757	0.9754	0.7429	yes	no
Q40193	RB11C_LOTJA	No assigned EC number	0.8819	0.9877	0.7453	N/A	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.6380	0.9509	0.7175	yes	no
P36412	RB11A_DICDI	No assigned EC number	0.575	0.9509	0.7242	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.6380	0.9509	0.7175	yes	no
P17610	YPT3_SCHPO	No assigned EC number	0.5783	0.9693	0.7383	yes	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6319	0.9509	0.7175	yes	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6380	0.9509	0.7175	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.8881	0.9754	0.7429	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.6380	0.9509	0.7175	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6380	0.9509	0.7175	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6380	0.9509	0.7175	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6380	0.9509	0.7175	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-112
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	5e-85
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	7e-76
pfam00071	162	pfam00071, Ras, Ras family	3e-64
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-62
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-54
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-54
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-52
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-50
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	9e-50
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	6e-48
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-46
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-44
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-44
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-43
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-43
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-41
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-41
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-38
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-37
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-36
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-35
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-34
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-33
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-32
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	8e-32
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-31
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	5e-31
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-29
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-28
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	9e-28
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-27
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-27
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-26
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-26
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	5e-25
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-24
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-24
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-23
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-23
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-22
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-22
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-22
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-21
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-20
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-20
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-19
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-18
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-18
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-18
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-17
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-17
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-16
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-15
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-15
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-15
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-14
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-14
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-13
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-13
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-12
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-11
pfam08477	116	pfam08477, Miro, Miro-like protein	8e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-10
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-10
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	5e-10
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	9e-10
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-09
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-08
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-08
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	4e-08
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-08
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	4e-07
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-06
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-06
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	4e-06
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	7e-05
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	3e-04
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-04
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	8e-04

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  318 bits (815), Expect = e-112
 Identities = 145/161 (90%), Positives = 152/161 (94%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV RWLRELRDHAD
Sbjct: 56  VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIMMAGNKSDLNHLR+V EEDG +LAEKEGLSFLETSALEATNVEKAFQTIL EIYH
Sbjct: 116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH 175

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCST 163
           IISKKALAAQ+A+AN+ LPGQGTTINV D S + K+GCCST
Sbjct: 176 IISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  246 bits (630), Expect = 5e-85
 Identities = 93/119 (78%), Positives = 107/119 (89%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK+ TF+NV RWL+ELRDHAD
Sbjct: 47  IDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD 106

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  E+  + AEK GLSF+ETSAL+ TNVE+AF+ +LTEIY
Sbjct: 107 SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  223 bits (570), Expect = 7e-76
 Identities = 73/121 (60%), Positives = 93/121 (76%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GK VK QIWDTAGQER+R+ITS+YYRGAVGALLVYDIT R++F+N+  WL+ELR++A 
Sbjct: 44  VDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS 103

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+VIM+ GNKSDL   R V+ E+  + AE+ GL F ETSA   TNVE+AF+ +  EI  
Sbjct: 104 PNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163

Query: 123 I 123
            
Sbjct: 164 R 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  193 bits (493), Expect = 3e-64
 Identities = 68/119 (57%), Positives = 87/119 (73%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKTVK QIWDTAGQER+RA+   YYRGA G LLVYDIT R +F+NV +WL E+  HAD
Sbjct: 43  VDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD 102

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
            N+ I++ GNK DL   R V+ E+G +LA++ GL F+ETSA    NVE+AF+ +  EI 
Sbjct: 103 ENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  188 bits (479), Expect = 4e-62
 Identities = 63/116 (54%), Positives = 89/116 (76%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+GK VK QIWDTAGQER+R+ITS+YYRGA GA+LVYD+T R++F+N+ +WL EL+++
Sbjct: 42  IEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEY 101

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A  NI I++ GNKSDL   R V+ E+    A++ GL F ETSA    NV++AF+++
Sbjct: 102 APPNIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  169 bits (431), Expect = 1e-54
 Identities = 66/119 (55%), Positives = 89/119 (74%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R H++
Sbjct: 48  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN 107

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SN+ IM+ GNK DL   R V+ E+G + A + GL F+ETSA  A+NVE+AF     EIY
Sbjct: 108 SNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  167 bits (425), Expect = 9e-54
 Identities = 59/118 (50%), Positives = 87/118 (73%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQER+R IT++YYRGA+G +LVYDIT  ++F+N+  W+R + +HA 
Sbjct: 47  LDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS 106

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            ++  M+ GNK D+   R V++E+G +LA + G+ FLETSA    NVE+AF T+  +I
Sbjct: 107 EDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  163 bits (416), Expect = 2e-52
 Identities = 55/121 (45%), Positives = 80/121 (66%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++  TVK +IWDTAGQERYR++   YYRGA  A++VYDIT  ++F+    W++EL++H
Sbjct: 43  VNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEH 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              NIVI +AGNK+DL   R V+ E+    A++ GL F+ETSA    NV + F  I  ++
Sbjct: 103 GPPNIVIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

Query: 121 Y 121
            
Sbjct: 163 P 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  158 bits (402), Expect = 2e-50
 Identities = 61/118 (51%), Positives = 86/118 (72%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKTVK QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 46  LDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS 105

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V   +    A++ G+ FLETSA  ATNVE+AF T+  EI
Sbjct: 106 ENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  158 bits (401), Expect = 9e-50
 Identities = 75/164 (45%), Positives = 100/164 (60%), Gaps = 8/164 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+
Sbjct: 50  IDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN 109

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           +N+ IM+ GNK DL H RAV+ E+G   A++ GL F+E SA  A NVE+AF     +IY 
Sbjct: 110 ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169

Query: 123 IISKKALAAQQASAN-----TALPGQGTTINVNDASPSVKKGCC 161
            I          S        A+PG        D + S   GCC
Sbjct: 170 KIQDGVFDVSNESYGIKVGYGAIPGASGG---RDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  152 bits (386), Expect = 6e-48
 Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK VK QIWDTAGQER+R IT +YYR A GA++ YDIT+R +F++V  W+ E+  +  
Sbjct: 47  IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA 106

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI 120
           SN+V+++ GNK DL   R V  E+  +LAE  G L+ LETSA E++NVE+AF  + TE+
Sbjct: 107 SNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  150 bits (380), Expect = 2e-46
 Identities = 67/169 (39%), Positives = 93/169 (55%), Gaps = 13/169 (7%)

Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
           I  G  +K Q+WDTAGQER+R+IT +YYR +VG LLV+DIT R++F++V  WL E R H 
Sbjct: 46  IEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI 105

Query: 62  D-SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
                V ++ G+K DL   R VT E+   LA+  G+ ++ETSA    NVE+AF+ +  EI
Sbjct: 106 QPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165

Query: 121 YHIISKKALAAQQA--------SANTALPGQGTTINVNDASPSVKKGCC 161
           Y  I +  L A            A  A   +  +        S +K CC
Sbjct: 166 YERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFA----SPEKSCC 210

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  144 bits (364), Expect = 1e-44
 Identities = 63/111 (56%), Positives = 80/111 (72%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GK+VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R++F+ +  WL + R  A 
Sbjct: 44  VGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLAS 103

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
            +IVI++ GNK DL   R VT  +    A++ GL FLETSAL   NVE+AF
Sbjct: 104 PDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  142 bits (359), Expect = 8e-44
 Identities = 61/119 (51%), Positives = 81/119 (68%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+ +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++  WL + R+  +
Sbjct: 46  VNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 105

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
            N VI + GNK+DL   R VT E+    A++ GL FLE SA    NVE AF     +IY
Sbjct: 106 PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  141 bits (357), Expect = 2e-43
 Identities = 51/120 (42%), Positives = 83/120 (69%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M V+ KTV+ Q+WDTAGQER+R++  +Y R +  A++VYDIT RQ+FDN  +W+ ++RD 
Sbjct: 42  MYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE 101

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             ++++I++ GNK+DL+  R V+ E+G   A++    F+ETSA    NV++ F+ I   +
Sbjct: 102 RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  140 bits (355), Expect = 2e-43
 Identities = 59/121 (48%), Positives = 83/121 (68%), Gaps = 2/121 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+GK VK  IWDTAGQER+R +TS+YYRGA G +LVYD+T+R TFDN+  WL EL  +
Sbjct: 42  VTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTY 101

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
           + + + V M+ GNK D  + R VT E+G   A K  + F+ETSA     V++AF+ ++ +
Sbjct: 102 STNPDAVKMLVGNKIDKEN-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEK 160

Query: 120 I 120
           I
Sbjct: 161 I 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  137 bits (346), Expect = 1e-41
 Identities = 61/122 (50%), Positives = 86/122 (70%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G  VK QIWDTAGQER+R++T AYYR A   LL+YD+T + +FDN+  WL E+ ++
Sbjct: 43  VTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEY 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A S++VIM+ GNK+D++  R V  EDG  LA++ G+ F+ETSA    NVE AF  +  E+
Sbjct: 103 AQSDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Query: 121 YH 122
            H
Sbjct: 163 KH 164

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  135 bits (342), Expect = 3e-41
 Identities = 47/120 (39%), Positives = 70/120 (58%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + GK +   IWDTAGQERY A+   YYR A GA+LVYDIT   +F  V +W++EL+  
Sbjct: 42  VNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQM 101

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             +NI +++ GNK DL   R V++ +    A+  G    ETSA     +E+ F ++   +
Sbjct: 102 RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  127 bits (321), Expect = 4e-38
 Identities = 48/118 (40%), Positives = 78/118 (66%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++G+ +K QIWDTAGQER+R+IT +YYR A   +L YDIT  ++F  +  WLRE+  +A+
Sbjct: 51  IKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN 110

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           + ++ ++ GNK DL   R V+++     ++ + + +LETSA E+ NVEK F  +   +
Sbjct: 111 NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  124 bits (312), Expect = 9e-37
 Identities = 52/115 (45%), Positives = 77/115 (66%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
           K +K QIWDTAGQERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ ++  N 
Sbjct: 48  KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 107

Query: 66  VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +++ GNK D+   R V+ E G  LA++ G  F E SA E  NV++ F+ ++  I
Sbjct: 108 QVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  124 bits (314), Expect = 1e-36
 Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 9/161 (5%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + G+ VK QIWDTAGQER+R ITS YYRG  G ++VYD+T  ++F NV RWL+E+  +
Sbjct: 48  VEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            D  +  ++ GNK+D    + V  ED +  A + G+S  ETSA E  NVE+ F       
Sbjct: 108 CDD-VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC----- 161

Query: 121 YHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
              I++  L A++ +       Q   +     +   KK CC
Sbjct: 162 ---ITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  119 bits (302), Expect = 3e-35
 Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD-HA 61
           V+G+T    I DTAGQE + A+   Y R   G +LVY IT R++F+ +     ++     
Sbjct: 42  VDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKD 101

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             ++ I++ GNK DL + R V+ E+G +LAE+ G  FLETSA    N+++ F T++ EI
Sbjct: 102 KEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  119 bits (299), Expect = 1e-34
 Identities = 53/114 (46%), Positives = 77/114 (67%), Gaps = 1/114 (0%)

Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS- 63
              V  Q+WDTAGQER+R++T+A++R A+G LL++D+T  Q+F NV  W+ +L+ HA   
Sbjct: 60  AFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCE 119

Query: 64  NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           N  I++ GNK+DL   R V+E     LA+K G+ + ETSA    NVEKA +T+L
Sbjct: 120 NPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  117 bits (294), Expect = 1e-33
 Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 9/164 (5%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRD 59
           + V GK +K  IWDTAGQER+R +TS+YYR A G +LVYD+T+R+TF N+   W +E+  
Sbjct: 55  LTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL 114

Query: 60  HA-DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
           ++ + + V M+ GNK D    R V+ E+G +LA++ G  FLE SA    NVE+ F+ +  
Sbjct: 115 YSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELAL 174

Query: 119 EIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCS 162
           +I  + S     +     N             +  P    GCCS
Sbjct: 175 KIMEVPSLLEEGSTAVKRNILKQKP-------EHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  115 bits (288), Expect = 9e-33
 Identities = 50/119 (42%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK ++ QIWDTAGQER+ +ITSAYYR A G +LVYDITK++TFD++ +W++ +  +A 
Sbjct: 44  LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 103

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
            +  +++ GNK D    R +T + G   A++  G+ F E SA +  NV++ F  ++ +I
Sbjct: 104 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  112 bits (281), Expect = 5e-32
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ--TFDNVLRWLRELRDH 60
            +GKT K  + DTAGQE Y AI   YYR    +L V+DI        + + +  +E+  H
Sbjct: 46  EDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHH 105

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
           A+S + I++ GNK DL   + +        A+  G   +  SA    N++ AF+ +  
Sbjct: 106 AESGVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  111 bits (280), Expect = 8e-32
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 19/141 (13%)

Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
            V+ + V  QIWDTAGQER++++  A+YRGA   +LVYD+T  ++F+++  W  E    A
Sbjct: 43  TVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQA 102

Query: 62  DSN-------IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAF 113
                     +V+   GNK DL   R V+ +      + +G + + ETSA EA NV++AF
Sbjct: 103 SPRDPENFPFVVL---GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAF 159

Query: 114 QTILTEIYHIISKKALAAQQA 134
           +T        I++ AL  ++ 
Sbjct: 160 ET--------IARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  110 bits (277), Expect = 2e-31
 Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           ++G+     I DTAGQE + A+   Y R   G LLVY IT RQ+F+ + +  RE  LR  
Sbjct: 43  IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQILRVK 101

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              ++ I++ GNK DL   R V+ E+G  LA + G  FLETSA E  NV++AF  ++ EI
Sbjct: 102 DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  109 bits (275), Expect = 5e-31
 Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           ++G+     I DTAGQE + A+   Y R   G LLVY IT RQ+F+ + +  RE  LR  
Sbjct: 45  IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQILRVK 103

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              ++ I++ GNK DL + R V+ E+G  LA + G  FLETSA E  NV++AF  ++ EI
Sbjct: 104 DRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  104 bits (261), Expect = 4e-29
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V  K V+   +D +G   Y  + + +Y+   G LLVYD+T RQ+F+ +  WL+E++  
Sbjct: 42  VSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE 101

Query: 61  ADS-----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT 115
                   NIV+++  NK DL   RAV+E++G   AE +G  + ETSA     V + FQT
Sbjct: 102 GGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQT 161

Query: 116 ILTEI 120
           + + I
Sbjct: 162 LFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  104 bits (260), Expect = 5e-29
 Identities = 50/118 (42%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  V+ QIWDTAGQERY+ IT  YYR A G  LVYDI+  +++ ++++W+ ++ ++A 
Sbjct: 44  VDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP 103

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             +  ++ GNK+D    R V +E G+ LA++ G+ F ETSA    N++++F T LTE+
Sbjct: 104 EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF-TRLTEL 160

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  102 bits (255), Expect = 6e-28
 Identities = 46/122 (37%), Positives = 75/122 (61%), Gaps = 3/122 (2%)

Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELR 58
           +V+G+    ++ DTAGQE Y A+   + R   G +LVY IT R TF+ V R+   ++ ++
Sbjct: 41  VVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVK 100

Query: 59  DHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
           D + +++ IM+ GNK D  + R V+ E+G +LA + G  F+E SA    NVE+AF T++ 
Sbjct: 101 DESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR 160

Query: 119 EI 120
            +
Sbjct: 161 AL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  101 bits (254), Expect = 9e-28
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+ VK Q+WDT+GQ R+  I  +Y RGA G +LVYDIT R +FD + RW++E+ +H
Sbjct: 48  ILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A   +  ++ GN+  L   R V  E   + AE+ G++F E S L   N+ ++F    TE+
Sbjct: 108 A-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF----TEL 162

Query: 121 YHII 124
             I+
Sbjct: 163 ARIV 166

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  100 bits (252), Expect = 2e-27
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 14/164 (8%)

Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH--- 60
               V+ Q+WD AGQER+  +T  YY+GAVGA++V+D+T+  TF+ VL+W  +L      
Sbjct: 46  PNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL 105

Query: 61  -ADSNIVIMMAGNKSDLNHLR-AVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTIL 117
                I  ++  NK DL   R A   E      ++ G   + ETSA E  N+E+A + ++
Sbjct: 106 PNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLV 165

Query: 118 TEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
             I        L   +   +             + + S  K CC
Sbjct: 166 KNI--------LKNDKGLQSPEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 99.8 bits (248), Expect = 4e-27
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           V+ Q+WDTAGQER+R++  +Y R +  A++VYDIT RQ+F+N  +W++++ +    +++I
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88

Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            + GNK+DL  LR VT E+G   A++    F ETSA    N++  F+ I  ++
Sbjct: 89  ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141

Length = 176

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 99.4 bits (248), Expect = 4e-27
 Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRD 59
           +++G+ V+  I DTAGQE Y AI   Y+R   G LLV+ IT  ++F   L   RE  LR 
Sbjct: 42  VLDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFT-ALAEFREQILRV 100

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+ +++ GNK DL   R V+ E+  +LAE+ G++++ETSA    NV+K F  ++ E
Sbjct: 101 KEDDNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVRE 160

Query: 120 IY 121
           I 
Sbjct: 161 IR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 98.1 bits (245), Expect = 2e-26
 Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIM 68
           +I DTAGQ+ Y  +   Y  G  G +LVY +T R++F+ V++ + +  L      ++ I+
Sbjct: 52  EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIV 110

Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           + GNKSDL+  R V+ E+G  LAE  G +FLE+SA E  NVE+AF+ ++ EI
Sbjct: 111 LVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 98.9 bits (246), Expect = 2e-26
 Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDH 60
               + +K Q+WDTAGQE YR++   YYRGA G L+VYD T R+ + +    WL ELR+ 
Sbjct: 48  EPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELREL 107

Query: 61  ADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA---EKEGLSFLETSA-- 103
           A  ++ I++ GNK DL               R V        A   E    + LETSA  
Sbjct: 108 APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKS 167

Query: 104 LEATNVEKAFQTILTEIYHIISKK 127
           L   NV + F+ +L ++   I K 
Sbjct: 168 LTGPNVNELFKELLRKLLEEIEKL 191

Length = 219

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 94.9 bits (236), Expect = 5e-25
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M+V  + V   IWDTAG ERY A++  YYRGA  A++ YD+T   +F+    W++EL++ 
Sbjct: 43  MVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQN- 101

Query: 61  ADSNIVIMMAGNKSDL----NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            + +  I + G KSDL      LR V   D    A++      ETS+    NV++ FQ +
Sbjct: 102 LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Query: 117 LTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
             +               + N     +G  +++     S    CC
Sbjct: 162 AEDFVSR-----------ANNQMNTEKG--VDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 92.1 bits (229), Expect = 3e-24
 Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           ++G+  +  I DTAGQE + A+   Y R   G LLV+ +T R +F+ V ++  + LR   
Sbjct: 45  IDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD 104

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
                +++ GNK+DL H R V+ E+G  LA +  + ++ETSA +  NV+KAF
Sbjct: 105 RDEFPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 92.0 bits (229), Expect = 3e-24
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 5/125 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRA--ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58
           + ++G+ V  +I DT GQ++           R A G +LVY IT R +FD V + L+ +R
Sbjct: 40  VTIDGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIR 99

Query: 59  DHA--DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQT 115
           +    D  I +++ GNK+DL H R V+ E+G  LA + G  F E SA E    V+  F  
Sbjct: 100 EIKKRDGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHE 159

Query: 116 ILTEI 120
           +  E+
Sbjct: 160 LCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 91.5 bits (227), Expect = 4e-24
 Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
            EGKT+    WDTAGQER++ + ++YY  A   +LV+D+T++ T+ N+ +W  ELR++  
Sbjct: 44  FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP 103

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             I  ++  NK DL+   +VT++   + AEK  L     SA + TNV K FQ  +  
Sbjct: 104 E-IPCIVVANKIDLD--PSVTQK-KFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           ++ +T    I DTAGQE Y A+   Y R   G L VY IT R +F+ +    RE  LR  
Sbjct: 48  IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI-ASFREQILRVK 106

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
               + +++ GNK DL+  R V+  +G  LA+  G+ FLETSA +  NV++AF  ++ EI
Sbjct: 107 DKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 89.8 bits (223), Expect = 2e-23
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
           ++G+ +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W+ E   H+
Sbjct: 46  IDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS 105

Query: 62  DSNIVI-MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA---LEATNVEKAFQTIL 117
             N V  ++ GNK DL     V  +     A+   +   ETSA    E  +VE  F T+ 
Sbjct: 106 LPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 87.1 bits (216), Expect = 2e-22
 Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I  R++F+++  +  +++  
Sbjct: 42  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV 101

Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V+   G  LA+  G+ ++ETSA     VE+AF T++ E
Sbjct: 102 KDSDDVPMVLVGNKCDLAA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160

Query: 120 I 120
           I
Sbjct: 161 I 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 86.9 bits (215), Expect = 4e-22
 Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +
Sbjct: 47  LEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 106

Query: 61  AD----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           AD     +   ++ GNK D+   +  TEE      +     + ETSA +ATNV  AF+  
Sbjct: 107 ADVKEPESFPFVILGNKIDIPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 166

Query: 117 LTEI 120
           +  +
Sbjct: 167 VRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 85.6 bits (212), Expect = 9e-22
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN 64
            + V+  +WDTAGQE + AIT AYYRGA   +LV+  T R++F+ +  W +E  +    +
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESW-KEKVEAECGD 106

Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
           I +++   K DL     +T E+  +LA++  L    TS  +  NV + F+
Sbjct: 107 IPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 85.2 bits (211), Expect = 2e-21
 Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 4/125 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           ++G+    +I DTAG E++ A+   Y +   G LLVY +T   + + +   LRE  LR  
Sbjct: 44  IDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGE-LREQVLRIK 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTE 119
              N+ +++ GNK+DL   R V+ EDG SL+++ G   F ETSA + TNV++ F  ++ +
Sbjct: 103 DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQ 162

Query: 120 IYHII 124
           I  +I
Sbjct: 163 IICVI 167

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 81.4 bits (201), Expect = 3e-20
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-S 63
             +V+  I+D+AGQE +  +    +       +VYD+T   +F+N  RW+  +R H+   
Sbjct: 50  SDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL 109

Query: 64  NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           +   ++ GNK DL   R V      +LA+   L F ETSA E    E  F ++
Sbjct: 110 HTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 80.6 bits (199), Expect = 8e-20
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 3/120 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+G+    +I DTAG E++ A+   Y +   G +LVY IT + TF N L+ LRE  LR  
Sbjct: 44  VDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTF-NDLQDLREQILRVK 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              ++ +++ GNK DL   R V +E G +LA + G +FLETSA    NV + F  ++ +I
Sbjct: 103 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 79.1 bits (195), Expect = 3e-19
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+      +I DTAG E++ ++   Y +   G ++VY +  +QTF ++ + +R+  +R  
Sbjct: 44  VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVK 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
               + I++ GNK DL   R V+  +G +LAE+ G  F+ETSA   T V + F  I+ ++
Sbjct: 103 GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E++   
Sbjct: 41  VDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC 100

Query: 62  DSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ G K DL                 VT E G +LA++ G + +LE SAL    
Sbjct: 101 -PNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Query: 109 VEKAFQT 115
           V + F+ 
Sbjct: 160 VREVFEE 166

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 76.4 bits (188), Expect = 3e-18
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 4/121 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT +Q+F++ L+ LRE  LR  
Sbjct: 44  VDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFND-LQDLREQILRVK 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTE 119
              ++ +++ GNK DL   R V++E+G +LA + G   FLETSA    NV++ F  ++ +
Sbjct: 103 DTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQ 162

Query: 120 I 120
           I
Sbjct: 163 I 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (188), Expect = 4e-18
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHA 61
           V+GK V   +WDTAGQE Y  +    Y      LL + +    +F+NV   W  E++ + 
Sbjct: 43  VDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC 102

Query: 62  DSNIVIMMAGNKSDL-----------NHLRAVTEEDGHSLAEKEGLS-FLETSALEATNV 109
             N+ I++ G K DL              + +T E+G  LA++ G   ++E SAL    +
Sbjct: 103 -PNVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGL 161

Query: 110 EKAFQTI 116
           ++ F   
Sbjct: 162 KEVFDEA 168

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 3/106 (2%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMM 69
           Q+WDTAGQER++ I S YYRGA   ++V+D+T   + ++  +WL + L+++  S++++ +
Sbjct: 52  QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFL 111

Query: 70  AGNKSDLNH--LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
            G K DL+     A+ E+D   LA +    +   SAL   NV   F
Sbjct: 112 VGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 75.8 bits (187), Expect = 6e-18
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           ++  +WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I
Sbjct: 49  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPI 107

Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+       +    +   K+ L + E SA    N EK F
Sbjct: 108 VLCGNKVDI--KDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 75.3 bits (185), Expect = 1e-17
 Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL--RDHADSNIVIMM 69
           I DTAGQ  + A+   Y R   G ++ Y +T R +F       +EL  R     +I +++
Sbjct: 54  ILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEA-SEFKELITRVRLTEDIPLVL 112

Query: 70  AGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKAL 129
            GNK DL   R VT E+G +LA +    F ETSA     ++ AF  ++ EI    S  AL
Sbjct: 113 VGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 73.9 bits (182), Expect = 6e-17
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADS 63
           GK ++  +WDTAGQE Y  +    Y      L+ Y +    + DNV  +W  E+  H   
Sbjct: 49  GKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCP 107

Query: 64  NIVIMMAGNKSDL-------NHLRA-----VTEEDGHSLAEKEG-LSFLETSALEATNVE 110
              I++ G K+DL       + LRA     VT E G S+A+  G ++++E SA    NV+
Sbjct: 108 GTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVD 167

Query: 111 KAFQTILTEIYHIISKKALAAQ 132
           + F      I   +SK   AA+
Sbjct: 168 EVFD---AAINVALSKSGRAAR 186

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVI 67
           QI DT G  ++ A+           +LVY IT +Q+ +    +   + E++ +    I I
Sbjct: 52  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPI 111

Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           M+ GNK D +  R V+  +G +LA     +F+ETSA    NV++ FQ +L
Sbjct: 112 MLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPI 120

Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+ + R V  +   +   K+ L + E SA    N EK F
Sbjct: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164

Length = 219

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL---RELRDHADSN 64
           V  Q+WD  GQ+    +   Y  GA    LVYDIT  Q+F+N+  WL   +++ + +++ 
Sbjct: 50  VTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETK 109

Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII 124
             +++ GNK+DL H R VT E     A++  +  +  SA     V   FQ I  E+  + 
Sbjct: 110 PKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVK 169

Query: 125 SKKA 128
             +A
Sbjct: 170 LSQA 173

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 68.6 bits (168), Expect = 3e-15
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+ Q+ DTAGQ+ +  +    Y      LL + +    +F N+  +W+ E+R H 
Sbjct: 43  VDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN 102

Query: 62  DSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
               +I++ G ++DL               + V++    +LAEK G   ++E SAL   N
Sbjct: 103 PKAPIILV-GTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN 161

Query: 109 VEKAFQT 115
           +++ F T
Sbjct: 162 LKEVFDT 168

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 68.3 bits (167), Expect = 4e-15
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 10/125 (8%)

Query: 1   MIVEGKTVKAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNV-LRWL 54
             ++   VK  + DT G + +       +     RGA   LLV D T R++ ++  L  L
Sbjct: 40  KELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL 99

Query: 55  RELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHS-LAEKEGLSFLETSALEATNVEKAF 113
           R LR      I I++ GNK DL   R V E      LA+  G+   E SA     V++ F
Sbjct: 100 RRLRKE---GIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Query: 114 QTILT 118
           + ++ 
Sbjct: 157 EKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 67.6 bits (165), Expect = 2e-14
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 43/183 (23%)

Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 71
           IWDTAG+E++  + S Y RGA   +L YD++  Q+ + +      L D A+ + +  + G
Sbjct: 48  IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107

Query: 72  NKSDLNHL-------------------RAVTEEDGHSLAEK--------EGLS------F 98
           NK DL                      R VT ED  +  ++        E LS       
Sbjct: 108 NKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC 167

Query: 99  LETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKK 158
            ETSA    NV++ F+ +   +  +I  +   A +      LP    +          K 
Sbjct: 168 FETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRS----------KS 217

Query: 159 GCC 161
            CC
Sbjct: 218 KCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           ++  +WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 44  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPI 102

Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI-----YH 122
           ++ GNK D+   +   +    +   K+ L + + SA    N EK F  +  ++       
Sbjct: 103 VLCGNKVDVKDRKVKAKSI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160

Query: 123 IISKKALAAQQASANTALPGQ 143
            ++  ALA  +   + AL  Q
Sbjct: 161 FVAMPALAPPEVVMDPALAAQ 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 13/127 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V+G TV   +WDTAGQE Y  +    YRGA   LL + +  + +++NVL +W+ ELR 
Sbjct: 42  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRH 101

Query: 60  HADSNIVIMMAGNKSDL--------NHLRA--VTEEDGHSLAEKEGL-SFLETSALEATN 108
           +A   + I++ G K DL        +H  A  +T   G  L ++ G  +++E S+    N
Sbjct: 102 YA-PGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQN 160

Query: 109 VEKAFQT 115
           V+  F  
Sbjct: 161 VKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 44  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 102

Query: 62  DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL +               V  E+G ++AEK G   +LE SA     
Sbjct: 103 CPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEG 162

Query: 109 VEKAFQT 115
           V + F+ 
Sbjct: 163 VREVFEM 169

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 24/151 (15%)

Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 71
           +WDTAGQE++  +   YY     A++++D+T R T+ NV  W R++    + NI I++ G
Sbjct: 62  VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVG 120

Query: 72  NKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL-------------- 117
           NK D+   R V      +   K+ L + + SA    N EK F  +               
Sbjct: 121 NKVDVKD-RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGA 178

Query: 118 -------TEIYHIISKKALAAQQASANTALP 141
                   +I   +  +A    QA+AN  LP
Sbjct: 179 PALAPEEIQIDPELVAQAEKELQAAANVPLP 209

Length = 215

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VE K VK  +WD  GQ++ R +   YY    G + V D + R+  +     L +L +  +
Sbjct: 38  VEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEE 97

Query: 63  -SNIVIMMAGNKSDLNHLRAVTE 84
                +++  NK DL      +E
Sbjct: 98  LKGAPLLILANKQDLPGALTESE 120

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF---DNVLRWLREL 57
           + V+G T    IWD  G+E  +     + + A   LLVYD+T R++      ++ WL  L
Sbjct: 41  LEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Query: 58  RDHADSNIVIMMAGNK 73
           R      I +++ GNK
Sbjct: 101 RK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+G  V+  +WDTAGQE +  + S  Y      +L + +    + +NV  +WL E+R H 
Sbjct: 43  VDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC 102

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS---------FLETSALEATNVEKA 112
              + +++   K DL   R   +   H+++ +EGL+         +LE SA     V +A
Sbjct: 103 PG-VKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEA 161

Query: 113 F 113
           F
Sbjct: 162 F 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 16/128 (12%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHA 61
           V+ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL+ W  E+R+  
Sbjct: 44  VDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC 103

Query: 62  DSNIVIMMAGNKSDL-----------NHLRA-VTEEDGHSLAEKEG-LSFLETSALEATN 108
             N  +++ G KSDL           N  +  V+ E G +LA++ G  +++E SA  + N
Sbjct: 104 -PNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

Query: 109 -VEKAFQT 115
            V   F+ 
Sbjct: 163 SVRDVFEM 170

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 55.0 bits (132), Expect = 5e-10
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 15/141 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
             V+G+TV   +WDTAGQE Y  + +  Y      ++ + I    +++NV  +W  E+  
Sbjct: 44  TAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCH 103

Query: 60  HADSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N+ I++ G K DL +               +T + G +LA++   + +LE SAL  
Sbjct: 104 HC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQ 162

Query: 107 TNVEKAFQTILTEIYHIISKK 127
             V++ F   +  + +    K
Sbjct: 163 DGVKEVFAEAVRAVLNPTPIK 183

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF---DNVLRWLRELRD 59
           V+G+     ++D   QE    +  +  +     ++VY +T R +F     +   LR  R 
Sbjct: 44  VDGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQ 103

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D  I I++ GNKSDL   R V+ ++G + A      F+ETSA    NV++ F+ I+ +
Sbjct: 104 AED--IPIILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQ 161

Query: 120 I 120
           +
Sbjct: 162 V 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + G  +   IWD  GQ  +  +     + AV  L ++D+T++ T +++  W R+ R    
Sbjct: 44  IRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK 103

Query: 63  SNIVIMMAGNKSDL-------NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT 115
           + I I++ G K DL              +   ++ A K  L F   S   + NV+K F+ 
Sbjct: 104 TAIPILV-GTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIF--CSTSHSINVQKIFKF 160

Query: 116 ILTEIY 121
           +L +++
Sbjct: 161 VLAKVF 166

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 42  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 101

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A E   + +LE SAL  
Sbjct: 102 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160

Query: 107 TNVEKAF 113
             ++  F
Sbjct: 161 RGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V G  V   I DT+G   + A+     +      LVY +   ++F+ V R LRE  L   
Sbjct: 42  VAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-LREEILEVK 100

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTE 119
            D  + I++ GNK D    R V   D  S  E +    F+E SA +  NV + F+ +L +
Sbjct: 101 EDKFVPIVVVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 36  LLVYDITKRQTFDNVLRWLRELRD---------HADSNIVIMMAGNKSDLNHLRAV-TEE 85
           +LV+ +  R++F+ V R   ++ +           +  I +++ GNK+D +  R V  +E
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 86  DGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
               +   E  ++ E SA + +N+++ F+ + +
Sbjct: 136 VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y  A   L+ + I    + +NV  +W+ E+R + 
Sbjct: 44  VDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC 103

Query: 62  DSNIVIMMAGNKSDL----------NHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVE 110
             N+ +++ G K DL               V  +    +A   G   ++E SAL    V+
Sbjct: 104 -PNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVD 162

Query: 111 KAFQ 114
             F+
Sbjct: 163 DVFE 166

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 4   EGKTVKAQIWDTAGQERYRA-----ITS-AYYRGAVGALLVYDITKRQTFDNVLRWLREL 57
           E K ++  +WD  GQE Y A     +TS + Y      LLV+D+        V  WLR++
Sbjct: 47  ERKKIRLNVWDFGGQEIYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQI 100

Query: 58  RDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           +     + VI++ G   D +    + ++  +             S      + +  + I 
Sbjct: 101 KAFGGVSPVILV-GTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIA 159

Query: 118 TE 119
            E
Sbjct: 160 KE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 34/135 (25%), Positives = 72/135 (53%), Gaps = 22/135 (16%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHA 61
           ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL+ W  E+++  
Sbjct: 48  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 107

Query: 62  DSNIVIMMAGNKSDL-----------NHLRA-VTEEDGHSLAEKEG-LSFLETSALEATN 108
             N  +++ G KSDL           NH +  V+ + G ++A++ G  +++E SAL++ N
Sbjct: 108 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Query: 109 VEKAFQTILTEIYHI 123
             +       +I+H+
Sbjct: 167 SVR-------DIFHV 174

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           V  K +   +WD  GQ++ R +   YY    G + V D   R   D     L R L +  
Sbjct: 52  VTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE 111

Query: 62  DSNIVIMMAGNKSDL-NHLRAVTEEDGHSLAEKEGL 96
             + VI++  NK DL + ++A        + EK GL
Sbjct: 112 LRDAVILVFANKQDLPDAMKA------AEITEKLGL 141

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 18/152 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
            E + V+  +WDT+G   Y  +    Y  +   LL +DI++ + FD+ L +W  E+ D+ 
Sbjct: 56  TEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC 115

Query: 62  DSNIVIMMAGNKSDL-----------NHLRA-VTEEDGHSLAEKEGL-SFLETSALEATN 108
             +  I++ G K+DL           N  +A ++ E G ++A++ G  ++LE SA  +  
Sbjct: 116 -PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTS-- 172

Query: 109 VEKAFQTILTEIYHIISKKALAAQQASANTAL 140
            EK+  +I      +   K     + S   +L
Sbjct: 173 -EKSIHSIFRTASLLCINKLSPLAKKSPVRSL 203

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 15/133 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V GK     ++DTAGQE Y  +    Y      L+ + +    +F NV   W+ EL+++A
Sbjct: 43  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 102

Query: 62  DSNIVIMMAGNKSD----------LNHL--RAVTEEDGHSLAEKEGLS-FLETSALEATN 108
             N+  ++ G + D          LN +  + +T E G  LA++ G   ++E SAL    
Sbjct: 103 -PNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKG 161

Query: 109 VEKAFQTILTEIY 121
           ++  F   +  I 
Sbjct: 162 LKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMA 70
           I DT+ + + RA  +A  R A    LVY + +  T + +  +WL  +R      + I++ 
Sbjct: 53  IVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILV 111

Query: 71  GNKSDL---NHLRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAF 113
           GNKSDL   +    + EE    + E +E  + +E SA    NV + F
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 57
           ++WD +G ERY+   S +Y    G + V+D+++R+T  ++ +W  E+
Sbjct: 86  ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132

Length = 334

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 13  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMAG 71
           WD  GQE  R++   YY  + G + V D T R+ F+       + + + A   + +++  
Sbjct: 56  WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLA 115

Query: 72  NKSDLNHLRAVTE-----EDGHSLAEKEGLSFLETSALEATNVEKA 112
           NK DL    +V E     +D  +L  +        SALE   VE+ 
Sbjct: 116 NKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)

Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMA 70
           ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  H       ++ 
Sbjct: 53  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 111

Query: 71  GNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEATNVEKAF 113
           G + DL            N  + +T E G  LA + + + ++E SAL    ++  F
Sbjct: 112 GTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           VE K +K  +WD  GQ++ R +   YY+   G + V D   R+   +    L R L +  
Sbjct: 56  VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE 115

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
             + V+++  NK DL +  + TE     + EK GL 
Sbjct: 116 LRDAVLLVFANKQDLPNAMSTTE-----VTEKLGLH 146

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           V  K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D  
Sbjct: 48  VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDRE 107

Query: 62  DSNIVIMMAGNKSDL 76
             + ++++  NK DL
Sbjct: 108 MRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 15/115 (13%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           ++   ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E ++  
Sbjct: 44  IDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103

Query: 62  DSNIVIMMAGNK----SDLNHLR--------AVTEEDGHSLAEKEG-LSFLETSA 103
             N  +++ G K    +DL+ LR         VT E G  LA + G ++++E S+
Sbjct: 104 -PNAKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSS 157

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-ADSNIV 66
           V  ++WD  GQ R+R++   Y RG    + V D   R+  +     L +L +  +   I 
Sbjct: 44  VTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIP 103

Query: 67  IMMAGNKSDL-NHLRA---VTEEDGHSLAEKEGLSFLETSALEATNV 109
           +++ GNK+DL   L     + + +  S+ ++E +S    SA E TN+
Sbjct: 104 LLVLGNKNDLPGALSVDELIEQMNLKSITDRE-VSCYSISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 4   EGKTVKAQIWDTAGQ----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE 56
           E KT   ++WD  G     E  ++  + +Y    G + V+D+T +++  N+ RW  E
Sbjct: 50  EEKTFYVELWDVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLE 106

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 9   KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
              ++ T GQER++ +     RGAVGA+++ D ++  TF      +  L       +V+ 
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE-EIIDFLTSRNPIPVVV- 126

Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSF--LETSALEATNVEKAFQTIL 117
            A NK DL    A+  E      + E LS   +E  A E          +L
Sbjct: 127 -AINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           VE K +   +WD  GQ++ R +   Y++   G + V D   R+        L R L +  
Sbjct: 39  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDE 98

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99
             + V+++  NK DL +  +  E     + +K GL  L
Sbjct: 99  LRDAVLLVFANKQDLPNAMSAAE-----VTDKLGLHSL 131

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 16/103 (15%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF----DNVLRWLR--E 56
           VE K +   +WD  GQ++ R +   Y++   G + V D   R       D + R L   E
Sbjct: 56  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115

Query: 57  LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99
           LRD      V+++  NK DL +     E     + +K GL  L
Sbjct: 116 LRD-----AVLLVFANKQDLPNAMNAAE-----ITDKLGLHSL 148

Length = 181

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V  K VK  +WD  GQE  R +   Y+      + V D   R   +     L   L +  
Sbjct: 53  VTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE 112

Query: 62  DSNIVIMMAGNKSDL 76
            ++  +++  NK DL
Sbjct: 113 LADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           M+   K +   +WD  GQE+ R +   Y     G + V D +     D   + L+  L++
Sbjct: 37  MLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKN 96

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTE 84
                + +++  NK DL       E
Sbjct: 97  EHIKGVPVVLLANKQDLPGALTAEE 121

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SN 64
           K ++  +WD  GQE  R+  + YY      +LV D T R+        L ++  H D   
Sbjct: 57  KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRK 116

Query: 65  IVIMMAGNKSDL 76
            V+++  NK DL
Sbjct: 117 AVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.98
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.98
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.97
KOG0394	210	consensus Ras-related GTPase [General function pre	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.94
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.94
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.94
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
PTZ00369	189	Ras-like protein; Provisional	99.94
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.94
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.94
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.93
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.93
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.93
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.93
PLN03108	210	Rab family protein; Provisional	99.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.93
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.93
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.93
PLN03118	211	Rab family protein; Provisional	99.93
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.92
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.92
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.92
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.92
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.91
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.91
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.91
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.91
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.91
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.9
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.9
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.9
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.9
KOG0395	196	consensus Ras-related GTPase [General function pre	99.9
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.9
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.89
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.88
PLN00223	181	ADP-ribosylation factor; Provisional	99.88
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.88
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.88
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.88
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.87
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.87
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.87
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.87
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.87
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.86
PTZ00133	182	ADP-ribosylation factor; Provisional	99.86
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.85
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.84
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.84
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.84
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.82
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.81
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.81
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.8
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.8
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.8
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.8
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.79
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.79
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.77
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.76
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.74
PLN00023	334	GTP-binding protein; Provisional	99.73
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.73
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.72
PRK12299	335	obgE GTPase CgtA; Reviewed	99.71
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.71
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.68
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.67
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.67
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.67
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.67
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.67
KOG1673	205	consensus Ras GTPases [General function prediction	99.66
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.65
COG1100	219	GTPase SAR1 and related small G proteins [General	99.65
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.64
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.64
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.64
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.63
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.62
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.62
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.61
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.61
PRK05433	600	GTP-binding protein LepA; Provisional	99.6
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.6
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.59
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.57
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.57
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.56
cd00881	189	GTP_translation_factor GTP translation factor fami	99.55
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.55
PRK04213	201	GTP-binding protein; Provisional	99.54
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.53
PRK12297	424	obgE GTPase CgtA; Reviewed	99.53
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.52
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.51
PRK15494	339	era GTPase Era; Provisional	99.5
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.5
PRK12296	500	obgE GTPase CgtA; Reviewed	99.5
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.5
CHL00189	742	infB translation initiation factor 2; Provisional	99.49
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.49
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.48
PRK03003	472	GTP-binding protein Der; Reviewed	99.48
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.48
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.47
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.47
COG2229	187	Predicted GTPase [General function prediction only	99.47
PRK11058	426	GTPase HflX; Provisional	99.45
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.45
PRK05306	787	infB translation initiation factor IF-2; Validated	99.45
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.44
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.44
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.42
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.42
PRK12298	390	obgE GTPase CgtA; Reviewed	99.42
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.42
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.42
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.41
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.41
PRK00089	292	era GTPase Era; Reviewed	99.4
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.4
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.39
PRK00093	435	GTP-binding protein Der; Reviewed	99.39
PRK12317	425	elongation factor 1-alpha; Reviewed	99.36
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.34
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.34
PRK10218	607	GTP-binding protein; Provisional	99.34
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.33
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.33
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.31
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.3
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.29
PRK00093	435	GTP-binding protein Der; Reviewed	99.29
PRK04004	586	translation initiation factor IF-2; Validated	99.28
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.28
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.27
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.27
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.26
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.25
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.24
PRK14845	1049	translation initiation factor IF-2; Provisional	99.23
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.23
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.22
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.21
COG1159	298	Era GTPase [General function prediction only]	99.2
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.2
PRK12736	394	elongation factor Tu; Reviewed	99.18
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.17
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.16
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.15
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.14
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.13
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.13
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.13
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.11
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.1
PRK09866	741	hypothetical protein; Provisional	99.1
PLN00043	447	elongation factor 1-alpha; Provisional	99.1
PRK12289	352	GTPase RsgA; Reviewed	99.08
PRK12735	396	elongation factor Tu; Reviewed	99.08
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.08
PRK13351	687	elongation factor G; Reviewed	99.04
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.02
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.01
PRK00098	298	GTPase RsgA; Reviewed	99.01
PRK13768	253	GTPase; Provisional	99.0
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.0
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.98
COG1160	444	Predicted GTPases [General function prediction onl	98.98
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.97
KOG1145	683	consensus Mitochondrial translation initiation fac	98.97
COG2262	411	HflX GTPases [General function prediction only]	98.96
PRK12740	668	elongation factor G; Reviewed	98.94
COG0486	454	ThdF Predicted GTPase [General function prediction	98.94
COG1160	444	Predicted GTPases [General function prediction onl	98.93
PRK12288	347	GTPase RsgA; Reviewed	98.93
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.91
CHL00071	409	tufA elongation factor Tu	98.9
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.89
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.89
PTZ00141	446	elongation factor 1- alpha; Provisional	98.87
PRK00049	396	elongation factor Tu; Reviewed	98.87
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.86
PLN03127	447	Elongation factor Tu; Provisional	98.82
PLN03126	478	Elongation factor Tu; Provisional	98.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.8
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.78
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.77
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.77
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.77
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.76
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.75
PRK12739	691	elongation factor G; Reviewed	98.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.75
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.74
COG0536	369	Obg Predicted GTPase [General function prediction	98.72
COG1084	346	Predicted GTPase [General function prediction only	98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.71
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.66
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.57
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.57
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.57
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.57
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.55
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.54
PRK13796	365	GTPase YqeH; Provisional	98.53
KOG0090	238	consensus Signal recognition particle receptor, be	98.51
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.5
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.5
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.48
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.48
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.45
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.41
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.38
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.37
PRK01889	356	GTPase RsgA; Reviewed	98.37
PRK00007	693	elongation factor G; Reviewed	98.32
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.31
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.31
COG0218	200	Predicted GTPase [General function prediction only	98.29
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.27
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.27
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.22
COG1163	365	DRG Predicted GTPase [General function prediction	98.2
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.19
PRK09602	396	translation-associated GTPase; Reviewed	98.18
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.16
COG1162	301	Predicted GTPases [General function prediction onl	98.13
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.06
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.05
PRK07560	731	elongation factor EF-2; Reviewed	98.04
PTZ00416	836	elongation factor 2; Provisional	98.04
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.03
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.01
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.0
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.96
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.92
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.92
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.89
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.86
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.85
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.84
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.82
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.68
COG3596	296	Predicted GTPase [General function prediction only	97.65
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.6
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.59
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.58
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.58
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.56
KOG3887	347	consensus Predicted small GTPase involved in nucle	97.51
cd03110	179	Fer4_NifH_child This protein family's function is	97.49
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.46
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.41
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.4
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.29
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.29
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.26
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.13
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.11
KOG0464	753	consensus Elongation factor G [Translation, riboso	96.99
PTZ00258	390	GTP-binding protein; Provisional	96.96
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.88
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.83
KOG1143	591	consensus Predicted translation elongation factor	96.69
KOG0460	449	consensus Mitochondrial translation elongation fac	96.65
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.64
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.63
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.48
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.43
COG1161	322	Predicted GTPases [General function prediction onl	96.39
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.35
KOG4273	418	consensus Uncharacterized conserved protein [Funct	96.28
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.19
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	95.99
KOG0410	410	consensus Predicted GTP binding protein [General f	95.96
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	95.94
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.8
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	95.76
PHA02518	211	ParA-like protein; Provisional	95.74
KOG2484	435	consensus GTPase [General function prediction only	95.69
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	95.54
PRK14974	336	cell division protein FtsY; Provisional	95.5
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.42
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	95.39
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	95.31
PRK10416	318	signal recognition particle-docking protein FtsY;	95.29
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	95.19
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	95.1
PRK09601	364	GTP-binding protein YchF; Reviewed	95.03
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	94.83
cd02036	179	MinD Bacterial cell division requires the formatio	94.52
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	94.19
cd03111	106	CpaE_like This protein family consists of proteins	93.89
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	93.79
TIGR00959	428	ffh signal recognition particle protein. This mode	93.75
KOG2423	572	consensus Nucleolar GTPase [General function predi	93.65
cd03112	158	CobW_like The function of this protein family is u	93.6
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	93.6
COG1149	284	MinD superfamily P-loop ATPase containing an inser	93.19
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	92.88
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	92.68
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	92.38
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	92.38
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	92.23
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	92.21
PRK00771	437	signal recognition particle protein Srp54; Provisi	91.94
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	91.87
KOG2486	320	consensus Predicted GTPase [General function predi	91.77
cd02117	212	NifH_like This family contains the NifH (iron prot	91.73
PRK10867	433	signal recognition particle protein; Provisional	91.45
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	91.16
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	90.91
COG3523	1188	IcmF Type VI protein secretion system component Va	90.67
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	90.55
KOG0780	483	consensus Signal recognition particle, subunit Srp	90.54
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	90.32
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	90.28
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	90.21
CHL00175	281	minD septum-site determining protein; Validated	90.14
cd03114	148	ArgK-like The function of this protein family is u	89.91
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	89.79
COG0523	323	Putative GTPases (G3E family) [General function pr	89.49
PRK13849	231	putative crown gall tumor protein VirC1; Provision	88.81
cd03115	173	SRP The signal recognition particle (SRP) mediates	88.66
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	87.97
cd02032	267	Bchl_like This family of proteins contains bchL an	87.72
PRK10818	270	cell division inhibitor MinD; Provisional	86.77
COG5019	373	CDC3 Septin family protein [Cell division and chro	86.64
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	86.16
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	85.98
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	85.91
PRK11537	318	putative GTP-binding protein YjiA; Provisional	85.74
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	85.26
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	84.84
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	84.53
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	84.12
cd02040	270	NifH NifH gene encodes component II (iron protein)	83.91
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	83.69
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	83.65
CHL00072	290	chlL photochlorophyllide reductase subunit L	83.62
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	83.54
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	82.85
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	82.4
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	81.52
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	81.11
PRK11670	369	antiporter inner membrane protein; Provisional	81.08
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	80.97
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	80.38

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-33  Score=194.12  Aligned_cols=127  Identities=49%  Similarity=0.823  Sum_probs=120.1

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.++|+.++|++|||+|+++|+.+...||++|+|||+|||+++..||+.+..|+.++.++...++|.++||||+|+.+.+
T Consensus        51 ~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~  130 (205)
T KOG0084|consen   51 VELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR  130 (205)
T ss_pred             eeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe
Confidence            35799999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             cCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           81 AVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      .++.++++.++..++++ ++++||+++.|++++|..+...+.......
T Consensus       131 ~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~  178 (205)
T KOG0084|consen  131 VVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLH  178 (205)
T ss_pred             ecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccC
Confidence            99999999999999998 999999999999999999999887765544

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1e-31  Score=187.06  Aligned_cols=126  Identities=44%  Similarity=0.732  Sum_probs=117.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .++...++|.+|||+|+++|+++.++||+++++.|+|||+++.+||..++.|+.++.+..+.++-|.++|||+||.+.+.
T Consensus        48 ~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~  127 (200)
T KOG0092|consen   48 TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE  127 (200)
T ss_pred             EeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccc
Confidence            46777899999999999999999999999999999999999999999999999999988777788888999999998899


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      +..++++.+++..++.|+++||+++.|++++|..|.+.+.....+.
T Consensus       128 V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  128 VEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             ccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccc
Confidence            9999999999999999999999999999999999999987755443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.6e-31  Score=187.11  Aligned_cols=126  Identities=46%  Similarity=0.863  Sum_probs=119.7

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.++|..+.+++|||+|+++|+.+...||++|+++++|||+++..||+++..|+..+.++.+.++|+++||||+|+..++
T Consensus        54 i~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R  133 (207)
T KOG0078|consen   54 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR  133 (207)
T ss_pred             EEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      +++.+.++.++.++|+.++|+||++|.||++.|-.|.+.+..+...
T Consensus       134 ~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  134 QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            9999999999999999999999999999999999999999875443

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=180.13  Aligned_cols=126  Identities=52%  Similarity=0.920  Sum_probs=120.3

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +++++++++|++|||+|++.+.+..+.||+++-+.|+|||+++.++|+.+..|+..+++....+..++++|||+||...+
T Consensus        48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR  127 (216)
T KOG0098|consen   48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR  127 (216)
T ss_pred             EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence            46899999999999999999999999999999999999999999999999999999999977789999999999999999


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      .++.++++.+++++|+.++++||++++|++|+|......++.....
T Consensus       128 ~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  128 EVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             cccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999887654

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=6.3e-30  Score=185.01  Aligned_cols=158  Identities=35%  Similarity=0.627  Sum_probs=132.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++|||+|+++|..++..+++++|++|+|||+++++||+++..|+..+......+.|+++||||+|+...++
T Consensus        43 ~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~  122 (202)
T cd04120          43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE  122 (202)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence            46788899999999999999999999999999999999999999999999999988776555799999999999987788


Q ss_pred             CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHH-HhHhHHHHhhhccccCCCCCCceeecCCCCCCcccC
Q 031238           82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYHI-ISKKALAAQQASANTALPGQGTTINVNDASPSVKKG  159 (163)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (163)
                      +..++++++++.. ++.++++||++|.|++++|+++++.+... ........-..+..+.++.+.-+-+.|++.+|.  .
T Consensus       123 v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  200 (202)
T cd04120         123 ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHV--R  200 (202)
T ss_pred             cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCc--c
Confidence            8888898898875 78999999999999999999999887654 223333344555566666677777788877664  3


Q ss_pred             cc
Q 031238          160 CC  161 (163)
Q Consensus       160 ~c  161 (163)
                      ||
T Consensus       201 ~~  202 (202)
T cd04120         201 CC  202 (202)
T ss_pred             cC
Confidence            55

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.4e-30  Score=180.07  Aligned_cols=132  Identities=81%  Similarity=1.188  Sum_probs=124.1

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.++++.++.+||||+|+++|+.+...||+++.+.++|||++...+|+.+..|+.+++.....++++++||||+||...+
T Consensus        56 ~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr  135 (222)
T KOG0087|consen   56 VNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR  135 (222)
T ss_pred             eeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc
Confidence            46799999999999999999999999999999999999999999999999999999999988899999999999998889


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHh
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQ  132 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  132 (163)
                      .+..++++.+++..++.++++||.++.|++++|+.++..++....++.....
T Consensus       136 aV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~~~~  187 (222)
T KOG0087|consen  136 AVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKKQLDEN  187 (222)
T ss_pred             ccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999998877754443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.2e-30  Score=178.86  Aligned_cols=124  Identities=38%  Similarity=0.698  Sum_probs=115.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC-CCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK~Dl~~~~   80 (163)
                      .+.+..+.|++|||+|+++|+.+...|++++.++|+|||+++..||+...+|++.++...+. ++-|++||||.||.+++
T Consensus        65 ~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr  144 (221)
T KOG0094|consen   65 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR  144 (221)
T ss_pred             EEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence            46788999999999999999999999999999999999999999999999999999998874 58889999999999999


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +++.++++..+++++..|+++||+.|.||+++|..|...+..+..
T Consensus       145 qvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  145 QVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             hhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            999999999999999999999999999999999998877766544

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=4.1e-30  Score=174.05  Aligned_cols=126  Identities=40%  Similarity=0.688  Sum_probs=116.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++....|.+|||+|+++|..+...||++++++++|||++|.+||+.++.|..+++...+..+-+++||||+||++.+.
T Consensus        56 n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~  135 (218)
T KOG0088|consen   56 NVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ  135 (218)
T ss_pred             ccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh
Confidence            45677889999999999999999999999999999999999999999999999999998887789999999999999999


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      ++..+.+.+++.-|..|+++||+++.||.++|+.+....++....+
T Consensus       136 Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~  181 (218)
T KOG0088|consen  136 VTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR  181 (218)
T ss_pred             hhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999988877654433

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=6e-29  Score=181.82  Aligned_cols=162  Identities=90%  Similarity=1.255  Sum_probs=129.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.++||||+|++++..++..++++++++|+|||++++.+|+.+..|+..+......+.|+++|+||+|+...+.
T Consensus        55 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~  134 (216)
T PLN03110         55 QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRS  134 (216)
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccC
Confidence            45788899999999999999999999999999999999999999999999999998877656799999999999977778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC  161 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  161 (163)
                      +..+++..++...+++++++||+++.|++++|++++..+......+...+.....+..+++...+.........+++|||
T Consensus       135 ~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (216)
T PLN03110        135 VAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCC  214 (216)
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCc
Confidence            88888998998889999999999999999999999999988655444333322221122222222222233455667899


Q ss_pred             CC
Q 031238          162 ST  163 (163)
Q Consensus       162 ~~  163 (163)
                      ++
T Consensus       215 ~~  216 (216)
T PLN03110        215 ST  216 (216)
T ss_pred             CC
Confidence            85

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2e-29  Score=168.83  Aligned_cols=123  Identities=45%  Similarity=0.775  Sum_probs=117.4

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      |.++|..++|++|||+|+++|+.+...+|++.+++++|||+++.+||.+...|+.++...++ .+|=++||||.|..+.+
T Consensus        50 v~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~Rr  128 (198)
T KOG0079|consen   50 VDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERR  128 (198)
T ss_pred             eecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccce
Confidence            45789999999999999999999999999999999999999999999999999999998877 68899999999999989


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+..++.+.++...|+.+|++||+.++|++..|.-|.+++.+.+
T Consensus       129 vV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  129 VVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             eeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998876

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=169.26  Aligned_cols=126  Identities=37%  Similarity=0.659  Sum_probs=115.1

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCC
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDL   76 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl   76 (163)
                      +.+|++.+.+++|||+|+++|.++.-.+|+++|..++|||++++.||+.+..|..++.....    ..+|+||+|||.|+
T Consensus        51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~  130 (210)
T KOG0394|consen   51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV  130 (210)
T ss_pred             EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence            35789999999999999999999999999999999999999999999999999999987654    46999999999999


Q ss_pred             cc--cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           77 NH--LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      .+  .++++.+.++.+|...| ++||++||+.+.|++++|+.+.+..+.....
T Consensus       131 ~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  131 DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             CCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence            65  28899999999998875 7999999999999999999999999887654

>cd04121 Rab40 Rab40 subfamily

Probab=99.96  E-value=4e-28  Score=174.00  Aligned_cols=120  Identities=38%  Similarity=0.730  Sum_probs=111.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|+++..|+..+....+ ++|+|+||||.|+...+.
T Consensus        49 ~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~~~~  127 (189)
T cd04121          49 LLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAFKRQ  127 (189)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchhccC
Confidence            4678889999999999999999999999999999999999999999999999999977654 799999999999987788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ++.++++.+++..+++++++||++|.|++++|+++.+.+..
T Consensus       128 v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         128 VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=4.5e-29  Score=169.27  Aligned_cols=124  Identities=44%  Similarity=0.711  Sum_probs=115.7

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      |.++|+.+++-+|||+|+++|+.+...||+++.++|+|||++.+++|..+..|+.++.-+.. .++-.++||||+|....
T Consensus        53 m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~  132 (209)
T KOG0080|consen   53 MQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE  132 (209)
T ss_pred             EEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc
Confidence            46799999999999999999999999999999999999999999999999999999988876 56777899999998778


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +.++.+++..+++++++-++++||++.+|++..|+.+++.+++..
T Consensus       133 R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  133 RVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999887654

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-28  Score=163.39  Aligned_cols=121  Identities=44%  Similarity=0.802  Sum_probs=114.7

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      .+.+.+++|||+|+++|+.+...+|++++++|++||+++.+||..+..|.-.|..++-.+.|+|+|+||+||...+.++.
T Consensus        67 ~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~  146 (193)
T KOG0093|consen   67 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISH  146 (193)
T ss_pred             ccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeH
Confidence            45689999999999999999999999999999999999999999999999999988878899999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +.++.++.+.|+.+|++||+.+.|++.+|+.++..+.+...
T Consensus       147 e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  147 ERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998877543

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=1.8e-27  Score=175.25  Aligned_cols=124  Identities=27%  Similarity=0.485  Sum_probs=110.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.++||||+|++.|..++..+++++|++|+|||++++.+|+.+ ..|+..+....+ +.|+++||||.|+..  
T Consensus        55 ~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~  133 (232)
T cd04174          55 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDL  133 (232)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccccc
Confidence            4688899999999999999999999999999999999999999999985 799999987665 689999999999854  


Q ss_pred             ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCC-CHHHHHHHHHHHHHHHHhH
Q 031238           79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEAT-NVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~~~~~l~~~~~~~~~~  126 (163)
                                .+.++.++++++++.+++ .|+++||++|+ |++++|+.++..+++...+
T Consensus       134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         134 STLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             chhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence                      256889999999999998 69999999998 8999999999988765433

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=3.9e-27  Score=172.38  Aligned_cols=123  Identities=30%  Similarity=0.507  Sum_probs=108.7

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-------
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-------   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-------   78 (163)
                      ..+.+.||||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+......+.|+|+||||+|+.+       
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~  121 (220)
T cd04126          42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQ  121 (220)
T ss_pred             eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccc
Confidence            4678999999999999999999999999999999999999999999888888765445789999999999865       


Q ss_pred             ------------cccCCHHHHHHHHHHcC--------------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238           79 ------------LRAVTEEDGHSLAEKEG--------------LSFLETSALEATNVEKAFQTILTEIYHIISKKA  128 (163)
Q Consensus        79 ------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  128 (163)
                                  .+.+..++++.+++..+              ++|+++||++|.|++++|..++..++....++.
T Consensus       122 ~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~  197 (220)
T cd04126         122 EKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR  197 (220)
T ss_pred             cccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence                        57788899999998876              679999999999999999999998887665553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=2e-27  Score=161.69  Aligned_cols=127  Identities=45%  Similarity=0.807  Sum_probs=115.7

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCccccc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~   81 (163)
                      .|..++|+||||+|+++++++...||+++-++++|||+++.+||+.+..|+.+......  ..+.+++||+|+||...++
T Consensus        54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq  133 (213)
T KOG0091|consen   54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ  133 (213)
T ss_pred             CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc
Confidence            57889999999999999999999999999999999999999999999999999877655  3445678999999999999


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALA  130 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~  130 (163)
                      ++.++++.+++.+|..++++||++|.|+++.|..+.+.+.....+.++.
T Consensus       134 Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik  182 (213)
T KOG0091|consen  134 VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIK  182 (213)
T ss_pred             ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCcee
Confidence            9999999999999999999999999999999999999888877664433

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=7.8e-27  Score=166.98  Aligned_cols=145  Identities=37%  Similarity=0.631  Sum_probs=123.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++.+..++..+++++|++|+|||++++.+|+.+..|+..+........|+++++||.|+.+.+.
T Consensus        43 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~  122 (188)
T cd04125          43 YIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV  122 (188)
T ss_pred             EECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCccccc
Confidence            45677889999999999999999999999999999999999999999999999999877655689999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC  161 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  161 (163)
                      +..+....+++..+++++++||+++.|++++|+++++.+........           .    .+  +..+.+.+++.+|
T Consensus       123 v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~-----------~----~~--~~~~~~~~~~~~~  185 (188)
T cd04125         123 VDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQE-----------L----SP--KNIKQQFKKKNNC  185 (188)
T ss_pred             CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCc-----------C----Cc--cccccccccccCc
Confidence            88888888888888999999999999999999999998865432221           1    11  2346667888999


Q ss_pred             CC
Q 031238          162 ST  163 (163)
Q Consensus       162 ~~  163 (163)
                      +|
T Consensus       186 ~~  187 (188)
T cd04125         186 FI  187 (188)
T ss_pred             cc
Confidence            97

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.95  E-value=7.2e-27  Score=168.95  Aligned_cols=121  Identities=36%  Similarity=0.657  Sum_probs=108.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----CCCCeEEEEeeCCCCcccc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----DSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~~~   80 (163)
                      +..+.+.+|||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....    ..++|+++|+||.|+.+.+
T Consensus        47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~  126 (201)
T cd04107          47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL  126 (201)
T ss_pred             CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc
Confidence            678899999999999999999999999999999999999999999999998886532    2468999999999997667


Q ss_pred             cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           81 AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      .+..+++.++++..+ ..++++||++|.|++++|+++++.+.....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~  172 (201)
T cd04107         127 AKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDK  172 (201)
T ss_pred             ccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhch
Confidence            778889999999988 589999999999999999999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=1.2e-26  Score=164.71  Aligned_cols=121  Identities=37%  Similarity=0.700  Sum_probs=109.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .++++.+++.||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+......+.|+++||||+|+...+.
T Consensus        23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~  102 (176)
T PTZ00099         23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK  102 (176)
T ss_pred             EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence            46788999999999999999999999999999999999999999999999999998776545789999999999976677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+++..++..++..++++||++|.|++++|++|++.+..
T Consensus       103 v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        103 VTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            88888888888888899999999999999999999988754

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=9.6e-27  Score=166.92  Aligned_cols=122  Identities=38%  Similarity=0.619  Sum_probs=108.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~   78 (163)
                      .+++..+.++||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.....   .+.|+++||||+|+..
T Consensus        41 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          41 VVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            3577788999999999999999999999999999999999999999999999988876542   4689999999999977


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+.+...++..++...+++++++||++|.|++++|+++++.+...
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~  165 (190)
T cd04144         121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQ  165 (190)
T ss_pred             cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            777887788888888889999999999999999999999877543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.9e-27  Score=158.49  Aligned_cols=120  Identities=47%  Similarity=0.791  Sum_probs=109.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+++++|||+|+++|+++...++++|-+++++||+++..||.+++.|+.++....- .+..|++.|||.||++.++++
T Consensus        64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs  143 (219)
T KOG0081|consen   64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS  143 (219)
T ss_pred             ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence            4568999999999999999999999999999999999999999999999999876533 366799999999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .++..+++++.+++||++||-+|.|+++..+.++..++++.
T Consensus       144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888776654

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=7.9e-28  Score=158.83  Aligned_cols=125  Identities=47%  Similarity=0.774  Sum_probs=117.0

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.++++++++++|||+|+++|++....||+++|+++++||+.+..||++.+.|+.+|.++.+..+.++++|||+|+...+
T Consensus        40 i~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er  119 (192)
T KOG0083|consen   40 IDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER  119 (192)
T ss_pred             eccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh
Confidence            35789999999999999999999999999999999999999999999999999999999988788899999999997778


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      .+..++++.+++..+++++++||++|.|++..|-.|.+.+.+...
T Consensus       120 ~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~  164 (192)
T KOG0083|consen  120 AVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKM  164 (192)
T ss_pred             ccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhcc
Confidence            888899999999999999999999999999999999988876543

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2.3e-26  Score=165.07  Aligned_cols=148  Identities=43%  Similarity=0.701  Sum_probs=123.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.++||||+|++++..++..+++++|++|+|||++++++++++..|+..+......++|+++|+||.|+...+.
T Consensus        44 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~  123 (191)
T cd04112          44 TVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV  123 (191)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc
Confidence            45778889999999999999999999999999999999999999999999999999887655789999999999976677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCCCCCCceeecCCCCCCcccCcc
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC  161 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  161 (163)
                      +..++.+.++...+.+|+++||++|.|++++|+++.+.+......            .++..+-+.+.=++...+.++||
T Consensus       124 ~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         124 VKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE------------QPDEGKFKISDYVTKQKKISRCC  191 (191)
T ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc------------cCCCCcEEeccccCcccccCCCC
Confidence            777888888888889999999999999999999999888654311            12333334555556667778888

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=1.5e-26  Score=167.07  Aligned_cols=124  Identities=44%  Similarity=0.745  Sum_probs=110.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.|||++|++.+..++..++++++++|+|||++++++|+.+..|+..+..... ..|+++||||+|+...+.+
T Consensus        50 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~  128 (199)
T cd04110          50 INGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVV  128 (199)
T ss_pred             ECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccccccc
Confidence            467788999999999999999999999999999999999999999999999999877654 6899999999999776777


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      ..++...+++..+.+++++||++|.|++++|+++...++.....+
T Consensus       129 ~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110         129 ETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDN  173 (199)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence            778888888888899999999999999999999999887654333

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.95  E-value=1.4e-26  Score=165.09  Aligned_cols=119  Identities=26%  Similarity=0.546  Sum_probs=107.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+....+ +.|+++||||.|+.+  
T Consensus        47 ~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~  125 (182)
T cd04172          47 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDL  125 (182)
T ss_pred             EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcCh
Confidence            4688899999999999999999999999999999999999999999997 799999987765 689999999999853  


Q ss_pred             ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHH
Q 031238           79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIY  121 (163)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~  121 (163)
                                .+.++.++++++++.+++ +|+++||++|+| ++++|+.+++..+
T Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         126 TTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             hhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence                      246889999999999996 899999999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=2.3e-26  Score=168.44  Aligned_cols=123  Identities=25%  Similarity=0.475  Sum_probs=106.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.|.||||+|++.|..++..+|+++|++|+|||++++++|+.+. .|...+....+ +.|+++||||+|+.+. 
T Consensus        43 ~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~  121 (222)
T cd04173          43 EIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDL  121 (222)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccch
Confidence            56888999999999999999999999999999999999999999999984 67766655544 7999999999998542 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHHh
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIYHIIS  125 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~  125 (163)
                                 .+++.++++.+++..++ +|+++||+++++ ++++|+.++...+....
T Consensus       122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence                       24778899999999995 899999999985 99999999998766443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=1.5e-26  Score=164.20  Aligned_cols=118  Identities=34%  Similarity=0.633  Sum_probs=106.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+....+ +.|+++||||+|+.+.+
T Consensus        43 ~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~  121 (176)
T cd04133          43 SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDK  121 (176)
T ss_pred             EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccCh
Confidence            4688899999999999999999999999999999999999999999998 689999877654 79999999999996543


Q ss_pred             ----------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 ----------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                .+..++++.+++..+. .|+++||++|.||+++|+.+++.+
T Consensus       122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence                      4788899999999987 699999999999999999999865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04122 Rab14 Rab14 subfamily

Probab=99.94  E-value=7.9e-26  Score=158.58  Aligned_cols=121  Identities=50%  Similarity=0.861  Sum_probs=110.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++++...+..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||+|+...+.
T Consensus        45 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~  124 (166)
T cd04122          45 EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD  124 (166)
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence            45778899999999999999999999999999999999999999999999999988776555789999999999987788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+++..+++..+++++++||++|.|++++|..+++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         125 VTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             cCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            88889999999889999999999999999999999987753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=4.4e-26  Score=163.71  Aligned_cols=119  Identities=30%  Similarity=0.589  Sum_probs=105.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+. .|...+....+ +.|+++||||.||.+. 
T Consensus        45 ~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~  123 (191)
T cd01875          45 AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDA  123 (191)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcCh
Confidence            46888899999999999999999999999999999999999999999996 68887766544 6999999999999643 


Q ss_pred             -----------ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+..++++.+++.++ .+|+++||++|.|++++|+++++.+.
T Consensus       124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence                       2366788899999888 58999999999999999999997764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.94  E-value=7.5e-26  Score=159.99  Aligned_cols=121  Identities=30%  Similarity=0.498  Sum_probs=109.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.++||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        44 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~  123 (172)
T cd04141          44 RIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR  123 (172)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC
Confidence            4678889999999999999999999999999999999999999999999988887766533 479999999999997778


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .++.++++.+++.++++++++||++|.|++++|+++++.+..
T Consensus       124 ~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         124 QVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             ccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            888889999999899999999999999999999999987765

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-26  Score=156.05  Aligned_cols=122  Identities=44%  Similarity=0.748  Sum_probs=112.3

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.++|+++++++|||+|+++|+++...||+.++++|+|||++..++|+-+..|+.++..+.+..+--|+||||.|+.+.+
T Consensus        49 vev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr  128 (213)
T KOG0095|consen   49 VEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR  128 (213)
T ss_pred             EEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence            46799999999999999999999999999999999999999999999999999999999988777779999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +++...++++.+.....++++||++..|++.+|..+.-.+..
T Consensus       129 evp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  129 EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence            998888999998877789999999999999999988865544

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.3e-26  Score=152.95  Aligned_cols=135  Identities=49%  Similarity=0.764  Sum_probs=124.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .++++.++|++|||+|+++|++..+.||+++-+.++|||+++.++|+++-.|+..++...+.++-++++|||.||..+++
T Consensus        52 nVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~  131 (214)
T KOG0086|consen   52 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPERE  131 (214)
T ss_pred             eecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence            46789999999999999999999999999999999999999999999999999999988887889999999999999999


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASA  136 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~  136 (163)
                      ++..+...++.+..+-++++||.+|+|++|.|-...+.++.++...++-+++...
T Consensus       132 VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~gs  186 (214)
T KOG0086|consen  132 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMGS  186 (214)
T ss_pred             hhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHccc
Confidence            9999999999999999999999999999999999999998887766665555433

>cd04131 Rnd Rnd subfamily

Probab=99.94  E-value=6.4e-26  Score=161.23  Aligned_cols=119  Identities=25%  Similarity=0.530  Sum_probs=106.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.+++|||+|++.|..++..+++++|++|+|||+++++||+.+ ..|+..+....+ +.|+++||||.||.+  
T Consensus        43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~  121 (178)
T cd04131          43 EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDL  121 (178)
T ss_pred             EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcCh
Confidence            4688899999999999999999999999999999999999999999996 799999987765 689999999999853  


Q ss_pred             ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHH
Q 031238           79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIY  121 (163)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~  121 (163)
                                .+.+..++++++++.+++ .|+++||++|+| ++++|..+++..+
T Consensus       122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence                      245888999999999997 899999999995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.9e-25  Score=149.03  Aligned_cols=126  Identities=50%  Similarity=0.836  Sum_probs=117.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+.|.++++++|||+|+++|+...+.||+++-+.++|||++....++.+..|+...+...+.+-.++++|||.||+..++
T Consensus        54 evsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd  133 (215)
T KOG0097|consen   54 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD  133 (215)
T ss_pred             EecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence            56789999999999999999999999999999999999999999999999999998888776778899999999999999


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      +..++.++++++.|+-++++||++|.|+++.|-....++++.....
T Consensus       134 v~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdg  179 (215)
T KOG0097|consen  134 VTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG  179 (215)
T ss_pred             CcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999999999988888888776543

>PTZ00369 Ras-like protein; Provisional

Probab=99.94  E-value=3.3e-25  Score=158.85  Aligned_cols=123  Identities=36%  Similarity=0.610  Sum_probs=110.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+
T Consensus        47 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~  126 (189)
T PTZ00369         47 VIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER  126 (189)
T ss_pred             EECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            4678889999999999999999999999999999999999999999999999998877643 478999999999997667


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+..+++..+++.++.+++++||+++.|++++|+++++.+....
T Consensus       127 ~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~  170 (189)
T PTZ00369        127 QVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL  170 (189)
T ss_pred             ccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            77777888888888889999999999999999999999886653

>cd04111 Rab39 Rab39 subfamily

Probab=99.94  E-value=5.9e-25  Score=160.19  Aligned_cols=121  Identities=48%  Similarity=0.837  Sum_probs=109.4

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      ++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+++..|+..+..... ...|+++|+||.|+.+.+.+
T Consensus        48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v  127 (211)
T cd04111          48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV  127 (211)
T ss_pred             CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence            46678999999999999999999999999999999999999999999999999877644 45788999999999877788


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ..+++..+++.+++.++++||+++.|++++|++|.+.+....
T Consensus       128 ~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         128 TREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999999999887664

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.94  E-value=3.3e-25  Score=161.91  Aligned_cols=118  Identities=30%  Similarity=0.521  Sum_probs=107.4

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcccccC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~   82 (163)
                      ..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+.....   .+.|+++|+||.|+...+.+
T Consensus        48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v  127 (215)
T cd04109          48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV  127 (215)
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence            578999999999999999999999999999999999999999999999999887643   35689999999999777788


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..++...+++..+++++++||++|+|++++|+++...+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         128 KDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            88889999998899999999999999999999999988765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.94  E-value=2.1e-25  Score=160.67  Aligned_cols=115  Identities=25%  Similarity=0.482  Sum_probs=101.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.++||||+|++.  .+...+++++|++|+|||++++.||+.+. .|+..+....+ +.|+++||||+||.+  
T Consensus        60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~  136 (195)
T cd01873          60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYAD  136 (195)
T ss_pred             eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence            4688899999999999975  34567899999999999999999999996 69888876654 689999999999853  


Q ss_pred             -----------------cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           79 -----------------LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        79 -----------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                                       .+.++.++++.+++.++++|+++||++|+|++++|+.+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                             36788999999999999999999999999999999998763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=8.6e-25  Score=152.43  Aligned_cols=120  Identities=35%  Similarity=0.730  Sum_probs=113.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++.+..++..+++++|++|+|||+++++||+.+..|+..+....+.+.|++|+|||.|+.+.+.
T Consensus        42 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~  121 (162)
T PF00071_consen   42 SIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE  121 (162)
T ss_dssp             EETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence            46789999999999999999999999999999999999999999999999999999988776699999999999987789


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ++.++++.+++.++++|+++||+++.|+.++|..+++.+.
T Consensus       122 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  122 VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=9.6e-25  Score=157.75  Aligned_cols=118  Identities=31%  Similarity=0.574  Sum_probs=104.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .++++.+.+.||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+... ++|+++||||+|+.. +.
T Consensus        38 ~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~  115 (200)
T smart00176       38 HTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD-RK  115 (200)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-cc
Confidence            3577889999999999999999999999999999999999999999999999999987754 799999999999854 44


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+. ..+++..++.|+++||++|.|++++|++++..+..
T Consensus       116 v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      116 VKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             CCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            55444 35777788999999999999999999999988855

Ran is involved in the active transport of proteins through nuclear pores.

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=1e-24  Score=152.49  Aligned_cols=118  Identities=39%  Similarity=0.754  Sum_probs=107.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++++..++..+++++|++++|||++++.+|+.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus        43 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~  122 (161)
T cd04117          43 EVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ  122 (161)
T ss_pred             EECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence            35677789999999999999999999999999999999999999999999999998876555799999999999987788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..+++..+++..+.+|+++||++|.|++++|.+|.+.
T Consensus       123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            88889999999889999999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=1.5e-24  Score=152.32  Aligned_cols=121  Identities=50%  Similarity=0.897  Sum_probs=109.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++.+..++..+++++|++|+|||++++++|+.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus        46 ~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~  125 (167)
T cd01867          46 ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV  125 (167)
T ss_pred             EECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence            45778889999999999999999999999999999999999999999999999999876555799999999999987677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+++..++..++.+++++||+++.|++++|+++.+.+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         126 VSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            77888888888888999999999999999999999988754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=1.6e-24  Score=153.72  Aligned_cols=118  Identities=46%  Similarity=0.804  Sum_probs=107.0

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+.+.||||+|++++..++..+++++|++|+|||++++++|..+..|+..+..... .+.|+++|+||+|+.+.+.+.
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~  139 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS  139 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence            4568899999999999999999999999999999999999999999999999876543 468999999999997777788


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+++..+++..+++++++||+++.|++++|+++++.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=6.7e-25  Score=155.54  Aligned_cols=118  Identities=25%  Similarity=0.496  Sum_probs=103.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+++|||+|++++..++..+++++|++|+|||++++++|+.+. .|+..+....+ ++|+++||||.|+... 
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~  121 (175)
T cd01874          43 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDP  121 (175)
T ss_pred             EECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhCh
Confidence            45788899999999999999999999999999999999999999999996 58888876544 6899999999998543 


Q ss_pred             -----------ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                 +.+..++++.+++..+ ..|+++||++|+|++++|+.++...
T Consensus       122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                       4677788888988887 6899999999999999999988743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.93  E-value=2e-24  Score=154.22  Aligned_cols=119  Identities=34%  Similarity=0.568  Sum_probs=103.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc----
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL----   79 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~----   79 (163)
                      +..+.+.+|||+|++++..++..+++++|++|+|||++++++|+++. .|+..+....+ +.|+++|+||.|+...    
T Consensus        46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~  124 (187)
T cd04132          46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCP-GTPIMLVGLKTDLRKDKNLD  124 (187)
T ss_pred             CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhhhCcccc
Confidence            67789999999999999999999999999999999999999999985 68877765543 6899999999998543    


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +.+..+++++++...++ +++++||++|.|++++|+.+++.+....
T Consensus       125 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         125 RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence            24667888889988888 8999999999999999999998887543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.93  E-value=1.9e-24  Score=151.37  Aligned_cols=120  Identities=51%  Similarity=0.848  Sum_probs=109.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++++..++..+++++|++|+|||++++++|.++..|+..+......+.|+++|+||.|+...+.
T Consensus        45 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~  124 (166)
T cd01869          45 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV  124 (166)
T ss_pred             EECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC
Confidence            35677889999999999999999999999999999999999999999999999998776545689999999999977777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..+++..++...+++++++||++|.|++++|+.+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         125 VDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            8888888899888999999999999999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04134 Rho3 Rho3 subfamily

Probab=99.93  E-value=1e-24  Score=156.28  Aligned_cols=119  Identities=29%  Similarity=0.549  Sum_probs=103.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+. .|+..+..... +.|+++|+||+|+...+
T Consensus        42 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~  120 (189)
T cd04134          42 FVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREAR  120 (189)
T ss_pred             EECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCh
Confidence            35778899999999999999999999999999999999999999999886 68888876554 78999999999986533


Q ss_pred             ------------cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 ------------AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                  .+..+++..+++..+ +.|+++||++|.|++++|+++.+.+.
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         121 NERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence                        345667778887776 68999999999999999999998775

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.93  E-value=2.3e-24  Score=151.03  Aligned_cols=120  Identities=44%  Similarity=0.776  Sum_probs=107.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .++..+.+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+.......+|+++|+||+|+.+.+.+
T Consensus        45 ~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~  124 (165)
T cd01865          45 RNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV  124 (165)
T ss_pred             ECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc
Confidence            35677899999999999999999999999999999999999999999999999987766557899999999999776777


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++..+++...+++++++||+++.|++++|+++...+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         125 SSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            7788888888888999999999999999999999887643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN03108 Rab family protein; Provisional

Probab=99.93  E-value=4.9e-24  Score=155.24  Aligned_cols=124  Identities=53%  Similarity=0.916  Sum_probs=111.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+........|+++|+||.|+...+.
T Consensus        49 ~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~  128 (210)
T PLN03108         49 TIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA  128 (210)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC
Confidence            45777889999999999999999999999999999999999999999999999888766555799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +..++++++++.++++++++||+++.|++++|+++++.+++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~  172 (210)
T PLN03108        129 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ  172 (210)
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            88899999999999999999999999999999999998876543

>cd04136 Rap_like Rap-like subfamily

Probab=99.93  E-value=1.4e-24  Score=151.27  Aligned_cols=119  Identities=34%  Similarity=0.586  Sum_probs=106.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.++||||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  122 (163)
T cd04136          43 EVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER  122 (163)
T ss_pred             EECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            4578888999999999999999999999999999999999999999999999998877543 478999999999997666


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..++...+++.++.+++++||+++.|++++|+++++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         123 VVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             eecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            7777778888888888999999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=99.93  E-value=1.9e-24  Score=151.12  Aligned_cols=119  Identities=34%  Similarity=0.577  Sum_probs=106.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...+
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  122 (164)
T cd04175          43 EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER  122 (164)
T ss_pred             EECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence            4577888999999999999999999999999999999999999999999999999876543 579999999999997767


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..+++..+++..+++++++||+++.|++++|+++++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         123 VVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             EEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            7777778888888889999999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04118 Rab24 Rab24 subfamily

Probab=99.93  E-value=5.2e-24  Score=152.81  Aligned_cols=123  Identities=34%  Similarity=0.599  Sum_probs=106.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL--   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~--   79 (163)
                      .+++..+.+.+||++|++++..++..+++++|++++|||++++.+++.+..|+..+..... +.|+++|+||.|+.+.  
T Consensus        44 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~  122 (193)
T cd04118          44 VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDR  122 (193)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEccccccccc
Confidence            4577888999999999999999999999999999999999999999999999998876543 6899999999998532  


Q ss_pred             --ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           80 --RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                        +.+..+++..++...+++++++||+++.|++++|+++.+.+.+...
T Consensus       123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118         123 SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence              3455567777888888899999999999999999999998876443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03118 Rab family protein; Provisional

Probab=99.93  E-value=9.8e-24  Score=153.65  Aligned_cols=122  Identities=45%  Similarity=0.748  Sum_probs=105.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH-HHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+.. |...+..... .+.|+++|+||+|+...
T Consensus        56 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         56 TVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            356778899999999999999999999999999999999999999999875 5555544332 46899999999999776


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+..++...++...++.|+++||+++.|++++|++|...+...
T Consensus       136 ~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        136 RDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             CccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            77777888888888889999999999999999999999988664

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=2.2e-24  Score=152.80  Aligned_cols=117  Identities=32%  Similarity=0.585  Sum_probs=103.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+++. .|+..+....+ ++|+++||||.|+.+. 
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~  121 (174)
T cd01871          43 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  121 (174)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccCh
Confidence            46788899999999999999999999999999999999999999999985 68887766544 7999999999998542 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                                 +.+..++++.+++..+. +++++||++|+|++++|+.++..
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence                       34778889999998884 89999999999999999998763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04128 Spg1 Spg1p

Probab=99.92  E-value=4.2e-24  Score=152.38  Aligned_cols=120  Identities=23%  Similarity=0.462  Sum_probs=102.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .+++..+.+++|||+|++.|..++..+++++|++++|||++++.+|+++..|+..+........| ++||||+|+..   
T Consensus        43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~  121 (182)
T cd04128          43 SIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP  121 (182)
T ss_pred             EECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccccc
Confidence            45788899999999999999999999999999999999999999999999999998876554567 57899999842   


Q ss_pred             --cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 --LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                        ......++++.+++.++.+++++||++|.|++++|+++++.+..
T Consensus       122 ~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         122 PEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             chhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence              11122456778888888999999999999999999999988865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01866 Rab2 Rab2 subfamily

Probab=99.92  E-value=1.2e-23  Score=147.86  Aligned_cols=121  Identities=55%  Similarity=0.939  Sum_probs=109.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|++++..++..+++++|++++|||++++++++.+..|+..+......+.|+++|+||.|+.+.+.
T Consensus        47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~  126 (168)
T cd01866          47 TIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE  126 (168)
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccC
Confidence            35777889999999999999999999999999999999999999999999999998776545799999999999976677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+++..++...++.++++||++++|++++|.++.+.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         127 VSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            78888888888889999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=8.5e-24  Score=147.68  Aligned_cols=120  Identities=37%  Similarity=0.707  Sum_probs=107.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-----CCCeEEEEeeCCCC
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-----SNIVIMMAGNKSDL   76 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~piivv~nK~Dl   76 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....     .+.|+++|+||+|+
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  122 (168)
T cd04119          43 SVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL  122 (168)
T ss_pred             EECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence            3467788999999999999999999999999999999999999999999999999987643     36899999999999


Q ss_pred             cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ...+.+..++.+.++...+++++++||+++.|++++|++|++.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         123 TKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            755667788888888888899999999999999999999998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01868 Rab11_like Rab11-like

Probab=99.92  E-value=1.3e-23  Score=146.98  Aligned_cols=119  Identities=78%  Similarity=1.190  Sum_probs=107.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++++..++..++++++++|+|||++++.+++.+..|+..+......++|+++|+||.|+...+.
T Consensus        46 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~  125 (165)
T cd01868          46 QIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA  125 (165)
T ss_pred             EECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence            35677789999999999999999999999999999999999999999999999998877665699999999999977777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..++...++...+++++++||++|.|++++|++++..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         126 VPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            778888888888889999999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04176 Rap2 Rap2 subgroup

Probab=99.92  E-value=6.1e-24  Score=148.34  Aligned_cols=119  Identities=30%  Similarity=0.515  Sum_probs=105.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.++||||+|++++..++..+++++|++|+|||++++.+|+++..|+..+..... .++|+++|+||+|+...+
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~  122 (163)
T cd04176          43 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER  122 (163)
T ss_pred             EECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence            4577888999999999999999999999999999999999999999999999988877643 579999999999997666


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+...+...+++..+.+++++||+++.|++++|.++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         123 EVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             ccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            6777777888887888999999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.92  E-value=5.6e-24  Score=150.03  Aligned_cols=119  Identities=33%  Similarity=0.576  Sum_probs=104.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++|+|||++++++|+.+. .|+..+....+ ++|+++|+||+|+... 
T Consensus        40 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~  118 (174)
T smart00174       40 EVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDK  118 (174)
T ss_pred             EECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhCh
Confidence            45788899999999999999999999999999999999999999999985 68888877654 7999999999998642 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+..++++.+++..+. .++++||+++.|++++|+.+++.++
T Consensus       119 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      119 STLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             hhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence                       23677888889999886 8999999999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.92  E-value=1.6e-23  Score=146.29  Aligned_cols=120  Identities=40%  Similarity=0.645  Sum_probs=106.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+
T Consensus        42 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~  121 (164)
T smart00173       42 EIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER  121 (164)
T ss_pred             EECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            3577889999999999999999999999999999999999999999999999888876543 468999999999997766


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..+.+..+++..+.+++++||+++.|++++|+++++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            67777888888888899999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.92  E-value=1.6e-23  Score=146.14  Aligned_cols=119  Identities=36%  Similarity=0.617  Sum_probs=106.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+...+
T Consensus        44 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~  123 (164)
T cd04145          44 EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR  123 (164)
T ss_pred             EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence            3677788999999999999999999999999999999999999999999999988876533 478999999999997766


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..+++..+++..+++++++||++|.|++++|+++++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         124 KVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             eecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            6777788888888889999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=2e-23  Score=146.19  Aligned_cols=118  Identities=53%  Similarity=0.856  Sum_probs=105.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.++
T Consensus        46 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~  125 (165)
T cd01864          46 EIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE  125 (165)
T ss_pred             EECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence            35677789999999999999999999999999999999999999999999999999876555799999999999977777


Q ss_pred             CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..+.+..+++..+. .++++||++|.|++++|+++.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         126 VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            788888889888876 68999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.2e-23  Score=154.15  Aligned_cols=117  Identities=32%  Similarity=0.564  Sum_probs=102.9

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+....+ ++|+++||||+|+.. +.+
T Consensus        57 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~-~~v  134 (219)
T PLN03071         57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQV  134 (219)
T ss_pred             ECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh-ccC
Confidence            456778999999999999999999999999999999999999999999999999987654 699999999999854 444


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+++ .+++..+++|+++||++|.|++++|++|++.+..
T Consensus       135 ~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        135 KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             CHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence            45555 6777778899999999999999999999988764

>cd04113 Rab4 Rab4 subfamily

Probab=99.92  E-value=2.2e-23  Score=145.24  Aligned_cols=118  Identities=54%  Similarity=0.848  Sum_probs=107.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++.+..++..+++++|++|+|||++++.++..+..|+..+......++|+++++||.|+...+.
T Consensus        43 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  122 (161)
T cd04113          43 RVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE  122 (161)
T ss_pred             EECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence            35677789999999999999999999999999999999999999999999999988766555799999999999977677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..++...+++..++.++++||+++.|++++|+++.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         123 VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            78888888999889999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.91  E-value=3.8e-23  Score=145.90  Aligned_cols=121  Identities=31%  Similarity=0.587  Sum_probs=104.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||+|+++|..++..+++++|++++|||++++++++.+..|+..+.+.. +...|+++|+||.|+.+.+
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~  122 (170)
T cd04108          43 EILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA  122 (170)
T ss_pred             EECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence            356778899999999999999999999999999999999999999999999999886543 3457899999999986543


Q ss_pred             c--CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 A--VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +  ...+++..+++..+.+++++||++|.|++++|+.++..+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3  34566777888888899999999999999999999887754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=2.4e-23  Score=145.03  Aligned_cols=114  Identities=32%  Similarity=0.609  Sum_probs=103.5

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +..+.+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+..... ++|+++|+||.|+...+.+..
T Consensus        48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~  126 (162)
T cd04106          48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITN  126 (162)
T ss_pred             CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCH
Confidence            5678899999999999999999999999999999999999999999999998876554 699999999999977677788


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +++..+++..+++++++||+++.|++++|++|...
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         127 EEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            88888999999999999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.91  E-value=4.9e-23  Score=143.50  Aligned_cols=121  Identities=61%  Similarity=0.989  Sum_probs=108.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|++.+...+..+++.+|++|+|||++++.+++.+..|+..+......++|+++|+||+|+....+
T Consensus        43 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~  122 (164)
T smart00175       43 EVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ  122 (164)
T ss_pred             EECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC
Confidence            35677789999999999999999999999999999999999999999999999998877655799999999999876667


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+.++.+++..+++++++||+++.|++++|+++.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      123 VSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            77888888888889999999999999999999999988743

Rab GTPases are implicated in vesicle trafficking.

>cd04140 ARHI_like ARHI subfamily

Probab=99.91  E-value=2.8e-23  Score=145.54  Aligned_cols=116  Identities=28%  Similarity=0.423  Sum_probs=102.7

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~   79 (163)
                      .++..+.+.+|||+|++++..++..+++++|++|+|||++++++++.+..|+..+.....   .+.|+++|+||+|+...
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~  123 (165)
T cd04140          44 CSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK  123 (165)
T ss_pred             ECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence            466778999999999999999999999999999999999999999999999887766432   46899999999999766


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +.+..+++..++..++++++++||++|.|++++|++|+.
T Consensus       124 ~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         124 REVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             CeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence            777777888888888889999999999999999999874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.91  E-value=7.6e-23  Score=142.06  Aligned_cols=118  Identities=36%  Similarity=0.652  Sum_probs=103.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++++|||+++..+++++..|+..+.+... .++|+++|+||+|+.. +
T Consensus        43 ~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~  121 (162)
T cd04138          43 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-R  121 (162)
T ss_pred             EECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-c
Confidence            3567778899999999999999999999999999999999999999999999988877643 4789999999999865 4


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..++...+++..+.+++++||++|.|++++|+++++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            5567778888888889999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.91  E-value=3.3e-23  Score=144.61  Aligned_cols=113  Identities=20%  Similarity=0.382  Sum_probs=98.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCc--c
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLN--H   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~--~   78 (163)
                      .+++..+.+.+|||+|++.     ..+++++|++++|||++++.||+++..|+..+..... .+.|+++||||.|+.  .
T Consensus        41 ~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  115 (158)
T cd04103          41 LVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN  115 (158)
T ss_pred             EECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence            5678889999999999975     3467899999999999999999999999999987754 468999999999984  3


Q ss_pred             cccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .+.+..++++++++.. ++.|++|||+++.||+++|+.+.+.
T Consensus       116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            4678888888898876 4899999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=6.1e-23  Score=144.24  Aligned_cols=117  Identities=32%  Similarity=0.602  Sum_probs=101.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .++..+.+.+|||+|++.+..++..++..+|++|+|||+++++++..+..|+..+..... ++|+++|+||+|+.+ +.+
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~  121 (166)
T cd00877          44 TNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKV  121 (166)
T ss_pred             ECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccC
Confidence            356778999999999999999999999999999999999999999999999999988765 799999999999963 333


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .. +...+++..+++++++||++|.|++++|++|++.+.+
T Consensus       122 ~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         122 KA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             CH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            33 3445666777899999999999999999999988754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=99.91  E-value=8.4e-23  Score=143.57  Aligned_cols=117  Identities=38%  Similarity=0.669  Sum_probs=103.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~   77 (163)
                      .+++..+.++|||++|++++..++..+++++|++|+|||++++++++.+..|...+.....    .++|+++|+||.|+.
T Consensus        48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          48 EVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            3678889999999999999999999999999999999999999999999999988866432    468999999999986


Q ss_pred             ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                       .+.+..++++++++.++. +++++||+++.|++++|+.+++.
T Consensus       128 -~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         128 -ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             -ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence             466778888899988874 89999999999999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.91  E-value=1.1e-22  Score=143.34  Aligned_cols=119  Identities=32%  Similarity=0.640  Sum_probs=106.0

Q ss_pred             eecCEEEEEEEEeCCChhhHh-hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|++++. .++..+++++|++++|||++++.++..+..|+..+..... .++|+++|+||+|+...
T Consensus        45 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          45 EIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ  124 (170)
T ss_pred             EECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence            457788999999999999886 5788899999999999999999999999999998877643 57999999999999877


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALE---ATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~~  120 (163)
                      +.+..++++.+++..+++|+++||++   +.+++++|..+++.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         125 IQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            78888888889988889999999999   889999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04124 RabL2 RabL2 subfamily

Probab=99.91  E-value=8.7e-23  Score=142.64  Aligned_cols=118  Identities=36%  Similarity=0.610  Sum_probs=101.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+....+ ++|+++|+||.|+...  
T Consensus        43 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~--  119 (161)
T cd04124          43 KFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS--  119 (161)
T ss_pred             EECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh--
Confidence            3577889999999999999999999999999999999999999999999999999876544 6899999999998421  


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                       ..++...+++..+++++++||++|.|++++|+.+++.+.++
T Consensus       120 -~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         120 -VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             -HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence             23445566777788999999999999999999999877653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01861 Rab6 Rab6 subfamily

Probab=99.90  E-value=1.4e-22  Score=140.99  Aligned_cols=117  Identities=43%  Similarity=0.770  Sum_probs=105.1

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+++||+||+..+..++..+++++|++|+|||++++++|+.+..|+..+....+.+.|+++++||.|+...+..
T Consensus        44 ~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~  123 (161)
T cd01861          44 LEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV  123 (161)
T ss_pred             ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc
Confidence            56677899999999999999999999999999999999999999999999999887665556999999999999666667


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ..++...+++..+++++++||+++.|++++|+++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         124 STEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            7888888888888999999999999999999999864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.90  E-value=1.5e-23  Score=148.80  Aligned_cols=122  Identities=34%  Similarity=0.635  Sum_probs=109.8

Q ss_pred             Cee-cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            1 MIV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         1 ~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      +.+ +|+.+.+.+|||+|+++|+.++...|.++|++++||++.++.||+++ ..|+.++....+ +.|+|+||+|.||.+
T Consensus        45 v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~  123 (198)
T KOG0393|consen   45 VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRD  123 (198)
T ss_pred             EEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhh
Confidence            356 49999999999999999999888899999999999999999999998 599999999987 799999999999953


Q ss_pred             ------------cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           79 ------------LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        79 ------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                                  ...+..+++..+++..| ..|++|||+++.|++++|+..+...+..
T Consensus       124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence                        24678899999999998 4899999999999999999999887653

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=1.9e-22  Score=140.77  Aligned_cols=115  Identities=31%  Similarity=0.591  Sum_probs=102.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +..+.+.+|||+|++.+..++..+++++|++++|||++++++++++..|+..+..... +.|+++|+||.|+.....+..
T Consensus        49 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~  127 (164)
T cd04101          49 DNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK-HMPGVLVGNKMDLADKAEVTD  127 (164)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccCCCH
Confidence            5678999999999999999999999999999999999999999999999998877653 689999999999977677777


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ...+.+....+++++++||+++.|++++|+.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         128 AQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            677777777788999999999999999999998765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=3.2e-22  Score=139.47  Aligned_cols=119  Identities=45%  Similarity=0.806  Sum_probs=107.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|++++...+..+++++|++|+|||++++++++....|+..+.......+|+++++||.|+...+.
T Consensus        44 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  123 (163)
T cd01860          44 NLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ  123 (163)
T ss_pred             EECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc
Confidence            46778899999999999999999999999999999999999999999999999998877655799999999999876666


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ...++...++...++.++++||++|.|++++|+++++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         124 VSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            777788888888889999999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.90  E-value=1.5e-22  Score=141.71  Aligned_cols=120  Identities=36%  Similarity=0.551  Sum_probs=103.3

Q ss_pred             eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcc
Q 031238            2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~   78 (163)
                      .++++.+.+++||++|+.. .......+++++|++|+|||++++.+|+.+..|+..+....  ..+.|+++|+||+|+..
T Consensus        41 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          41 TIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             EECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            4678889999999999985 34456778999999999999999999999999988887654  24699999999999977


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCC-CCHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEA-TNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~~~  121 (163)
                      .+.+..+++..+++..+.+|+++||+++ .|++++|+.+++.+.
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         121 YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            6777888888899888999999999999 599999999987653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.90  E-value=1.2e-22  Score=143.40  Aligned_cols=116  Identities=31%  Similarity=0.607  Sum_probs=101.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.+++|||+|++++..++..+++++|++|+|||++++.+|+.+. .|+..+..... +.|+++++||.|+..  
T Consensus        42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  120 (173)
T cd04130          42 LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDV  120 (173)
T ss_pred             EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccCh
Confidence            46777889999999999999999999999999999999999999999885 68888775433 689999999999853  


Q ss_pred             ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238           79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                                .+.+..+++..+++..+. .++++||++|.|++++|+.++.
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence                      356677888889998887 8999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=2.3e-22  Score=141.28  Aligned_cols=120  Identities=33%  Similarity=0.573  Sum_probs=106.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++|||+|+++|..+++.+++.++++++|||++++++++.+..|...+..... .+.|+++++||.|+...+
T Consensus        43 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~  122 (168)
T cd04177          43 EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR  122 (168)
T ss_pred             EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence            3567788999999999999999999999999999999999999999999999888876533 479999999999997767


Q ss_pred             cCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++...+++..+ ++++++||+++.|++++|++++.++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         123 QVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             ccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            777778888888877 78999999999999999999997664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.90  E-value=2.6e-22  Score=149.36  Aligned_cols=119  Identities=22%  Similarity=0.421  Sum_probs=103.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh---------cCCCCeEEEEee
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH---------ADSNIVIMMAGN   72 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~piivv~n   72 (163)
                      .+++..+.+.||||+|++.|..++..++.++|++|+|||++++++|+++..|+..+...         ...++|+|+|+|
T Consensus        42 ~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN  121 (247)
T cd04143          42 SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN  121 (247)
T ss_pred             EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence            46788899999999999999988888999999999999999999999999998888654         123689999999


Q ss_pred             CCCCcccccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           73 KSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        73 K~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      |+|+...+.+..+++.+++.. .++.++++||+++.|++++|++|+...
T Consensus       122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999976567777788777654 357899999999999999999999754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04123 Rab21 Rab21 subfamily

Probab=99.90  E-value=5.2e-22  Score=137.83  Aligned_cols=118  Identities=40%  Similarity=0.737  Sum_probs=106.1

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+||++|++.+..++..+++++|++++|||++++++++.+..|+..+......++|+++++||+|+...+.+
T Consensus        44 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~  123 (162)
T cd04123          44 IGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVV  123 (162)
T ss_pred             ECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC
Confidence            35677889999999999999999999999999999999999999999999999988776657999999999999876777


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+++..+++..+.+++++||+++.|++++|+++.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         124 SKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            77888888888889999999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.90  E-value=2.7e-22  Score=144.32  Aligned_cols=121  Identities=37%  Similarity=0.582  Sum_probs=112.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.++||+|++.+..+...+++++|++++||++++..||+.+..++..+.+... ..+|+++||||+|+...+
T Consensus        45 ~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R  124 (196)
T KOG0395|consen   45 TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER  124 (196)
T ss_pred             EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence            5789999999999999999999999999999999999999999999999999999966544 568999999999998889


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .++.++++.++..++++|+++||+.+.+++++|..|++.+..
T Consensus       125 ~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  125 QVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             ccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988765

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.90  E-value=3.9e-22  Score=143.92  Aligned_cols=139  Identities=24%  Similarity=0.307  Sum_probs=109.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcc-c
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNH-L   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~-~   79 (163)
                      .+++..+.++|||++|+..+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||.|+.. .
T Consensus        41 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~  120 (198)
T cd04147          41 EVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE  120 (198)
T ss_pred             EECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence            3567778999999999999999999999999999999999999999999999988877654 4699999999999864 3


Q ss_pred             ccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHHhhhccccCC
Q 031238           80 RAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAAQQASANTAL  140 (163)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  140 (163)
                      +.+..+...+... ..+..++++||++|.|++++|+++++.+.......+...++...++.+
T Consensus       121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  182 (198)
T cd04147         121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSPALRRRRESLPSE  182 (198)
T ss_pred             ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccchhhHHHHhhccHh
Confidence            4455544444433 445789999999999999999999998765444444444444444444

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04148 RGK RGK subfamily

Probab=99.89  E-value=3.8e-22  Score=146.36  Aligned_cols=123  Identities=26%  Similarity=0.330  Sum_probs=105.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhc-CCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYR-GAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|++  ......+++ ++|++++|||++++.+|+.+..|+..+..... .++|+|+|+||+|+...
T Consensus        44 ~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          44 SVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             EECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence            457788899999999998  334455667 99999999999999999999999998877643 47999999999999777


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      +.+..++++.++..++++++++||+++.|++++|++++..+......
T Consensus       122 ~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~  168 (221)
T cd04148         122 REVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS  168 (221)
T ss_pred             ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence            77777888888888889999999999999999999999988765444

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04142 RRP22 RRP22 subfamily

Probab=99.89  E-value=8.9e-22  Score=142.15  Aligned_cols=122  Identities=21%  Similarity=0.256  Sum_probs=99.8

Q ss_pred             eecCEEEEEEEEeCCChhhHh--------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc---CCCCeEEEE
Q 031238            2 IVEGKTVKAQIWDTAGQERYR--------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA---DSNIVIMMA   70 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv   70 (163)
                      .+++..+.+.||||+|...+.        ......++++|++|+|||++++.||+.+..|+..+....   ..++|+++|
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiiv  122 (198)
T cd04142          43 VLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVV  122 (198)
T ss_pred             EECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            467888999999999965431        123345789999999999999999999999998887754   347999999


Q ss_pred             eeCCCCcccccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           71 GNKSDLNHLRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        71 ~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +||+|+.+.+.+..++++.++. .++++|+++||++|.|++++|+.+++.+...
T Consensus       123 gNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         123 GNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTR  176 (198)
T ss_pred             EECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence            9999997666666777776654 5578999999999999999999999877654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04135 Tc10 TC10 subfamily

Probab=99.88  E-value=8.7e-22  Score=138.80  Aligned_cols=118  Identities=30%  Similarity=0.514  Sum_probs=102.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+. .|+..+... ..++|+++|+||+|+.+. 
T Consensus        42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~  120 (174)
T cd04135          42 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDP  120 (174)
T ss_pred             EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcCh
Confidence            45777888999999999999999999999999999999999999999885 687777665 347999999999998543 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                 +.+..++++.+++..+. +++++||++|.|++++|+.++..+
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         121 KTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence                       25667788888888886 799999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=8.2e-22  Score=140.44  Aligned_cols=117  Identities=18%  Similarity=0.312  Sum_probs=91.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      +...+.+++||++|++.++.++..+++++|++|+|||+++++++.++..++..+..... .+.|++|++||.|+.+.  .
T Consensus        57 ~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~  134 (181)
T PLN00223         57 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--M  134 (181)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--C
Confidence            44567899999999999999999999999999999999999999988877777654321 46899999999998643  2


Q ss_pred             CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++.........     +.++++||++|+|++++|++|.+.+..
T Consensus       135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            3333333222111     235689999999999999999888754

>cd04114 Rab30 Rab30 subfamily

Probab=99.88  E-value=2.6e-21  Score=135.65  Aligned_cols=119  Identities=40%  Similarity=0.739  Sum_probs=104.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|+..+...+..+++.+|++++|||++++.+++.+..|+..+......++|+++|+||.|+...++
T Consensus        50 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~  129 (169)
T cd04114          50 EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE  129 (169)
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence            35777889999999999999998899999999999999999999999999999888776655799999999999977677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..+..+.+.+.....++++||++|.|++++|+++.+.+
T Consensus       130 i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         130 VSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             cCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            777777777777778899999999999999999998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01863 Rab18 Rab18 subfamily

Probab=99.88  E-value=2.3e-21  Score=134.93  Aligned_cols=116  Identities=50%  Similarity=0.860  Sum_probs=103.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +++..+.+.+||++|++.+...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ..
T Consensus        44 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~  122 (161)
T cd01863          44 VDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-RE  122 (161)
T ss_pred             ECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cc
Confidence            567778999999999999999999999999999999999999999999899998877654 5799999999999863 45


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ...++...++...+++++++||++|.|++++|+.+++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         123 VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            56777888888889999999999999999999998865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=3.8e-21  Score=135.04  Aligned_cols=122  Identities=40%  Similarity=0.668  Sum_probs=105.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~   77 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++|++||++++.+++++..|...+.....    .++|+++|+||.|+.
T Consensus        43 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (172)
T cd01862          43 TVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE  122 (172)
T ss_pred             EECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence            4577788999999999999999999999999999999999999999988888877655432    368999999999997


Q ss_pred             ccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..+.+..++...+++..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         123 EKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             cccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            556667788888888887 6999999999999999999999887664

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=3.5e-21  Score=133.99  Aligned_cols=120  Identities=38%  Similarity=0.616  Sum_probs=105.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|+..+...+..+++.+|++++|||++++.++..+..|+..+..... .++|+++|+||+|+.+..
T Consensus        42 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  121 (164)
T cd04139          42 VLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR  121 (164)
T ss_pred             EECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence            3577889999999999999999999999999999999999999999999999888887643 479999999999997645


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .........++..++++++++||+++.|++++|+.+.+.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         122 QVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             ccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            55667777788888899999999999999999999988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=99.88  E-value=6.1e-22  Score=139.46  Aligned_cols=112  Identities=21%  Similarity=0.348  Sum_probs=91.7

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+.+++|||+|++++..++..+++++|++|+|||++++.+++++..|+..+.... ..++|+++|+||+|+.+  .+.
T Consensus        50 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~  127 (168)
T cd04149          50 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMK  127 (168)
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCC
Confidence            445789999999999999999999999999999999999999999988887776532 24689999999999853  245


Q ss_pred             HHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           84 EEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        84 ~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      .++++.+...     ....++++||++|.|++++|++|.+
T Consensus       128 ~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         128 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            5666655422     1246899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04129 Rho2 Rho2 subfamily

Probab=99.88  E-value=2.8e-21  Score=138.25  Aligned_cols=120  Identities=30%  Similarity=0.557  Sum_probs=101.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.+.+||++|++.+......+++++|+++++||+++.++|+++. .|+..+....+ +.|+++||||.|+..  
T Consensus        43 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~  121 (187)
T cd04129          43 RVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDA  121 (187)
T ss_pred             EECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCc
Confidence            35677788999999999988877777889999999999999999999986 68888876655 699999999999853  


Q ss_pred             --------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 --------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 --------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                              .+.+..+.++.+++..+. +|+++||++|.|++++|+++.+.++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         122 VAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             ccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence                    234556777888888885 89999999999999999999987644

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=99.87  E-value=1.9e-21  Score=136.97  Aligned_cols=117  Identities=19%  Similarity=0.305  Sum_probs=96.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      +...+.+.+|||+|++.+...+..+++++|++++|||++++++++++..|+..+..... .+.|+++|+||+|+.+  .+
T Consensus        39 ~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~  116 (169)
T cd04158          39 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--AL  116 (169)
T ss_pred             EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CC
Confidence            44567899999999999999999999999999999999999999999999888875432 4589999999999853  35


Q ss_pred             CHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEG------LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++++.++...+      +.++++||++|.|++++|++|.+.+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         117 SVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             CHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            6666766654322      257899999999999999999877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.87  E-value=4.1e-22  Score=139.82  Aligned_cols=115  Identities=18%  Similarity=0.293  Sum_probs=94.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+||++|++.+..++..+++++|++|+|||++++.++..++.|+..+.... .++|+++|+||.|+...+.+
T Consensus        39 i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~  117 (164)
T cd04162          39 IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSV  117 (164)
T ss_pred             EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCH
Confidence            45667889999999999999999999999999999999999999999998888886544 47999999999998654433


Q ss_pred             CH----HHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHH
Q 031238           83 TE----EDGHSLAEKEGLSFLETSALE------ATNVEKAFQTILT  118 (163)
Q Consensus        83 ~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~  118 (163)
                      ..    ..+..++++.++.++++||++      ++|++++|+.++.
T Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         118 QEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            21    123445566677889999888      9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00876 Ras Ras family

Probab=99.87  E-value=9.3e-21  Score=131.25  Aligned_cols=118  Identities=37%  Similarity=0.658  Sum_probs=105.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++||++|+..+...+..+++++|++++|||++++++++++..|+..+..... .+.|+++|+||+|+...+
T Consensus        41 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  120 (160)
T cd00876          41 VVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER  120 (160)
T ss_pred             EECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence            3466788999999999999999999999999999999999999999999999988887765 579999999999997666


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .+..+.+..++...+.+++++||+++.|++++|++|++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            677788888888888899999999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=8.1e-22  Score=139.68  Aligned_cols=114  Identities=19%  Similarity=0.331  Sum_probs=90.0

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ...+.+++|||+|++.+..++..+++++|++|+|||++++.++++...|+..+..... .++|++||+||.|+.+..  .
T Consensus        54 ~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~  131 (175)
T smart00177       54 YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--K  131 (175)
T ss_pred             ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--C
Confidence            3457899999999999999999999999999999999999999999888887764322 468999999999986422  2


Q ss_pred             HHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+++.+...     ...+.++++||++|.|++++|++|.+.+
T Consensus       132 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      132 AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            333332221     1123477899999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01892 Miro2 Miro2 subfamily

Probab=99.87  E-value=2.8e-21  Score=136.21  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=99.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+...  .++|+++|+||+|+.+.+.
T Consensus        48 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~  125 (169)
T cd01892          48 EVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQ  125 (169)
T ss_pred             EECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccccc
Confidence            45777889999999999999989999999999999999999999999988888766432  3689999999999965554


Q ss_pred             CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +...+.+.+++..++ .++++||+++.|++++|+.+.+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         126 RYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             ccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            444456677777777 4799999999999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.87  E-value=7.4e-22  Score=137.79  Aligned_cols=112  Identities=17%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ...+.+.+||++|++++..++..+++++|++|+|||++++.+++++..|+..+..... ...|+++++||.|+.+.  ..
T Consensus        41 ~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~  118 (159)
T cd04150          41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MS  118 (159)
T ss_pred             ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CC
Confidence            3457899999999999999999999999999999999999999999888877754322 35899999999998542  22


Q ss_pred             HHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           84 EEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        84 ~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      .+++.....     ..++.++++||++|.|++++|++|.+
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            333222221     11335789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.87  E-value=9.8e-21  Score=133.54  Aligned_cols=118  Identities=31%  Similarity=0.569  Sum_probs=98.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++.+..++..++.++|++++|||++++++|+.+. .|...+..... ++|+++|+||.|+... 
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  121 (175)
T cd01870          43 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDE  121 (175)
T ss_pred             EECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccCh
Confidence            45778889999999999999988888999999999999999999998885 68877766543 6899999999998532 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                 ..+...+++.++...+. +++++||++|.|++++|+++.+.+
T Consensus       122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence                       23445677777777764 899999999999999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00154 Rab Rab family

Probab=99.87  E-value=1.4e-20  Score=129.67  Aligned_cols=115  Identities=55%  Similarity=0.936  Sum_probs=103.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+||++|+..+...+..+++++|++|+|||++++++++.+..|+..+......+.|+++++||+|+......
T Consensus        44 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  123 (159)
T cd00154          44 IDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV  123 (159)
T ss_pred             ECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc
Confidence            45677899999999999999999999999999999999999999999999999998876457999999999999655667


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      ..+++..++...+.+++++||+++.|++++|+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         124 STEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            78888888888889999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.86  E-value=2.2e-20  Score=133.24  Aligned_cols=117  Identities=18%  Similarity=0.331  Sum_probs=94.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+  .+.
T Consensus        49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~  126 (183)
T cd04152          49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALS  126 (183)
T ss_pred             CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCC
Confidence            4568899999999999999999999999999999999999999888888887766533 4689999999999853  233


Q ss_pred             HHHHHHHHHH--c----CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEK--E----GLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        84 ~~~~~~~~~~--~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+++..+...  .    +++++++||++++|++++|++|++.+...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~  172 (183)
T cd04152         127 VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR  172 (183)
T ss_pred             HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence            4444444321  1    24588999999999999999999888643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.86  E-value=4.2e-20  Score=131.00  Aligned_cols=121  Identities=39%  Similarity=0.594  Sum_probs=105.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++||++|++++..++..++..++++++|||+++..+++.+..|+..+.+... .+.|+++++||+|+...+
T Consensus        43 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~  122 (180)
T cd04137          43 RYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR  122 (180)
T ss_pred             EECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence            3466678899999999999999999999999999999999999999999998888877543 468999999999997656


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..++...+++..+.+++++||+++.|+.++|+++.+.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         123 QVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            666667777788778899999999999999999999987754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=1.8e-20  Score=133.58  Aligned_cols=117  Identities=21%  Similarity=0.325  Sum_probs=90.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +...+.+.+|||+|++.++.++..+++++|++|+|||+++++++++...++..+.... ..++|+++|+||.|+.+  .+
T Consensus        57 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~  134 (182)
T PTZ00133         57 EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AM  134 (182)
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CC
Confidence            3456789999999999999999999999999999999999999998887777765432 13689999999999854  22


Q ss_pred             CHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+++......     ..+.++++||++|.|++++|++|.+.+..
T Consensus       135 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        135 STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence            33333222211     12346789999999999999999887654

>cd01893 Miro1 Miro1 subfamily

Probab=99.85  E-value=5.9e-20  Score=128.83  Aligned_cols=118  Identities=27%  Similarity=0.355  Sum_probs=94.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      +++..+.+.+|||+|+..+...+..+++.+|++++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+...
T Consensus        42 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~  120 (166)
T cd01893          42 VTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSS  120 (166)
T ss_pred             ecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccc
Confidence            4567789999999999988877788899999999999999999999975 67777766544 799999999999965443


Q ss_pred             CC--HHHHHHHHHHc-CC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VT--EEDGHSLAEKE-GL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~--~~~~~~~~~~~-~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ..  .+++..+.... ++ .++++||+++.|++++|+.+...+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~  164 (166)
T cd01893         121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL  164 (166)
T ss_pred             hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence            21  23333343333 33 7999999999999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.84  E-value=1.4e-21  Score=135.24  Aligned_cols=122  Identities=31%  Similarity=0.498  Sum_probs=112.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +++.+.+++|||+|+++++.+...||++|.+.++||+-+|..||+.+..|++.+....+ .+|.++|-||+|+.++.++.
T Consensus        65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~  143 (246)
T KOG4252|consen   65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMD  143 (246)
T ss_pred             hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcc
Confidence            44455667999999999999999999999999999999999999999999999988877 79999999999999989999


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      ..+.+.+++.....++.+|++...|+-.+|..|++.+.+....
T Consensus       144 ~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  144 KGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776544

>cd04154 Arl2 Arl2 subfamily

Probab=99.84  E-value=3.7e-20  Score=130.72  Aligned_cols=110  Identities=23%  Similarity=0.332  Sum_probs=89.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+|||+|++.+..++..+++++|++++|||++++.++.+...|+..+.... ..++|+++|+||+|+.+..  ..+
T Consensus        57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~  134 (173)
T cd04154          57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEE  134 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHH
Confidence            4678999999999999899999999999999999999999998888887775432 2479999999999986432  345


Q ss_pred             HHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           86 DGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        86 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ++..+..     ..+++++++||++|.|++++|++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            5554442     23468999999999999999998863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00157 Rho Rho (Ras homology) family

Probab=99.84  E-value=8.6e-20  Score=128.00  Aligned_cols=116  Identities=33%  Similarity=0.627  Sum_probs=97.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+++||++|++.+......+++.+|++++|||++++.++.... .|+..+..... ++|+++|+||+|+....
T Consensus        42 ~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~  120 (171)
T cd00157          42 TVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDE  120 (171)
T ss_pred             EECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhch
Confidence            34677889999999999988888888899999999999999999988764 67777766554 79999999999986543


Q ss_pred             -----------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238           81 -----------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        81 -----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                                 .+..++...+....+. +++++||+++.|++++|+++++
T Consensus       121 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         121 NTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence                       2346677778888887 9999999999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04157 Arl6 Arl6 subfamily

Probab=99.83  E-value=8.3e-20  Score=127.01  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=87.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc---CCCCeEEEEeeCCCCccccc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA---DSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~~~~   81 (163)
                      ...+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+....   ..++|+++|+||+|+.+.. 
T Consensus        42 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-  120 (162)
T cd04157          42 KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-  120 (162)
T ss_pred             ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-
Confidence            345678999999999999999999999999999999999999988888887775532   2469999999999986432 


Q ss_pred             CCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           82 VTEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        82 ~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                       ..++......     .....++++||++|.|++++|++|.+
T Consensus       121 -~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         121 -TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             -CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence             2222222211     11235899999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.83  E-value=3.8e-20  Score=128.69  Aligned_cols=113  Identities=21%  Similarity=0.328  Sum_probs=86.0

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~   82 (163)
                      ++..+.+++|||+|++.+..++..+++++|++|+|+|++++.++.....++..+.+.. ..++|+++|+||+|+.+..  
T Consensus        39 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--  116 (158)
T cd04151          39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--  116 (158)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--
Confidence            4456789999999999999999999999999999999999888877666555543322 2468999999999986422  


Q ss_pred             CHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           83 TEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ...++.....     ..+.+++++||+++.|++++|++|++
T Consensus       117 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         117 SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            2223222211     11246999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=3e-20  Score=130.62  Aligned_cols=112  Identities=25%  Similarity=0.331  Sum_probs=89.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ...+.+++||++|+..+..++..+++++|++|+|||++++.+++++..|+..+..... .++|+++|+||.|+.+.+.  
T Consensus        40 ~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--  117 (167)
T cd04161          40 LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--  117 (167)
T ss_pred             ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--
Confidence            3457889999999999999999999999999999999999999999999988876533 4689999999999965432  


Q ss_pred             HHHH------HHHHHHc--CCcEEEeccCCC------CCHHHHHHHHHH
Q 031238           84 EEDG------HSLAEKE--GLSFLETSALEA------TNVEKAFQTILT  118 (163)
Q Consensus        84 ~~~~------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~l~~  118 (163)
                      ..+.      ..+++..  .+.++++||++|      .|+++.|+||..
T Consensus       118 ~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         118 GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            2221      2223222  246788999998      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.82  E-value=2.1e-19  Score=127.05  Aligned_cols=111  Identities=24%  Similarity=0.365  Sum_probs=87.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+||++|++.+...+..+++++|++|+|||+++++++.....++..+..... .++|+++++||+|+.+  ....
T Consensus        57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~  134 (174)
T cd04153          57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTP  134 (174)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCH
Confidence            357899999999999999999999999999999999999999888777777654432 4689999999999854  2233


Q ss_pred             HHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           85 EDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        85 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +++.+..     +..+++++++||++|.|++++|++|.+
T Consensus       135 ~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         135 AEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            3332221     223457899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=2.6e-19  Score=125.28  Aligned_cols=110  Identities=24%  Similarity=0.409  Sum_probs=89.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ...+.+|||+|++.+..++..+++++|++++|+|++++.++.....|+..+..... .+.|+++++||+|+...  ...+
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~  126 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE  126 (167)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHH
Confidence            46889999999999999999999999999999999999889888888887765432 46999999999998542  3344


Q ss_pred             HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           86 DGHSLAEK-------EGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        86 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +...+...       .+.+++++||++|+|++++|++|.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         127 EIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            44444332       2347999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.82  E-value=8.8e-19  Score=126.75  Aligned_cols=103  Identities=22%  Similarity=0.382  Sum_probs=87.0

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-------------------CCCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-------------------DSNI   65 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~   65 (163)
                      +..+.++||||+|++.|..++..+|+++|++|+|||++++.||+.+..|+..+....                   ..++
T Consensus        51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (202)
T cd04102          51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI  130 (202)
T ss_pred             CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence            567899999999999999999999999999999999999999999999999997642                   2368


Q ss_pred             eEEEEeeCCCCcccccCCHHH----HHHHHHHcCCcEEEeccCCCC
Q 031238           66 VIMMAGNKSDLNHLRAVTEED----GHSLAEKEGLSFLETSALEAT  107 (163)
Q Consensus        66 piivv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~  107 (163)
                      |+++||||.|+.+.+.+..++    ...++++.+++.+++++..+.
T Consensus       131 PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         131 PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             eEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            999999999997666555543    345678889999988887544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.81  E-value=2.4e-19  Score=124.57  Aligned_cols=111  Identities=21%  Similarity=0.380  Sum_probs=88.1

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+||++|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+...  ...
T Consensus        42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~  119 (160)
T cd04156          42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTA  119 (160)
T ss_pred             CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCH
Confidence            357899999999999999999999999999999999999999988888887765432 47999999999998532  223


Q ss_pred             HHHHHH------HHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           85 EDGHSL------AEKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        85 ~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +++...      +...+++++++||++|+|++++|++|.+
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         120 EEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            333222      1223446899999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.81  E-value=7.4e-19  Score=124.61  Aligned_cols=113  Identities=27%  Similarity=0.456  Sum_probs=93.1

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+||.+|+..++..|+.+++++|++|||+|+++.+.+.+....+..+..... .++|+++++||+|+.+  .+..
T Consensus        56 ~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~  133 (175)
T PF00025_consen   56 KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSE  133 (175)
T ss_dssp             TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTH
T ss_pred             CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchh
Confidence            446789999999999999999999999999999999999889888887777766433 5799999999999864  3445


Q ss_pred             HHHHHHHHH------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEK------EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +++......      ..+.++.+||.+|+|+.+.|+||.+++
T Consensus       134 ~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  134 EEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            555544322      234689999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.80  E-value=3.7e-18  Score=124.60  Aligned_cols=116  Identities=30%  Similarity=0.568  Sum_probs=100.1

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +++.+.+.+|||+|++.+..++..++.+++++|+|||+++..++..+..|+..+..... +.|+++++||.|+.+ +.+.
T Consensus        54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~-~~~~  131 (215)
T PTZ00132         54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKD-RQVK  131 (215)
T ss_pred             CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcc-ccCC
Confidence            67889999999999999999999999999999999999999999999999999876654 689999999999854 3333


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+. ..+++..++.++++||+++.|++++|.++.+.+..
T Consensus       132 ~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        132 ARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN  169 (215)
T ss_pred             HHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            333 35667778899999999999999999999987764

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.80  E-value=3.5e-19  Score=123.61  Aligned_cols=111  Identities=20%  Similarity=0.362  Sum_probs=89.7

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+||++|+..+...+..+++++|++++|||++++.++.....|+..+..... .+.|+++|+||+|+....  ..
T Consensus        41 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~  118 (158)
T cd00878          41 KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SV  118 (158)
T ss_pred             CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CH
Confidence            346899999999999999999999999999999999999999998888887766432 478999999999986433  23


Q ss_pred             HHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           85 EDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        85 ~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ++.......     ...+++++||++|.|++++|++|..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            333333222     2347999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.80  E-value=1.1e-18  Score=124.86  Aligned_cols=111  Identities=22%  Similarity=0.335  Sum_probs=91.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+..  .+..+
T Consensus        62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~  139 (190)
T cd00879          62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEE  139 (190)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHH
Confidence            35788999999999988899999999999999999999999888888888765433 4689999999999853  45566


Q ss_pred             HHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           86 DGHSLAEK----------------EGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        86 ~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +++.+...                ....++++||++++|++++|++|.+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         140 ELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             HHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            66665542                12368999999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01890 LepA LepA subfamily

Probab=99.80  E-value=1.6e-18  Score=122.69  Aligned_cols=111  Identities=24%  Similarity=0.304  Sum_probs=86.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ++..+.+.||||||++++...+..+++++|++|+|||++++.++.....|....    ..++|+++|+||+|+.+..  .
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~  136 (179)
T cd01890          63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--P  136 (179)
T ss_pred             CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--H
Confidence            567788999999999999999999999999999999999876665555554322    1358999999999985422  1


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+...++++..++   .++++||++|.|++++|+++.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            2333455565565   489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.79  E-value=2.2e-18  Score=123.02  Aligned_cols=111  Identities=18%  Similarity=0.280  Sum_probs=89.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+++.+||++|+..+..++..+++++|++|+|+|++++.++.....++..+..... .+.|+++|+||+|+..  .+..+
T Consensus        60 ~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~  137 (184)
T smart00178       60 NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASED  137 (184)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHH
Confidence            46789999999999999999999999999999999999999888888777765322 4689999999999853  34455


Q ss_pred             HHHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           86 DGHSLAEK------------EGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        86 ~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ++.+....            ....++++||++++|+++++++|...
T Consensus       138 ~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      138 ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            54433211            12358999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.79  E-value=7.2e-18  Score=115.07  Aligned_cols=119  Identities=22%  Similarity=0.333  Sum_probs=97.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +..+.+++++||.+|+...+..|+.||..+|++|+|||++|+..+++....+..+..... .+.|++|++||.|+..  .
T Consensus        55 l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~  132 (185)
T KOG0073|consen   55 LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--A  132 (185)
T ss_pred             EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--c
Confidence            456678999999999999999999999999999999999999999988777766655332 5689999999999862  2


Q ss_pred             CCHHH------HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           82 VTEED------GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        82 ~~~~~------~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +..+.      ...+++.+.++.+.|||.+|+++.+.|.|+++.+..+
T Consensus       133 l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  133 LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            22222      2344566678899999999999999999999988763

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.1e-18  Score=119.17  Aligned_cols=118  Identities=19%  Similarity=0.330  Sum_probs=95.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +..+++++.+||.+|+++++.+|.+|+++.+++|||+|.+|.+.+.+.+.-+..+..... .+.|+++++||.|+++...
T Consensus        56 v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   56 VEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             EEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC
Confidence            345678999999999999999999999999999999999999999998877777766654 6899999999999975433


Q ss_pred             CCHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                        ..++.+....     ....+..++|.+|+|+.+.++++...+..
T Consensus       136 --~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  136 --AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             --HHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence              3333332222     23467899999999999999999987754

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.76  E-value=3.2e-18  Score=114.91  Aligned_cols=114  Identities=25%  Similarity=0.441  Sum_probs=92.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      ++...+.+.+||.+|+.+++.+|+.|++++++++||+|+.+++.+...+.-+..+..... .++|++|+|||.|+++  .
T Consensus        60 ~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--A  137 (186)
T KOG0075|consen   60 VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--A  137 (186)
T ss_pred             eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--c
Confidence            566788999999999999999999999999999999999999888777766666665544 6899999999999864  2


Q ss_pred             CCHHHHHHHHHHcC--------CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEG--------LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+...   +....|        +-+|.+|++...|++.+.+||+++..
T Consensus       138 L~~~~---li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  138 LSKIA---LIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             ccHHH---HHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            22222   223333        34899999999999999999998653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.74  E-value=2e-17  Score=113.97  Aligned_cols=110  Identities=24%  Similarity=0.409  Sum_probs=86.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+||++|++.+...+..+++++|++++|+|++++.++.....|+..+..... .++|+++|+||.|+.+...  .+
T Consensus        43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~  120 (159)
T cd04159          43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VD  120 (159)
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HH
Confidence            36789999999999999999999999999999999999888888777777654322 4689999999999864322  22


Q ss_pred             HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ......     ....++++++||+++.|++++|+++.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            221111     112357899999999999999999865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN00023 GTP-binding protein; Provisional

Probab=99.73  E-value=5.1e-17  Score=123.91  Aligned_cols=91  Identities=25%  Similarity=0.536  Sum_probs=79.3

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC------------CCCeEEEEeeC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD------------SNIVIMMAGNK   73 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK   73 (163)
                      +.+.++||||+|++.|..++..++++++++|+|||+++..+++.+..|+..+.....            .++|++|||||
T Consensus        81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK  160 (334)
T PLN00023         81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK  160 (334)
T ss_pred             ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence            568899999999999999999999999999999999999999999999999987531            25899999999


Q ss_pred             CCCcccc---c---CCHHHHHHHHHHcCC
Q 031238           74 SDLNHLR---A---VTEEDGHSLAEKEGL   96 (163)
Q Consensus        74 ~Dl~~~~---~---~~~~~~~~~~~~~~~   96 (163)
                      +||...+   .   +..++++++++++++
T Consensus       161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        161 ADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             ccccccccccccccccHHHHHHHHHHcCC
Confidence            9996542   2   357889999999875

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.73  E-value=5.8e-17  Score=113.45  Aligned_cols=112  Identities=21%  Similarity=0.230  Sum_probs=79.8

Q ss_pred             EEEEEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            6 KTVKAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.+.+.||||||+....         .........+|++|+|+|+++..+  ++....|+..+..... +.|+++|+||.
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-~~pvilv~NK~  123 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-NKPVIVVLNKI  123 (168)
T ss_pred             CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC-cCCeEEEEEcc
Confidence            34789999999973210         111111223689999999998654  3555677777765432 68999999999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      |+.....+..  ...+....+.+++++||+++.|++++|+++.+.+
T Consensus       124 Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         124 DLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            9865443322  4445555567899999999999999999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.72  E-value=2.3e-16  Score=110.94  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=83.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ...+.+||++|+..+...+..+++++|++++|+|+++..++.....|+..+..... .++|+++++||.|+.+..  ..+
T Consensus        57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~  134 (173)
T cd04155          57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE  134 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH
Confidence            35789999999999988888999999999999999998888887777766654422 469999999999985422  122


Q ss_pred             HHHHHHHHcCC--------cEEEeccCCCCCHHHHHHHHHH
Q 031238           86 DGHSLAEKEGL--------SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        86 ~~~~~~~~~~~--------~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +   +.+..++        +++++||++|+|++++|++|++
T Consensus       135 ~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         135 E---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             H---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            2   2222222        4789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.71  E-value=1.9e-16  Score=122.50  Aligned_cols=115  Identities=14%  Similarity=0.042  Sum_probs=88.8

Q ss_pred             EEEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~   78 (163)
                      ..+.+||+||..+       .......++++++++|+|+|+++.++++++..|..++..+..  .++|+++|+||+|+.+
T Consensus       206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence            4689999999742       112222346689999999999987788888999998887654  3689999999999865


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...+..+..+.+....+.+++++||++++|++++++++.+.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            44443444555555566889999999999999999999887654

>cd01898 Obg Obg subfamily

Probab=99.71  E-value=1.1e-16  Score=112.05  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=83.7

Q ss_pred             EEEEEEeCCChhh----Hhhhhhhh---hcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQER----YRAITSAY---YRGAVGALLVYDITKR-QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~   77 (163)
                      ..+.||||||...    ...+...+   +..+|++++|+|++++ .+++.+..|.+.+.....  ..+|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            4789999999632    22223333   4469999999999998 788888888888876542  368999999999986


Q ss_pred             ccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +.... .+....+.... +.+++++||+++.|++++|+++.+.
T Consensus       128 ~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             Cchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            54433 34445555553 6789999999999999999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=7.5e-16  Score=102.84  Aligned_cols=116  Identities=22%  Similarity=0.406  Sum_probs=93.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +..+++.+.+||.+|++..+.+|++||.+..++|||+|..+.+.+++.++-+..+..... .+.|++|.+||.|+++.+ 
T Consensus        56 VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~-  134 (180)
T KOG0071|consen   56 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM-  134 (180)
T ss_pred             EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc-
Confidence            456788999999999999999999999999999999999998888888766666655444 679999999999997544 


Q ss_pred             CCHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKE-----GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ...+++.+...-     ..-+.++||.+|.|+.+.|.|+...+
T Consensus       135 -~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  135 -KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             -CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence             345554443222     23478999999999999999998754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.67  E-value=5.2e-15  Score=100.23  Aligned_cols=114  Identities=48%  Similarity=0.830  Sum_probs=87.7

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHH-HhhcCCCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .+....+.+||++|...+...+...++.+|++++|+|++++.++.....|+... ......++|+++++||.|+......
T Consensus        41 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~  120 (157)
T cd00882          41 DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV  120 (157)
T ss_pred             CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch
Confidence            345778999999999988888888999999999999999998888887763222 2222357999999999998643333


Q ss_pred             CHHH-HHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238           83 TEED-GHSLAEKEGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      .... ..........+++++|+..+.|++++++++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         121 SEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            2222 3334445567899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04171 SelB SelB subfamily

Probab=99.67  E-value=1.5e-15  Score=105.51  Aligned_cols=106  Identities=19%  Similarity=0.100  Sum_probs=74.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--   81 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--   81 (163)
                      ...+.+|||||++++......+++++|++++|+|+++   +++.+.+.    .+... + ..|+++++||+|+.....  
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~  123 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLE  123 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHH
Confidence            3578999999999987766677899999999999987   33333222    12111 2 248999999999864321  


Q ss_pred             CCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEK---EGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        82 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ...++..+..+.   .+.+++++||+++.|++++|+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            112333344443   3568999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.67  E-value=5.8e-16  Score=105.71  Aligned_cols=98  Identities=20%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             EEEeCCCh-----hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238           11 QIWDTAGQ-----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus        11 ~l~Dt~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+|||+|.     ..+..+.. .++++|++|+|||++++.++.. ..|....      ..|+++|+||+|+.+ +....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence            68999998     23444443 5899999999999999888654 2343321      249999999999854 344566


Q ss_pred             HHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHH
Q 031238           86 DGHSLAEKEGL-SFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        86 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      +.+++++..+. +++++||+++.|++++|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            67777777776 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-15  Score=102.75  Aligned_cols=114  Identities=22%  Similarity=0.376  Sum_probs=99.3

Q ss_pred             EEEEEeCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238            9 KAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         9 ~l~l~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      ++.||||+|...+ ..+-++|++-+|++++|||..+++||+.+..+-..|.+... ..+||+|++||.|+.+.+.+..+.
T Consensus        61 ~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~  140 (198)
T KOG3883|consen   61 QLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV  140 (198)
T ss_pred             eEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence            6889999999887 66788999999999999999999999987766666655443 579999999999998888888999


Q ss_pred             HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           87 GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        87 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+.|++...+..++++|.+...+-+-|..+...+..
T Consensus       141 A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  141 AQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             HHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence            999999989999999999999988888888777654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.67  E-value=1.6e-15  Score=104.80  Aligned_cols=105  Identities=18%  Similarity=0.137  Sum_probs=79.0

Q ss_pred             EEEEEEeCCChhhHhh------hhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRA------ITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||||+..+..      ++..++.  ++|++|+|+|+++++...   .|+..+..   .++|+++|+||+|+.+.
T Consensus        43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK  116 (158)
T ss_pred             eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc
Confidence            4689999999976553      3555664  999999999998864432   34434333   25899999999999654


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ..+.. ..+.+....+.+++++||.++.|++++++++.+.
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         117 RGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             ccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            44433 3456667778899999999999999999988765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.66  E-value=1.1e-15  Score=103.72  Aligned_cols=121  Identities=24%  Similarity=0.490  Sum_probs=101.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc----
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN----   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----   77 (163)
                      .+.|..+.+.+||.+|++++..+.....+++.+++|+||++.+..++.+..|+.+.+..++..+|+ +||+|.|..    
T Consensus        63 ~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp  141 (205)
T KOG1673|consen   63 SIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLP  141 (205)
T ss_pred             EecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCC
Confidence            457788899999999999999999999999999999999999999999999999998887766775 689999952    


Q ss_pred             cc-ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HL-RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+ ..-.-.+...+++-.+...+++|+..+.|++.+|.-++..+.+.
T Consensus       142 ~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  142 PELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCC
Confidence            11 11112345667888899999999999999999999998887664

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.65  E-value=2.3e-15  Score=124.22  Aligned_cols=111  Identities=23%  Similarity=0.280  Sum_probs=86.8

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ++..+.+.||||||+.+|...+..+++.+|++|+|||++++.+......|...+.    .++|+++|+||+|+....  .
T Consensus        66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~  139 (595)
T TIGR01393        66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P  139 (595)
T ss_pred             CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence            4667899999999999999999999999999999999998766665555544332    258999999999985321  1


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+...++.+..++   .++++||++|.|++++|+++.+.+
T Consensus       140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            2233445555565   489999999999999999998765

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.65  E-value=1.5e-14  Score=105.52  Aligned_cols=122  Identities=39%  Similarity=0.584  Sum_probs=95.5

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc-----
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR-----   80 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~-----   80 (163)
                      .+.+.+|||+|+++++.++..++.+++++++|||.++..+ ++....|...+....+...|+++++||+|+....     
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~  132 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE  132 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence            6789999999999999999999999999999999999555 4455789988887765569999999999996543     


Q ss_pred             -------cCCHHHHHHHHHHc---CCcEEEeccC--CCCCHHHHHHHHHHHHHHHHhHhH
Q 031238           81 -------AVTEEDGHSLAEKE---GLSFLETSAL--EATNVEKAFQTILTEIYHIISKKA  128 (163)
Q Consensus        81 -------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~~~~~  128 (163)
                             ..............   ...++++|++  .+.++.++|..++..+........
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~  192 (219)
T COG1100         133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV  192 (219)
T ss_pred             HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence                   22222222222222   3348999999  999999999999999877654443

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4.9e-16  Score=107.13  Aligned_cols=115  Identities=23%  Similarity=0.362  Sum_probs=92.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ...+.|||.+|++..+++|..||..++++|+++|+++++-|++....+..+..... .++|+++.+||.|+.+...+  .
T Consensus        68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--~  145 (197)
T KOG0076|consen   68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--A  145 (197)
T ss_pred             cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--H
Confidence            34678999999999999999999999999999999999999988877777765543 68999999999998654332  2


Q ss_pred             HHHHH---HHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           86 DGHSL---AEKE---GLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        86 ~~~~~---~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ++...   ++..   ...+.++||.+|+||++..+|+...+...
T Consensus       146 El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  146 ELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             HHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            22222   2222   35799999999999999999999877553

>cd01878 HflX HflX subfamily

Probab=99.64  E-value=2.4e-15  Score=108.75  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .+.||||+|...         +...+ ..+.++|++++|+|++++.++.....|...+......++|+++|+||+|+...
T Consensus        90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence            788999999732         22222 23678999999999999888877767766665554446899999999998543


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ...     .......+.+++++||+++.|+++++++|...
T Consensus       169 ~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         169 EEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             HHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            322     13344445689999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.64  E-value=3.9e-15  Score=115.04  Aligned_cols=112  Identities=16%  Similarity=0.087  Sum_probs=84.6

Q ss_pred             EEEEEEeCCChhhH----hhhhhh---hhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQERY----RAITSA---YYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~----~~~~~~---~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D   75 (163)
                      ..++|||+||....    ..+...   .+.+++++|+|+|+++.   ++++++..|..++..+..  ..+|+++|+||+|
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D  284 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID  284 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence            57899999997421    122223   35579999999999976   677888888888776643  4689999999999


Q ss_pred             CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..... ..+..+.+.+..+.+++++||++++|++++++++.+.+
T Consensus       285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            865432 23444556666678899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.63  E-value=2.9e-15  Score=107.69  Aligned_cols=106  Identities=19%  Similarity=0.134  Sum_probs=75.3

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-   81 (163)
                      ++++.+.+.||||||+++|...+..+++++|++++|||+++.. +.....++..+..   .++|+++|+||+|+...+. 
T Consensus        60 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~  135 (194)
T cd01891          60 VTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPE  135 (194)
T ss_pred             EEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHH
Confidence            4455678999999999999999999999999999999998742 2233333443332   3689999999999854221 


Q ss_pred             CCHHHHHHHHH-------HcCCcEEEeccCCCCCHHHH
Q 031238           82 VTEEDGHSLAE-------KEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        82 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~  112 (163)
                      ...++...+..       ..+++++++||++|.|+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         136 EVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            11233444432       23578999999999887544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.62  E-value=1.5e-14  Score=98.96  Aligned_cols=113  Identities=35%  Similarity=0.560  Sum_probs=86.7

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh-hHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR-QTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +++..+.+.+||++|+..+..++..+++.++++++++|+... .++.... .|...+......+.|+++++||.|+....
T Consensus        45 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  124 (161)
T TIGR00231        45 EDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK  124 (161)
T ss_pred             ECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch
Confidence            455558899999999999999999999999999999999877 6666654 66666655544368999999999986433


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI  116 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  116 (163)
                       ........+......+++++||+++.|++++|++|
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231       125 -LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             -hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence             23333333333345689999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.62  E-value=9.4e-15  Score=102.04  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=76.4

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-HH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-EE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~   85 (163)
                      ...+.+|||||+..+..++...+..+|++++|+|+++..... ....+..+..   .++|+++|+||+|+....... .+
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~  124 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKN  124 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHH
Confidence            567899999999999988888999999999999998743211 1111222222   358999999999985322100 11


Q ss_pred             HHHHHHH----Hc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           86 DGHSLAE----KE--GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        86 ~~~~~~~----~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ....+..    ..  ..+++++||++++|++++++++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            1111111    11  35799999999999999999998754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.61  E-value=4.7e-15  Score=104.23  Aligned_cols=113  Identities=22%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             EEEEEEEeCCChhhH----hhhh---hhhhcCCcEEEEEEECCCh------hHHHHHHHHHHHHHhhcC-------CCCe
Q 031238            7 TVKAQIWDTAGQERY----RAIT---SAYYRGAVGALLVYDITKR------QTFDNVLRWLRELRDHAD-------SNIV   66 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~----~~~~---~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p   66 (163)
                      ...+.||||||....    +.++   ...++++|++++|+|+++.      .++++...|...+.....       .++|
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP  122 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence            456899999997432    1222   2347789999999999987      567777777777754432       2689


Q ss_pred             EEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        67 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +++|+||+|+..................+.+++++||+++.|++++++++.+.
T Consensus       123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            99999999986544332222223333445689999999999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.61  E-value=7.7e-15  Score=106.33  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=75.0

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-   82 (163)
                      .++.||||||++.+.......+..+|++++|+|++++    ++++.+..|    ... . ..|+++|+||+|+.+.... 
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~-~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-G-LKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-C-CCcEEEEEEchhccCHHHHH
Confidence            6789999999998877777778889999999999873    223322222    211 1 2579999999998642211 


Q ss_pred             -CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 -TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ..+.++++....   +.+++++||++|+|++++|+.+.+.+
T Consensus       157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence             112333333332   46799999999999999999887654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.60  E-value=2e-14  Score=118.81  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=85.4

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +++.+.+.||||||+.++...+..+++.+|++|+|+|++++........|....    ..++|+++|+||+|+....  .
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~  143 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--P  143 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--H
Confidence            556789999999999999988999999999999999999875554444443322    1268999999999985322  1


Q ss_pred             HHHHHHHHHHcCCc---EEEeccCCCCCHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGLS---FLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .....++.+..++.   ++++||++|.|++++++++.+.+.
T Consensus       144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            22233444445553   899999999999999999988764

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=3.8e-15  Score=99.93  Aligned_cols=118  Identities=19%  Similarity=0.258  Sum_probs=89.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +.++++.+++||.+|+-..+..|+.||.+.|++|||+|.+|...+......+..+..... ....++|++||.|..... 
T Consensus        57 v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-  135 (182)
T KOG0072|consen   57 VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-  135 (182)
T ss_pred             cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-
Confidence            456788999999999999999999999999999999999997766555555555544333 457889999999985322 


Q ss_pred             CCHHHHH-----HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGH-----SLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                       ...+..     .-.+..-..+++.||.+|+|++++++|+.+.+..
T Consensus       136 -t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  136 -TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             -hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence             122211     1112223579999999999999999999987743

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.59  E-value=1.6e-14  Score=100.78  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=75.6

Q ss_pred             EEeCCCh-----hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238           12 IWDTAGQ-----ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus        12 l~Dt~G~-----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +|||||.     +.+..+. ..++++|++++|+|+++..++.  ..|+..+   . .+.|+++++||.|+.+   ...+.
T Consensus        41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~  110 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAA  110 (158)
T ss_pred             cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHH
Confidence            6999997     3333333 3478999999999999876652  2343332   1 2578999999999854   23556


Q ss_pred             HHHHHHHcCC--cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           87 GHSLAEKEGL--SFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        87 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ...++.+.++  +++++||++++|++++|+.+.+.+.+.
T Consensus       111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        111 TRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             HHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            6677777775  899999999999999999988776443

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.57  E-value=1.8e-15  Score=105.49  Aligned_cols=115  Identities=30%  Similarity=0.576  Sum_probs=97.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcccccC-
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~~~~-   82 (163)
                      ++++|||++|++++..+.+-+|+.+++.++|||++....|+....|.+.+.....    .++|+++.+||+|....... 
T Consensus        75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~  154 (229)
T KOG4423|consen   75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE  154 (229)
T ss_pred             HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence            4778999999999999999999999999999999999999999999988754322    46889999999998543222 


Q ss_pred             CHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...++.++++++|+ .++++|++.+.|+.|+-..+++.+.-
T Consensus       155 ~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lv  195 (229)
T KOG4423|consen  155 ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILV  195 (229)
T ss_pred             hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHh
Confidence            24678888999998 69999999999999998888876654

>cd01894 EngA1 EngA1 subfamily

Probab=99.57  E-value=3.1e-14  Score=98.07  Aligned_cols=103  Identities=19%  Similarity=0.083  Sum_probs=72.7

Q ss_pred             EEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||||...+..        .....++++|++++|+|+.++.+.... .+...+..   .+.|+++|+||+|+...
T Consensus        45 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~  120 (157)
T cd01894          45 REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKE  120 (157)
T ss_pred             eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCCh
Confidence            5689999999876433        334568899999999999875443322 22222222   25899999999998643


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ...     .......++ +++++|++++.|++++|+++.+.
T Consensus       121 ~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         121 EDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             HHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            221     222334555 78999999999999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.56  E-value=5.7e-14  Score=100.79  Aligned_cols=114  Identities=14%  Similarity=-0.000  Sum_probs=75.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--   82 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--   82 (163)
                      ++.+.+.+|||||+..+..........+|++++|+|++++........+.  +...  .++|+++++||+|+......  
T Consensus        65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~  140 (192)
T cd01889          65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER  140 (192)
T ss_pred             ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence            34678999999999765333333456789999999998754333322222  1122  25799999999998532211  


Q ss_pred             CHHHHHHHHH-------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAE-------KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++..+...       ..+++++++||+++.|++++++.+.+++.-
T Consensus       141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            1222222211       135689999999999999999999887743

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.55  E-value=6e-14  Score=99.55  Aligned_cols=110  Identities=22%  Similarity=0.220  Sum_probs=80.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~   84 (163)
                      ...+.||||||...+...+..+++.+|++++|+|++++.+... ..++..+..   .+.|+++++||+|+......  ..
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~  136 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL  136 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence            4578999999999888888889999999999999987654332 233333332   36899999999998642221  12


Q ss_pred             HHHHHHHHH--------------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEK--------------EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +...+....              ...+++++||+++.|++++|+++.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            233333333              245799999999999999999988775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.55  E-value=1e-13  Score=108.02  Aligned_cols=105  Identities=20%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             EEEEEEeCCCh---------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+.||||+|.         +.+...+ ..+.++|++++|+|++++.+++....|...+......++|+++|+||+|+..
T Consensus       237 ~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       237 GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence            47889999997         2233333 3488999999999999988877766665555544334689999999999854


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ..     ....+ .....+++++||+++.|++++++.|.+.
T Consensus       316 ~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       316 EP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             hH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            22     11111 1222468999999999999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK04213 GTP-binding protein; Provisional

Probab=99.54  E-value=1.8e-14  Score=103.93  Aligned_cols=106  Identities=25%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             EEEEEeCCC-----------hhhHhhhhhhhhc----CCcEEEEEEECCChhHH-HH---------HHHHHHHHHhhcCC
Q 031238            9 KAQIWDTAG-----------QERYRAITSAYYR----GAVGALLVYDITKRQTF-DN---------VLRWLRELRDHADS   63 (163)
Q Consensus         9 ~l~l~Dt~G-----------~~~~~~~~~~~~~----~~d~ii~v~d~~~~~s~-~~---------~~~~~~~i~~~~~~   63 (163)
                      .+.+|||||           ++.++..+..++.    .++++++|+|.++...+ +.         ...+...+.   ..
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~  129 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---EL  129 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---Hc
Confidence            578999999           5667766666654    35788888888653221 00         011122221   13


Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCC---------cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL---------SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ++|+++|+||+|+.+..   .+...++++..++         +++++||++| |++++|++|.+.+.
T Consensus       130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            68999999999985433   3344555555554         4799999999 99999999988763

>TIGR00436 era GTP-binding protein Era

Probab=99.54  E-value=9.9e-14  Score=104.68  Aligned_cols=107  Identities=18%  Similarity=0.053  Sum_probs=75.6

Q ss_pred             EEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .++.||||||....        ......+++++|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+...
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK  122 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH
Confidence            46899999997432        112345678999999999999876653  333333332   25899999999998532


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .. ..+....+....++ +++++||++|.|++++++.+.+.+
T Consensus       123 ~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l  163 (270)
T TIGR00436       123 DK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHL  163 (270)
T ss_pred             HH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            22 22334445444455 799999999999999999987765

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=1.1e-13  Score=111.92  Aligned_cols=115  Identities=23%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             ecCEEEEEEEEeCCCh----------hhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQ----------ERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~----------~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      +++.  .+.||||+|.          +.+..+. ..+++++|++|+|+|++++.++.++. ++..+..   .++|+|+|+
T Consensus       256 ~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~  329 (472)
T PRK03003        256 LGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAF  329 (472)
T ss_pred             ECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence            3444  4579999995          3343332 34578999999999999987776653 3444332   368999999


Q ss_pred             eCCCCcccccC--CHHHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHLRAV--TEEDGHS-LAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        72 nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ||+|+.+....  ...+... +......+++++||++|.|++++|+.+.+.+...
T Consensus       330 NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        330 NKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             ECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            99999642111  0111111 1111235899999999999999999998876543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.53  E-value=3.2e-14  Score=105.90  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=78.3

Q ss_pred             hhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCc
Q 031238           19 ERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS   97 (163)
Q Consensus        19 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~   97 (163)
                      ++++.+.+.+++++|++++|||++++. +++.+..|+..+..   .++|+++|+||+||.+.+.+..+....+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            678888999999999999999999887 89999999876643   3689999999999965444433444444 457889


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 031238           98 FLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        98 ~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ++++||+++.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998863

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=3e-13  Score=107.43  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             EEEEEEEeCCChhh----Hhhhhhhh---hcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238            7 TVKAQIWDTAGQER----YRAITSAY---YRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKS   74 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~   74 (163)
                      ...+.|||+||...    ...+...+   +.+++++|+|+|+++.   +++++...|..++..+..  .++|++||+||+
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~  284 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM  284 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence            34689999999743    11233333   5569999999999864   567777788888877644  368999999999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      |+..    ..+..+.+.+..+.+++++||++++|++++++++.+.+..
T Consensus       285 DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        285 DLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9842    2344555666666789999999999999999999887754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.52  E-value=1.2e-13  Score=110.53  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=78.8

Q ss_pred             EEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.+.+|||||.+.+..        ....+++++|++++|||++++.+++..  |+..+..   .++|+++|+||+|+...
T Consensus       251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc
Confidence            4568999999854432        123578899999999999988777654  6555432   36899999999998542


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                            ....+++..+.+++++||++ .|++++|+.+.+.+.+..
T Consensus       326 ------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       326 ------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             ------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence                  12344556677899999997 699999999998887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.51  E-value=1.9e-13  Score=94.04  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             EEEEEEEeCCChhhHhh--------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYRA--------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ...+.+|||+|...+..        .....+.++|++++|+|++++.+......+..      ....|+++|+||.|+..
T Consensus        48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~  121 (157)
T cd04164          48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP  121 (157)
T ss_pred             CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence            35789999999754321        12346789999999999998777665544332      23689999999999864


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ....       .....+.+++++||+++.|+++++++|...+
T Consensus       122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            3322       2333456899999999999999999987654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.50  E-value=3e-13  Score=105.13  Aligned_cols=107  Identities=23%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             EEEEEEEeCCChhh-Hhhh-------hhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQER-YRAI-------TSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~-~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..++.||||||... +..+       ....+.++|++++|+|.++.  +.... .|+..+...   +.|+++|+||+|+.
T Consensus        99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~  173 (339)
T PRK15494         99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIE  173 (339)
T ss_pred             CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCc
Confidence            35689999999842 2221       11347899999999998763  33433 344444332   45778899999985


Q ss_pred             ccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +.   ......+++...+  ..++++||++|.|++++|++|.+.+.
T Consensus       174 ~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        174 SK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             cc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            42   2344555554443  47999999999999999999887653

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.50  E-value=9.3e-14  Score=111.55  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             EEEEEEeCCChhhHhhh--------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRAI--------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|.+.+...        ...+++++|++++|||++++.++++...|..      ..+.|+++|+||+|+...
T Consensus       263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~  336 (449)
T PRK05291        263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGE  336 (449)
T ss_pred             eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcccc
Confidence            46799999998654321        2346889999999999998877765544432      236899999999998643


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ....        ...+.+++++||++|.|++++++++.+.+..
T Consensus       337 ~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        337 IDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             chhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            3221        2335679999999999999999999987753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.50  E-value=4.6e-13  Score=107.89  Aligned_cols=117  Identities=15%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             EEEEEEEeCCChhh----Hhhh---hhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcC-----------CC
Q 031238            7 TVKAQIWDTAGQER----YRAI---TSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHAD-----------SN   64 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~----~~~~---~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~-----------~~   64 (163)
                      ...+.|||+||...    ...+   .-.++.++|++|+|+|+++.    +.+.++..|..++..+..           ..
T Consensus       205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~  284 (500)
T PRK12296        205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE  284 (500)
T ss_pred             CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence            35789999999632    1111   12246789999999999752    345555555555544421           35


Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +|+|||+||+|+.+...+ .+.........+++++++||++++|+++++++|.+.+...+
T Consensus       285 kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        285 RPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            899999999999654332 22223333445789999999999999999999998876543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.50  E-value=4.8e-14  Score=94.41  Aligned_cols=110  Identities=25%  Similarity=0.347  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+++.+||.+|++..+..|..||.+.|++|||+|.+|...|+++..-+.++....+ ..+|+++.+||.|+.-...+  +
T Consensus        61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~--e  138 (185)
T KOG0074|consen   61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV--E  138 (185)
T ss_pred             cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch--H
Confidence            37899999999999999999999999999999999999889988766666665544 67999999999998643333  2


Q ss_pred             HHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           86 DGHSL-----AEKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        86 ~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ++..-     .+....++.++||.+++|+....+++..
T Consensus       139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            22111     1112236889999999999888887654

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.49  E-value=5.3e-13  Score=111.88  Aligned_cols=105  Identities=27%  Similarity=0.295  Sum_probs=78.0

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      +....+.||||||++.|..++...++.+|++|+|+|++++   ++++.+.    .+.   ..++|+|+++||+|+.... 
T Consensus       292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k---~~~iPiIVViNKiDl~~~~-  363 (742)
T CHL00189        292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ---AANVPIIVAINKIDKANAN-  363 (742)
T ss_pred             CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH---hcCceEEEEEECCCccccC-
Confidence            3457899999999999999999999999999999999874   3333322    221   2368999999999985421 


Q ss_pred             CCHHHHHHH-------HHHcC--CcEEEeccCCCCCHHHHHHHHHHH
Q 031238           82 VTEEDGHSL-------AEKEG--LSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        82 ~~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                        .+.....       ...++  ++++++||++|.|++++|+++...
T Consensus       364 --~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        364 --TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             --HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence              2222211       12233  579999999999999999988765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.49  E-value=5.1e-13  Score=106.78  Aligned_cols=109  Identities=27%  Similarity=0.188  Sum_probs=74.3

Q ss_pred             EEEEEeCCChhhHhh----------h-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQERYRA----------I-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~----------~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+|||||..++..          . ...+++.+|++|+|+|++++.+..+. .++..+..   .++|+++|+||+|+.
T Consensus       221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccC
Confidence            688999999744321          1 12468899999999999987665544 23333322   368999999999986


Q ss_pred             ccccCCHHHHHH-HHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHS-LAEKE----GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +... ..+.... +....    .++++++||++|.|++++|+++.+.+..
T Consensus       297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2111 1222222 22221    3689999999999999999999987654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.48  E-value=4.3e-13  Score=110.53  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=74.1

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH   88 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~   88 (163)
                      .+.||||||++.|..++...+..+|++|+|+|++++..-.. ...+....   ..++|+++++||+|+.+.   ..+...
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~  208 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHAK---AANVPIIVAINKIDKPEA---NPDRVK  208 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHHH---HcCCCEEEEEECcccccC---CHHHHH
Confidence            68899999999999998888999999999999987422111 11122221   136899999999998532   223333


Q ss_pred             HHHHHcC---------CcEEEeccCCCCCHHHHHHHHHH
Q 031238           89 SLAEKEG---------LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        89 ~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ......+         .+++++||++|+|++++|+++..
T Consensus       209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            3332222         36899999999999999998863

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.48  E-value=3.7e-13  Score=108.85  Aligned_cols=105  Identities=25%  Similarity=0.225  Sum_probs=73.9

Q ss_pred             EEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            9 KAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         9 ~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.||||+|.+.        +...+..+++.+|++|+|||++++.++.. ..|...+..   .++|+++|+||+|+....
T Consensus        87 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~  162 (472)
T PRK03003         87 RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE  162 (472)
T ss_pred             EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc
Confidence            578999999752        34445667899999999999998755432 233333332   368999999999985321


Q ss_pred             cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                         .+..+.+  ..++ .++++||++|.|++++|+++++.+..
T Consensus       163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence               1222222  2344 46899999999999999999987744

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.48  E-value=3.2e-13  Score=111.62  Aligned_cols=106  Identities=22%  Similarity=0.227  Sum_probs=78.8

Q ss_pred             EEEEEEeCCChhhHhhh------hhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRAI------TSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .++++|||||...+...      .+.++  .++|++++|+|+++.+.   ...+..++.+   .++|+++++||+|+.++
T Consensus        41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK  114 (591)
T ss_pred             eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh
Confidence            45789999998776432      34443  37899999999987432   2233333332   36899999999998655


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+. ...+.+.+..+++++++||++|+|++++++.+.+..
T Consensus       115 ~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       115 KGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             CCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5543 345677888899999999999999999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.47  E-value=7.9e-13  Score=109.15  Aligned_cols=107  Identities=20%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC-
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~-   82 (163)
                      ..+.|||+||+++|.......+.++|++++|+|+++   +++.+.+.    .+. .  .++| +++++||+|+.+...+ 
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~-~--lgi~~iIVVlNK~Dlv~~~~~~  122 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLD-L--LGIPHTIVVITKADRVNEEEIK  122 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHH-H--cCCCeEEEEEECCCCCCHHHHH
Confidence            678999999999998777778899999999999997   34443332    222 1  2467 9999999998653322 


Q ss_pred             -CHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           83 -TEEDGHSLAEKE----GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        83 -~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                       ..+++..+.+..    +.+++++||++|.|++++++.+...+.
T Consensus       123 ~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~  166 (581)
T TIGR00475       123 RTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE  166 (581)
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence             133455555544    468999999999999999988766553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.47  E-value=6e-13  Score=95.23  Aligned_cols=112  Identities=23%  Similarity=0.247  Sum_probs=78.4

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-C
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-T   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~   83 (163)
                      .....+.|+|+||+..|.......++.+|++|+|+|+.++.... ....+..+...   ++|+++++||+|+...+.. .
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~  142 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEI  142 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHH
Confidence            34567899999999998887777899999999999998764322 22333333322   6889999999998622110 1


Q ss_pred             HHHHH-HHHHHcC------CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGH-SLAEKEG------LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~-~~~~~~~------~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .++.. .+.+..+      ++++++||.+|.|++++++.+.+.+
T Consensus       143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            12222 3333332      4699999999999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=1.9e-12  Score=90.36  Aligned_cols=107  Identities=25%  Similarity=0.372  Sum_probs=86.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      ..+.|+|||||++++.+|+.++++++++|+++|.+.+..+ .....+..+....  .+|++|+.||+||.+.  .+.+.+
T Consensus        68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a--~ppe~i  142 (187)
T COG2229          68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDA--LPPEKI  142 (187)
T ss_pred             ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCC--CCHHHH
Confidence            4678999999999999999999999999999999998887 4444444444332  3899999999999753  345666


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +++.+..  ..++++++|..+.+..+.++.+...
T Consensus       143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            6665554  7799999999999999988887765

>PRK11058 GTPase HflX; Provisional

Probab=99.45  E-value=1.3e-12  Score=104.07  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=75.6

Q ss_pred             EEEEEeCCChhhH--hhhh------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            9 KAQIWDTAGQERY--RAIT------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         9 ~l~l~Dt~G~~~~--~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+|||+|..+.  ..++      ...++.+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+....
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~  325 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF  325 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence            5689999998331  1122      2346889999999999998877776554444443333468999999999985321


Q ss_pred             cCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .   ....  ....+.+ ++++||++|.|++++++++.+.+..
T Consensus       326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            1   1111  1123444 5889999999999999999988743

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.45  E-value=4.3e-13  Score=88.77  Aligned_cols=72  Identities=33%  Similarity=0.705  Sum_probs=58.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH---HHHHHHhhcCCCCeEEEEeeCCC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR---WLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      +.+....+.+||++|++.+...+..++.++|++++|||++++.+++.+..   |+..+..... ++|+++|+||.|
T Consensus        45 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   45 VDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             ETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             ecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            34555568999999999998888888999999999999999999988754   5555554434 699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.45  E-value=1e-12  Score=110.96  Aligned_cols=101  Identities=22%  Similarity=0.267  Sum_probs=74.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.||||||+..|..++...++.+|++|+|||++++   ++.+.+    ....   ..++|+|+++||+|+....   .
T Consensus       337 ~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a~---~  406 (787)
T PRK05306        337 GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGAN---P  406 (787)
T ss_pred             EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECccccccC---H
Confidence            5688999999999999988889999999999999874   333222    2221   2368999999999985421   1


Q ss_pred             HHHHH-------HHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238           85 EDGHS-------LAEKEG--LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        85 ~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +....       +...++  ++++++||++|.|++++|+++..
T Consensus       407 e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        407 DRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             HHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            22111       122333  57999999999999999999875

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.44  E-value=6.1e-13  Score=106.37  Aligned_cols=109  Identities=20%  Similarity=0.150  Sum_probs=74.0

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ....+.+.||||||+++|.......+..+|++|+|+|+++++++..  ...++. +....+ ..|+++++||+|+.+...
T Consensus        81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~-~~~iIVviNK~Dl~~~~~  158 (426)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG-INQLIVAINKMDSVNYDE  158 (426)
T ss_pred             ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC-CCeEEEEEEChhccCccH
Confidence            3445789999999999886655556789999999999998754311  111111 222222 357999999999853111


Q ss_pred             ----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238           82 ----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        82 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  114 (163)
                          ...+++..+++..+     ++++++||++|.|+.+.+.
T Consensus       159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence                11345556666655     4689999999999987553

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd00880 Era_like Era (E

Probab=99.44  E-value=9.7e-13  Score=90.00  Aligned_cols=108  Identities=20%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             EEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            8 VKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      ..+.+||++|.....       .....+++.+|++++|+|++++....... ++....   ..+.|+++|+||.|+....
T Consensus        45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~  120 (163)
T cd00880          45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEE  120 (163)
T ss_pred             CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChh
Confidence            468999999976543       23445789999999999999876655443 333332   2368999999999985432


Q ss_pred             cCCHH---HHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           81 AVTEE---DGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        81 ~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .....   .........+.+++++||.++.|++++++++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             hHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            22111   0112222335689999999999999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.42  E-value=1.7e-12  Score=102.23  Aligned_cols=112  Identities=23%  Similarity=0.277  Sum_probs=89.1

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +|..|.|.|+||||+.+|.......+..|.|.++|+|++++...+.+.+.+.-+.    .+..+|-|.||+||+....  
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--  145 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--  145 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--
Confidence            5688999999999999998888889999999999999999877666666555443    3578889999999975332  


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +...+++..-.|+   ..+.+||++|.||+++++.+++.+.
T Consensus       146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence            2333444455576   4799999999999999998887763

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.4e-13  Score=96.29  Aligned_cols=115  Identities=33%  Similarity=0.574  Sum_probs=98.2

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      .+.+++..|||+|++.+..+...+|=.+.+.|++||++..-.+.++..|...+.+... ++||++.|||.|... +.+ .
T Consensus        56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~-r~~-k  132 (216)
T KOG0096|consen   56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKA-RKV-K  132 (216)
T ss_pred             cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccc-ccc-c
Confidence            3468999999999999999999999999999999999999999999999999998887 699999999999854 322 2


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .....+.+..+++|+++||+++.|.+.-|-++.+.+..
T Consensus       133 ~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  133 AKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             cccceeeecccceeEEeecccccccccchHHHhhhhcC
Confidence            23334556678999999999999999999999887754

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.42  E-value=3.7e-12  Score=100.54  Aligned_cols=113  Identities=19%  Similarity=0.081  Sum_probs=82.0

Q ss_pred             EEEEEeCCChhhH-------hhhhhhhhcCCcEEEEEEECC---ChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERY-------RAITSAYYRGAVGALLVYDIT---KRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~-------~~~~~~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl   76 (163)
                      .+.|+||||...-       .......+.++|++++|+|++   +.+.+++...|+.++..+..  .++|+++|+||+|+
T Consensus       208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl  287 (390)
T PRK12298        208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL  287 (390)
T ss_pred             EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence            5899999997531       111123578999999999998   44567777778887776543  35899999999998


Q ss_pred             cccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .....+ .+..+.+.+..+  .+++.+||+++.|++++++.|.+.+..
T Consensus       288 ~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        288 LDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            643322 334444545444  368999999999999999999887744

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.42  E-value=1.7e-12  Score=103.24  Aligned_cols=112  Identities=21%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~   84 (163)
                      ...+.|||+||+++|...+......+|++++|+|++++....+....+..+. ... ..|+++++||+|+.+....  ..
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~  156 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENY  156 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHH
Confidence            4578999999999997777777788999999999996431112222222222 111 3578999999998642211  12


Q ss_pred             HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +++..+.+..   +++++++||+++.|+++++++|...+
T Consensus       157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            3334444332   56799999999999999999887654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.42  E-value=1.4e-12  Score=107.65  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-   82 (163)
                      +.+.+++.||||||+.+|...+..+++.+|++++|+|+++.. ......|+..+...   ++|+++|+||+|+...+.. 
T Consensus        60 ~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~  135 (594)
T TIGR01394        60 RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDE  135 (594)
T ss_pred             EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHH
Confidence            445578999999999999988889999999999999998642 33445666655543   5899999999998643211 


Q ss_pred             CHHHHHHHHH-------HcCCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAE-------KEGLSFLETSALEAT----------NVEKAFQTILTEIY  121 (163)
Q Consensus        83 ~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  121 (163)
                      ..+++..+..       ...++++.+||++|.          |+..+|+.+++.+.
T Consensus       136 v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       136 VVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            1233333332       234679999999996          78888888777653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.41  E-value=4.2e-12  Score=104.66  Aligned_cols=104  Identities=21%  Similarity=0.143  Sum_probs=73.1

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---   82 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---   82 (163)
                      .+.||||||++.|..++..+++.+|++++|||+++   +.+++.+..    +..   .++|+++++||+|+......   
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~  142 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEG  142 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccC
Confidence            38899999999999999999999999999999987   444443322    111   26899999999998532100   


Q ss_pred             ---------CHHH------------HHHHHH------------Hc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           83 ---------TEED------------GHSLAE------------KE--GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        83 ---------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                               ..+.            ...+.+            .+  ..+++++||++|+|+++++.++...
T Consensus       143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                     0000            001111            11  2478999999999999999877654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04163 Era Era subfamily

Probab=99.41  E-value=3.6e-12  Score=88.14  Aligned_cols=110  Identities=18%  Similarity=0.101  Sum_probs=73.9

Q ss_pred             EEEEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            6 KTVKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ....+.+|||+|....        .......+..+|++++|+|++++.+. ....+...+...   +.|+++|+||+|+.
T Consensus        49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~  124 (168)
T cd04163          49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLV  124 (168)
T ss_pred             CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhcc
Confidence            3457889999996432        22334568899999999999986211 111222333222   57999999999986


Q ss_pred             ccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .......+....+....+ .+++++|++++.|++++++.|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            333322334444444443 589999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.40  E-value=3.7e-12  Score=97.05  Aligned_cols=110  Identities=18%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             EEEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..++.||||||....        .......+.++|++++|+|++++..- .....+..+.   ..+.|+++|+||+|+..
T Consensus        52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~  127 (292)
T PRK00089         52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVK  127 (292)
T ss_pred             CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCC
Confidence            368999999996432        22334467899999999999883211 1112222222   12589999999999863


Q ss_pred             cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ...........+.+..+ .+++++||+++.|++++++++.+.+
T Consensus       128 ~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        128 DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence            32222344555555444 4799999999999999999988775

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.40  E-value=3.4e-12  Score=101.58  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh----HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-   82 (163)
                      ..+.||||||+.+|..........+|++++|+|++++.    +.+.+.    .+... . ..|+++|+||+|+.+.... 
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~-~-i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII-G-IKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEEeeccccchhHH
Confidence            57899999999887654444455679999999999642    222222    22211 1 2478999999998643221 


Q ss_pred             -CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 -TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ..+++..+.+..   +.+++++||+++.|++++++.|...+
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence             123344444332   46799999999999999999887655

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=2e-12  Score=103.24  Aligned_cols=114  Identities=22%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-   82 (163)
                      +|..+.|+++||||+.+|.......+.-|+|+|+|+|++++.-.+.+..++.-+.    .+.-+|.|+||+|++..+.- 
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~  196 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPER  196 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHH
Confidence            4677999999999999999999999999999999999998765555544444332    35788999999999754321 


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ...+..++....+-+++.+||++|.|++++|+++++.+.
T Consensus       197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            122333333333447999999999999999999888763

>cd01895 EngA2 EngA2 subfamily

Probab=99.39  E-value=9.9e-12  Score=86.65  Aligned_cols=107  Identities=26%  Similarity=0.205  Sum_probs=70.8

Q ss_pred             EEEEEeCCChhhH----------hhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQERY----------RAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~----------~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+|||+|....          ... ....+.++|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.
T Consensus        51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~  126 (174)
T cd01895          51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLV  126 (174)
T ss_pred             eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccC
Confidence            4789999996322          111 12356789999999999987665443 22333222   258999999999986


Q ss_pred             ccccCCHHHHHH-HHHHc----CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHS-LAEKE----GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        78 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +......+...+ +.+..    ..+++++||+++.|++++++.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            543222222222 22222    3579999999999999999988753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.39  E-value=6.3e-12  Score=100.75  Aligned_cols=100  Identities=25%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             EEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+|||||...        +......++..+|++|+|+|++++.+.  ..+..|+..      .++|+++|+||+|+.
T Consensus        49 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~  122 (435)
T PRK00093         49 REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP  122 (435)
T ss_pred             cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc
Confidence            5789999999876        233345668899999999999875333  233444432      158999999999974


Q ss_pred             ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      + .   .....++ ...++ .++++||++|.|++++|+.+..
T Consensus       123 ~-~---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        123 D-E---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             c-c---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            3 1   1222222 24465 4899999999999999999887

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.36  E-value=3e-12  Score=102.34  Aligned_cols=110  Identities=21%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF-DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ++.+.+.+.||||||+++|.......++.+|++++|+|+++...+ .....++.... ... ..|+++++||+|+.+...
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~-~~~iivviNK~Dl~~~~~  156 (425)
T PRK12317         79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG-INQLIVAINKMDAVNYDE  156 (425)
T ss_pred             EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC-CCeEEEEEEccccccccH
Confidence            344567899999999988755444457889999999999872111 11122222222 222 247999999999864211


Q ss_pred             ----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238           82 ----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        82 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  114 (163)
                          ...+++..+.+..+     .+++++||++|.|+++.++
T Consensus       157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence                11234455555555     3689999999999987553

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.34  E-value=1.6e-11  Score=98.20  Aligned_cols=103  Identities=22%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             EEEEEEeCCCh--------hhHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQ--------ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~--------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+|||||.        ..+......+++.+|++++|+|++++.+..  .+..|+..      .++|+++|+||+|+.
T Consensus        47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~  120 (429)
T TIGR03594        47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGK  120 (429)
T ss_pred             eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCC
Confidence            35899999996        344555667789999999999998754332  23334332      258999999999986


Q ss_pred             ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .....    ..+ ....++ +++++||.+|.|+.++++.+.+.+.
T Consensus       121 ~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       121 KEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             ccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence            43321    122 234566 7999999999999999999887763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.34  E-value=2.7e-11  Score=86.78  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCh----------hhHhhhhhhhhcCC---cEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEee
Q 031238            8 VKAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGN   72 (163)
Q Consensus         8 ~~l~l~Dt~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~n   72 (163)
                      ..+.||||||.          +.+..+...+++.+   +++++++|.+++.....  +..|+   . .  .+.|+++++|
T Consensus        70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~-~--~~~~~iiv~n  143 (196)
T PRK00454         70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---K-E--YGIPVLIVLT  143 (196)
T ss_pred             CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---H-H--cCCcEEEEEE
Confidence            46889999993          45555556666654   67888999887543322  22232   1 1  2589999999


Q ss_pred             CCCCcccccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           73 KSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        73 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      |.|+......  ..+.+..........++++||+++.|++++++.+...+
T Consensus       144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        144 KADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            9998543221  12223334443357899999999999999999887665

>PRK10218 GTP-binding protein; Provisional

Probab=99.34  E-value=1.4e-11  Score=101.93  Aligned_cols=114  Identities=16%  Similarity=0.130  Sum_probs=79.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-   81 (163)
                      ++.+.+.+.+|||||+.+|...+..+++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+...+. 
T Consensus        63 i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~  138 (607)
T PRK10218         63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPD  138 (607)
T ss_pred             EecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchh
Confidence            345567899999999999999899999999999999999875332 23333333332   2688999999999864321 


Q ss_pred             CCHHHHHHHHHH-------cCCcEEEeccCCCC----------CHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEK-------EGLSFLETSALEAT----------NVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~-------~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~  120 (163)
                      ...+++..+...       ..++++.+||.+|.          |+..+|+.+++.+
T Consensus       139 ~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        139 WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            112333333211       24679999999998          4677777666555

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.34  E-value=1.1e-11  Score=90.18  Aligned_cols=103  Identities=28%  Similarity=0.192  Sum_probs=67.3

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC----
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV----   82 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~----   82 (163)
                      ..++.||||||++++.......++.+|++|+|+|++++..-. .......+... . ..++|+|+||+|+......    
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~  152 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEE  152 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHH
Confidence            346789999999988665666789999999999998753211 11112222211 1 2457889999998542111    


Q ss_pred             CHHHHHHHHHHcCC---cEEEeccCCCCCHHHH
Q 031238           83 TEEDGHSLAEKEGL---SFLETSALEATNVEKA  112 (163)
Q Consensus        83 ~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~  112 (163)
                      ...+...+.+..++   +++++||+++.|+++.
T Consensus       153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            12234445555564   4899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.33  E-value=6.4e-12  Score=92.07  Aligned_cols=104  Identities=20%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .....+.||||||+..+.......++.+|++|+|+|++++..   +   ......+......  ...|+++++||+|+..
T Consensus        74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~  151 (219)
T cd01883          74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVT  151 (219)
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEcccccc
Confidence            345678999999998876666666788999999999987421   1   1122222222211  2368999999999862


Q ss_pred             c--ccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 031238           79 L--RAVT----EEDGHSLAEKEG-----LSFLETSALEATNVE  110 (163)
Q Consensus        79 ~--~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  110 (163)
                      .  ....    .+++..+....+     .+++++||++|.|++
T Consensus       152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1  0000    122222334433     469999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.33  E-value=9.7e-11  Score=99.07  Aligned_cols=108  Identities=16%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             EEEEEeCCChh----------hHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQE----------RYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.||||+|..          .+..+. ...++.+|++++|+|++++.+..... ++..+..   .++|+++|+||+|+.
T Consensus       499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~  574 (712)
T PRK09518        499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLM  574 (712)
T ss_pred             EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcC
Confidence            46699999953          232222 24478999999999999887766654 3333332   368999999999985


Q ss_pred             ccccCCHHHHHHHH-HHc----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLA-EKE----GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +...  .+...... ...    ..+++++||++|.|++++|+.+.+.+..
T Consensus       575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4221  11222222 111    2367999999999999999999887765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.31  E-value=2.7e-11  Score=102.39  Aligned_cols=106  Identities=23%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             EEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|.+.        +......+++.+|++|+|+|++++....+ ..|...+..   .++|+++|+||+|+...
T Consensus       323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS  398 (712)
T ss_pred             EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc
Confidence            4688999999753        33444567899999999999986422111 133333332   36899999999998532


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .    .....+. ..++ ..+++||++|.|++++|+++++.+..
T Consensus       399 ~----~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        399 E----YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             h----hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            1    1112221 2343 46899999999999999999987743

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.30  E-value=4.2e-11  Score=99.47  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=73.2

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC--
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV--   82 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~--   82 (163)
                      .+.||||||+++|.......+.++|++++|+|++.+   ++.+.+    ..+. ..  ++| ++||+||+|+.+....  
T Consensus        52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~-~l--gi~~iIVVlNKiDlv~~~~~~~  124 (614)
T PRK10512         52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQ-LT--GNPMLTVALTKADRVDEARIAE  124 (614)
T ss_pred             EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHH-Hc--CCCeEEEEEECCccCCHHHHHH
Confidence            478999999999866555668899999999999873   233222    2222 21  345 6799999998642221  


Q ss_pred             CHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+++..+....+   .+++++||++|.|++++++.|....
T Consensus       125 v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        125 VRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            1234444554444   5799999999999999999887543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.29  E-value=1.5e-11  Score=85.20  Aligned_cols=102  Identities=19%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             EEEEEEeCCChhh------Hhhhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQER------YRAITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~------~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.|+|+||--.      .......++  ...|++|+|+|+++.+   .-..+..++.+.   ++|+++++||+|....
T Consensus        47 ~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~  120 (156)
T PF02421_consen   47 QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAER  120 (156)
T ss_dssp             EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHH
T ss_pred             ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHH
Confidence            4688999999422      123334443  5899999999998743   223334444433   6999999999998654


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI  116 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  116 (163)
                      +.+.. ....+.+..+++++.+||++++|++++++.|
T Consensus       121 ~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  121 KGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             TTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             cCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            44322 2455777789999999999999999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.29  E-value=3.7e-11  Score=96.32  Aligned_cols=110  Identities=27%  Similarity=0.240  Sum_probs=72.8

Q ss_pred             EEEEEEeCCChhh----------Hhhh-hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQER----------YRAI-TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~----------~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      ..+.+|||||..+          +... ...+++.+|++|+|+|++++.+..+. .+...+..   .++|+++++||+|+
T Consensus       221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl  296 (435)
T PRK00093        221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDL  296 (435)
T ss_pred             eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccC
Confidence            4578999999532          2211 12367899999999999987665443 23333322   25899999999998


Q ss_pred             cccccCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEK----EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+... ..+....+...    ..++++++||+++.|++++|+.+.+....
T Consensus       297 ~~~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        297 VDEKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             CCHHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            63221 11111112222    24689999999999999999998876543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.28  E-value=7.7e-11  Score=97.41  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=72.0

Q ss_pred             EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--C-
Q 031238           10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--T-   83 (163)
Q Consensus        10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~-   83 (163)
                      +.||||||++.|..++...++.+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+......  . 
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~  145 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDA  145 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCc
Confidence            6899999999999888888899999999999997   455544432    221   26899999999998421110  0 


Q ss_pred             -------------HH-------HHHHHHHHc---------------CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           84 -------------EE-------DGHSLAEKE---------------GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        84 -------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                                   .+       +........               .++++++||.+|+|++++++.+...
T Consensus       146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence                         00       000111111               2468999999999999999887643

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.28  E-value=2.8e-11  Score=85.89  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=63.9

Q ss_pred             EEEEEeCCCh----------hhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            9 KAQIWDTAGQ----------ERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         9 ~l~l~Dt~G~----------~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .+.+|||||.          ..+..+...+++.   ++++++|+|++++.+..+. .++..+..   .++|+++++||+|
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D  140 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD  140 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence            4789999994          3344445556654   5899999999876444333 22233322   2689999999999


Q ss_pred             CcccccC--CHHHHHHHHHHcC--CcEEEeccCCCCCHH
Q 031238           76 LNHLRAV--TEEDGHSLAEKEG--LSFLETSALEATNVE  110 (163)
Q Consensus        76 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  110 (163)
                      +....+.  ..+++++.....+  ..++++||++|+|++
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            8542221  2334444444443  479999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd00066 G-alpha G protein alpha subunit

Probab=99.27  E-value=5.5e-11  Score=91.68  Aligned_cols=122  Identities=17%  Similarity=0.190  Sum_probs=90.2

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~   71 (163)
                      ++.+.+.+.+||++|++..+..|..++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++
T Consensus       156 f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~  235 (317)
T cd00066         156 FTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL  235 (317)
T ss_pred             EEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence            344567899999999999999999999999999999999874          456666666666665433 579999999


Q ss_pred             eCCCCccc---------------c-cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHL---------------R-AVTEEDGHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        72 nK~Dl~~~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ||.|+...               . ....+.+..+...          ..+.++.++|.+..++..+|+.+.+.++...
T Consensus       236 NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         236 NKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             cChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            99996211               1 2233344333322          2345678899999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.27  E-value=6.5e-11  Score=100.40  Aligned_cols=110  Identities=16%  Similarity=0.130  Sum_probs=81.3

Q ss_pred             cCEEEEEEEEeCCChhhHhh----------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            4 EGKTVKAQIWDTAGQERYRA----------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      +.....+.+|||||...+..          ..+.++  ..+|++++|+|+++.+.   ...|..++.+.   ++|+++++
T Consensus        46 ~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVl  119 (772)
T PRK09554         46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVAL  119 (772)
T ss_pred             EcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEE
Confidence            44556789999999876532          122333  47999999999998543   23344444433   68999999


Q ss_pred             eCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           72 NKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        72 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ||+|+.+++.+ ....+.+.+..+++++++||.+++|++++.+.+.+..
T Consensus       120 NK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        120 NMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            99998655554 3456677888899999999999999999998887654

>cd04167 Snu114p Snu114p subfamily

Probab=99.26  E-value=5.1e-11  Score=86.89  Aligned_cols=70  Identities=27%  Similarity=0.284  Sum_probs=54.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +++.+.+.+|||||+.++......++..+|++|+|+|+++..+... ..++.....   .++|+++|+||+|+.
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            3567899999999999988778888999999999999987655432 334343322   258999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.25  E-value=1.2e-10  Score=86.33  Aligned_cols=70  Identities=24%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.+..++.+|||||+.+|...+..+++.+|++++|+|+++.... ....++..+...   ++|+++++||+|+.
T Consensus        60 ~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          60 QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            34456889999999999988888899999999999999986443 334555544432   68999999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.24  E-value=7.7e-11  Score=85.43  Aligned_cols=73  Identities=22%  Similarity=0.341  Sum_probs=58.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCC-cEEEEEEECCCh-hHHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGA-VGALLVYDITKR-QTFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~   78 (163)
                      ....+.+||+||+.+++..+..+++++ +++|||+|+++. .++.++..|+..+...   ...++|+++++||+|+..
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            346789999999999998888899999 999999999987 6777766665554332   124799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.23  E-value=2e-10  Score=99.50  Aligned_cols=102  Identities=22%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC---
Q 031238           10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT---   83 (163)
Q Consensus        10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~---   83 (163)
                      +.||||||++.|..++...+..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+.......   
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence            7999999999998888778889999999999987   34443332    2222   258999999999985322110   


Q ss_pred             ----------HHHHHHH----------HHH-------------c--CCcEEEeccCCCCCHHHHHHHHHH
Q 031238           84 ----------EEDGHSL----------AEK-------------E--GLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        84 ----------~~~~~~~----------~~~-------------~--~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                                .....++          ...             +  .++++++||++|+|+++++..+..
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                      0001111          011             1  247899999999999999987654

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.23  E-value=3e-10  Score=83.55  Aligned_cols=107  Identities=17%  Similarity=0.087  Sum_probs=68.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-   83 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-   83 (163)
                      ...+.|.||||+++|.......+.  .+|++++|+|++.+..- ....++..+..   .++|+++|+||+|+.+..... 
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~  158 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLAPANILQE  158 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECccccCHHHHHH
Confidence            346889999999988554333343  68999999999865331 12233333332   258999999999985422211 


Q ss_pred             -HHHHHHHHHH--------------------------cCCcEEEeccCCCCCHHHHHHHHH
Q 031238           84 -EEDGHSLAEK--------------------------EGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        84 -~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                       .++..++...                          ...++|.+||.+|+|++++...|.
T Consensus       159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence             1222222221                          013789999999999999887653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>smart00275 G_alpha G protein alpha subunit

Probab=99.22  E-value=3.5e-10  Score=88.06  Aligned_cols=121  Identities=15%  Similarity=0.164  Sum_probs=88.4

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNK   73 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK   73 (163)
                      ...+.+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....+..+..... .+.|+++++||
T Consensus       181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK  260 (342)
T smart00275      181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK  260 (342)
T ss_pred             ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence            3456789999999999999999999999999999999863          346666666777665432 57999999999


Q ss_pred             CCCccc---------------ccCCHHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           74 SDLNHL---------------RAVTEEDGHSLAEK-----------EGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        74 ~Dl~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      .|+...               .....+.+..+...           ..+.++.++|.+..++..+|+.+.+.+.....
T Consensus       261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l  338 (342)
T smart00275      261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL  338 (342)
T ss_pred             HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence            997311               11123333333221           12456788999999999999999888877553

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.21  E-value=3.8e-10  Score=81.34  Aligned_cols=103  Identities=22%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~   82 (163)
                      +.+..++.|.||||+..+.......+..+|++++|+|++.+..- .....+..+...   ++| +|+++||+|+......
T Consensus        61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~  136 (195)
T cd01884          61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKADMVDDEEL  136 (195)
T ss_pred             cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHH
Confidence            34455788999999988877666778899999999999865321 222333333322   466 7899999998532221


Q ss_pred             ---CHHHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 031238           83 ---TEEDGHSLAEKEG-----LSFLETSALEATNVE  110 (163)
Q Consensus        83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  110 (163)
                         ..+++..+....+     ++++++||.+|.|+.
T Consensus       137 ~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         137 LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence               1233444544444     579999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1159 Era GTPase [General function prediction only]

Probab=99.20  E-value=2.1e-10  Score=86.06  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=77.4

Q ss_pred             cCEEEEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            4 EGKTVKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      ..+..++.|.||||...        +.......++++|+++||+|++.+- ..+  ...++.+..   .+.|+++++||.
T Consensus        50 t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~---~~~pvil~iNKI  124 (298)
T COG1159          50 TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK---TKTPVILVVNKI  124 (298)
T ss_pred             EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---cCCCeEEEEEcc
Confidence            34577899999999643        3334456688999999999998742 221  122333332   257999999999


Q ss_pred             CCcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      |............+.+.....+ .++++||++|.|++.+.+.+...+.
T Consensus       125 D~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp  172 (298)
T COG1159         125 DKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLP  172 (298)
T ss_pred             ccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence            9765443213334444444444 7999999999999999998877664

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=3.7e-10  Score=90.35  Aligned_cols=103  Identities=21%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      -.+.|.||||++.|..++..=.+=+|++|+|+++++.   ++.+.+    +..+   ..+.|++|..||+|.++..   .
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI----~hak---~a~vP~iVAiNKiDk~~~n---p  124 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI----NHAK---AAGVPIVVAINKIDKPEAN---P  124 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH----HHHH---HCCCCEEEEEecccCCCCC---H
Confidence            3678999999999999887777788999999999984   444333    2222   2379999999999986422   2


Q ss_pred             HHHHHHHHHcCC---------cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGL---------SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .....-..++|+         .++++||++|+|+.+++..++-..
T Consensus       125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            222222223333         589999999999999998877544

>PRK12736 elongation factor Tu; Reviewed

Probab=99.18  E-value=3.8e-10  Score=89.49  Aligned_cols=99  Identities=19%  Similarity=0.124  Sum_probs=64.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~   83 (163)
                      .....+.||||||+++|......-+..+|++++|+|++.+..- ....++..+...   ++| +|+++||+|+.+.....
T Consensus        72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~  147 (394)
T PRK12736         72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYLVVFLNKVDLVDDEELL  147 (394)
T ss_pred             CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHH
Confidence            3445778999999988865555556789999999999864221 122223333322   467 67899999986432221


Q ss_pred             ---HHHHHHHHHHcC-----CcEEEeccCCCC
Q 031238           84 ---EEDGHSLAEKEG-----LSFLETSALEAT  107 (163)
Q Consensus        84 ---~~~~~~~~~~~~-----~~~~~~Sa~~~~  107 (163)
                         .+++..+.+..+     .+++++||.++.
T Consensus       148 ~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T PRK12736        148 ELVEMEVRELLSEYDFPGDDIPVIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence               224445555454     479999999984

>cd01855 YqeH YqeH

Probab=99.17  E-value=3.7e-10  Score=80.90  Aligned_cols=94  Identities=20%  Similarity=0.088  Sum_probs=65.3

Q ss_pred             hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHH-----HHc
Q 031238           20 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLA-----EKE   94 (163)
Q Consensus        20 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~   94 (163)
                      .+..++..+++++|++++|+|++++..-     |...+.... .++|+++|+||+|+... .........+.     +..
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhc
Confidence            3577788899999999999999875311     111121112 35899999999998643 22333343333     233


Q ss_pred             CC---cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           95 GL---SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        95 ~~---~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ++   .++++||+++.|++++++.+.+.+
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            33   689999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.16  E-value=1e-09  Score=81.25  Aligned_cols=49  Identities=24%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +|+++|+||+|+.     ..++...+++.  ..++++||+++.|++++|+.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            6899999999984     34444445443  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.15  E-value=3.4e-10  Score=83.10  Aligned_cols=69  Identities=22%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++.+.+.||||||+.+|.......++.+|++++|+|++.+..... ...+.....   .++|+++++||+|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            557899999999999998888899999999999999998755443 222222222   257999999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.14  E-value=6.7e-10  Score=88.13  Aligned_cols=101  Identities=19%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~~~   81 (163)
                      ++....++.||||||+++|......-...+|++++|+|++.+.... ....+..+...   ++|. |+++||+|+.+...
T Consensus        70 ~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~  145 (394)
T TIGR00485        70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEE  145 (394)
T ss_pred             EcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHH
Confidence            3444567899999999988654445567889999999998742221 12222333222   4665 56899999864322


Q ss_pred             CC---HHHHHHHHHHcC-----CcEEEeccCCCC
Q 031238           82 VT---EEDGHSLAEKEG-----LSFLETSALEAT  107 (163)
Q Consensus        82 ~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~  107 (163)
                      ..   .++++.+.+..+     ++++++||.++.
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            11   234555666554     579999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.13  E-value=9.4e-10  Score=76.12  Aligned_cols=105  Identities=19%  Similarity=0.245  Sum_probs=67.6

Q ss_pred             EEEEEeCCCh----------hhHhhhhhhhhc---CCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            9 KAQIWDTAGQ----------ERYRAITSAYYR---GAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G~----------~~~~~~~~~~~~---~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.+|||+|.          +.+......++.   +.+++++++|.+...+  ...+..|+...      +.|+++++||
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK  119 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTK  119 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEc
Confidence            6789999994          234444445554   4578999999986522  22333444332      4799999999


Q ss_pred             CCCcccccC--CHHHHHHHHH--HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           74 SDLNHLRAV--TEEDGHSLAE--KEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        74 ~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +|+......  .........+  ....+++++||+++.|+.++++.+.+.
T Consensus       120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            998432211  1122222222  234578999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.13  E-value=9.7e-10  Score=89.92  Aligned_cols=71  Identities=21%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++.+.+.+.+|||||+.+|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+.
T Consensus        74 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         74 FPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             EEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            344567899999999999887777789999999999999875322 23344433322   368999999999974

>cd01859 MJ1464 MJ1464

Probab=99.13  E-value=2.9e-10  Score=78.93  Aligned_cols=95  Identities=19%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEE
Q 031238           21 YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLE  100 (163)
Q Consensus        21 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  100 (163)
                      ++.+.++.++++|++|+|+|++++....+ ..+...+.   ..++|+++|+||+|+......  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            35667888899999999999987543221 12222221   125899999999998532111  1111233445678999


Q ss_pred             eccCCCCCHHHHHHHHHHHHH
Q 031238          101 TSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus       101 ~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +||+++.|++++++.+.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.11  E-value=9.1e-10  Score=88.60  Aligned_cols=110  Identities=17%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEED   86 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~   86 (163)
                      .+.|+|+||++.|-.....-+..+|++++|+|++.+.........+..+. ... -.++|+++||+|+.+....  ..++
T Consensus       118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lg-i~~iIVvlNKiDlv~~~~~~~~~~e  195 (460)
T PTZ00327        118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMK-LKHIIILQNKIDLVKEAQAQDQYEE  195 (460)
T ss_pred             eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcC-CCcEEEEEecccccCHHHHHHHHHH
Confidence            67899999999886655555788999999999986411112222222221 122 2468999999998642211  1223


Q ss_pred             HHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           87 GHSLAEK---EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        87 ~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..+.+.   .+.+++++||++|.|++.+++.|.+.+
T Consensus       196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            3333332   246899999999999999988877644

>cd04169 RF3 RF3 subfamily

Probab=99.10  E-value=1e-09  Score=82.73  Aligned_cols=72  Identities=22%  Similarity=0.178  Sum_probs=54.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ++.+.+++.||||||+.+|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        66 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          66 FEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             EeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            455678899999999998887677788999999999999875332 22334333322   3689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK09866 hypothetical protein; Provisional

Probab=99.10  E-value=1.8e-09  Score=88.84  Aligned_cols=109  Identities=13%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             EEEEEEeCCChhh-----HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            8 VKAQIWDTAGQER-----YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .++.|.||||...     ........+..+|+|+||+|++...+..+ ......+.+. +...|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccc
Confidence            4678999999753     22233457999999999999987533222 1223333332 213599999999998532322


Q ss_pred             CHHHHHHHHHH----cCC---cEEEeccCCCCCHHHHHHHHHH
Q 031238           83 TEEDGHSLAEK----EGL---SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        83 ~~~~~~~~~~~----~~~---~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ..+....+.+.    .++   .++++||++|.|++++++.+..
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            24455444331    122   6999999999999999998876

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.10  E-value=7.1e-10  Score=89.14  Aligned_cols=103  Identities=18%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHH-------HHHHHHHHHHhhcCCCC-eEEEEeeCCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD-------NVLRWLRELRDHADSNI-VIMMAGNKSD   75 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-piivv~nK~D   75 (163)
                      ......+.|+|+||+++|-......+..+|++|+|+|+++. +|+       .....+.....   .++ ++|+++||+|
T Consensus        81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD  156 (447)
T PLN00043         81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMD  156 (447)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEccc
Confidence            44566889999999999987777888999999999999873 221       23332222221   245 5788999999


Q ss_pred             CcccccC-------CHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 031238           76 LNHLRAV-------TEEDGHSLAEKEG-----LSFLETSALEATNVEK  111 (163)
Q Consensus        76 l~~~~~~-------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  111 (163)
                      +.. ...       ..++++.++++.+     ++++++||.+|+|+.+
T Consensus       157 ~~~-~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        157 ATT-PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CCc-hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            752 111       1345666666666     4699999999999854

>PRK12289 GTPase RsgA; Reviewed

Probab=99.08  E-value=6e-10  Score=86.85  Aligned_cols=94  Identities=16%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEE
Q 031238           21 YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL   99 (163)
Q Consensus        21 ~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~   99 (163)
                      .+.+.+..++++|++++|+|++++. +...+..|+.....   .++|+++|+||+||......  .........+++.++
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~  153 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL  153 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence            3445566799999999999998765 34455666655422   36899999999999532211  222233346688999


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 031238          100 ETSALEATNVEKAFQTILTE  119 (163)
Q Consensus       100 ~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .+||.++.|++++++.+...
T Consensus       154 ~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccc
Confidence            99999999999999988653

>PRK12735 elongation factor Tu; Reviewed

Probab=99.08  E-value=1.5e-09  Score=86.20  Aligned_cols=100  Identities=18%  Similarity=0.113  Sum_probs=64.6

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcccccC-
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV-   82 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~-   82 (163)
                      ....++.|+||||+++|......-+..+|++++|+|++....- ....++..+..   .++|.+ +++||+|+.+.... 
T Consensus        72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~  147 (396)
T PRK12735         72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELL  147 (396)
T ss_pred             CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHH
Confidence            3445789999999988866555667889999999999874321 22233333322   257755 68999998642221 


Q ss_pred             --CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238           83 --TEEDGHSLAEKEG-----LSFLETSALEATN  108 (163)
Q Consensus        83 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  108 (163)
                        ..+++..+.+..+     ++++++||.++.|
T Consensus       148 ~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (396)
T PRK12735        148 ELVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence              1224445555443     5789999999853

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.08  E-value=1.2e-09  Score=74.34  Aligned_cols=98  Identities=20%  Similarity=0.222  Sum_probs=70.2

Q ss_pred             EEEeCCCh----hhHhhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238           11 QIWDTAGQ----ERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus        11 ~l~Dt~G~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .++||||.    ..+....-....+||.|++|.|++++.+ |..      .+...  -..|+|-|+||.|+.. .+...+
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~-~~~~i~  109 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS-DDANIE  109 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc-chhhHH
Confidence            57999994    3333333445668999999999998643 211      11111  2579999999999963 233456


Q ss_pred             HHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHH
Q 031238           86 DGHSLAEKEGL-SFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        86 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      ..+.+.+..|+ ++|++|+.+|+|++++.+.|-
T Consensus       110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            66777777787 689999999999999988763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK13351 elongation factor G; Reviewed

Probab=99.04  E-value=3.2e-09  Score=89.72  Aligned_cols=69  Identities=20%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ....++.||||||+.++...+..+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+.
T Consensus        70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~  138 (687)
T PRK13351         70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV  138 (687)
T ss_pred             ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence            3456889999999999988888999999999999999987665544333 33332   268999999999984

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.02  E-value=2.8e-09  Score=84.91  Aligned_cols=104  Identities=26%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--   83 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--   83 (163)
                      ...++.||||||+++|......-+..+|++++|+|++.+..-. ....+..+... + ..++++++||+|+.+.....  
T Consensus        78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~  154 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFE  154 (406)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHc-C-CCcEEEEEEecccccchHHHHH
Confidence            3457889999999988655556688999999999998653211 11111212211 2 24689999999985422111  


Q ss_pred             --HHHHHHHHHHcCC---cEEEeccCCCCCHHHH
Q 031238           84 --EEDGHSLAEKEGL---SFLETSALEATNVEKA  112 (163)
Q Consensus        84 --~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~  112 (163)
                        .++...+.+..++   +++++||.+|+|+++.
T Consensus       155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence              1222333344443   6999999999998863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.01  E-value=6.9e-10  Score=89.47  Aligned_cols=118  Identities=25%  Similarity=0.299  Sum_probs=91.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcC--CCCeEEEEeeCCCCcccccC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD--SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~   82 (163)
                      ..+...+.|++....-+......++.+|++.++|+++++.+++.+. .|+..+++..+  ...|||+||||.|..+....
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            3445788999866555555677799999999999999999999985 89999988764  47999999999998665544


Q ss_pred             CHHH-HHHHHHHc-CC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           83 TEED-GHSLAEKE-GL-SFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        83 ~~~~-~~~~~~~~-~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+. +..+...+ .+ .+++|||++..++.++|+.....+...
T Consensus       134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence            3333 44444443 23 589999999999999999877666543

>PRK00098 GTPase RsgA; Reviewed

Probab=99.01  E-value=9.9e-10  Score=84.09  Aligned_cols=85  Identities=20%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             hcCCcEEEEEEECCChhHHHH-HHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCC
Q 031238           29 YRGAVGALLVYDITKRQTFDN-VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT  107 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  107 (163)
                      .+++|++++|+|++++.+... +..|+..+..   .++|+++|+||+|+.+.... ........+..+++++++||+++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCc
Confidence            389999999999988765444 4566665543   36899999999998532221 222334455668899999999999


Q ss_pred             CHHHHHHHHH
Q 031238          108 NVEKAFQTIL  117 (163)
Q Consensus       108 ~i~~~~~~l~  117 (163)
                      |++++++.+.
T Consensus       154 gi~~L~~~l~  163 (298)
T PRK00098        154 GLDELKPLLA  163 (298)
T ss_pred             cHHHHHhhcc
Confidence            9999998775

>PRK13768 GTPase; Provisional

Probab=99.00  E-value=3.8e-09  Score=79.10  Aligned_cols=111  Identities=17%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             EEEEEeCCChhhH---hhhhhhh---hcC--CcEEEEEEECCChhHHHHH--HHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            9 KAQIWDTAGQERY---RAITSAY---YRG--AVGALLVYDITKRQTFDNV--LRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         9 ~l~l~Dt~G~~~~---~~~~~~~---~~~--~d~ii~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+||+||+.+.   +..+..+   +.+  ++++++++|+.......+.  ..|+....... .++|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence            5789999998663   3333323   223  8999999999654322221  22222222111 3689999999999864


Q ss_pred             cccCCH--HHHH------------------------HHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTE--EDGH------------------------SLAEKEG--LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+...  ....                        +..+..+  .+++++|+++++|++++++++.+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            322210  0001                        1122333  4789999999999999999987765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.00  E-value=1.8e-09  Score=82.24  Aligned_cols=86  Identities=16%  Similarity=0.062  Sum_probs=65.6

Q ss_pred             hhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCC
Q 031238           28 YYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA  106 (163)
Q Consensus        28 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  106 (163)
                      .++++|++++|+|++++. ++..+..|+..+...   ++|+++|+||+||.....  ......+....+++++.+||+++
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence            388999999999999887 777777787765432   589999999999954311  11223334456889999999999


Q ss_pred             CCHHHHHHHHHH
Q 031238          107 TNVEKAFQTILT  118 (163)
Q Consensus       107 ~~i~~~~~~l~~  118 (163)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.98  E-value=2.3e-09  Score=86.89  Aligned_cols=105  Identities=26%  Similarity=0.131  Sum_probs=66.2

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ....++.||||||+.+|......-+..+|++++|+|++.+..-.....+ ..+... + ..|+|+++||+|+.+......
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL-G-IKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence            3445789999999988865444557999999999999865321111111 111111 1 247899999999864222111


Q ss_pred             H----HHHHHHHHcC----CcEEEeccCCCCCHHHH
Q 031238           85 E----DGHSLAEKEG----LSFLETSALEATNVEKA  112 (163)
Q Consensus        85 ~----~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  112 (163)
                      +    +...+.+..+    .+++++||++|.|+.++
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            2    2222333333    57999999999999865

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.98  E-value=1.1e-08  Score=80.72  Aligned_cols=101  Identities=20%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             EEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.++||+|.+...         ......+..||++|||+|...+.+  .+.+..|+.    .  .++|+++|+||+|-.
T Consensus        52 ~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kpviLvvNK~D~~  125 (444)
T COG1160          52 EFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKPVILVVNKIDNL  125 (444)
T ss_pred             eEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCCEEEEEEcccCc
Confidence            48899999976322         233455778999999999987433  223334433    1  258999999999964


Q ss_pred             ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +    ..+...++. ..|+ +++.+||.+|.|+.+++++++..+
T Consensus       126 ~----~e~~~~efy-slG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         126 K----AEELAYEFY-SLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             h----hhhhHHHHH-hcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            2    122223332 3465 799999999999999999999987

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.97  E-value=5.3e-09  Score=82.08  Aligned_cols=95  Identities=18%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH----HHHHH
Q 031238           18 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH----SLAEK   93 (163)
Q Consensus        18 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~   93 (163)
                      .++|..+...++..++++++|+|+.+..     ..|...+.+... +.|+++|+||+|+.. +....+...    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            4567788888889999999999997643     223334433333 579999999999864 333334433    34566


Q ss_pred             cCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238           94 EGL---SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        94 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      .++   .++.+||+++.|++++|+.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.8e-08  Score=81.17  Aligned_cols=106  Identities=23%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      -.+.|.||||+..|..|+..=-+-+|++|+|+.++|+   ++.+.+       ......++|+||.+||+|.++...  .
T Consensus       201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI-------khAk~A~VpiVvAinKiDkp~a~p--e  271 (683)
T KOG1145|consen  201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI-------KHAKSANVPIVVAINKIDKPGANP--E  271 (683)
T ss_pred             CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH-------HHHHhcCCCEEEEEeccCCCCCCH--H
Confidence            4678999999999999988777788999999999885   333322       222234799999999999754221  2


Q ss_pred             HHHHHHH------HHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLA------EKEG--LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~------~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...+++.      +.+|  .+++++||++|.|++.+-+.++-+..-
T Consensus       272 kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~  317 (683)
T KOG1145|consen  272 KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV  317 (683)
T ss_pred             HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence            2233332      2333  368999999999999998888765443

>COG2262 HflX GTPases [General function prediction only]

Probab=98.96  E-value=1.9e-08  Score=78.53  Aligned_cols=109  Identities=18%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .+.+-||.|.-+         |.+..+. ...+|++++|+|++++...+.+..-..-+....-..+|+|+|.||.|+...
T Consensus       241 ~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~  319 (411)
T COG2262         241 KVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED  319 (411)
T ss_pred             eEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence            567889999632         4444433 668999999999999966555554444444443356999999999997532


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..    ....+....+ ..+.+||+++.|++.+++.|.+.+...
T Consensus       320 ~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         320 EE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             hh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            22    1111112222 589999999999999999988887643

>PRK12740 elongation factor G; Reviewed

Probab=98.94  E-value=1.3e-08  Score=85.82  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+.||||||+.++...+...++.+|++++|+|++........ .++..+..   .++|+++|+||+|+.
T Consensus        58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            456899999999998877778889999999999999886554433 22333332   268999999999974

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.94  E-value=7.4e-09  Score=81.98  Aligned_cols=108  Identities=18%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             CEEEEEEEEeCCChhhHhhh--------hhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            5 GKTVKAQIWDTAGQERYRAI--------TSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      -..+.+.+.||+|.++-...        ....++.||.+++|+|.+.+.+ .+....+      ....++|+++|.||.|
T Consensus       262 i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~D  335 (454)
T COG0486         262 LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKAD  335 (454)
T ss_pred             ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechh
Confidence            34566889999998653322        2345889999999999998522 2221121      1234689999999999


Q ss_pred             CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +........     ..-..+.+++.+|+++++|++.+.+.|.+.+...
T Consensus       336 L~~~~~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         336 LVSKIELES-----EKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cccccccch-----hhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            965333211     1111244789999999999999999998887765

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=1.9e-08  Score=79.46  Aligned_cols=111  Identities=26%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             EEEEEeCCChhhHhhh-----------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQERYRAI-----------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+.||+|.++-...           ....+..+|++++|+|++.+-+-.+. .....+.+   .+.++++|+||+|+.
T Consensus       227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~  302 (444)
T COG1160         227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLV  302 (444)
T ss_pred             EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccC
Confidence            4678999997653221           22447789999999999987554332 22222222   368999999999987


Q ss_pred             ccccCCHHHHHHHH-HHcC----CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLA-EKEG----LSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +......++.+... +.+.    .+.+++||+++.+++.+|+.+.......
T Consensus       303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            65444444443332 2222    3789999999999999999888655443

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=9.2e-09  Score=80.20  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-CHHHHHHHHHHcCCcEEEeccCCCC
Q 031238           29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-TEEDGHSLAEKEGLSFLETSALEAT  107 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  107 (163)
                      .+++|.+++|++++...++..+..|+..+..   .++|+++|+||+|+...... ............+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999877788888888765432   35899999999999542211 1122223334568899999999999


Q ss_pred             CHHHHHHHHHH
Q 031238          108 NVEKAFQTILT  118 (163)
Q Consensus       108 ~i~~~~~~l~~  118 (163)
                      |++++++.+..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999998865

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.91  E-value=1.2e-08  Score=77.15  Aligned_cols=107  Identities=17%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             EEEEEeCCChhhHhh----hh---hhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYRA----IT---SAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~----~~---~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl   76 (163)
                      ++.+=|.||..+--.    +.   -..+.+|++++||+|++.+   +.++.+..++.++..+.+  .+.|.++|+||+|+
T Consensus       245 q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~  324 (366)
T KOG1489|consen  245 QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL  324 (366)
T ss_pred             eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence            378889999643211    11   1346789999999999988   888888888888877655  57899999999998


Q ss_pred             cccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ++..   .+...++++... -+++++||++++|+.++++.+.+
T Consensus       325 ~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  325 PEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hhHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            5311   222355555543 35999999999999999887765

>CHL00071 tufA elongation factor Tu

Probab=98.90  E-value=1.7e-08  Score=80.53  Aligned_cols=101  Identities=18%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC-
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~-   82 (163)
                      .+..++.|.||||+.+|.......+..+|++++|+|++.+.. ......+..+...   ++| +|+++||+|+.+.... 
T Consensus        72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~  147 (409)
T CHL00071         72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELL  147 (409)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHH
Confidence            344567899999998886665666889999999999986432 1222333333222   567 7789999998643221 


Q ss_pred             --CHHHHHHHHHHcC-----CcEEEeccCCCCCH
Q 031238           83 --TEEDGHSLAEKEG-----LSFLETSALEATNV  109 (163)
Q Consensus        83 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i  109 (163)
                        ..+++..+.+..+     ++++++||.+|.|+
T Consensus       148 ~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        148 ELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence              1224444544443     57899999998754

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.89  E-value=7.6e-09  Score=78.15  Aligned_cols=69  Identities=22%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ...++.||||||+.++...+...++.+|++|+|+|+.+...-. ...++..+..   .++|+++++||+|+.+
T Consensus        62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            3467899999999988888888999999999999998753221 2233333332   2589999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.89  E-value=1.5e-08  Score=84.85  Aligned_cols=102  Identities=26%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH--
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE--   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~--   84 (163)
                      ..++.|+||||+++|.......+..+|++++|+|++.+..- .....+..+... + ..+++|++||+|+.+......  
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL-G-IRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh-C-CCeEEEEEEecccccchhHHHHH
Confidence            34678999999998865445568899999999999765321 111111222222 1 357899999999853111111  


Q ss_pred             --HHHHHHHHHcCC---cEEEeccCCCCCHHH
Q 031238           85 --EDGHSLAEKEGL---SFLETSALEATNVEK  111 (163)
Q Consensus        85 --~~~~~~~~~~~~---~~~~~Sa~~~~~i~~  111 (163)
                        .++..+.+..++   +++++||++|.|+++
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              222333345454   589999999999875

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.87  E-value=1.9e-08  Score=81.04  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=68.0

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIV-IMMAGNKSDL   76 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl   76 (163)
                      +.....+.|+||||+.+|-.....-+..+|++++|+|++.+..   +   ......+..+...   ++| +|+++||+|.
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~  157 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDD  157 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccc
Confidence            4455688999999999987766677889999999999986521   1   1222222222222   455 7899999995


Q ss_pred             cc--ccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 031238           77 NH--LRA----VTEEDGHSLAEKEG-----LSFLETSALEATNVEK  111 (163)
Q Consensus        77 ~~--~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  111 (163)
                      ..  -.+    ...+++..+....+     ++++++|+.+|.|+.+
T Consensus       158 ~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        158 KTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            21  111    11233344444333     4689999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=98.87  E-value=4.7e-08  Score=77.69  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcccccC--
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNHLRAV--   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~--   82 (163)
                      +..++.|.||||+.+|.......+..+|++++|+|++.+..- ....++..+...   ++|.+ +++||+|+.+....  
T Consensus        73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~  148 (396)
T PRK00049         73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLE  148 (396)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHH
Confidence            445788999999988866666668899999999999875321 222333333322   57865 68999998642221  


Q ss_pred             -CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238           83 -TEEDGHSLAEKEG-----LSFLETSALEATN  108 (163)
Q Consensus        83 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  108 (163)
                       ...++..+....+     ++++.+||.++.+
T Consensus       149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~  180 (396)
T PRK00049        149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALE  180 (396)
T ss_pred             HHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence             1123334444333     5789999998753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.86  E-value=2.1e-08  Score=73.91  Aligned_cols=113  Identities=19%  Similarity=0.304  Sum_probs=71.5

Q ss_pred             EEEEEEEeCCChhhHh-----hhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYR-----AITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~-----~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+++||.||+..+.     ......+++++++|||||+.+.+   .+......+..+.+.++ ++.+.|++.|.|+..
T Consensus        47 ~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen   47 FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLS  125 (232)
T ss_dssp             SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-
T ss_pred             CcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCC
Confidence            3578999999996543     34677899999999999998432   34444556666666666 789999999999853


Q ss_pred             c--ccCCH----HHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           79 L--RAVTE----EDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ~--~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .  +....    +.+.+.+...+   +.++.+|.-+ +.+-++|..+++.+.
T Consensus       126 ~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  126 EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence            2  11111    22233334445   6688888766 567777776666554

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.82  E-value=5.1e-08  Score=78.52  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~   82 (163)
                      +....++.|.||||+.+|-.....-...+|++++|+|++.+..- .....+..+..   .++| +|+++||+|+.+....
T Consensus       120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~  195 (447)
T PLN03127        120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEEL  195 (447)
T ss_pred             cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHH
Confidence            33445789999999988755444456679999999999865321 12222222222   2578 5789999998642221


Q ss_pred             C---HHHHHHHHHHc-----CCcEEEeccC
Q 031238           83 T---EEDGHSLAEKE-----GLSFLETSAL  104 (163)
Q Consensus        83 ~---~~~~~~~~~~~-----~~~~~~~Sa~  104 (163)
                      .   ..+..++....     .++++.+||.
T Consensus       196 ~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~  225 (447)
T PLN03127        196 LELVEMELRELLSFYKFPGDEIPIIRGSAL  225 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEeccc
Confidence            1   11223333332     2468888875

>PLN03126 Elongation factor Tu; Provisional

Probab=98.80  E-value=3.5e-08  Score=79.98  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=66.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC--
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV--   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~--   82 (163)
                      +..++.|||+||+++|-.....-+..+|++++|+|++....- ....++..+...   ++| +++++||+|+.+..+.  
T Consensus       142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~  217 (478)
T PLN03126        142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLE  217 (478)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHH
Confidence            445788999999999866556667889999999999865322 223344333322   567 7889999998642221  


Q ss_pred             -CHHHHHHHHHHc-----CCcEEEeccCCCCC
Q 031238           83 -TEEDGHSLAEKE-----GLSFLETSALEATN  108 (163)
Q Consensus        83 -~~~~~~~~~~~~-----~~~~~~~Sa~~~~~  108 (163)
                       ..+++..+.+..     .++++.+||.++.+
T Consensus       218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        218 LVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence             122444455543     35789999988854

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.80  E-value=9e-08  Score=72.19  Aligned_cols=88  Identities=22%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ..+.+.+|||||+.++...+...++.+|++++|+|+++......... +..+..   .++|+++++||+|+... . ..+
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~---~~~p~iivvNK~D~~~~-~-~~~  135 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE---AGIPRIIFINKMDRERA-D-FDK  135 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH---cCCCEEEEEECCccCCC-C-HHH
Confidence            44678999999999887778888999999999999998654432222 223322   36899999999998642 1 122


Q ss_pred             HHHHHHHHcCCcEE
Q 031238           86 DGHSLAEKEGLSFL   99 (163)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (163)
                      ....+....+.+++
T Consensus       136 ~~~~l~~~~~~~~~  149 (268)
T cd04170         136 TLAALQEAFGRPVV  149 (268)
T ss_pred             HHHHHHHHhCCCeE
Confidence            33344444454433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.78  E-value=5.5e-08  Score=75.00  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHH-HHHHHH
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQ-TILTEI  120 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~-~l~~~~  120 (163)
                      .+|+|+++||.|+.....    ....+.... ...++.+||+.+.+++++.+ .+.+.+
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            479999999999743221    111222233 44799999999999999887 477665

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.77  E-value=7.2e-08  Score=72.87  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             ecCEEEEEEEEeCCChhh------Hhh------hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEE
Q 031238            3 VEGKTVKAQIWDTAGQER------YRA------ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA   70 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~------~~~------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv   70 (163)
                      +..+.+++.|+||||...      +..      ..+..+.+||.+++++|+++....-. ...+..+..+.  .+|-++|
T Consensus       115 ~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lv  191 (379)
T KOG1423|consen  115 ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILV  191 (379)
T ss_pred             EecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceee
Confidence            345678999999999532      111      12345778999999999986322110 12334444443  4888999


Q ss_pred             eeCCCCcccc-------------cCCH---HHHHHHHHHc------------CC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           71 GNKSDLNHLR-------------AVTE---EDGHSLAEKE------------GL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        71 ~nK~Dl~~~~-------------~~~~---~~~~~~~~~~------------~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .||.|....+             .+..   +..+.+....            ++ .+|++||++|+||+++-++|+.+..
T Consensus       192 mnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  192 MNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             ccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            9999964321             1111   1111111111            11 3899999999999999999887653

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.77  E-value=1.6e-07  Score=72.73  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh----------HHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----------TFDNVLRWLRELRDHAD-SNIVIMMAGN   72 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~piivv~n   72 (163)
                      .-+...+.++|++||+..+.-|-+.+.++++||||.+++..+          -+.+...++..+....- .+.++|++.|
T Consensus       191 ~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLN  270 (354)
T KOG0082|consen  191 TIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLN  270 (354)
T ss_pred             EeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEee
Confidence            444567899999999999999999999999999999997521          13344567777765433 5789999999


Q ss_pred             CCCCccc---------------ccCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           73 KSDLNHL---------------RAVTEEDGHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        73 K~Dl~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      |.||-..               ..-..+.+..+...          ..+-+..++|.+..+|+.+|..+.+.+.....+.
T Consensus       271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~  350 (354)
T KOG0082|consen  271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKD  350 (354)
T ss_pred             cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998211               11123333333221          1345678899999999999999999988766544

>TIGR00503 prfC peptide chain release factor 3

Probab=98.77  E-value=4.5e-08  Score=80.23  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++...+.+.||||||+.+|.......++.+|++|+|+|+++... .....++.... .  .++|+++++||+|+.
T Consensus        75 ~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~--~~~PiivviNKiD~~  145 (527)
T TIGR00503        75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L--RDTPIFTFMNKLDRD  145 (527)
T ss_pred             EeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h--cCCCEEEEEECcccc
Confidence            45567889999999999887766677899999999999987522 12234443332 2  358999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=3.8e-08  Score=67.97  Aligned_cols=112  Identities=15%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      .+++++-+|.+|+..-+..|..++..+|++++.+|+-|.+.|.+.+.-+..+..... ..+|+++.+||+|.+...  ++
T Consensus        62 g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se  139 (193)
T KOG0077|consen   62 GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SE  139 (193)
T ss_pred             cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cH
Confidence            356788999999999999999999999999999999999888887765555544432 579999999999986432  33


Q ss_pred             HHHH------HHHHHcC-----------CcEEEeccCCCCCHHHHHHHHHHH
Q 031238           85 EDGH------SLAEKEG-----------LSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        85 ~~~~------~~~~~~~-----------~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ++.+      +.+-..+           +.++.||...+.+--+.|.|+...
T Consensus       140 ~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  140 DELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            3321      1111111           247889999988888888776543

>cd01858 NGP_1 NGP-1

Probab=98.75  E-value=3.9e-08  Score=68.33  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=56.6

Q ss_pred             hhcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238           28 YYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE  105 (163)
Q Consensus        28 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  105 (163)
                      .++++|++++|+|+.++..  ...+..++.   .. ..++|+++|+||+|+.+.... ......+.+.+....+.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4789999999999988632  222333322   22 235899999999998532211 1122222222223357899999


Q ss_pred             CCCHHHHHHHHHHHH
Q 031238          106 ATNVEKAFQTILTEI  120 (163)
Q Consensus       106 ~~~i~~~~~~l~~~~  120 (163)
                      +.|++++++.+.+.+
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12739 elongation factor G; Reviewed

Probab=98.75  E-value=1.5e-07  Score=79.70  Aligned_cols=68  Identities=21%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +..++.||||||+.++...+...++.+|++|+|+|+.++..-.. ...+..+..   .++|+|+++||+|+.
T Consensus        71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~  138 (691)
T PRK12739         71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI  138 (691)
T ss_pred             CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence            34578999999999888788888999999999999987643222 233333332   258999999999985

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.75  E-value=6.1e-08  Score=82.02  Aligned_cols=95  Identities=18%  Similarity=0.100  Sum_probs=63.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ...++.||||||+.++...+...++.+|++|+|+|++++...... .++..+..   .++|+++++||+|+....  ...
T Consensus        73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~  146 (689)
T TIGR00484        73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLR  146 (689)
T ss_pred             CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHH
Confidence            356789999999998877788889999999999999876544332 23333332   258999999999986422  122


Q ss_pred             HHHHHHHHcCC----cEEEeccCCC
Q 031238           86 DGHSLAEKEGL----SFLETSALEA  106 (163)
Q Consensus        86 ~~~~~~~~~~~----~~~~~Sa~~~  106 (163)
                      ....+....+.    ..+.+|+..+
T Consensus       147 ~~~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       147 VVNQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHHHHHhCCCceeEEeccccCCC
Confidence            33344444343    2455566554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.74  E-value=6.8e-08  Score=77.16  Aligned_cols=128  Identities=14%  Similarity=0.174  Sum_probs=93.0

Q ss_pred             ecCEEEEEEEEeCCChhhHh----hhhh----hhhcC-CcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQERYR----AITS----AYYRG-AVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~----~~~~----~~~~~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      ++.+-..++++||||..+..    ...+    ..+.. --+|+|+.|++.  +.|..+...+|..|..... ++|+|+|.
T Consensus       210 ~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~Ilvl  288 (620)
T KOG1490|consen  210 LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVL  288 (620)
T ss_pred             hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEe
Confidence            35566688999999963321    1000    11111 246888889974  6788888889999987766 78999999


Q ss_pred             eCCCCcccccCCHHH---HHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHH
Q 031238           72 NKSDLNHLRAVTEED---GHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAA  131 (163)
Q Consensus        72 nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~  131 (163)
                      ||+|+....++.++.   .+.+....+++++++|+.+.+|+-++-...++.++..+-++.++.
T Consensus       289 NK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks  351 (620)
T KOG1490|consen  289 NKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKS  351 (620)
T ss_pred             ecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhh
Confidence            999987666665543   344555556899999999999999999999999988877665444

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.72  E-value=1.5e-07  Score=71.98  Aligned_cols=116  Identities=18%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             EEEEEeCCChhhHhh----h---hhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYRA----I---TSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHAD--SNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~----~---~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl   76 (163)
                      .+.+=|.||.-+--+    +   --..+.++.++++|+|++..+   ..++...+..++..+.+  .++|.+||+||+|+
T Consensus       208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~  287 (369)
T COG0536         208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL  287 (369)
T ss_pred             cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence            477889998643211    1   123467899999999998543   46677777788877765  57999999999996


Q ss_pred             cccccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ....+......+.+.+..+.. .+.+||.++.|++++...+.+.+.+..
T Consensus       288 ~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         288 PLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             CcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            543332233344444444432 222999999999999999988887765

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.72  E-value=8.7e-08  Score=72.98  Aligned_cols=114  Identities=20%  Similarity=0.205  Sum_probs=77.0

Q ss_pred             cCEEEEEEEEeCCChhh-----Hhhh---hhhhhc-CCcEEEEEEECC--ChhHHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238            4 EGKTVKAQIWDTAGQER-----YRAI---TSAYYR-GAVGALLVYDIT--KRQTFDNVLRWLRELRDHADSNIVIMMAGN   72 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~-----~~~~---~~~~~~-~~d~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piivv~n   72 (163)
                      +.+...+|++||||.-+     .+..   .-..++ =.++|+|+||++  .+.+.++...++.++.....  .|+++|.|
T Consensus       211 e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~n  288 (346)
T COG1084         211 ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVIN  288 (346)
T ss_pred             ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence            44556899999999632     1111   011122 258899999998  46788888899999987765  89999999


Q ss_pred             CCCCcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           73 KSDLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        73 K~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      |.|+.+...+  +++.......+. ....+++..+.+++.+-+.+.....
T Consensus       289 K~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         289 KIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTAL  336 (346)
T ss_pred             cccccchhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhh
Confidence            9998643332  333333333343 5888999999998877766665543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.71  E-value=1e-07  Score=66.15  Aligned_cols=85  Identities=14%  Similarity=-0.005  Sum_probs=55.1

Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238           33 VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        33 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  112 (163)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.....+ .+....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988755432  22221 1111236899999999998532211 11112232333456899999999999999


Q ss_pred             HHHHHHHHH
Q 031238          113 FQTILTEIY  121 (163)
Q Consensus       113 ~~~l~~~~~  121 (163)
                      ++.+.+.+.
T Consensus        77 ~~~i~~~~~   85 (155)
T cd01849          77 ESAFTKQTN   85 (155)
T ss_pred             HHHHHHHhH
Confidence            999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.66  E-value=2.7e-07  Score=76.16  Aligned_cols=105  Identities=19%  Similarity=0.173  Sum_probs=74.4

Q ss_pred             EEEEEEeCCChhhH------hhhhhhh-h-cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERY------RAITSAY-Y-RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~------~~~~~~~-~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+++.|.||--..      +...+.+ + .+.|++|-|.|+++-+   .-..+--++.+.   ++|++++.|..|..+.
T Consensus        50 ~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe---RnLyltlQLlE~---g~p~ilaLNm~D~A~~  123 (653)
T COG0370          50 HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE---RNLYLTLQLLEL---GIPMILALNMIDEAKK  123 (653)
T ss_pred             ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH---HHHHHHHHHHHc---CCCeEEEeccHhhHHh
Confidence            35789999994221      2233333 3 3569999999999843   222333333333   6899999999998665


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +.+ .-..+.+.+..|+++++++|++|.|++++...+.+.
T Consensus       124 ~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         124 RGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             cCC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            544 334566778889999999999999999999888753

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.60  E-value=2e-07  Score=61.64  Aligned_cols=98  Identities=17%  Similarity=0.102  Sum_probs=69.4

Q ss_pred             EEeCCChh----hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238           12 IWDTAGQE----RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus        12 l~Dt~G~~----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      .+||||.-    .+.+.......++|++++|-.++++.+.-.     ..+...  ...|+|-|++|.||.++.+  .+..
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~d--I~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDAD--ISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchHh--HHHH
Confidence            57899852    333334456889999999999998765211     111111  2467999999999975333  4556


Q ss_pred             HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238           88 HSLAEKEGL-SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        88 ~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +.+..+.|. ++|++|+.++.|+++++..|..
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            667777776 7999999999999999987754

>cd01856 YlqF YlqF

Probab=98.60  E-value=2.4e-07  Score=65.32  Aligned_cols=92  Identities=15%  Similarity=0.016  Sum_probs=60.6

Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEe
Q 031238           22 RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET  101 (163)
Q Consensus        22 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  101 (163)
                      .......++++|++++|+|++.+..... ..+...    . .++|+++|+||+|+.....  .....++.+..+..++.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~-~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i   81 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----L-GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV   81 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----h-cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            3344567899999999999987543211 112221    1 2478999999999853211  111112223334578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHH
Q 031238          102 SALEATNVEKAFQTILTEIY  121 (163)
Q Consensus       102 Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ||+++.|++++.+.+...+.
T Consensus        82 Sa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             ECCCcccHHHHHHHHHHHHH
Confidence            99999999999999888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.57  E-value=9.7e-07  Score=63.63  Aligned_cols=107  Identities=10%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             EEEEEeCCChhhHhh-----hhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238            9 KAQIWDTAGQERYRA-----ITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRA-   81 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-   81 (163)
                      .+.+|||+|......     +....+.++|+++++.+. .   +.+. ..|+..+...   +.|+++|+||+|+..... 
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~  125 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ  125 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence            579999999743211     222336788998888542 2   2233 2444444433   479999999999832111 


Q ss_pred             ----------CCHHHHHHHHH----HcC---CcEEEeccC--CCCCHHHHHHHHHHHHHH
Q 031238           82 ----------VTEEDGHSLAE----KEG---LSFLETSAL--EATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ----------~~~~~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~  122 (163)
                                ...+++++.+.    ..+   .++|.+|+.  .+.|+..+.+.++..+.+
T Consensus       126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence                      00112222222    222   268999998  567888888888887765

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.57  E-value=2.9e-07  Score=62.87  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             hhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238           27 AYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        27 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      ..++++|++++|+|+.++.+..  .+..|+...   . .++|+++|+||+|+..+..  ........+..+..++++||.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            4588999999999998875533  333444322   1 3589999999999853221  123334445556789999998


Q ss_pred             CCCC
Q 031238          105 EATN  108 (163)
Q Consensus       105 ~~~~  108 (163)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.57  E-value=3e-07  Score=65.25  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=46.4

Q ss_pred             EEEEEeCCChhhHhhhhhh---hhcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhc---CCCCeEEEEeeCCCCcc
Q 031238            9 KAQIWDTAGQERYRAITSA---YYRGAVGALLVYDITK-RQTFDNVLRWLRELRDHA---DSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~---~~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~   78 (163)
                      .+.+.|+||+.+.+...-.   +...+.+||||+|++. +..+.++..++-.+....   ...+|++|+.||+|+..
T Consensus        50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            5789999999887653333   4888999999999974 445555544443333322   25799999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.57  E-value=5e-07  Score=71.68  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D   75 (163)
                      ...+.++|++|++..+.-|.+++.++++||||+++++.          ..+.+...++..+....- .+.|+||++||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            45689999999999999999999999999999998531          235566677777765533 5799999999999


Q ss_pred             Cccc----------------cc--CCHHHHHHHHHHc------------CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           76 LNHL----------------RA--VTEEDGHSLAEKE------------GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        76 l~~~----------------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +...                ..  -..+.+..+....            .+.+..++|.+..++..+|+.+.+.+
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            7210                11  2334444443321            12467889999999999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=3.4e-07  Score=69.75  Aligned_cols=109  Identities=21%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--CC
Q 031238            9 KAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--VT   83 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~~   83 (163)
                      ++.|.|.||++-...   ..+.+   .|+.++|+.++.+-.-.+....+.-+. ..+ -+.+|++-||.|+.....  ..
T Consensus        87 ~VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          87 RVSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG-IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc-cceEEEEecccceecHHHHHHH
Confidence            568999999986543   33444   499999999986322112222222111 112 367999999999964322  24


Q ss_pred             HHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        84 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ++++++|.+..   +.+++++||..+.||+.+++.|.+.+..
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            56777777654   4689999999999999999988877744

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.54  E-value=5.8e-07  Score=71.45  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=76.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +.+.+.+.+.||||+-+|....+..++-+|++++++|+.... +.+.+.-+......   +.+.|||+||+|.+..+.-.
T Consensus        64 ~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~  139 (603)
T COG1217          64 NYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDE  139 (603)
T ss_pred             ecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHH
Confidence            445578999999999999999999999999999999998631 22333333333322   45667899999987655321


Q ss_pred             -HHHHHHHHH-------HcCCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q 031238           84 -EEDGHSLAE-------KEGLSFLETSALEAT----------NVEKAFQTILTEIY  121 (163)
Q Consensus        84 -~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  121 (163)
                       .++...+..       +..++++..|+..|.          +..-+|+.|++.+.
T Consensus       140 Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp  195 (603)
T COG1217         140 VVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP  195 (603)
T ss_pred             HHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence             233333332       345688888887654          35566777666653

>PRK13796 GTPase YqeH; Provisional

Probab=98.53  E-value=1.1e-06  Score=69.20  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=60.6

Q ss_pred             hHhhhhhhhhcCCc-EEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH----HHHHHc
Q 031238           20 RYRAITSAYYRGAV-GALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH----SLAEKE   94 (163)
Q Consensus        20 ~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~~   94 (163)
                      .|...... +...+ .+++|+|+.+..     ..|...+.+... +.|+++|+||.|+.. .....+.+.    .+++..
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence            34444433 34445 999999998743     223334443333 579999999999964 233333333    335555


Q ss_pred             CC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238           95 GL---SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        95 ~~---~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=4.2e-06  Score=60.31  Aligned_cols=68  Identities=24%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             EEEEeCCChhhHhhhhhhhhc---CCcEEEEEEECCC-hhHHHHHH-HHHHHHHhh--cCCCCeEEEEeeCCCCc
Q 031238           10 AQIWDTAGQERYRAITSAYYR---GAVGALLVYDITK-RQTFDNVL-RWLRELRDH--ADSNIVIMMAGNKSDLN   77 (163)
Q Consensus        10 l~l~Dt~G~~~~~~~~~~~~~---~~d~ii~v~d~~~-~~s~~~~~-~~~~~i~~~--~~~~~piivv~nK~Dl~   77 (163)
                      +.+.|.||+.+.+.-...+++   .+-++|||+|..- .....++. .++.-+...  ...+.|+++.-||.|+.
T Consensus        84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen   84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            678999999998877777777   7999999999863 33444444 334433333  23578999999999984

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.50  E-value=1.2e-06  Score=67.85  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=72.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--C
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--T   83 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~   83 (163)
                      ..+.+.|.||+|...-...   ...-+|.++++.+...+..+..+..   .+..     +.-++|+||+|+......  .
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~  215 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRA  215 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHH
Confidence            3567899999997633222   4667999999977555444433321   1111     223799999998642211  1


Q ss_pred             HHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHHH
Q 031238           84 EEDGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHIISKKALAA  131 (163)
Q Consensus        84 ~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~  131 (163)
                      ..+.......       +..+++.+||+++.|++++++.+.+.+...........
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~  270 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA  270 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence            1122222221       22479999999999999999999998776655444433

>TIGR00101 ureG urease accessory protein UreG

Probab=98.50  E-value=8.5e-07  Score=64.12  Aligned_cols=102  Identities=13%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      ....+.++.|..-..... ..+  +|.+|.|+|+++..+...  .+...+      ..--++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            456778888842111111 222  688999999987655321  111111      111278999999964212223344


Q ss_pred             HHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           88 HSLAEK--EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        88 ~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..+.  .+.+++++||++|+|++++|+++.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444444  356899999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.50  E-value=1.1e-06  Score=66.61  Aligned_cols=91  Identities=18%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc
Q 031238           24 ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        24 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                      .....++.+|++++|+|+..+.+...  .++....   . ++|+++|+||+|+.+...  .....++.+..+..++.+||
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~-~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G-NKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C-CCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence            34566889999999999987644221  1111111   1 579999999999853211  11111222334567899999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 031238          104 LEATNVEKAFQTILTEIYH  122 (163)
Q Consensus       104 ~~~~~i~~~~~~l~~~~~~  122 (163)
                      +++.|++++.+.+.+.+..
T Consensus        86 ~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        86 KKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CCcccHHHHHHHHHHHHHH
Confidence            9999999999888777643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=8.2e-07  Score=69.60  Aligned_cols=107  Identities=21%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HH---HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .-..+.+.+.|+||+++|-.-.-.-...||+.|+|+|+.+.+.   |.   ..+...  ++.....-..+||++||+|..
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tlGi~~lIVavNKMD~v  158 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTLGIKQLIVAVNKMDLV  158 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhcCCceEEEEEEccccc
Confidence            4455678999999999886554455778999999999987631   11   112111  111122245789999999986


Q ss_pred             ccccCCHHH----HHHHHHHcCC-----cEEEeccCCCCCHHHH
Q 031238           78 HLRAVTEED----GHSLAEKEGL-----SFLETSALEATNVEKA  112 (163)
Q Consensus        78 ~~~~~~~~~----~~~~~~~~~~-----~~~~~Sa~~~~~i~~~  112 (163)
                      +-++..+++    ...+.+..|+     +++++|+..|.|+.+.
T Consensus       159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            422222222    2334444443     5999999999997653

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.2e-06  Score=67.43  Aligned_cols=97  Identities=29%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH--HHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL--RWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      ++.+-||||++.|......=-..||+.|+++|+..+. +++.+  .++..+   .+ -..+++.+||+||.+-.+-.+++
T Consensus        87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sL---LG-IrhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASL---LG-IRHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             eEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHH---hC-CcEEEEEEeeecccccCHHHHHH
Confidence            6789999999999654333356799999999996532 22222  222222   22 36789999999997644333333


Q ss_pred             ----HHHHHHHcCC---cEEEeccCCCCCHH
Q 031238           87 ----GHSLAEKEGL---SFLETSALEATNVE  110 (163)
Q Consensus        87 ----~~~~~~~~~~---~~~~~Sa~~~~~i~  110 (163)
                          ...++.+.++   .++++||..|.|+-
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                3456677765   69999999999964

>cd01850 CDC_Septin CDC/Septin

Probab=98.45  E-value=1.4e-06  Score=66.12  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=58.7

Q ss_pred             ecCEEEEEEEEeCCChhhH--------------------------hhhhhhhhc--CCcEEEEEEECCChhHHHHH-HHH
Q 031238            3 VEGKTVKAQIWDTAGQERY--------------------------RAITSAYYR--GAVGALLVYDITKRQTFDNV-LRW   53 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~--------------------------~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~   53 (163)
                      .+|..+.+.+|||||..+.                          ...+...+.  ++|+++|+++.+... +... ...
T Consensus        58 ~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~  136 (276)
T cd01850          58 ENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEF  136 (276)
T ss_pred             ECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHH
Confidence            3577789999999994221                          011112333  478888888876421 1111 222


Q ss_pred             HHHHHhhcCCCCeEEEEeeCCCCccccc--CCHHHHHHHHHHcCCcEEEeccC
Q 031238           54 LRELRDHADSNIVIMMAGNKSDLNHLRA--VTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        54 ~~~i~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      +..+.   . .+|+++|+||+|+....+  .....+.+.+...+++++.....
T Consensus       137 lk~l~---~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         137 MKRLS---K-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHh---c-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            33332   2 589999999999854222  23455667778888888876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.9e-06  Score=71.87  Aligned_cols=111  Identities=24%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc------
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL------   79 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~------   79 (163)
                      .+-++||||++.|..++.....-||..|+|+|+..+   +.++.+    +.++   ..+.|+||..||+|....      
T Consensus       541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCC
Confidence            357899999999999999989999999999999864   333332    2222   236899999999996321      


Q ss_pred             c-----------cCCH-------HHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           80 R-----------AVTE-------EDGHSLAEKEG---------------LSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        80 ~-----------~~~~-------~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      .           .+..       ..+.+|+.+ |               +.++++||.+|+||-+++-+|++.......+
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQ-gLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~  692 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQ-GLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE  692 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-ccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence            0           0100       111222221 2               1367999999999999999998876655444


Q ss_pred             h
Q 031238          127 K  127 (163)
Q Consensus       127 ~  127 (163)
                      +
T Consensus       693 k  693 (1064)
T KOG1144|consen  693 K  693 (1064)
T ss_pred             H
Confidence            3

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.38  E-value=8.5e-07  Score=75.47  Aligned_cols=71  Identities=21%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +++..+++.||||||+.+|.......++.+|++|+|+|+..+........ +.....   .+.|+++++||+|..
T Consensus        81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHHHH---cCCCEEEEEEChhcc
Confidence            45667899999999999888777888999999999999987532222112 222221   256888999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.37  E-value=2.6e-06  Score=64.95  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             CCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH
Q 031238           15 TAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK   93 (163)
Q Consensus        15 t~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~   93 (163)
                      .||+..- .......++.+|++++|+|+.++.+...  .++....   . ++|+++|.||+|+.+...  .+....+.+.
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            3555322 2234556889999999999987643221  1122221   1 579999999999853211  1112222233


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           94 EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        94 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..++.+||+++.|++++++.+...+..
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            45678999999999999999888777644

>PRK01889 GTPase RsgA; Reviewed

Probab=98.37  E-value=2.3e-06  Score=67.20  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHH-HcCCcEEEeccCCCC
Q 031238           29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE-KEGLSFLETSALEAT  107 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  107 (163)
                      .+++|.+++|++++.+-....+..++......   +++.++|+||+||.+..   .+....+.. ..+++++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            57899999999997433333444444443322   57778999999996421   112222222 346789999999999


Q ss_pred             CHHHHHHHHH
Q 031238          108 NVEKAFQTIL  117 (163)
Q Consensus       108 ~i~~~~~~l~  117 (163)
                      |++++...+.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999888774

>PRK00007 elongation factor G; Reviewed

Probab=98.32  E-value=5.5e-06  Score=70.32  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      ..++.|.||||+.++.......++.+|++|+|+|+..+..... ...+..+...   ++|+|+++||+|+.+..  ....
T Consensus        74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~--~~~~  147 (693)
T PRK00007         74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD--FYRV  147 (693)
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC--HHHH
Confidence            4578999999998887666777889999999999986643332 2223333322   57899999999986422  2233


Q ss_pred             HHHHHHHcCC----cEEEeccCCC
Q 031238           87 GHSLAEKEGL----SFLETSALEA  106 (163)
Q Consensus        87 ~~~~~~~~~~----~~~~~Sa~~~  106 (163)
                      .+.+.+.++.    ..+++|+..+
T Consensus       148 ~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        148 VEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHHhCCCeeeEEecCccCCc
Confidence            3444444443    2455566554

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.31  E-value=2.4e-06  Score=65.52  Aligned_cols=105  Identities=18%  Similarity=0.053  Sum_probs=64.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH-
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE-   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~-   84 (163)
                      ..+.+.|.||+|.....   ......+|.++++-+....   +++......+     .++|.++|+||+|+........ 
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHH
Confidence            35678999999864222   2346678888888544433   3333222222     1467899999999864321110 


Q ss_pred             -HH----HHHHHH---HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           85 -ED----GHSLAE---KEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        85 -~~----~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                       ..    ...+..   .+..+++++||+++.|++++++++.+.+.
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence             00    011111   12236899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.31  E-value=7.5e-06  Score=59.48  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      ..+.+.+|.|.-....   .+.-..+..+.|+|+.+.+...  ... ...     ...|.++++||+|+.+.........
T Consensus       103 ~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~  171 (207)
T TIGR00073       103 IDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVEKM  171 (207)
T ss_pred             CCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHHHH
Confidence            4677888888311110   1112356667788887643211  110 111     1367899999999964322223334


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ....+..  ..+++++||++++|++++|+++.+.
T Consensus       172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4344433  3689999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.29  E-value=1.6e-05  Score=56.91  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=69.4

Q ss_pred             EEEEeCCC----------hhhHhhhhhhhhcC---CcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238           10 AQIWDTAG----------QERYRAITSAYYRG---AVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus        10 l~l~Dt~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.|.|.||          .+.+..+...|++.   -.++++++|+..+....  ++.+|+..      .++|++|++||+
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~  145 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKA  145 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEcc
Confidence            67899998          34555666666654   47889999998764432  23345443      269999999999


Q ss_pred             CCcccccCCHHHHHHHHHHcC----Cc--EEEeccCCCCCHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEG----LS--FLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      |-.+.... .......++..+    ..  ++..|+.++.|++++.+.|.+.+.
T Consensus       146 DKi~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         146 DKLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             ccCChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            97653332 122222332222    22  778899999999999888887664

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.27  E-value=5.2e-06  Score=61.68  Aligned_cols=110  Identities=19%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             EEEEEeCCChhhHhhhhhhhh--------cCCcEEEEEEECC---ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQERYRAITSAYY--------RGAVGALLVYDIT---KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.++|||||.+....+...-        ...-++++++|+.   ++..|-...  +..+.-....+.|.|.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcc
Confidence            578999999987654443332        3566889999986   344443221  111111111268999999999996


Q ss_pred             cccc------------C-------CHHHHHHHHH---HcCC--cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           78 HLRA------------V-------TEEDGHSLAE---KEGL--SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        78 ~~~~------------~-------~~~~~~~~~~---~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ....            .       .......+++   .++.  .++.+|+.+++++++++..+-+.+
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            4210            0       0001112222   2232  699999999999999988776543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3.8e-06  Score=66.46  Aligned_cols=90  Identities=21%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             CeecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            1 MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         1 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      |.+++....++|.||||+++|..-.-..+.-+|..|+|+|+..+..-. ..+++. +.+.  .+.||+-++||.|.....
T Consensus        74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfe-Vcrl--R~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFE-VCRL--RDIPIFTFINKLDREGRD  149 (528)
T ss_pred             EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHH-HHhh--cCCceEEEeeccccccCC
Confidence            457788889999999999998776666788899999999998653322 233332 2222  479999999999975433


Q ss_pred             cCCHHHHHHHHHHcCC
Q 031238           81 AVTEEDGHSLAEKEGL   96 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~   96 (163)
                      +  .+...++.+..++
T Consensus       150 P--~ELLdEiE~~L~i  163 (528)
T COG4108         150 P--LELLDEIEEELGI  163 (528)
T ss_pred             h--HHHHHHHHHHhCc
Confidence            2  3445555555444

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.22  E-value=1.1e-05  Score=59.07  Aligned_cols=69  Identities=22%  Similarity=0.397  Sum_probs=50.1

Q ss_pred             EEEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHH---HHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.|.+||.+|++.+     .......+++++++++|||+...+--.++   ..-++.+.+..+ ...+++...|.|+.
T Consensus        53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv  129 (295)
T KOG3886|consen   53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLV  129 (295)
T ss_pred             heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhc
Confidence            56789999999854     22455678999999999999865433333   344455555555 67899999999984

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.20  E-value=3.4e-05  Score=59.03  Aligned_cols=112  Identities=24%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             ecCEEEEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhH-HHHHHH----------------------
Q 031238            3 VEGKTVKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQT-FDNVLR----------------------   52 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~----------------------   52 (163)
                      ++++..++|+.|+||.-..-       ...-...++||.+++|+|+..... .+-+..                      
T Consensus       105 l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~  184 (365)
T COG1163         105 LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKE  184 (365)
T ss_pred             EeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEec
Confidence            56777889999999864322       122345789999999999985443 322211                      


Q ss_pred             ----------------------HHHHHHh------------------h-cC--CCCeEEEEeeCCCCcccccCCHHHHHH
Q 031238           53 ----------------------WLRELRD------------------H-AD--SNIVIMMAGNKSDLNHLRAVTEEDGHS   89 (163)
Q Consensus        53 ----------------------~~~~i~~------------------~-~~--~~~piivv~nK~Dl~~~~~~~~~~~~~   89 (163)
                                            .+.+..-                  . ..  .=+|.++|.||.|+..     .+....
T Consensus       185 ~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~  259 (365)
T COG1163         185 SGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELER  259 (365)
T ss_pred             cCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHH
Confidence                                  1111000                  0 00  0178999999999853     344444


Q ss_pred             HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           90 LAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        90 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +.+..  .++.+||..+.|++++.+.+.+.+-
T Consensus       260 l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         260 LARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             HHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            44433  7999999999999999999988663

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.19  E-value=1.3e-05  Score=52.67  Aligned_cols=76  Identities=28%  Similarity=0.352  Sum_probs=55.8

Q ss_pred             hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238           25 TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        25 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      ...+++.++++++||+.++..+++.+  |...+....+.+.|+++++||.|+.+...+..+...        .++++|++
T Consensus        40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~  109 (124)
T smart00010       40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAK  109 (124)
T ss_pred             cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCC
Confidence            45568889999999999999998765  777666555557889999999998543344433333        34567889


Q ss_pred             CCCCHH
Q 031238          105 EATNVE  110 (163)
Q Consensus       105 ~~~~i~  110 (163)
                      ++.|+.
T Consensus       110 ~~~~~~  115 (124)
T smart00010      110 TPEEGE  115 (124)
T ss_pred             Ccchhh
Confidence            998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.18  E-value=2.4e-05  Score=62.24  Aligned_cols=51  Identities=22%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH-HHHHHHH
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK-AFQTILT  118 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~  118 (163)
                      .+|+|+|+||.|+.....    ....+.+..+..++.+||+.+.++.+ +.+.+++
T Consensus       217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~  268 (396)
T PRK09602        217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLID  268 (396)
T ss_pred             CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence            489999999999742111    12222222345799999999999888 4444444

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.16  E-value=9.8e-06  Score=46.31  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CcEEEEEEECCC--hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238           32 AVGALLVYDITK--RQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus        32 ~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .++++|++|++.  +.++++...++.+++.... ++|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            578999999984  5788888899999988875 699999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.13  E-value=2.1e-05  Score=59.85  Aligned_cols=96  Identities=17%  Similarity=0.103  Sum_probs=68.0

Q ss_pred             hHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcE
Q 031238           20 RYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSF   98 (163)
Q Consensus        20 ~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~   98 (163)
                      +.+.+.+.-+.+.|-+++++.+.+|+ +..-+..++.....   .++..++++||.||.+..+...++...+....|+++
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v  144 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV  144 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence            34556666777889999999998875 34444444433322   256667789999997644433345666777789999


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 031238           99 LETSALEATNVEKAFQTILT  118 (163)
Q Consensus        99 ~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +.+|++++.+++++.+.+..
T Consensus       145 ~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         145 LFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             EEecCcCcccHHHHHHHhcC
Confidence            99999999999998887753

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.06  E-value=1.5e-05  Score=69.01  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+.|+||||+.+|.......++.+|+.|+|+|+..+...... ..+..+..   .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence            367889999999999987777888999999999999876443322 22333322   368999999999975

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=6.4e-05  Score=59.60  Aligned_cols=110  Identities=15%  Similarity=0.042  Sum_probs=72.1

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      ..+.|.|.+|++++-...-.-+...|..++|+++++.-..... ..+.- .+..+ -...++|+||.|..+...+ .+.+
T Consensus        50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtg-EhL~i-Ldllg-i~~giivltk~D~~d~~r~-e~~i  125 (447)
T COG3276          50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTG-EHLLI-LDLLG-IKNGIIVLTKADRVDEARI-EQKI  125 (447)
T ss_pred             CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhH-HHHHH-HHhcC-CCceEEEEeccccccHHHH-HHHH
Confidence            3678999999998755444556789999999999754222111 11111 12222 2456899999998653322 2233


Q ss_pred             HHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           88 HSLAEKE---GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        88 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +++....   ..+++.+|+++|+||+++-+.|.....
T Consensus       126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            3333322   357899999999999999998888774

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.04  E-value=1.3e-05  Score=68.50  Aligned_cols=70  Identities=23%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++..+.+.|+||||+.+|.......++.+|++|+|+|+..+..... ...+......   +.|.|+++||+|+.
T Consensus        83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc---CCCeEEEEECchhh
Confidence            4457789999999999988777888999999999999987533222 2222222222   46779999999974

>PTZ00416 elongation factor 2; Provisional

Probab=98.04  E-value=1.6e-05  Score=68.87  Aligned_cols=67  Identities=22%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ...+.|+||||+.+|.......++.+|++|+|+|+..+..... ...+..+...   ++|+|+++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence            5678999999999987777788999999999999987643322 2333333322   57999999999985

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.03  E-value=3.8e-05  Score=62.67  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      .|....+.+-|.+.. ....+...- ..||++.++||.+++.+|.-+...++.-...  ...|++.|++|.|+.+..+..
T Consensus       470 ~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~  545 (625)
T KOG1707|consen  470 KGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRY  545 (625)
T ss_pred             ccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhcc
Confidence            345556667776654 333333333 7899999999999999998776655544333  479999999999996544322


Q ss_pred             HHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        84 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .-+-.++++++++ +.+.+|.++.-. .++|..|.......
T Consensus       546 ~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~P  585 (625)
T KOG1707|consen  546 SIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYP  585 (625)
T ss_pred             CCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCC
Confidence            2223778999998 567777775333 78888877665443

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.01  E-value=4e-05  Score=57.20  Aligned_cols=121  Identities=14%  Similarity=0.170  Sum_probs=78.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D   75 (163)
                      .+.+..+|.+|+++.+.-|-..+.+.-++|||...+..          ..+.+...++..+=+..- ..+.+|++.||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            45678999999999999999999999999999987541          122233333333322111 3578999999999


Q ss_pred             Cccc----------------------------ccCCHHH--HHHHHHH--------c-----CCcEEEeccCCCCCHHHH
Q 031238           76 LNHL----------------------------RAVTEED--GHSLAEK--------E-----GLSFLETSALEATNVEKA  112 (163)
Q Consensus        76 l~~~----------------------------~~~~~~~--~~~~~~~--------~-----~~~~~~~Sa~~~~~i~~~  112 (163)
                      +...                            .......  .+-+.+.        .     -+.+.+++|.+.++|..+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            8210                            0011111  1111111        1     124678899999999999


Q ss_pred             HHHHHHHHHHHHhHh
Q 031238          113 FQTILTEIYHIISKK  127 (163)
Q Consensus       113 ~~~l~~~~~~~~~~~  127 (163)
                      |+.....+..+...+
T Consensus       361 FnDcrdiIqr~hlrq  375 (379)
T KOG0099|consen  361 FNDCRDIIQRMHLRQ  375 (379)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988887766554

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=2.4e-05  Score=62.76  Aligned_cols=118  Identities=21%  Similarity=0.188  Sum_probs=71.7

Q ss_pred             EEEEEEEEeCCChhhH-h--------hhhhhhhcCCcEEEEEEEC--CChhHHHHHHHHHHHHHhhcC------CCCeEE
Q 031238            6 KTVKAQIWDTAGQERY-R--------AITSAYYRGAVGALLVYDI--TKRQTFDNVLRWLRELRDHAD------SNIVIM   68 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~-~--------~~~~~~~~~~d~ii~v~d~--~~~~s~~~~~~~~~~i~~~~~------~~~pii   68 (163)
                      ..+.+.|.||+|.++. .        ...+..+..+|++++|+|+  .+-.+...+...+.....-..      ...|++
T Consensus       314 ~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i  393 (531)
T KOG1191|consen  314 NGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRII  393 (531)
T ss_pred             CCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceE
Confidence            3455778899998661 1        1234557889999999999  343333333333333322111      247899


Q ss_pred             EEeeCCCCccc-ccCCHHHHHHHHHHcC---Cc-EEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           69 MAGNKSDLNHL-RAVTEEDGHSLAEKEG---LS-FLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        69 vv~nK~Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ++.||.|+..+ ...... ...+....+   ++ +.++|+++++|++++...+...+....
T Consensus       394 ~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  394 LVANKSDLVSKIPEMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             EEechhhccCccccccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence            99999998543 111110 111111122   33 456999999999999999998886654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=1.7e-05  Score=67.04  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.++|+||||+.+|.......++-+|+.|+|+|+........-.-|. +..+   .++|.++++||.|.
T Consensus        75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~r-qa~~---~~vp~i~fiNKmDR  140 (697)
T COG0480          75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWR-QADK---YGVPRILFVNKMDR  140 (697)
T ss_pred             ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHH-HHhh---cCCCeEEEEECccc
Confidence            578999999999999999999999999999999998765443333333 3332   36899999999996

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=2.1e-05  Score=65.22  Aligned_cols=70  Identities=26%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+++.+-+++.||||+..+.......++-+|++++++|+-.+..++.- .++....   ....|+++|+||.|.
T Consensus       192 ~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai---q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  192 SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI---QNRLPIVVVINKVDR  261 (971)
T ss_pred             CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH---hccCcEEEEEehhHH
Confidence            367888999999999999988888889999999999999887766433 2222222   236899999999995

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=3e-05  Score=63.23  Aligned_cols=107  Identities=24%  Similarity=0.214  Sum_probs=66.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHH---HHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFD---NVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      ++.....+.|.|+||+..|-.-.-.-...+|+.|+|+|++..+   .|+   .++... .+.+..+ -..+||++||.|+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lg-i~qlivaiNKmD~  327 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLG-ISQLIVAINKMDL  327 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcC-cceEEEEeecccc
Confidence            3455667899999998887655445566799999999997531   122   122222 2222223 3578999999998


Q ss_pred             cccccCCHHHH----HHHH-HHcC-----CcEEEeccCCCCCHHH
Q 031238           77 NHLRAVTEEDG----HSLA-EKEG-----LSFLETSALEATNVEK  111 (163)
Q Consensus        77 ~~~~~~~~~~~----~~~~-~~~~-----~~~~~~Sa~~~~~i~~  111 (163)
                      .+=.+-..+++    ..+. +..|     +.+++||+.+|+|+..
T Consensus       328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            54222122332    2233 3334     3699999999999653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.89  E-value=0.00033  Score=50.27  Aligned_cols=111  Identities=16%  Similarity=0.091  Sum_probs=61.8

Q ss_pred             EEEEEEeCCChhhHh--------hh---hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQERYR--------AI---TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~--------~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~   74 (163)
                      ..+.++||||..+..        .+   ......+.|++++|+++.+. +-+ ....+..+....+  .-.+++++.|+.
T Consensus        49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~  126 (196)
T cd01852          49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEE-EEQAVETLQELFGEKVLDHTIVLFTRG  126 (196)
T ss_pred             eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHH-HHHHHHHHHHHhChHhHhcEEEEEECc
Confidence            368999999964321        11   11224678999999999862 211 1223333333322  125789999999


Q ss_pred             CCcccccC------CHHHHHHHHHHcCCcEEEeccC-----CCCCHHHHHHHHHHHH
Q 031238           75 DLNHLRAV------TEEDGHSLAEKEGLSFLETSAL-----EATNVEKAFQTILTEI  120 (163)
Q Consensus        75 Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~-----~~~~i~~~~~~l~~~~  120 (163)
                      |......+      .....+.+.+..+-.|+..+.+     .+.++.++++.+.+.+
T Consensus       127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~  183 (196)
T cd01852         127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMV  183 (196)
T ss_pred             cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence            96432211      1133455555556566555543     4445666665555444

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01882 BMS1 Bms1

Probab=97.86  E-value=0.00017  Score=53.07  Aligned_cols=96  Identities=15%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCccccc-CC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRA-VT   83 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~-~~   83 (163)
                      ...++.++||||..  ..+. ...+.+|++++++|++.+..... ..++..+...   +.| +++|+||.|+..... ..
T Consensus        81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~  153 (225)
T cd01882          81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLR  153 (225)
T ss_pred             CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHH
Confidence            34567899999864  2222 34688999999999986433222 1222322222   466 455999999853221 10


Q ss_pred             --HHHHHH-HHHHc--CCcEEEeccCCCCC
Q 031238           84 --EEDGHS-LAEKE--GLSFLETSALEATN  108 (163)
Q Consensus        84 --~~~~~~-~~~~~--~~~~~~~Sa~~~~~  108 (163)
                        ...++. +....  +.+++.+||++...
T Consensus       154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence              111222 22211  34799999998854

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.85  E-value=0.00016  Score=47.29  Aligned_cols=59  Identities=25%  Similarity=0.253  Sum_probs=38.3

Q ss_pred             EEEEEeCCChhh----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            9 KAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.|+||||...          +....+. +..+|++++|+|++++.. +....++..+.    .+.|+++|+||
T Consensus        48 ~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   48 KFILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             EEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             eEEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            357999999632          1223333 488999999999887422 22233334442    36899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.84  E-value=0.00045  Score=52.04  Aligned_cols=114  Identities=17%  Similarity=0.156  Sum_probs=66.1

Q ss_pred             EEEEEEEeCCChhhH------hhhhhhhhc--CCcEEEEEEECCC---hhHHH-HHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            7 TVKAQIWDTAGQERY------RAITSAYYR--GAVGALLVYDITK---RQTFD-NVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~------~~~~~~~~~--~~d~ii~v~d~~~---~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      .....++||||+.+-      ..+....++  ..-+++|++|...   +..|= +.......+.   ....|+|++.||.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~  191 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKT  191 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecc
Confidence            356789999998541      222222232  3567788888743   33332 2222222222   1369999999999


Q ss_pred             CCcccc---c--CCHHHHHHHHH------------H---------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           75 DLNHLR---A--VTEEDGHSLAE------------K---------EGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        75 Dl~~~~---~--~~~~~~~~~~~------------~---------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      |+.+..   .  -..+..++-..            .         .++..+.+|+.+|.|.+++|..+-+.+-..
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            985421   0  00111111111            1         145689999999999999999887665443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.82  E-value=0.00014  Score=59.26  Aligned_cols=120  Identities=22%  Similarity=0.411  Sum_probs=87.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~-   79 (163)
                      .+++....+-+.|.+|...     ..|-..+|++||||.+.+.++|+.+..+...+-.+.. ..+|+++++++.-+... 
T Consensus        71 vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~  145 (749)
T KOG0705|consen   71 VVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKR  145 (749)
T ss_pred             EeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhccc
Confidence            3466666777778777332     4677889999999999999999888776665544433 46888888887654322 


Q ss_pred             -ccCCHHHHHHH-HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           80 -RAVTEEDGHSL-AEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        80 -~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                       +.+.+.....+ ++...+.||+.++.+|.+++.+|+.+...+......
T Consensus       146 ~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  146 PRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             ccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhh
Confidence             34444444444 445567899999999999999999999888776433

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.68  E-value=0.0013  Score=50.75  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=45.7

Q ss_pred             CCeEEEEeeCCCC----cccccCC-------HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           64 NIVIMMAGNKSDL----NHLRAVT-------EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        64 ~~piivv~nK~Dl----~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ++|++||.+|+|.    ....+..       ...++.||-.+|...+.+|++...|++-+...|.+.++-
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence            4899999999997    3222222       234566777788899999999999999999999887754

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.65  E-value=0.00031  Score=52.82  Aligned_cols=111  Identities=12%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             EEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238            9 KAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL--   79 (163)
Q Consensus         9 ~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~--   79 (163)
                      .+.|||+||..+       |+.....++...|.++.+.++.|+.---+ ..+++.+....- +.++++++|..|....  
T Consensus        88 ~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~  165 (296)
T COG3596          88 NLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAEPGR  165 (296)
T ss_pred             ceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhcccc
Confidence            478999999754       66667778889999999999987621111 123333333322 4899999999996322  


Q ss_pred             ------ccCCHHHHHHHH-------HHc--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 ------RAVTEEDGHSLA-------EKE--GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 ------~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                            ..-+....+.+.       +-.  -.+++..+...+-|++++..+++..+.
T Consensus       166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence                  111121111111       111  236788888999999999998887664

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.60  E-value=0.001  Score=52.42  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             EEEEEeCCChhhHh-h-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--H
Q 031238            9 KAQIWDTAGQERYR-A-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--E   84 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~-~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~   84 (163)
                      -+.|.||.|++.|- . ++-..-+..|-.++++.+++..+-- .+..+--+..   .+.|+|++.||+|+..+..+.  .
T Consensus       202 lVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~  277 (527)
T COG5258         202 LVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVV  277 (527)
T ss_pred             EEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHH
Confidence            46799999999873 2 3333445789999999998865421 1222222221   269999999999985321110  1


Q ss_pred             HHHHHH----------------------HHHcC---CcEEEeccCCCCCHHHHHH
Q 031238           85 EDGHSL----------------------AEKEG---LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        85 ~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~~~~  114 (163)
                      +++..+                      +-+.+   .++|.+|+.+|+|++-+.+
T Consensus       278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e  332 (527)
T COG5258         278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE  332 (527)
T ss_pred             HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH
Confidence            111111                      11111   3789999999999765544

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.0003  Score=53.42  Aligned_cols=92  Identities=24%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCC-eEEEEeeCCCCcccccCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNI-VIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~-piivv~nK~Dl~~~~~~~   83 (163)
                      -++-..|.||+.+|-...-.--...|+.|+|+++++.   +.-+.+    ...+++   ++ .++++.||+|+.++.+..
T Consensus        75 rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv---Gvp~ivvflnK~Dmvdd~ell  147 (394)
T COG0050          75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV---GVPYIVVFLNKVDMVDDEELL  147 (394)
T ss_pred             ceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc---CCcEEEEEEecccccCcHHHH
Confidence            3556789999998854333335668999999999874   233222    111222   45 478899999997654432


Q ss_pred             ---HHHHHHHHHHcCC-----cEEEeccCCC
Q 031238           84 ---EEDGHSLAEKEGL-----SFLETSALEA  106 (163)
Q Consensus        84 ---~~~~~~~~~~~~~-----~~~~~Sa~~~  106 (163)
                         .-+..++..++++     +++.-||...
T Consensus       148 elVemEvreLLs~y~f~gd~~Pii~gSal~a  178 (394)
T COG0050         148 ELVEMEVRELLSEYGFPGDDTPIIRGSALKA  178 (394)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceeechhhhh
Confidence               2345667777765     4666676443

>smart00053 DYNc Dynamin, GTPase

Probab=97.58  E-value=0.0004  Score=51.69  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=43.5

Q ss_pred             EEEEEEeCCChhh-------------Hhhhhhhhhc-CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            8 VKAQIWDTAGQER-------------YRAITSAYYR-GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         8 ~~l~l~Dt~G~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      ..+.|.|+||...             ...+...|++ ..+++++|+|++..-.-.+...+...+.   +.+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            4678999999742             2335566777 4569999999875322112222233322   236899999999


Q ss_pred             CCCcc
Q 031238           74 SDLNH   78 (163)
Q Consensus        74 ~Dl~~   78 (163)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99854

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00085  Score=52.14  Aligned_cols=109  Identities=19%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHH-HHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLR-WLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .++.+++.|.|.||+...   .+..+.+   .|..++|+|+..+..-....- .+-++.     -...+||+||.|....
T Consensus        66 q~e~lq~tlvDCPGHasL---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE  137 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHASL---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPE  137 (522)
T ss_pred             ccccceeEEEeCCCcHHH---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccc
Confidence            356788899999998654   3444444   488899999975322111111 112211     2346778888886322


Q ss_pred             --ccCCHH-HHHHHHH---HcC----CcEEEeccCCC----CCHHHHHHHHHHHH
Q 031238           80 --RAVTEE-DGHSLAE---KEG----LSFLETSALEA----TNVEKAFQTILTEI  120 (163)
Q Consensus        80 --~~~~~~-~~~~~~~---~~~----~~~~~~Sa~~~----~~i~~~~~~l~~~~  120 (163)
                        +.-..+ ......+   ..+    .+++++||..|    ++|.++.+.|.+.+
T Consensus       138 ~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  138 NQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             hhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence              221111 1222222   222    47999999999    55666555555444

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.56  E-value=0.0014  Score=53.32  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=77.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECCChhH-HHHHHHHHHHHHh----------------------
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDITKRQT-FDNVLRWLRELRD----------------------   59 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~i~~----------------------   59 (163)
                      ..++.+|-..|...+..+....+..    --+||+|.|.+.|-. ++.+..|+.-+..                      
T Consensus        72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~  151 (472)
T PF05783_consen   72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ  151 (472)
T ss_pred             CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3468899998876676665554442    257888999998733 3333333332222                      


Q ss_pred             ---hc-------------------------------------CCCCeEEEEeeCCCCc----ccccCC-------HHHHH
Q 031238           60 ---HA-------------------------------------DSNIVIMMAGNKSDLN----HLRAVT-------EEDGH   88 (163)
Q Consensus        60 ---~~-------------------------------------~~~~piivv~nK~Dl~----~~~~~~-------~~~~~   88 (163)
                         +.                                     +-++|++||.+|+|..    ......       ...++
T Consensus       152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR  231 (472)
T PF05783_consen  152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR  231 (472)
T ss_pred             HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence               00                                     0138999999999952    212221       22345


Q ss_pred             HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           89 SLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        89 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+|-.+|...+.+|++...+++.++..|.+.++..
T Consensus       232 ~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  232 TFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             HHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            66777888999999999999999998888887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.001  Score=49.31  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=70.4

Q ss_pred             EEEEEEEEeCCChhhHhh---hhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-c
Q 031238            6 KTVKAQIWDTAGQERYRA---ITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-L   79 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~   79 (163)
                      .-+.+++||.||+..+-.   --...++++.++|+|+|+-+.  +.+..+...+....+.++ ++.+=|++.|.|-.. +
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp-~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNP-NINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCC-CceEEEEEEeccCCchh
Confidence            346789999999965421   234678999999999998653  233333334444344444 678888999999532 1


Q ss_pred             ccC-CH-----HHHHHHHHHcCC-----cEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           80 RAV-TE-----EDGHSLAEKEGL-----SFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        80 ~~~-~~-----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      -.+ ..     ....+++ ..|+     .++.+|. ..+.|-|.|..+++.+....+
T Consensus       152 ~kietqrdI~qr~~d~l~-d~gle~v~vsf~LTSI-yDHSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDELA-DAGLEKVQVSFYLTSI-YDHSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             hhhhhHHHHHHHhhHHHH-hhhhccceEEEEEeee-cchHHHHHHHHHHHHHhhhch
Confidence            111 11     1112222 2232     3444444 557899999988887776544

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.49  E-value=0.0014  Score=46.21  Aligned_cols=86  Identities=27%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      ..+.+.++|+++....  .....+..+|.+++++..+. .++..+..++..+...   +.|+.+|+||.|...   ....
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            5678999999976432  23355788999999998863 3555566666555433   467889999998632   1244


Q ss_pred             HHHHHHHHcCCcEEE
Q 031238           86 DGHSLAEKEGLSFLE  100 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~  100 (163)
                      +.+++.+..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            566677777876653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.46  E-value=0.00039  Score=48.35  Aligned_cols=63  Identities=21%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             EEEEEeCCChhh----HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            9 KAQIWDTAGQER----YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         9 ~l~l~Dt~G~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      .+.|+||||...    ...++..++..+|++|+|.++++..+-.+...+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            478999999743    2356778889999999999999864444444444444333   34488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.41  E-value=0.0022  Score=51.26  Aligned_cols=108  Identities=21%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             cCEEEEEEEEeCCChhhHhhh-----------------------------hhhhhc-CCcEEEEEE-ECC--C--hhHHH
Q 031238            4 EGKTVKAQIWDTAGQERYRAI-----------------------------TSAYYR-GAVGALLVY-DIT--K--RQTFD   48 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~--~--~~s~~   48 (163)
                      ++-...+.|.||+|.+.-..+                             .+..+. .+++.|+|. |.+  +  ++.+.
T Consensus        87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~  166 (492)
T TIGR02836        87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV  166 (492)
T ss_pred             CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence            445567899999986431110                             233455 899999998 664  1  12232


Q ss_pred             HH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC--CCCCHHHHHHHH
Q 031238           49 NV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL--EATNVEKAFQTI  116 (163)
Q Consensus        49 ~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l  116 (163)
                      +. ..++.+++..   ++|+++|.|+.|...  ....+....+..+++.+++.+|+.  +...|..+|+.+
T Consensus       167 ~aEe~~i~eLk~~---~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       167 EAEERVIEELKEL---NKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             HHHHHHHHHHHhc---CCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence            32 4666666554   689999999999421  113344455666667777776663  333444444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.00028  Score=53.88  Aligned_cols=103  Identities=21%  Similarity=0.223  Sum_probs=65.9

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcC---CcEEEEEEECCC----hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            9 KAQIWDTAGQERYRAITSAYYRG---AVGALLVYDITK----RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~---~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ++.|.|.||++-....   .+.+   .|+.++++..+.    ++.-+.+.-  .++.    .-+.++++-||.||....+
T Consensus       126 HVSfVDCPGHDiLMaT---MLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM----~LkhiiilQNKiDli~e~~  196 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMAT---MLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM----KLKHIIILQNKIDLIKESQ  196 (466)
T ss_pred             EEEeccCCchHHHHHH---HhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh----hhceEEEEechhhhhhHHH
Confidence            5689999999865432   2333   477788876653    344333321  1111    1368999999999965332


Q ss_pred             C--CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 V--TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .  ..++++.|....   +.+++++||.-..||+.+.+.++..+
T Consensus       197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            2  134455555443   46899999999999998877766554

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.29  E-value=0.00065  Score=48.61  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=65.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.|++++|.--  ..-. +.-..+.-|+|+|++.++...         ++..+ --.-=++|+||.||...-..+.+.
T Consensus        97 ~Dll~iEs~GNL~--~~~s-p~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlev  164 (202)
T COG0378          97 LDLLFIESVGNLV--CPFS-PDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEV  164 (202)
T ss_pred             CCEEEEecCccee--cccC-cchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence            5667778777211  1111 111234789999998764421         11011 001337899999997655566677


Q ss_pred             HHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           87 GHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        87 ~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+.+++.+  .+++++|+++|+|++++++++....
T Consensus       165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            777777664  6899999999999999998887653

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.29  E-value=0.00035  Score=51.41  Aligned_cols=124  Identities=14%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGN   72 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~n   72 (163)
                      +-.++.+.+.|.+|++..+.-|-+.+.++-.++|++.++          +...+++.+-++.-+..+.= .+.++|++.|
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN  274 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  274 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence            344566789999999988888888888887777776553          33345555566666665532 4689999999


Q ss_pred             CCCCccccc----------------CCHHHHHHHHHH----cC------CcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           73 KSDLNHLRA----------------VTEEDGHSLAEK----EG------LSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        73 K~Dl~~~~~----------------~~~~~~~~~~~~----~~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      |.|+.+.+.                .......+++-+    .+      +...+++|.+.+||.-+|..+.+.+++...+
T Consensus       275 KkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~Lk  354 (359)
T KOG0085|consen  275 KKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  354 (359)
T ss_pred             hhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhH
Confidence            999843211                111222233222    12      2356889999999999999999999887655


Q ss_pred             h
Q 031238          127 K  127 (163)
Q Consensus       127 ~  127 (163)
                      .
T Consensus       355 E  355 (359)
T KOG0085|consen  355 E  355 (359)
T ss_pred             h
Confidence            3

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.26  E-value=0.0022  Score=49.42  Aligned_cols=72  Identities=13%  Similarity=0.011  Sum_probs=41.3

Q ss_pred             EEEEEEEeCCChhhHhhh-------hhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAI-------TSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~-------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D   75 (163)
                      ...+.+|||||..+....       ...++  .+.|+++||..++.....+.-...+..+....+  --.++||+.|+.|
T Consensus        85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            357899999997653221       11112  268999999766532111111233444444333  1257899999999


Q ss_pred             Ccc
Q 031238           76 LNH   78 (163)
Q Consensus        76 l~~   78 (163)
                      ...
T Consensus       165 ~~~  167 (313)
T TIGR00991       165 FSP  167 (313)
T ss_pred             cCC
Confidence            653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.13  E-value=0.0025  Score=52.75  Aligned_cols=66  Identities=24%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.+.++||||+.+|.-..+..++--|+.|+++|+..+..-...--| .++.++   ++|-+.++||.|.
T Consensus       103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry---~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY---NVPRICFINKMDR  168 (721)
T ss_pred             cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc---CCCeEEEEehhhh
Confidence            57889999999999988888889999999999998765433222233 334444   6899999999995

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.11  E-value=0.0012  Score=50.30  Aligned_cols=55  Identities=18%  Similarity=0.120  Sum_probs=38.2

Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ..-++|+||+|+........+......+..  ..+++.+||++|+|+++++++|.++
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999642221223333333333  4689999999999999999998764

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.00013  Score=57.81  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .++-+.+++.++||||+.+|+...+..++--|+++.|||.+-+..-..+--|.+.    .+.++|-..+.||+|..
T Consensus        96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen   96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKL  167 (753)
T ss_pred             ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhh
Confidence            4567788999999999999998888999999999999999876555555556443    22468889999999963

>PTZ00258 GTP-binding protein; Provisional

Probab=96.96  E-value=0.0088  Score=47.62  Aligned_cols=44  Identities=14%  Similarity=-0.016  Sum_probs=28.7

Q ss_pred             CCeEEEEeeCC--CCcccccCCHHHHHHHHHHc-CCcEEEeccCCCC
Q 031238           64 NIVIMMAGNKS--DLNHLRAVTEEDGHSLAEKE-GLSFLETSALEAT  107 (163)
Q Consensus        64 ~~piivv~nK~--Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~  107 (163)
                      .+|+++|+|+.  |+.....-..+.+..++... +.+++.+||+...
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            48999999999  76211111234556666666 4789999986543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.88  E-value=0.0024  Score=45.11  Aligned_cols=44  Identities=20%  Similarity=0.053  Sum_probs=27.3

Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238           33 VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus        33 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      |++++|+|+.++.+-.. ..+...+. ....++|+|+|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987632211 11222211 1123589999999999953

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.83  E-value=0.0032  Score=51.14  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             hHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH---HHHHHc
Q 031238           20 RYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH---SLAEKE   94 (163)
Q Consensus        20 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~   94 (163)
                      -++.+|+- +..+|+||.++|+.++--|.  ++..++.++   .+ .+-.++++||.||..     .++..   .+....
T Consensus       164 ~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~---d~-~K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~  233 (562)
T KOG1424|consen  164 IWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEV---DP-SKANVLLVNKADLLP-----PEQRVAWAEYFRQN  233 (562)
T ss_pred             HHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhcc---cc-ccceEEEEehhhcCC-----HHHHHHHHHHHHhc
Confidence            35566654 78899999999999985542  333444333   22 366789999999963     33433   345566


Q ss_pred             CCcEEEeccCC
Q 031238           95 GLSFLETSALE  105 (163)
Q Consensus        95 ~~~~~~~Sa~~  105 (163)
                      ++++++-||..
T Consensus       234 ni~~vf~SA~~  244 (562)
T KOG1424|consen  234 NIPVVFFSALA  244 (562)
T ss_pred             CceEEEEeccc
Confidence            78999999976

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.011  Score=46.73  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             EEEEEeCCChhhHhhhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC----
Q 031238            9 KAQIWDTAGQERYRAITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV----   82 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~----   82 (163)
                      .+.|+|.+|+.+|....-.-+.  ..|...+|++++..-.+. .+..+-.+...   ++|++++++|.|+.+...+    
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv  325 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTV  325 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHH
Confidence            5689999999998764433332  257788888887653321 12223333322   6999999999998542111    


Q ss_pred             --------------------CHHHH----HHHHHHcCCcEEEeccCCCCCHHHH
Q 031238           83 --------------------TEEDG----HSLAEKEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        83 --------------------~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~  112 (163)
                                          +..+.    ++.+...=.++|.+|+.+|+|++-+
T Consensus       326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                                11111    1211111137899999999997654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.65  E-value=0.0083  Score=46.69  Aligned_cols=89  Identities=22%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             EEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---CHHHHH
Q 031238           12 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---TEEDGH   88 (163)
Q Consensus        12 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~   88 (163)
                      =.|.||+-+|-+..-.=-..-|+.|+|+.++|.. +.+.+..+...++..  =..++|+.||.|+.++.+.   -+-+++
T Consensus       121 H~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~R  197 (449)
T KOG0460|consen  121 HTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIR  197 (449)
T ss_pred             cCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHH
Confidence            4689999888443222245679999999999852 223333333233332  2468899999999743332   123456


Q ss_pred             HHHHHcCC-----cEEEecc
Q 031238           89 SLAEKEGL-----SFLETSA  103 (163)
Q Consensus        89 ~~~~~~~~-----~~~~~Sa  103 (163)
                      ++...+|+     +++.-||
T Consensus       198 ElLse~gf~Gd~~PvI~GSA  217 (449)
T KOG0460|consen  198 ELLSEFGFDGDNTPVIRGSA  217 (449)
T ss_pred             HHHHHcCCCCCCCCeeecch
Confidence            67777765     5776655

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.0051  Score=52.17  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=48.9

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HHHHHH-HHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FDNVLR-WLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.+.+.|+|+||+.+|.+......+=+|+.++++|+..+..   ..-+++ |.+        +..+++|+||+|.
T Consensus        69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidr  136 (887)
T KOG0467|consen   69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDR  136 (887)
T ss_pred             cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhh
Confidence            466788999999999999998888999999999999976533   222222 222        3556789999993

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.63  E-value=0.0022  Score=48.02  Aligned_cols=105  Identities=20%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             EEEEEEeCCC--hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            8 VKAQIWDTAG--QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         8 ~~l~l~Dt~G--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      +.+.|.+|.|  |.+.     ....-+|.+++|.-+.-.++++.++.-+-++        .=++|+||.|...... ...
T Consensus       122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~-~~~  187 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADR-TVR  187 (266)
T ss_dssp             -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH-HHH
T ss_pred             CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHH-HHH
Confidence            3466777755  4432     2355689999999887665555443322222        2278999999643222 122


Q ss_pred             HHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           86 DGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        86 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      +.+.....       +..+++.+||.++.|++++++.+.+..-.....
T Consensus       188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s  235 (266)
T PF03308_consen  188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES  235 (266)
T ss_dssp             HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            22222211       234799999999999999999998765555444

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.48  E-value=0.026  Score=41.06  Aligned_cols=112  Identities=19%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             EEEEEEeCCChhhH--------hhh---hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQERY--------RAI---TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS--NIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~--------~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~   74 (163)
                      ..+.++||||..+.        ..+   ......+.+++++|++++.. +-.+ ...+..+....+.  -..++||.|..
T Consensus        49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~  126 (212)
T PF04548_consen   49 RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHA  126 (212)
T ss_dssp             EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred             eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhc
Confidence            35789999995321        111   11234578999999999832 2111 2223333333331  24688899988


Q ss_pred             CCcccccCC-------HHHHHHHHHHcCCcEEEeccC------CCCCHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVT-------EEDGHSLAEKEGLSFLETSAL------EATNVEKAFQTILTEIY  121 (163)
Q Consensus        75 Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~------~~~~i~~~~~~l~~~~~  121 (163)
                      |-.....+.       ....+.+.+..+-.|+..+.+      ....+.++|+.+-+.+.
T Consensus       127 d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~  186 (212)
T PF04548_consen  127 DELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ  186 (212)
T ss_dssp             GGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHH
Confidence            854433311       122445666667778877766      22234555554444443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.43  E-value=0.014  Score=43.77  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=40.1

Q ss_pred             EEEEEEeCCChhhHhh----------hhhhhhc--CCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCC--CCeEEEEee
Q 031238            8 VKAQIWDTAGQERYRA----------ITSAYYR--GAVGALLVYDITKRQ-TFDNVLRWLRELRDHADS--NIVIMMAGN   72 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----------~~~~~~~--~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piivv~n   72 (163)
                      ..+.||||||......          ....+++  ..|++++|..++... ...+ ...+..+....+.  -.++++|.|
T Consensus        79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T  157 (249)
T cd01853          79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT  157 (249)
T ss_pred             eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence            4689999999754310          1122333  578888887666431 2221 2334444433331  257999999


Q ss_pred             CCCCc
Q 031238           73 KSDLN   77 (163)
Q Consensus        73 K~Dl~   77 (163)
                      |.|..
T Consensus       158 ~~d~~  162 (249)
T cd01853         158 HAASS  162 (249)
T ss_pred             CCccC
Confidence            99974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.39  E-value=0.015  Score=45.22  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCCh-hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH
Q 031238           15 TAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK   93 (163)
Q Consensus        15 t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~   93 (163)
                      .+|+ .++.......+..+|+++.|+|+-++.+...     ..+.+... ++|.++|+||.||..... ..+-.+.+.+.
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~   89 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKE   89 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence            3555 3455667778999999999999998765321     11122222 456699999999964222 22223333344


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHH
Q 031238           94 EGLSFLETSALEATNVEKAFQTI  116 (163)
Q Consensus        94 ~~~~~~~~Sa~~~~~i~~~~~~l  116 (163)
                      .+...+.+++.++.+...+...+
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~~  112 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKAL  112 (322)
T ss_pred             CCCccEEEEeecccCccchHHHH
Confidence            46678888998888877666433

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.35  E-value=0.027  Score=43.08  Aligned_cols=109  Identities=17%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      -.+.+.|.+|.|-=...   -....-+|.+++|.-..-.+.++.++.-+-++        -=|+|+||.|......-..+
T Consensus       142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~  210 (323)
T COG1703         142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAARE  210 (323)
T ss_pred             cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHH
Confidence            34567788887632111   12455689999998666555665554433332        22789999996432111111


Q ss_pred             H--HHHHHH------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           86 D--GHSLAE------KEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        86 ~--~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      .  ...+..      .+.-+++.+||.+++|++++++.+.+...-...
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence            1  111111      122479999999999999999999987655543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.026  Score=42.23  Aligned_cols=90  Identities=18%  Similarity=0.351  Sum_probs=60.4

Q ss_pred             hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc---------------------------cc
Q 031238           29 YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNH---------------------------LR   80 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~---------------------------~~   80 (163)
                      .....++++|||++....+..+..|+....-.   .+. ++.+|||.|...                           +.
T Consensus        76 a~pl~a~vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~df  152 (418)
T KOG4273|consen   76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDF  152 (418)
T ss_pred             ccceeeEEEEEeccchhhhHHHHhhccccccc---cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhc
Confidence            34567899999999888888899998754322   233 366999999520                           01


Q ss_pred             cC-----------------CHHHHHHHHHHcCCcEEEeccC------------CCCCHHHHHHHHHHHHH
Q 031238           81 AV-----------------TEEDGHSLAEKEGLSFLETSAL------------EATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~-----------------~~~~~~~~~~~~~~~~~~~Sa~------------~~~~i~~~~~~l~~~~~  121 (163)
                      .+                 ..-...+++.++++.+++.++.            +..|++.+|.++-..+.
T Consensus       153 gisetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  153 GISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence            00                 0112467888899999999883            23468888887765544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.19  E-value=0.04  Score=41.83  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             EEEEEEEeCCChhhHhhhh----hh---hh-----cCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            7 TVKAQIWDTAGQERYRAIT----SA---YY-----RGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~----~~---~~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.+.|+||+|....+...    ..   ..     ..+|.+++|+|++.. +.+...    ..+.+..+   +--+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~~---~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAVG---LTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhCC---CCEEEEEc
Confidence            4678999999975432211    11   11     238999999999854 233332    22222211   34678999


Q ss_pred             CCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238           74 SDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        74 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                      .|-...    .-.+.......++++..++  +|++++++-.
T Consensus       227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence            996321    1223344455678888877  6888776643

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=95.99  E-value=0.078  Score=39.30  Aligned_cols=62  Identities=26%  Similarity=0.312  Sum_probs=39.9

Q ss_pred             EEEEEEeC-CChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCC-CeEEEEeeCCCC
Q 031238            8 VKAQIWDT-AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN-IVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt-~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piivv~nK~Dl   76 (163)
                      ..+.+.|| +|.+.+.   +...+++|.+|+|.|.+-. ++..... +.++...  -+ +++.+|+||.|-
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~e--lg~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAEE--LGIKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHH--hCCceEEEEEeeccc
Confidence            45778887 5665543   5668899999999998642 3332222 1222111  13 799999999983

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=95.96  E-value=0.016  Score=44.91  Aligned_cols=104  Identities=20%  Similarity=0.097  Sum_probs=62.8

Q ss_pred             EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe----EEEEeeCCC
Q 031238            9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV----IMMAGNKSD   75 (163)
Q Consensus         9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iivv~nK~D   75 (163)
                      .+-+.||-|.-.         |.... .....+|.++.|.|+++|+.-.....-+.-+....-.+.|    ++=|-||.|
T Consensus       227 ~vlltDTvGFisdLP~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD  305 (410)
T KOG0410|consen  227 FVLLTDTVGFISDLPIQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID  305 (410)
T ss_pred             EEEEeechhhhhhCcHHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence            356789998632         33333 3367899999999999986533322222222211111122    455778888


Q ss_pred             CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ........        +..+  .+.+||.+|+|.+++.+.+-..+.+.
T Consensus       306 ~e~~~~e~--------E~n~--~v~isaltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  306 YEEDEVEE--------EKNL--DVGISALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cccccCcc--------ccCC--ccccccccCccHHHHHHHHHHHhhhh
Confidence            75322211        1112  68899999999999988877766554

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.059  Score=45.46  Aligned_cols=93  Identities=16%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             EEEEEeCCChh---hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            9 KAQIWDTAGQE---RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         9 ~l~l~Dt~G~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.|.||.+   ........+..++|++|+|..+.+.....+ ++++..   ....+..|+++.||+|.....+.-.+
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~---vs~~KpniFIlnnkwDasase~ec~e  282 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHK---VSEEKPNIFILNNKWDASASEPECKE  282 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHH---hhccCCcEEEEechhhhhcccHHHHH
Confidence            45788999975   345556677889999999998877544332 233333   33334567888899997543332223


Q ss_pred             HHHHHHHHcC--------CcEEEeccCC
Q 031238           86 DGHSLAEKEG--------LSFLETSALE  105 (163)
Q Consensus        86 ~~~~~~~~~~--------~~~~~~Sa~~  105 (163)
                      .+..-....+        -.++++||+.
T Consensus       283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  283 DVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            3322222221        2478888644

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.80  E-value=0.21  Score=35.26  Aligned_cols=89  Identities=11%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238           31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVE  110 (163)
Q Consensus        31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  110 (163)
                      ..|.|+|++|.+...|+..+..-+..+.....-++- .++++.....+...+..+.+.+++..+.++++.+.-...++..
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKV-Cfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKV-CFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccce-EEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            479999999999999998887666665433333333 4455555555556778899999999999999998887776666


Q ss_pred             HHHHHHHHHH
Q 031238          111 KAFQTILTEI  120 (163)
Q Consensus       111 ~~~~~l~~~~  120 (163)
                      .+-+.|++.+
T Consensus       143 ~lAqRLL~~l  152 (176)
T PF11111_consen  143 SLAQRLLRML  152 (176)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=95.76  E-value=0.18  Score=37.95  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=37.4

Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ++.+.|.||+|.     ++.++...++++.+  .+.+|+....|++.+++.+.+.+.
T Consensus       239 ~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  239 IKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence            556677777764     56778888887655  466788888899999999988653

>PHA02518 ParA-like protein; Provisional

Probab=95.74  E-value=0.094  Score=37.66  Aligned_cols=66  Identities=12%  Similarity=0.075  Sum_probs=41.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIV-IMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D   75 (163)
                      .+.+.|+|++|..  .......+..+|.+|++...+..  .....+..++..+..... +.| +.++.|+.+
T Consensus        76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~  144 (211)
T PHA02518         76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAI  144 (211)
T ss_pred             cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccC
Confidence            4678999999874  34456778899999999987632  223334444444333222 344 445667764

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.69  E-value=0.03  Score=44.33  Aligned_cols=82  Identities=17%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             hhhHhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHH---HH
Q 031238           18 QERYRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSL---AE   92 (163)
Q Consensus        18 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~   92 (163)
                      ...|.......+..+|+||.|.|+.||.+-  .++..|+..   . ..++..|+|.||.||..     .+....|   .+
T Consensus       133 ~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~---~-~gnKkLILVLNK~DLVP-----rEv~e~Wl~YLr  203 (435)
T KOG2484|consen  133 KKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ---A-HGNKKLILVLNKIDLVP-----REVVEKWLVYLR  203 (435)
T ss_pred             HHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh---c-cCCceEEEEeehhccCC-----HHHHHHHHHHHH
Confidence            344555566678889999999999998542  233344322   1 23488999999999953     3444444   34


Q ss_pred             HcCCcEEEeccCCCCC
Q 031238           93 KEGLSFLETSALEATN  108 (163)
Q Consensus        93 ~~~~~~~~~Sa~~~~~  108 (163)
                      ..+..+.+..+....+
T Consensus       204 ~~~ptv~fkast~~~~  219 (435)
T KOG2484|consen  204 REGPTVAFKASTQMQN  219 (435)
T ss_pred             hhCCcceeeccccccc
Confidence            4444555554444433

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=0.027  Score=46.15  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=48.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      ++..+-+.++|.||+.+|.+.....++=.|+.++|+|.-++.....---+.+.+-+.   -+| +++.||.|.
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkP-vlv~NK~DR  162 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKP-VLVMNKMDR  162 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccc-eEEeehhhH
Confidence            455678899999999999999889999999999999998764432211122222111   244 578999994

>PRK14974 cell division protein FtsY; Provisional

Probab=95.50  E-value=0.11  Score=40.72  Aligned_cols=101  Identities=14%  Similarity=-0.021  Sum_probs=56.7

Q ss_pred             EEEEEEeCCChhhHh----hhhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            8 VKAQIWDTAGQERYR----AITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      +.+.|+||+|.....    ......  ..+.|.+++|.|++.+....+....+..   ..   ..--+|.||.|....-.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~---~~---~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE---AV---GIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh---cC---CCCEEEEeeecCCCCcc
Confidence            468999999975321    111222  2357899999999865432222222221   11   12357899999632111


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                          .+...+...+.++..++  +|++++++...=.+.+
T Consensus       297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~~  329 (336)
T PRK14974        297 ----AALSIAYVIGKPILFLG--VGQGYDDLIPFDPDWF  329 (336)
T ss_pred             ----HHHHHHHHHCcCEEEEe--CCCChhhcccCCHHHH
Confidence                22333444578888877  6899887754333333

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.42  E-value=0.087  Score=35.66  Aligned_cols=65  Identities=11%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      +.+.++|+++...  ......+..+|.++++.+.+ ..++......+..+..... ..++.+|.|+.+.
T Consensus        45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR-VLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCC
Confidence            4678999987543  23346788999999999875 3345444444444443332 4577889999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=95.39  E-value=0.083  Score=39.96  Aligned_cols=95  Identities=14%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             cCCcEEEEEEECCC-----hh--HHH----HHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-----CCHHHHHHHHHH
Q 031238           30 RGAVGALLVYDITK-----RQ--TFD----NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-----VTEEDGHSLAEK   93 (163)
Q Consensus        30 ~~~d~ii~v~d~~~-----~~--s~~----~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~   93 (163)
                      +..+|||+++|+.+     ..  .+.    .++.-+.++....+..+||++|+||+|+...-.     .+.++   ...-
T Consensus        24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~---r~q~  100 (266)
T PF14331_consen   24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEE---REQV  100 (266)
T ss_pred             CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHH---HhCC
Confidence            35699999999853     11  122    233445555555556899999999999864211     11111   1122


Q ss_pred             cCCcEEEeccCCCCC---HHHHHHHHHHHHHHHHhHh
Q 031238           94 EGLSFLETSALEATN---VEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        94 ~~~~~~~~Sa~~~~~---i~~~~~~l~~~~~~~~~~~  127 (163)
                      +|+.+-.-.......   +++.|+.+...+......+
T Consensus       101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  137 (266)
T PF14331_consen  101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLER  137 (266)
T ss_pred             cccccCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            343221112223333   6777777777766665443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=95.31  E-value=0.15  Score=46.30  Aligned_cols=68  Identities=21%  Similarity=0.262  Sum_probs=45.0

Q ss_pred             EEEEeCCChh--------hHhhhhhhhh---------cCCcEEEEEEECCCh-----hHH----HHHHHHHHHHHhhcCC
Q 031238           10 AQIWDTAGQE--------RYRAITSAYY---------RGAVGALLVYDITKR-----QTF----DNVLRWLRELRDHADS   63 (163)
Q Consensus        10 l~l~Dt~G~~--------~~~~~~~~~~---------~~~d~ii~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~   63 (163)
                      -.++||+|.-        .....|..++         +..+|||+++|+.+-     +..    ..++..+.++....+.
T Consensus       163 avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~  242 (1169)
T TIGR03348       163 AVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA  242 (1169)
T ss_pred             EEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4689999932        1122233332         458999999998652     111    2345566666666666


Q ss_pred             CCeEEEEeeCCCCc
Q 031238           64 NIVIMMAGNKSDLN   77 (163)
Q Consensus        64 ~~piivv~nK~Dl~   77 (163)
                      .+||+|++||+|+.
T Consensus       243 ~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       243 RFPVYLVLTKADLL  256 (1169)
T ss_pred             CCCEEEEEecchhh
Confidence            89999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.29  E-value=0.14  Score=39.84  Aligned_cols=96  Identities=17%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             EEEEEEEEeCCChhhH--------hhhhhh---h-hcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEee
Q 031238            6 KTVKAQIWDTAGQERY--------RAITSA---Y-YRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGN   72 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~--------~~~~~~---~-~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~n   72 (163)
                      ..+.+.|+||+|....        ..+.+.   . -...+..++|.|++... .+..+    ..+....   .+.-+|.|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEEE
Confidence            3467899999997432        111111   0 12467889999998542 33332    2222111   23467899


Q ss_pred             CCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238           73 KSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        73 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                      |.|-...    .-.+.......++++..++  +|++++++-.
T Consensus       268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            9995321    1123445556688888888  6888877643

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=95.19  E-value=0.68  Score=38.73  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=60.4

Q ss_pred             EEEEEeCCCh-------------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHH-HhhcCCCCeEEEEeeCC
Q 031238            9 KAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSNIVIMMAGNKS   74 (163)
Q Consensus         9 ~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~   74 (163)
                      ...+.|.||-             +....+...+..+.+++|+|+---   |.+.-+.....+ ....+.+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            4578899884             334556778899999999998211   222222112222 22234578889999999


Q ss_pred             CCcccccCCHHHHHHHHHHcC-----CcEEEeccCCC
Q 031238           75 DLNHLRAVTEEDGHSLAEKEG-----LSFLETSALEA  106 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~  106 (163)
                      ||.+....+...++.+....-     +.||.+-.-.|
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            997766667777877766542     34777655444

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.10  E-value=0.037  Score=43.72  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             EEEEEeCCChhh-----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++.+.||||.-.           |....+-+..++|.||++||+-.-+--++....+..++   +..=.+=||.||.|..
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~EdkiRVVLNKADqV  224 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHEDKIRVVLNKADQV  224 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcceeEEEecccccc
Confidence            568999999422           34455567889999999999864222222222233332   2223456789999986


Q ss_pred             cccc
Q 031238           78 HLRA   81 (163)
Q Consensus        78 ~~~~   81 (163)
                      +..+
T Consensus       225 dtqq  228 (532)
T KOG1954|consen  225 DTQQ  228 (532)
T ss_pred             CHHH
Confidence            5433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=95.03  E-value=0.57  Score=37.13  Aligned_cols=41  Identities=15%  Similarity=0.059  Sum_probs=27.8

Q ss_pred             CeEEEEeeCCCCcc-cccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238           65 IVIMMAGNKSDLNH-LRAVTEEDGHSLAEKEGLSFLETSALE  105 (163)
Q Consensus        65 ~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  105 (163)
                      +|+++++|+.|..- ......+.+.+++...+.+++.+||.-
T Consensus       200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~  241 (364)
T PRK09601        200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI  241 (364)
T ss_pred             CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            99999999988421 111123555666666788899999844

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=94.83  E-value=0.24  Score=39.30  Aligned_cols=105  Identities=13%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             EEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCC--c---
Q 031238            9 KAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDL--N---   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl--~---   77 (163)
                      .+.+||.||--.-     ..+...-+...|.+|++.+-.    |.+.. .+...+.+.   ++|+++|-+|.|.  .   
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~  159 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER  159 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence            4789999995221     112233466789888876532    33333 233333333   6899999999995  1   


Q ss_pred             --ccccCCHH----HHHHHHHH----cCC---cEEEeccCCCC--CHHHHHHHHHHHH
Q 031238           78 --HLRAVTEE----DGHSLAEK----EGL---SFLETSALEAT--NVEKAFQTILTEI  120 (163)
Q Consensus        78 --~~~~~~~~----~~~~~~~~----~~~---~~~~~Sa~~~~--~i~~~~~~l~~~~  120 (163)
                        ..+....+    ++++.+..    .|.   ++|.+|..+-.  +...+.+.|.+.+
T Consensus       160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence              11222222    22333222    233   58888886644  3555655555433

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=94.52  E-value=0.67  Score=32.14  Aligned_cols=84  Identities=15%  Similarity=0.023  Sum_probs=50.3

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGH   88 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~   88 (163)
                      .+.++|+++.....  ....+..+|.+|++.+.+. .++..+..++..+... + ...+.+|.|+.+...  ....+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~-~~~~~iv~N~~~~~~--~~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-G-IKVVGVIVNRVRPDM--VEGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-C-CceEEEEEeCCcccc--cchhhHHH
Confidence            57899998764332  3345788999999998753 3455555555554432 1 235678999997532  12222234


Q ss_pred             HHHHHcCCcEE
Q 031238           89 SLAEKEGLSFL   99 (163)
Q Consensus        89 ~~~~~~~~~~~   99 (163)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            45555566554

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=94.19  E-value=0.28  Score=39.66  Aligned_cols=64  Identities=17%  Similarity=0.034  Sum_probs=37.9

Q ss_pred             EEEEEEEeCCChhhHhh----hhhh--hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRA----ITSA--YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.+.|+||+|......    ....  .....+-+++|+|++.+....+....|.   +.   -.+--+|.||.|-
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~---~~---~~~~g~IlTKlD~  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK---DS---VDVGSVIITKLDG  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH---hc---cCCcEEEEECccC
Confidence            46789999999753321    1111  1235788999999986543333222222   11   1245678999996

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=93.89  E-value=0.49  Score=30.41  Aligned_cols=62  Identities=21%  Similarity=0.082  Sum_probs=40.0

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC-CCeEEEEeeC
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK   73 (163)
                      .+.+.|+++....  .....+..+|.++++.+.+ ..++..+..+...+...... ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4689999886543  2345678899999998764 44555666666655544332 3456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=93.79  E-value=0.85  Score=33.53  Aligned_cols=65  Identities=15%  Similarity=0.030  Sum_probs=41.9

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.++|+++..  .......+..+|.+|++...+ ..++..+...+..+........++-+|.|+.|.
T Consensus       116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~  180 (246)
T TIGR03371       116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP  180 (246)
T ss_pred             CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence            68999999853  334556778999999999875 344545542233333221224557789999985

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>TIGR00959 ffh signal recognition particle protein

Probab=93.75  E-value=0.33  Score=39.35  Aligned_cols=87  Identities=17%  Similarity=0.075  Sum_probs=47.5

Q ss_pred             EEEEEEEeCCChhhHhh----hhhh--hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            7 TVKAQIWDTAGQERYRA----ITSA--YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+.|.||+|....+.    ....  ..-..+.+++|+|++.....   ..+...+....+   ..=+|.||.|-..  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~---~~~a~~f~~~v~---i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA---VNTAKTFNERLG---LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHH---HHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence            45789999999632211    0111  12357889999999865332   222233322211   2246789999421  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEecc
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                        ..-.+.......++|+.++..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              111245566666777666654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=93.65  E-value=0.33  Score=38.85  Aligned_cols=94  Identities=17%  Similarity=0.085  Sum_probs=52.6

Q ss_pred             hcCCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCC
Q 031238           29 YRGAVGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA  106 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  106 (163)
                      +..+|++|-|+|+.||.-  -..+.   ..+++..+ -+.+|.|+||+||.... +...=..-+.+.+.---|..|....
T Consensus       211 iDSSDVvvqVlDARDPmGTrc~~ve---~ylkke~p-hKHli~vLNKvDLVPtw-vt~~Wv~~lSkeyPTiAfHAsi~ns  285 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRCKHVE---EYLKKEKP-HKHLIYVLNKVDLVPTW-VTAKWVRHLSKEYPTIAFHASINNS  285 (572)
T ss_pred             hcccceeEEeeeccCCcccccHHHH---HHHhhcCC-cceeEEEeeccccccHH-HHHHHHHHHhhhCcceeeehhhcCc
Confidence            446899999999999742  12222   22333333 47899999999995321 1111222333333322244455555


Q ss_pred             CCHHHHHHHHHHHHHHHHhHhH
Q 031238          107 TNVEKAFQTILTEIYHIISKKA  128 (163)
Q Consensus       107 ~~i~~~~~~l~~~~~~~~~~~~  128 (163)
                      .|- -.+-.|++++-..+..+.
T Consensus       286 fGK-galI~llRQf~kLh~dkk  306 (572)
T KOG2423|consen  286 FGK-GALIQLLRQFAKLHSDKK  306 (572)
T ss_pred             cch-hHHHHHHHHHHhhccCcc
Confidence            563 444556677777765543

>cd03112 CobW_like The function of this protein family is unkown

Probab=93.60  E-value=0.21  Score=34.61  Aligned_cols=64  Identities=14%  Similarity=0.078  Sum_probs=36.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhh--------hhcCCcEEEEEEECCChhHHH-HHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSA--------YYRGAVGALLVYDITKRQTFD-NVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .....|.|++|-..-......        ..-..|++++++|+....... ....+..++. ..    . ++|.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-~a----d-~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-FA----D-RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-HC----C-EEEEecccC
Confidence            457789999997543322222        233579999999986533211 1122222222 21    2 568999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=93.60  E-value=1.8  Score=30.52  Aligned_cols=85  Identities=14%  Similarity=0.234  Sum_probs=59.9

Q ss_pred             hcCCcEEEEEEECCC----h---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEe
Q 031238           29 YRGAVGALLVYDITK----R---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET  101 (163)
Q Consensus        29 ~~~~d~ii~v~d~~~----~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  101 (163)
                      ++...+=.+++|.++    +   +-..++..|+.++++..+ ...++||-|-.-..+  +...+.++.+.+..+++++..
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h  112 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH  112 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCC-CCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence            666777778888766    1   223567889999887654 225777877653322  345677888889999999999


Q ss_pred             ccCCCCCHHHHHHHH
Q 031238          102 SALEATNVEKAFQTI  116 (163)
Q Consensus       102 Sa~~~~~i~~~~~~l  116 (163)
                      +++...+..++...+
T Consensus       113 ~~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  113 RAKKPGCFREILKYF  127 (168)
T ss_pred             CCCCCccHHHHHHHH
Confidence            999997777665544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=93.19  E-value=1.1  Score=34.07  Aligned_cols=80  Identities=24%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      ..+.+.|+|..-.  -..-..+.++|.+|+|--.|- -.+.+++..++-....   ++|..+|.||.++.      ..++
T Consensus       164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g------~s~i  231 (284)
T COG1149         164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLG------DSEI  231 (284)
T ss_pred             cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCC------chHH
Confidence            3567788764321  112346889999999976653 2344444433333222   69999999999753      2267


Q ss_pred             HHHHHHcCCcEE
Q 031238           88 HSLAEKEGLSFL   99 (163)
Q Consensus        88 ~~~~~~~~~~~~   99 (163)
                      +++++..+++++
T Consensus       232 e~~~~e~gi~il  243 (284)
T COG1149         232 EEYCEEEGIPIL  243 (284)
T ss_pred             HHHHHHcCCCee
Confidence            788888887654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=92.88  E-value=0.52  Score=36.00  Aligned_cols=66  Identities=9%  Similarity=0.102  Sum_probs=33.2

Q ss_pred             CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEe
Q 031238           31 GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLET  101 (163)
Q Consensus        31 ~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~  101 (163)
                      +.|+++|+++++.. -.-.++ ..+..+   .. .+++|-|+.|.|.....++  ....+....+..++.++..
T Consensus       113 RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~-~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  113 RVHACLYFIPPTGHGLKPLDI-EFMKRL---SK-RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             -EEEEEEEE-TTSSSS-HHHH-HHHHHH---TT-TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred             CcceEEEEEcCCCccchHHHH-HHHHHh---cc-cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence            46999999998752 221122 233333   33 4788999999997532222  1233444455667765553

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=92.68  E-value=0.65  Score=39.74  Aligned_cols=71  Identities=18%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             EEEEEEeCCChhhHh-------hh---hhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCeEEEEeeC
Q 031238            8 VKAQIWDTAGQERYR-------AI---TSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADS--NIVIMMAGNK   73 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-------~~---~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK   73 (163)
                      ..+.|+||||.....       .+   ...+++  +.|++|+|..++......+-..++..+....+.  =..+|||.|+
T Consensus       166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh  245 (763)
T TIGR00993       166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH  245 (763)
T ss_pred             ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence            468999999976421       11   122333  589999999876432222223555666555552  2568999999


Q ss_pred             CCCcc
Q 031238           74 SDLNH   78 (163)
Q Consensus        74 ~Dl~~   78 (163)
                      .|...
T Consensus       246 gD~lp  250 (763)
T TIGR00993       246 AASAP  250 (763)
T ss_pred             CccCC
Confidence            99753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=92.38  E-value=0.95  Score=36.16  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             EEEEEeCCChhhHhhhhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            9 KAQIWDTAGQERYRAITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      -+.|+|.+|+++|-...-.=  =.-.|.-.+++-++-. -+-..+..+-..+.   -.+|+++|++|+|+-.. .+..+.
T Consensus       220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa---L~VPVfvVVTKIDMCPA-NiLqEt  294 (641)
T KOG0463|consen  220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA---LHVPVFVVVTKIDMCPA-NILQET  294 (641)
T ss_pred             eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh---hcCcEEEEEEeeccCcH-HHHHHH
Confidence            35799999999885432110  1123555555555432 01111111111111   15899999999998432 222222


Q ss_pred             HHH---HHHH--------------------------cCCcEEEeccCCCCCHHHH
Q 031238           87 GHS---LAEK--------------------------EGLSFLETSALEATNVEKA  112 (163)
Q Consensus        87 ~~~---~~~~--------------------------~~~~~~~~Sa~~~~~i~~~  112 (163)
                      ++.   +.+.                          .-+++|.+|-.+|.|+.-+
T Consensus       295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL  349 (641)
T KOG0463|consen  295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL  349 (641)
T ss_pred             HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence            222   2221                          2246899999999997643

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=92.38  E-value=0.14  Score=40.86  Aligned_cols=106  Identities=19%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHH-HhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLREL-RDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      -++.+.|++|+..|-...-.=..+||.-++|.++...+   -|+.--+-.... +.....-...|+++||.|-+. -.++
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt-vnWs  235 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT-VNWS  235 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc-cCcc
Confidence            36789999999877443223345688889998874321   132211111111 111122367899999999532 1122


Q ss_pred             -------HHHHHHHHHHcCC------cEEEeccCCCCCHHHHHH
Q 031238           84 -------EEDGHSLAEKEGL------SFLETSALEATNVEKAFQ  114 (163)
Q Consensus        84 -------~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~  114 (163)
                             .+....+.+..|+      .++++|..+|.++++...
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                   2233444454443      589999999999887543

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=92.23  E-value=2  Score=29.82  Aligned_cols=89  Identities=16%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc----
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL----   79 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~----   79 (163)
                      ..+.+.+.|+++...-..  ...+  ..+|.+|++...+ +.++..+..++..+.+...  ..+-+|.|+.+....    
T Consensus        66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~~--~~~gvv~N~~~~~~~~~~~  140 (169)
T cd02037          66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVNI--PILGVVENMSYFVCPHCGK  140 (169)
T ss_pred             CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcCC--CeEEEEEcCCcccCCCCCC
Confidence            457789999998642211  1222  5789999998764 4566677777766665522  234578999874211    


Q ss_pred             -ccC-CHHHHHHHHHHcCCcEE
Q 031238           80 -RAV-TEEDGHSLAEKEGLSFL   99 (163)
Q Consensus        80 -~~~-~~~~~~~~~~~~~~~~~   99 (163)
                       ... .....+.+++..+.+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~  162 (169)
T cd02037         141 KIYIFGKGGGEKLAEELGVPLL  162 (169)
T ss_pred             cccccCCccHHHHHHHcCCCEE
Confidence             111 12345666666665543

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=92.21  E-value=1.4  Score=34.88  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=53.3

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+.++|.| + .+......++..+|-+++|++.+ -.++...++++..+++......+..+|+|+.+..
T Consensus       217 ~~~~vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~  284 (366)
T COG4963         217 SFDFVVVDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVP  284 (366)
T ss_pred             cCCeEEEcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence            4567899998 3 34555677899999999999874 3467777888888888877677888999999853

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=91.94  E-value=1.1  Score=36.54  Aligned_cols=85  Identities=18%  Similarity=0.062  Sum_probs=45.0

Q ss_pred             EEEEEeCCChhhHhhh----hh--hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            9 KAQIWDTAGQERYRAI----TS--AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .+.++||+|.......    ..  ..+..+|.+++|+|++.....   ......+....+   ..-+|.||.|-.. +  
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~a---v~~a~~F~~~l~---i~gvIlTKlD~~a-~--  247 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQA---KNQAKAFHEAVG---IGGIIITKLDGTA-K--  247 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHH---HHHHHHHHhcCC---CCEEEEecccCCC-c--
Confidence            6899999997543211    11  113468899999999865321   112222221111   2356889999521 1  


Q ss_pred             CHHHHHHHHHHcCCcEEEecc
Q 031238           83 TEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                       .=.+.......+.++.+++.
T Consensus       248 -~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 -GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             -ccHHHHHHHHHCcCEEEEec
Confidence             11223344455666655554

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=91.87  E-value=1.4  Score=34.52  Aligned_cols=93  Identities=18%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             EEEEEEEEeCCChhh--------HhhhhhhhhcCCcE-----EEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            6 KTVKAQIWDTAGQER--------YRAITSAYYRGAVG-----ALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~-----ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      +++.+.|.||+|+..        ...+. ...+..+.     ++++.|++-++ .+.+.+ .|.+.....      =+|.
T Consensus       220 r~~DvvliDTAGRLhnk~nLM~EL~KI~-rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~l~------GiIl  291 (340)
T COG0552         220 RGIDVVLIDTAGRLHNKKNLMDELKKIV-RVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVGLD------GIIL  291 (340)
T ss_pred             cCCCEEEEeCcccccCchhHHHHHHHHH-HHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcCCc------eEEE
Confidence            356789999999732        12222 22333333     88888998654 454443 344433221      3688


Q ss_pred             eCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238           72 NKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        72 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  112 (163)
                      ||.|-...--+    +..++..+++|+.++-.  |++++++
T Consensus       292 TKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         292 TKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             EecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence            99995322222    12355667888777765  6677766

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=91.77  E-value=0.2  Score=38.11  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             EEEEEeCCCh----------hhHhhhhhhhhcCC---cEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            9 KAQIWDTAGQ----------ERYRAITSAYYRGA---VGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G~----------~~~~~~~~~~~~~~---d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.+.|.+|.          .++..+...|+..-   --+++++|++-+  ........|+.+      .++|+.+|.||
T Consensus       184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK  257 (320)
T KOG2486|consen  184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTK  257 (320)
T ss_pred             eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeeh
Confidence            5677899981          33445555555433   234455566543  122233345433      37999999999


Q ss_pred             CCCccc------ccCC-HHH-HHHHHHH---cCCcEEEeccCCCCCHHHHHHHHH
Q 031238           74 SDLNHL------RAVT-EED-GHSLAEK---EGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        74 ~Dl~~~------~~~~-~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      +|...+      ++.. ... .+.+.+.   -.++++.+|+.++.|+++++-.+.
T Consensus       258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~  312 (320)
T KOG2486|consen  258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA  312 (320)
T ss_pred             hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence            996321      1111 111 1112111   134788999999999998865544

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=91.73  E-value=2.2  Score=30.86  Aligned_cols=89  Identities=12%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhh-hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCC-eEEEEeeCCCCcccccCC
Q 031238            7 TVKAQIWDTAGQERYRAITSA-YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNI-VIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~-piivv~nK~Dl~~~~~~~   83 (163)
                      .+.+.++|++|.......... ..+.+|.++++++.+ ..++..+...+..+..... .+. ...++.|+.+..    ..
T Consensus       116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~  190 (212)
T cd02117         116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RE  190 (212)
T ss_pred             CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cH
Confidence            478899999765432222111 123799999999774 3444444443333333322 133 345899999852    22


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 031238           84 EEDGHSLAEKEGLSFLE  100 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~  100 (163)
                      .+..+++.+.++.+++.
T Consensus       191 ~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         191 TELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHHcCCCEEE
Confidence            34556676766765443

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK10867 signal recognition particle protein; Provisional

Probab=91.45  E-value=1.4  Score=35.88  Aligned_cols=87  Identities=20%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            7 TVKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+.|+||+|....+.    ....+  .-..+.+++|.|++......+   ....+....+   ..-+|.||.|-.. +
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~---~a~~F~~~~~---i~giIlTKlD~~~-r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVN---TAKAFNEALG---LTGVILTKLDGDA-R  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHH---HHHHHHhhCC---CCEEEEeCccCcc-c
Confidence            46789999999642211    11111  225678899999876433222   2222222111   2246779999522 1


Q ss_pred             cCCHHHHHHHHHHcCCcEEEecc
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                         .-.+.......++|+.++..
T Consensus       256 ---gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               11244555666777666554

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=91.16  E-value=2.4  Score=31.83  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-cCCCCeE-EEEeeCCCCcccccCCH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-ADSNIVI-MMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~pi-ivv~nK~Dl~~~~~~~~   84 (163)
                      .+.+.|+||+|...... ....+..+|.+|++... +..++..+...+..+... .+.+.++ -+|.|+.+.       .
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~  187 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T  187 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence            57789999987643222 22346779999998865 444555554444443322 1234554 478899762       2


Q ss_pred             HHHHHHHHHcCCcEE
Q 031238           85 EDGHSLAEKEGLSFL   99 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (163)
                      +..+++.+.++.+++
T Consensus       188 ~~~~~~~~~~g~~vl  202 (270)
T PRK13185        188 DLIDKFNEAVGLKVL  202 (270)
T ss_pred             HHHHHHHHHcCCCEE
Confidence            334555566665443

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=90.91  E-value=2.2  Score=31.55  Aligned_cols=65  Identities=14%  Similarity=-0.050  Sum_probs=42.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.+.|+|+|+....  .....+..+|.+|++...+ ..++..+...+..+....  ..++.++.|+.+.
T Consensus       111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP  175 (261)
T ss_pred             hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence            367899999886432  2234567899999998774 445555555554444332  2366788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.67  E-value=3.5  Score=37.70  Aligned_cols=68  Identities=25%  Similarity=0.293  Sum_probs=43.4

Q ss_pred             EEEEeCCChh--------hHhhhhhhh---------hcCCcEEEEEEECCC-----hhHH----HHHHHHHHHHHhhcCC
Q 031238           10 AQIWDTAGQE--------RYRAITSAY---------YRGAVGALLVYDITK-----RQTF----DNVLRWLRELRDHADS   63 (163)
Q Consensus        10 l~l~Dt~G~~--------~~~~~~~~~---------~~~~d~ii~v~d~~~-----~~s~----~~~~~~~~~i~~~~~~   63 (163)
                      -.++||+|..        .....|..+         .+.-+|||+..|+.+     +...    ..++.-+.++.....-
T Consensus       176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~  255 (1188)
T COG3523         176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA  255 (1188)
T ss_pred             eEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4688998842        122233322         456799999999864     2111    1233445555555556


Q ss_pred             CCeEEEEeeCCCCc
Q 031238           64 NIVIMMAGNKSDLN   77 (163)
Q Consensus        64 ~~piivv~nK~Dl~   77 (163)
                      .+||++++||.|+.
T Consensus       256 ~~PVYl~lTk~Dll  269 (1188)
T COG3523         256 RLPVYLVLTKADLL  269 (1188)
T ss_pred             CCceEEEEeccccc
Confidence            79999999999985

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=90.55  E-value=1.7  Score=27.42  Aligned_cols=45  Identities=18%  Similarity=0.048  Sum_probs=30.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR   55 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~   55 (163)
                      +.+.++|+++.....  ....+..+|.++++.+.+ ..++..+..+++
T Consensus        40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            457899998875332  236678899999999774 445555555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.54  E-value=1  Score=36.04  Aligned_cols=54  Identities=17%  Similarity=0.175  Sum_probs=34.8

Q ss_pred             CEEEEEEEEeCCChhhHh-----hhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHH
Q 031238            5 GKTVKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELR   58 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~   58 (163)
                      .+++.+.|.||+|.....     .+.. .-.-+.|-+|+|.|++-.++.+.....++...
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v  240 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV  240 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence            456789999999975422     2211 11224799999999998776655555555443

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=90.32  E-value=2.5  Score=35.32  Aligned_cols=56  Identities=14%  Similarity=0.071  Sum_probs=36.9

Q ss_pred             CCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEec--cCCCCCHHHHHHHHHHHH
Q 031238           63 SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS--ALEATNVEKAFQTILTEI  120 (163)
Q Consensus        63 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~~~~~l~~~~  120 (163)
                      .++|++|++||.|...  +-..+.+++++++.|+++..+.  ++=|+|-.++-+.+++.+
T Consensus       371 FGvPvVVAINKFd~DT--e~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~  428 (557)
T PRK13505        371 FGVPVVVAINKFVTDT--DAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELI  428 (557)
T ss_pred             cCCCEEEEEeCCCCCC--HHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHH
Confidence            4799999999999742  1124667889999998766332  244445555555555444

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=90.28  E-value=6.1  Score=33.18  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhh---hh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            7 TVKAQIWDTAGQERYRAITSA---YY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~---~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+.+.|+||+|....+.....   .+  ......++|++.+..  ..++...+..+...    .+.-+|+||.|-..   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence            467899999996432211000   01  112356777777642  33333333333322    35568999999521   


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~  122 (163)
                       ..-.........++++..++.  |+++ +++...=...++.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt~--GQ~VPeDL~~A~~~~Lv~  537 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVTD--GQRVPDDLHRANAASLVL  537 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEeC--CCCchhhhhcCCHHHHHH
Confidence             223344455566777766664  6666 4443333334433

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=90.21  E-value=5.1  Score=28.85  Aligned_cols=91  Identities=20%  Similarity=0.118  Sum_probs=49.1

Q ss_pred             EEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            8 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      +.+.|+||+|......    ....+  ....+-+++|.+++...+ ++.+...+    ...+  . -=+|.||.|-..  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~--~-~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG--I-DGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS--T-CEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc--C-ceEEEEeecCCC--
Confidence            4689999999643211    11111  125778999999986533 33332222    2211  1 135789999421  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEK  111 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  111 (163)
                        ..-....+....+.++-.++.  |+++++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it~--Gq~V~D  181 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYITT--GQRVDD  181 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEES--SSSTTG
T ss_pred             --CcccceeHHHHhCCCeEEEEC--CCChhc
Confidence              223344566667877766664  555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>CHL00175 minD septum-site determining protein; Validated

Probab=90.14  E-value=2.5  Score=31.90  Aligned_cols=65  Identities=11%  Similarity=-0.082  Sum_probs=41.4

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.+.++|+|+....  .....+..+|.+++|.+.+ ..++..+...+..+.....  ..+-+|.|+.+.
T Consensus       126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~--~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI--YNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC--CceEEEEeccCh
Confidence            467899999986432  2334567799999998764 4455555555555544322  345678899874

>cd03114 ArgK-like The function of this protein family is unkown

Probab=89.91  E-value=1.2  Score=30.59  Aligned_cols=33  Identities=15%  Similarity=0.029  Sum_probs=24.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT   42 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   42 (163)
                      .+.+.|+||+|.....   ..++..+|-+|++...+
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe  123 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG  123 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC
Confidence            4678999999965322   34788999999998765

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=89.79  E-value=1.5  Score=30.83  Aligned_cols=67  Identities=13%  Similarity=0.038  Sum_probs=47.0

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.+.+.|+++.....  ....+..+|.+|++++.+. .++..+..+...+.........+.+|.|+.+..
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~  161 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG  161 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence            668999998865443  4557789999999999854 446666666666655532213567899999863

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=89.49  E-value=1.7  Score=34.00  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhh-----h---cCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYRAITSAY-----Y---RGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ....++++.|.-.-......+     +   -.-|++|-|+|+.+-.. ...+...+........     ++++||.|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCCC
Confidence            455677887753322222222     2   13588999999987433 2223333333333322     78999999975


Q ss_pred             cccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHH
Q 031238           79 LRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKA  112 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  112 (163)
                      ...  .+..+...+..+  .+++.++. .+....++
T Consensus       160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l  192 (323)
T COG0523         160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAEL  192 (323)
T ss_pred             HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence            443  334444555543  46777777 33343333

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=88.81  E-value=1.8  Score=32.07  Aligned_cols=67  Identities=13%  Similarity=0.116  Sum_probs=43.4

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHh---hcCCCCeEEEEeeCCC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD---HADSNIVIMMAGNKSD   75 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~D   75 (163)
                      +.+.+.|+|++|...  ......+..+|.+|+.+.++ +.++......+..+..   ..+.+.|..++.|..+
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            357899999999764  33455678899999888764 3344444333333322   2233678789999886

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=88.66  E-value=6.2  Score=27.32  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             EEEEEEEeCCChhhH-----hhhhhhh-hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            7 TVKAQIWDTAGQERY-----RAITSAY-YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~-----~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      ...+.+.|++|...+     ..+.... ....+.+++|+|+....+..   .+...+.+..+   ..-+|.||.|.... 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~---~~~~~~~~~~~---~~~viltk~D~~~~-  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---NQAKAFNEALG---ITGVILTKLDGDAR-  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH---HHHHHHHhhCC---CCEEEEECCcCCCC-
Confidence            345788999997422     2111110 12489999999987543321   22333322222   24567799996321 


Q ss_pred             cCCHHHHHHHHHHcCCcEE
Q 031238           81 AVTEEDGHSLAEKEGLSFL   99 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~   99 (163)
                         ...+...+...++++.
T Consensus       155 ---~g~~~~~~~~~~~p~~  170 (173)
T cd03115         155 ---GGAALSIRAVTGKPIK  170 (173)
T ss_pred             ---cchhhhhHHHHCcCeE
Confidence               1222335555565544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=87.97  E-value=6.6  Score=34.37  Aligned_cols=107  Identities=16%  Similarity=0.069  Sum_probs=57.6

Q ss_pred             EEEEEEeCCChhhH----hhhhhhh--hcCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            8 VKAQIWDTAGQERY----RAITSAY--YRGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~----~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      ..+.|+||+|....    .......  ....+-+++|.|++. .+.+.++...|......   + +-=+|+||.|-..  
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~---~-i~glIlTKLDEt~--  337 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE---D-VDGCIITKLDEAT--  337 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC---C-CCEEEEeccCCCC--
Confidence            46899999994221    1111111  223567889999984 44455554333322100   1 2246899999422  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~~~  124 (163)
                        ..=.+..+....++++..++.  |++| +++...-.+.+.+..
T Consensus       338 --~~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~l  378 (767)
T PRK14723        338 --HLGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRA  378 (767)
T ss_pred             --CccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHH
Confidence              122334455666777777665  7777 666444444444443

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=87.72  E-value=5.5  Score=29.81  Aligned_cols=68  Identities=19%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeE-EEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVI-MMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl   76 (163)
                      .+.+.|+||+|......+ ...+..+|.+|++...+ ..++..+...+..+.... ..+.++ .+|.|+.+.
T Consensus       115 ~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         115 EYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             cCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            467899999876432221 23477899999998764 333433333333222211 124443 468899873

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=86.77  E-value=5.2  Score=29.94  Aligned_cols=67  Identities=10%  Similarity=-0.013  Sum_probs=42.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----C--CCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----D--SNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~--~~~piivv~nK~Dl   76 (163)
                      .+.+.+.|+|+.....  ....+..+|.+|++.+++. .++..+..++..+....    +  .+.+..++.|+.|.
T Consensus       113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~  185 (270)
T PRK10818        113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (270)
T ss_pred             CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence            4788999998776433  2345788999999988753 34555554444443211    1  12345678898874

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=86.64  E-value=6.7  Score=31.16  Aligned_cols=42  Identities=12%  Similarity=0.051  Sum_probs=24.8

Q ss_pred             CCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238           31 GAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus        31 ~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++|+++|.+.++. .-+--++ ..+..+.   . .+.+|=|+.|.|+.
T Consensus       133 RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls---~-~vNlIPVI~KaD~l  175 (373)
T COG5019         133 RVHACLYFIRPTGHGLKPLDI-EAMKRLS---K-RVNLIPVIAKADTL  175 (373)
T ss_pred             ceEEEEEEecCCCCCCCHHHH-HHHHHHh---c-ccCeeeeeeccccC
Confidence            4799999998874 2221122 2233332   2 35566778899974

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=86.16  E-value=3.5  Score=29.51  Aligned_cols=67  Identities=18%  Similarity=0.109  Sum_probs=40.4

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+.|.|+|...... ......+.+|.+|+|.+... .+...+......+... + ...+-+|.||.+..
T Consensus       127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~-~-~~~~gvVlN~~~~~  193 (204)
T TIGR01007       127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQT-G-SNFLGVVLNKVDIS  193 (204)
T ss_pred             cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC-C-CCEEEEEEeCcccc
Confidence            4678899998632211 12234567999999998853 2344444444444433 1 13456799999863

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=85.98  E-value=2.4  Score=34.38  Aligned_cols=63  Identities=22%  Similarity=0.063  Sum_probs=37.7

Q ss_pred             EEEEEEeCCChhhHhh-----hh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYRA-----IT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~-----~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      +.+.+.||+|....+.     +. -.-.-+.|=+++|+|+.-++...+...-|.+-....      =||+||.|-
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it------GvIlTKlDG  251 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT------GVILTKLDG  251 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc------eEEEEcccC
Confidence            5688999999754322     11 112346788999999987665555544444432221      245666664

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=85.91  E-value=8  Score=28.92  Aligned_cols=85  Identities=18%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeE-EEEeeCCCCcccccCCH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVI-MMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl~~~~~~~~   84 (163)
                      .+.+.|+||+|....... ...+..+|.+|++... +..++..+...+..+.... ..+.++ .+|.|+.+..       
T Consensus       115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-------  185 (268)
T TIGR01281       115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-------  185 (268)
T ss_pred             cCCEEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-------
Confidence            478899999875432222 1346779999998755 3334444444433333221 224543 5788998742       


Q ss_pred             HHHHHHHHHcCCcEEE
Q 031238           85 EDGHSLAEKEGLSFLE  100 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~  100 (163)
                      +....+.+..+.+++.
T Consensus       186 ~~~~~~~~~~~~~vl~  201 (268)
T TIGR01281       186 DLIERFNERVGMPVLG  201 (268)
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            2334444555655543

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=85.74  E-value=12  Score=29.12  Aligned_cols=96  Identities=9%  Similarity=0.074  Sum_probs=49.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhc--------CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRAITSAYYR--------GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ....++++.|.-.-..+...++.        .-+++|.|+|+.+......-...+......  .+   +||.||.|+...
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~--AD---~IvlnK~Dl~~~  165 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY--AD---RILLTKTDVAGE  165 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh--CC---EEEEeccccCCH
Confidence            45678888887654444433322        248899999997643221111111111112  12   678999998642


Q ss_pred             ccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHH
Q 031238           80 RAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAF  113 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~  113 (163)
                          .+......+..+  .+++.++ ........+|
T Consensus       166 ----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        166 ----AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             ----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence                134444444443  3555543 2223444444

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=85.26  E-value=4.8  Score=29.89  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH--HHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF--DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      .+.+.|.|+.|...  .+....+..+|.||+=.-.+..+..  .....|+..+.+....++|.-|+.|+..-.. .....
T Consensus        83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence            35789999988653  2345667789999888766643322  2334566666554455799999999986321 11111


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                      ..+.++..  +++++.+.-.......++|.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22233332  47777776666444444443

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=84.84  E-value=10  Score=30.77  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             EEEEEEeCCChhhHh----hhhhhhhc---CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYR----AITSAYYR---GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~----~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.+.|+||+|.....    .....++.   ...-+++|++++-. ..+.++   +..+...   + +-=+|.||.|-.. 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc-
Confidence            578999999974332    12222333   33467888888743 334333   3332211   1 1247899999521 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~  122 (163)
                         ..-.+..+....++++..++.  |+++ +++...=.+.+..
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~  410 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVR  410 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHH
Confidence               222455666677888777665  6664 5543333333433

>cd01900 YchF YchF subfamily

Probab=84.53  E-value=2.2  Score=32.51  Aligned_cols=34  Identities=15%  Similarity=0.059  Sum_probs=23.6

Q ss_pred             EEEEEeCCChhhH----hhhhh---hhhcCCcEEEEEEECC
Q 031238            9 KAQIWDTAGQERY----RAITS---AYYRGAVGALLVYDIT   42 (163)
Q Consensus         9 ~l~l~Dt~G~~~~----~~~~~---~~~~~~d~ii~v~d~~   42 (163)
                      .++++|+||...-    ..+..   ..++++|++++|+|+.
T Consensus        63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            5899999996431    12222   2367899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=84.12  E-value=7.7  Score=31.69  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=39.9

Q ss_pred             cEEEEEEECC--C--hhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEecc
Q 031238           33 VGALLVYDIT--K--RQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        33 d~ii~v~d~~--~--~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                      =|+++.-|-+  +  ++++.+. ..-+.+++..   ++|++++.|-.+--  .+-..+...++..+++.+++.+++
T Consensus       147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc  217 (492)
T PF09547_consen  147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNC  217 (492)
T ss_pred             eeEEEecCCCccCCChHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeeh
Confidence            3555555544  1  3455444 3455555544   68999999988642  222345566677777888777766

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=83.91  E-value=12  Score=27.85  Aligned_cols=66  Identities=11%  Similarity=0.035  Sum_probs=36.1

Q ss_pred             EEEEEEEeCCChhhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEE-EEeeC
Q 031238            7 TVKAQIWDTAGQERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIM-MAGNK   73 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pii-vv~nK   73 (163)
                      .+.+.|+|++|......+. ...+.-+|.+|+++..+ +.++..+..++..+..... .+.++. +|.|+
T Consensus       116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~  184 (270)
T cd02040         116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS  184 (270)
T ss_pred             CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence            4678999998764322221 11223599999998764 4455555444444433321 234554 44454

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.69  E-value=6.4  Score=31.27  Aligned_cols=97  Identities=11%  Similarity=0.158  Sum_probs=54.8

Q ss_pred             cCEEEEEEEEeCCChhh------------------H-------hhhhhhhhc--CCcEEEEEEECCCh-hHHHHHHHHHH
Q 031238            4 EGKTVKAQIWDTAGQER------------------Y-------RAITSAYYR--GAVGALLVYDITKR-QTFDNVLRWLR   55 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~------------------~-------~~~~~~~~~--~~d~ii~v~d~~~~-~s~~~~~~~~~   55 (163)
                      +|..+.|.+.||||.-+                  +       ..+.+..+.  ++|+++|.+..+.. -.--++ ..+.
T Consensus        75 ~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~Mk  153 (366)
T KOG2655|consen   75 NGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFMK  153 (366)
T ss_pred             CCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHHH
Confidence            56778899999999411                  1       011112233  68999999988742 111111 2222


Q ss_pred             HHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEeccCC
Q 031238           56 ELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALE  105 (163)
Q Consensus        56 ~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~  105 (163)
                      .+   .. .+.+|-|+-|.|.....+.  -...+.+.+...++++|......
T Consensus       154 ~l---~~-~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  154 KL---SK-KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HH---hc-cccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            22   22 4667778899997543322  23445556667777766555443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=83.65  E-value=4.3  Score=31.58  Aligned_cols=96  Identities=13%  Similarity=0.014  Sum_probs=54.0

Q ss_pred             eCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHH
Q 031238           14 DTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE   92 (163)
Q Consensus        14 Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~   92 (163)
                      +.+|+..- -...+..++..|.||=|=|+.-|-|-..  ..++.+.   + .+|=|+|.||+||.+..+ ....++.+..
T Consensus        28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~---~-~k~riiVlNK~DLad~~~-~k~~iq~~~~  100 (335)
T KOG2485|consen   28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL---P-PKPRIIVLNKMDLADPKE-QKKIIQYLEW  100 (335)
T ss_pred             cCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc---C-CCceEEEEecccccCchh-hhHHHHHHHh
Confidence            34555322 2234566888999999999987644221  1222222   2 577799999999976332 2445555554


Q ss_pred             HcCCcEEEeccCCCCC--HHHHHHHH
Q 031238           93 KEGLSFLETSALEATN--VEKAFQTI  116 (163)
Q Consensus        93 ~~~~~~~~~Sa~~~~~--i~~~~~~l  116 (163)
                      .....++..++....+  +..++..+
T Consensus       101 ~~~~~~~~~~c~~~~~~~v~~l~~il  126 (335)
T KOG2485|consen  101 QNLESYIKLDCNKDCNKQVSPLLKIL  126 (335)
T ss_pred             hcccchhhhhhhhhhhhccccHHHHH
Confidence            4333455555444333  44444433

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=83.62  E-value=18  Score=27.72  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=39.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCe-EEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIV-IMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p-iivv~nK~Dl   76 (163)
                      .+.+.++||+|......+. ..+..+|.+|++.+.+ ..++..+...+..+.... ..+.+ .-+|.|+.+.
T Consensus       115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~  184 (290)
T CHL00072        115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK  184 (290)
T ss_pred             cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence            4678999998763222221 2356799999988764 445555444433333221 12333 3478899873

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=83.54  E-value=4.7  Score=29.56  Aligned_cols=64  Identities=11%  Similarity=-0.008  Sum_probs=39.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl   76 (163)
                      .+.+.++|+++....  .....+..+|.+|++.+.+- .++.++........ ..  +.+ +.++.|+.+.
T Consensus       108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~~--~~~~~~vv~N~~~~  172 (251)
T TIGR01969       108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-KL--GTAILGVVLNRVTR  172 (251)
T ss_pred             hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-hc--CCceEEEEEECCCc
Confidence            467899999986543  23345667999999998753 34444433322222 21  234 5689999875

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=82.85  E-value=2.1  Score=30.15  Aligned_cols=81  Identities=21%  Similarity=0.139  Sum_probs=41.4

Q ss_pred             EEEEEEeCCChhhHhhh--hhh---hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            8 VKAQIWDTAGQERYRAI--TSA---YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~--~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      ....|.++.|...-..+  ...   ..-..+.+|.|+|+.+..........+........     ++++||.|+.... .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-h
Confidence            34566677774332222  011   12246899999999775434444444444443333     6889999986533 1


Q ss_pred             CHHHHHHHHHHc
Q 031238           83 TEEDGHSLAEKE   94 (163)
Q Consensus        83 ~~~~~~~~~~~~   94 (163)
                      ..+..++..+..
T Consensus       159 ~i~~~~~~ir~l  170 (178)
T PF02492_consen  159 KIERVREMIREL  170 (178)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            224444444443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=82.40  E-value=3.6  Score=28.76  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=13.7

Q ss_pred             HHHHcCCcEEEeccCCCCCHHHHHHHH
Q 031238           90 LAEKEGLSFLETSALEATNVEKAFQTI  116 (163)
Q Consensus        90 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l  116 (163)
                      ..+..|++++.+|+++++|++++.+.+
T Consensus         7 ~y~~~gy~v~~~S~~~~~g~~~l~~~l   33 (161)
T PF03193_consen    7 QYEKLGYPVFFISAKTGEGIEELKELL   33 (161)
T ss_dssp             HHHHTTSEEEE-BTTTTTTHHHHHHHH
T ss_pred             HHHHcCCcEEEEeCCCCcCHHHHHHHh
Confidence            334455555555555555555554433

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=81.52  E-value=23  Score=29.38  Aligned_cols=103  Identities=18%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             EEEEEEeCCChhhHhh---hhhhhhcC---CcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            8 VKAQIWDTAGQERYRA---ITSAYYRG---AVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~---~~~~~~~~---~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      ..+.++||+|......   .....+..   ..-.++|+|++. ...+.++...+..       ...--+|+||.|-..  
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-------~~~~g~IlTKlDet~--  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-------PGLAGCILTKLDEAA--  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-------CCCCEEEEeCCCCcc--
Confidence            3578999999432211   11112222   223688889874 3334333322221       123346789999421  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNV-EKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~~~l~~~~~~~  123 (163)
                        ..-.+..+....++++..++.  |++| +++-..-.+.+.+.
T Consensus       406 --~~G~~l~i~~~~~lPI~yvt~--GQ~VPeDL~~a~~~~lv~~  445 (484)
T PRK06995        406 --SLGGALDVVIRYKLPLHYVSN--GQRVPEDLHLANKKFLLHR  445 (484)
T ss_pred             --cchHHHHHHHHHCCCeEEEec--CCCChhhhccCCHHHHHHH
Confidence              223345566666777766654  7777 65543333344333

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=81.11  E-value=18  Score=29.09  Aligned_cols=95  Identities=12%  Similarity=-0.016  Sum_probs=51.2

Q ss_pred             EEEEEEEeCCChhhHhh----hhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            7 TVKAQIWDTAGQERYRA----ITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~----~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .+.+.|.||+|.-..+.    ....++..   ..-+++|+|++...  ..+...+..+...    -+-=+|+||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence            45789999999643221    11222332   22588999998652  2333334433221    12246889999421 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCH-HHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNV-EKAF  113 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~  113 (163)
                         ..=.+..++...++++..++.  |+++ +++.
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit~--Gq~vPeDl~  356 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVTD--GQIVPHNIS  356 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEeC--CCCChhhhh
Confidence               122334455566777666554  6666 5443

>PRK11670 antiporter inner membrane protein; Provisional

Probab=81.08  E-value=23  Score=28.21  Aligned_cols=66  Identities=12%  Similarity=0.032  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl   76 (163)
                      .+.+.++|+|..-.-..+....+-.+|++|+|.... ..++.+....+..+.+   .+.|+ -+|.|+.+.
T Consensus       215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~-~~s~~da~~~i~~~~~---~~~~ilGiV~Nm~~~  281 (369)
T PRK11670        215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQ-DIALIDAKKGIVMFEK---VEVPVLGIVENMSMH  281 (369)
T ss_pred             cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCc-hhHHHHHHHHHHHHhc---cCCCeEEEEEcCCcc
Confidence            467899999864321112222334589988888653 3344444444433322   24665 478898774

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=80.97  E-value=17  Score=27.87  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             EEEEEEEeCCChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHH---HHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            7 TVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .+.+.|+|++|...- .......+..+|.+|++.+.+ ..++..   +...+..+......-.++.+|.|+.+..     
T Consensus       122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~-----  195 (296)
T TIGR02016       122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS-----  195 (296)
T ss_pred             cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-----
Confidence            578899998764210 111112234688888887653 334433   3444444433321123466889998742     


Q ss_pred             CHHHHHHHHHHcCCcE
Q 031238           83 TEEDGHSLAEKEGLSF   98 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~   98 (163)
                        ...+++++..++++
T Consensus       196 --~~~~~~~~~~~i~v  209 (296)
T TIGR02016       196 --GEAQAFAREVGIPV  209 (296)
T ss_pred             --cHHHHHHHHcCCCe
Confidence              13355566666543

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=80.38  E-value=13  Score=28.22  Aligned_cols=85  Identities=11%  Similarity=0.049  Sum_probs=46.6

Q ss_pred             EEEEEEEeCCChhhH-----hhhhhhhh--cCCcEEEEEEECCC-hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERY-----RAITSAYY--RGAVGALLVYDITK-RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~-----~~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+.|+||+|....     ..+. .++  ...+-+++|+|++. +...   ..++..+...    .+-=+|+||.|-..
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~-~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~~----~~~~~I~TKlDet~  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMI-ETMGQVEPDYICLTLSASMKSKDM---IEIITNFKDI----HIDGIVFTKFDETA  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHH-HHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCCC----CCCEEEEEeecCCC
Confidence            467899999997532     1121 222  24567899999874 3333   3333333322    12246889999532


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEecc
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSA  103 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa  103 (163)
                      .    .=.+..++...+.++..++.
T Consensus       226 ~----~G~~l~~~~~~~~Pi~~it~  246 (270)
T PRK06731        226 S----SGELLKIPAVSSAPIVLMTD  246 (270)
T ss_pred             C----ccHHHHHHHHHCcCEEEEeC
Confidence            1    12334455566777666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-52
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-52
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-51
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-51
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-50
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-50
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		7e-50
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		8e-47
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-40
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-40
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-39
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		4e-36
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-36
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		8e-36
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-33
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-32
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-32
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-31
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		5e-31
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-30
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-30
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-30
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-30
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-30
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-30
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-30
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-30
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-30
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-30
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-30
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		7e-30
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-30
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-29
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-29
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-29
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-29
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-29
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-28
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-28
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-28
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-28
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-28
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-27
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-26
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-26
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-26
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		7e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		9e-26
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-26
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-25
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-25
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-25
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-25
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-25
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-25
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-25
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-25
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-25
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-25
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-25
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-25
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-25
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-25
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-24
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-24
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-23
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-23
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-23
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-23
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		6e-23
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-22
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-22
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-22
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-22
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-22
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-22
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		9e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-21
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-20
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-20
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-19
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-19
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-19
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		5e-19
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-18
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-18
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		9e-18
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-17
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		9e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-16
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-16
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-16
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		6e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		7e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-15
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		6e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-14
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-14
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-14
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-14
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-14
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-14
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		3e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-14
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-14
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-14
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		3e-14
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-14
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-14
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-14
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-14
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		7e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		9e-14
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-13
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-13
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-13
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-13
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-13
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-13
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-13
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-13
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-13
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		8e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-12
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-12
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-12
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-12
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-12
1byu_A	216	Canine Gdp-Ran Length = 216		3e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-12
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-12
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-12
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		6e-12
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		9e-12
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-10
1mh1_A	186	Small G-Protein Length = 186		3e-10
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-10
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-10
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		8e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-09
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-09
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-09
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-09
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-09
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-09
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-09
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-09
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-09
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-09
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-09
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-09
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-09
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-09
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-09
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-09
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-09
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-09
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		5e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		7e-09
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		9e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-08
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		5e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-08
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		6e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-07
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-07
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-07
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-06
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-06
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-06
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-06
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		4e-06
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		5e-06
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		8e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		8e-06
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		3e-05
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-05
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		3e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-05
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		7e-05
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		7e-05
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-05
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-05
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		7e-05
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-05
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-05
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-05
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-05
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		8e-05
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-05
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		8e-05
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-05
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		8e-05
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		8e-05
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-05
2kb0_A	178	Cdc42(T35a) Length = 178		8e-05
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		9e-05
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-04
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-04
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		5e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		5e-04
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		6e-04
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		6e-04

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  199 bits (506), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 106/119 (89%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 64  VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 123
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 124 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  199 bits (506), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 106/119 (89%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 73  VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  196 bits (498), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 105/119 (88%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 52  VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 112 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  196 bits (498), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 105/119 (88%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 73  VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 104/119 (87%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 49  VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVI + GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 109 SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  193 bits (490), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 104/119 (87%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 55  VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 114
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVI + GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 115 SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  192 bits (488), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 104/119 (87%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAGQERYR ITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 49  VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK  LSF+ETSAL++TNVE+AF+ ILTEIY
Sbjct: 109 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  182 bits (462), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 100/118 (84%)
Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN 64
            K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK+ +F+N+ +WL+ELRD+ADSN
Sbjct: 54  NKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSN 113
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           IVI++ GNKSDL HLR + + D    A+KE L+F+ETSALEATNVE AF  +L EIY+
Sbjct: 114 IVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 92/114 (80%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+  V RWL+EL DHA++ IV+
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           M+ GNKSDL+  R V  E+    AE  GL FLETSAL++TNVE AF+T+L EI+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 92/114 (80%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+  V RWL+EL DHA++ IV+
Sbjct: 59  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           M+ GNKSDL+  R V  E+    AE  GL FLETSAL++TNVE AF+T+L EI+
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/120 (60%), Positives = 93/120 (77%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +EGK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYDI+K  +++N   WL ELR++AD
Sbjct: 57  IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+ + + GNKSDL HLRAV  E+  + A++  L F ETSAL + NV+KAF+ ++  IY 
Sbjct: 117 DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 91/121 (75%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R TF+++  WL + R H
Sbjct: 52  ITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH 111
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           ++SN+VIM+ GNKSDL   R V +E+G + A + GL F+ETSA  A+NVE+AF     EI
Sbjct: 112 SNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
Query: 121 Y 121
           Y
Sbjct: 172 Y 172

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 90/120 (75%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VE K +KAQIWDTAG ERYRAITSAYYRGAVGAL+VYDI+K  +++N   WL ELR++AD
Sbjct: 54  VENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD 113
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+ + + GNKSDL HLRAV  ++  + A +  + F ETSAL + NV+KAF+ ++  I+ 
Sbjct: 114 DNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  145 bits (367), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 88/119 (73%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R H+ 
Sbjct: 65  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 124
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SN+VIM+ GNKSDL   R V  E+G + A + GL F+ETSA  A NVE+AF     EIY
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 86/118 (72%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +E KTVK QIWDTAGQER+R ITS+YYRGA G ++VYD+T R +FDNV +W++E+  +A 
Sbjct: 53  LENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM 112
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   R VT ++G  LA+  G+ F+ETSA  A NVE+AF T+  EI
Sbjct: 113 ENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA 
Sbjct: 50  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 109
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA    NVE AF T+  +I
Sbjct: 110 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 85/118 (72%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA 
Sbjct: 52  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA    NVE AF T+  +I
Sbjct: 112 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GKTVK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++++  WL + R  A 
Sbjct: 69  VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS 128
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF----QTILT 118
            NIV+++ GNK DL+  R VT  +    A++  L FLETSAL   NVE+AF    +TIL 
Sbjct: 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188
Query: 119 EI 120
           +I
Sbjct: 189 KI 190

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  129 bits (325), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 82/120 (68%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+ +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++  WL + R+  +
Sbjct: 59  VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 118
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N VI++ GNK+DL   R VT E+    AE+ GL FLE SA    NVE AF     +IY 
Sbjct: 119 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 60  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A 
Sbjct: 53  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNKSDL   + V        A+  G+ FLETSA  ATNVE+AF T+  EI
Sbjct: 113 ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK VK QIWDTAGQER+R IT +YYR A GA+L YDITKR +F +V  W+ ++R +A 
Sbjct: 73  IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 132
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
           SNIV ++ GNKSDL+ LR V+  +  SLAE  + L  +ETSA +++NVE+AF  + TE+
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A 
Sbjct: 53  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS 112
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNKSDL   + V        A+  G+ FLETSA  ATNVE+AF T+  EI
Sbjct: 113 ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 60  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 50  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 110 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 50  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 109
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 110 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 43  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 102
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 103 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 69  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 128
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 129 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 81/120 (67%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+ +K QIWDTAGQ R+RA+T +YYRGA GAL+VYDIT+R T++++  WL + R+  +
Sbjct: 74  VSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 133
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N VI++ GNK+DL   R VT E+    AE+ GL FLE SA    NVE AF     +IY 
Sbjct: 134 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 83/118 (70%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 77  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 136
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T   EI
Sbjct: 137 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  126 bits (317), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A 
Sbjct: 54  VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 113
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
            NIVI++ GNK DL+  R VT  +    A++  L FLETSAL   NVE+AF
Sbjct: 114 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +A 
Sbjct: 52  LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           S ++ ++ GNK DL   R V  +     A+   + FLETSAL++TNVE AF T+  +I
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  125 bits (315), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +A 
Sbjct: 52  LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           S ++ ++ GNK DL   R V  +     A+   + FLETSAL++TNVE AF T+  +I
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 84/118 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +A 
Sbjct: 65  LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 124
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           S ++ ++ GNK DL   R V  +     A+   + FLETSAL++TNVE AF T+  +I
Sbjct: 125 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 79/111 (71%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A 
Sbjct: 55  VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 114
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
            NIVI++ GNK DL+  R VT  +    A++  L FLETSAL   +VE+AF
Sbjct: 115 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 80/118 (67%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  VK Q+WDTAGQER+R++T AYYR A   LL+YD+T + +FDN+  WL E+ ++A 
Sbjct: 55  VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            ++ +M+ GNK D  H R V  EDG  LA++ GL F+ETSA    NV+ AF  I  E+
Sbjct: 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 83/118 (70%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 52  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            N+  ++ G K DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI
Sbjct: 112 ENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  +TF N+ +W + + +HA+
Sbjct: 47  INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 106
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+
Sbjct: 107 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 78/111 (70%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GK VK QIWDTAG ER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A 
Sbjct: 52  VGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 111
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
            NIVI++ GNK DL+  R VT  +    A++  L FLETSAL   +VE+AF
Sbjct: 112 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T  +TF N+ +W + + +HA+
Sbjct: 64  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 123
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+
Sbjct: 124 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T  +TF N+ +W + + +HA+
Sbjct: 51  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 110
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+
Sbjct: 111 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 80/116 (68%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V   TVK +IWDTAGQERY ++   YYRGA  A++V+D+T + +F+   +W++EL+  
Sbjct: 54  LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            + N+V+ +AGNKSDL   R VT ED  + A++ GL F+ETSA  ATNV++ F  I
Sbjct: 114 GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK QIWDTAGQER+R IT+AYYRGA G +LVYDIT  +TF N+ +W + + +HA+
Sbjct: 47  INGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN 106
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               +++ GNKSD    R VT + G +LA++ G+ F+E+SA    NV + F T+
Sbjct: 107 DEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK Q+WDTAGQER+R IT+AYYRGA G +LVYD+T  +TF N+ +W + + +HA+
Sbjct: 47  INGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN 106
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               +++ GNKSD    R VT + G +LA++ G+ F+E+SA    NV + F T+
Sbjct: 107 DEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 76/115 (66%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
           K VK QIWDTAGQERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ ++  N 
Sbjct: 70  KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 66  VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +++ GNK D+   R V  E G  LAE+ G  F E SA E  +V +AF+ ++  I
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 75/115 (65%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
           K +K QIWDTAGQERYR IT+AYYRGA+G LL+YDI  +++F  V  W  +++ ++  N 
Sbjct: 69  KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 66  VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +++ GNK DL   R V  EDG  LA+  G  F E SA E  NV++ F+ ++  I
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 9   KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
           K  IWDTAGQER+ ++   YYRG+  A++VYDITK+ +F  + +W++EL++H   NIV+ 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           +AGNK DL+ +R V  +D    AE  G   +ETSA  A N+E+ FQ I  +I
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 5   GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS- 63
           G+ +  Q+WDTAG ER+R++T+A++R A+G LL++D+T  Q+F NV  W+ +L+ HA S 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 64  NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           N  I++ GNKSDL   RAV EE+   LAEK G+ + ETSA   TN+  A + +L  I
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 69/108 (63%)
Query: 9   KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
           K  IWDTAGQER+RA+   YYRG+  A++VYDITK +TF  +  W+RELR H   +IV+ 
Sbjct: 55  KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           +AGNK DL  +R V E D    A+     F+ETSA  A N+ + F  I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 71/110 (64%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT   TF     W++EL+  A  NIV
Sbjct: 53  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 112
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I +AGNK+DL   RAV  ++  + A+   L F+ETSA  A NV + F  I
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 71/110 (64%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT   TF     W++EL+  A  NIV
Sbjct: 51  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 110
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I +AGNK+DL   RAV  ++  + A+   L F+ETSA  A NV + F  I
Sbjct: 111 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 55  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 114
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/110 (48%), Positives = 73/110 (66%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 76/115 (66%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
           K +K QIWDTAGQERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ ++  N 
Sbjct: 52  KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 111
Query: 66  VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +++ GNK D+   R V+ E G  LA+  G  F E SA +  NV++ F+ ++  I
Sbjct: 112 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 75/114 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 54  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 113
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 114 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 74/111 (66%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + G+ VK QIWDTAGQER+R+IT +YYR A   +L YDIT  ++F  +  WLRE+  +A 
Sbjct: 70  INGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 129
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           + ++ ++ GNK DL   R V+++     +E + + +LETSA E+ NVEK F
Sbjct: 130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK ++ QIWDTAGQER+ +ITSAYYR A G +LVYDITK++TFD++ +W++ +  +A 
Sbjct: 70  LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 129
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
            +  +++ GNK D    R +T + G   A++  G+ F E SA +  NV++ F  ++ +I
Sbjct: 130 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + G+ VK QIWDTAGQER+R ITS YYRG  G ++VYD+T  ++F NV RWL E+  + D
Sbjct: 53  INGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD 112
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            ++  ++ GNK+D    + V  ED +  A + G+   ETSA E  NVE+ F  I
Sbjct: 113 -DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 74/114 (64%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT ++TF     W++EL+  A  +IV
Sbjct: 56  TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIV 115
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I +AGNK+DL + R V  E+  + A+   L F+ETSA  A NV   F  I  ++
Sbjct: 116 IALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 74/114 (64%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 55  TVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 114
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           I ++GNK+DL + RAV  ++  S A+   L F ETSA  + NV + F  I  ++
Sbjct: 115 IALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 70/110 (63%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAG ERY ++   YYRGA  A++VYDIT   TF     W++EL+  A  NIV
Sbjct: 53  TVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIV 112
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I +AGNK+DL   RAV  ++  + A+   L F+ETSA  A NV + F  I
Sbjct: 113 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 9   KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM 68
           K  IWDTAG ER+RA+   YYRG+  A++VYDITK +TF  +  W+RELR H   +IV+ 
Sbjct: 56  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           +AGNK DL  +R V E D    A+     F+ETSA  A N+ + F  I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAG ERY ++   YYRGA  A++VYDIT  ++F     W++EL+  A  NIV
Sbjct: 53  TVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV 112
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I
Sbjct: 113 IALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 5   GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           GK  K   Q+WDTAGQER+R++T+A++R A+G LL++D+T +Q+F NV  W+ +L+ +A 
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             N  I++ GNK+DL   R V E     LA+K G+ + ETSA    NVEKA +T+L  I
Sbjct: 139 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI 65
           K +K QIWDTAG ERYR IT+AYYRGA G +L YDIT  ++F+ V  W  +++ ++  N 
Sbjct: 55  KRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNA 114
Query: 66  VIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +++ GNK D    R V+ E G  LA+  G  F E SA +  NV++ F+ ++  I
Sbjct: 115 QVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Query: 5   GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           GK  K   Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV  W+ +L+ +A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             N  I++ GNK+DL   R V E     LAEK G+ + ETSA    NVEK+ +T+L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
Query: 5   GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           GK  K   Q+WDTAG ER+R++T+A++R A+G LL++D+T +Q+F NV  W+ +L+ +A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 124
Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             N  I++ GNK+DL   R V E     LAEK G+ + ETSA    NVEK+ +T+L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
           TVK +IWDTAGQER+ ++   YYR A  AL+VYD+TK Q+F     W++EL + A  +I+
Sbjct: 51  TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII 110
Query: 67  IMMAGNKSDL---NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           I + GNK D       R V  E+G  LAE++GL F ETSA    NV   F  I
Sbjct: 111 IALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 56  MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE 115
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL+  R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 116 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 77/116 (66%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 44  MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE 103
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R +T E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 104 RGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 77/116 (66%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +T++ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 48  MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 107
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 108 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 77/116 (66%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 43  MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 102
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 103 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 5   GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           GK  K   Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV  W  +L+ +A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             N  I++ GNK+DL   R V E     LAEK G+ + ETSA    NVEK+ +T+L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 5   GKTVKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           GK  K   Q+WDTAG ER+R++T+A++R A G LL +D+T +Q+F NV  W  +L+ +A 
Sbjct: 65  GKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAY 124
Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             N  I++ GNK+DL   R V E     LAEK G+ + ETSA    NVEK+ +T+L  I
Sbjct: 125 CENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 72/107 (67%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           V+ Q+WDTAGQER+R++  +Y R +  A++VYDIT RQ+F+N  +W++++ +    +++I
Sbjct: 50  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
            + GNK+DL  LR VT E+G   A++    F ETSA    N++  F+
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 76/116 (65%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +T++ Q+WDTAG ER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 55  MYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 114
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 115 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 76/116 (65%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAG ER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 58  MYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 117
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 118 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 76/116 (65%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAG ER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 48  MYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 107
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +
Sbjct: 108 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 60/74 (81%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 42  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 101
Query: 63  SNIVIMMAGNKSDL 76
            N+  ++ GNK DL
Sbjct: 102 ENVNKLLVGNKCDL 115

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G   K  IWDTAGQER+R +T +YYRGA G +LVYD+T+R TF  +  WL EL  +  
Sbjct: 59  VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 118
Query: 63  SN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
            N IV  + GNK D  + R V   +G   A K    F+E SA     V+ AF+ ++ +I 
Sbjct: 119 RNDIVNXLVGNKIDKEN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKII 177
Query: 122 H 122
Sbjct: 178 Q 178

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK V   IWDTAGQER+ A+   YYR + GA+LVYDIT   +F  V  W++ELR    
Sbjct: 64  IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 123
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           + I + + GNK DL   R V+ ++  S AE  G     TSA +   +E+ F
Sbjct: 124 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK V   IWDTAGQER+ A+   YYR + GA+LVYDIT   +F  V  W++ELR    
Sbjct: 50  IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           + I + + GNK DL   R V+ ++  S AE  G     TSA +   +E+ F
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 64/111 (57%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK V   IWDTAGQER+ A+   YYR + GA+LVYDIT   +F  V  W++ELR    
Sbjct: 50  IGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           + I + + GNK DL   R V+ ++  S AE  G     TSA +   +E+ F
Sbjct: 110 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +IV+G+    Q+WDTAGQER+R+I  +Y+R A G LL+YD+T  ++F N+  W+  + D 
Sbjct: 70  LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129
Query: 61  ADSNIVIMMAGNKSDLNHL------RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
           A   + IM+ GNK+D+         + V    G  LA   G  F ETSA + +N+ +A  
Sbjct: 130 AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189
Query: 115 TILTEI 120
            +  E+
Sbjct: 190 HLAREV 195

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAGQER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK DL + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAGQER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK DL + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAGQER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK D  + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAG ER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 50  VMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109
Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK DL + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           +K  IWDTAGQERY +I   YYRGA  A++V+DI+   T D    W+ +L+    SN +I
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           ++  NK D N  + V   +    A+   L F++TSA   TN++  F  +  EIY
Sbjct: 151 ILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G+ V  QIWDTAGQER++++ + +YRGA   LL + +  RQ+F+N+  W +E   +AD
Sbjct: 51  VDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110
Query: 63  ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                +   ++ GNK D    +  TEE      E     +LETSA + TNV  AF+  + 
Sbjct: 111 VKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVR 170
Query: 119 EI 120
           ++
Sbjct: 171 QV 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +AD
Sbjct: 55  VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 114
Query: 63  ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                +   ++ GNK+D+   +  TEE      +     + ETSA ++TNV  AF+  + 
Sbjct: 115 VKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVR 174
Query: 119 EI 120
            I
Sbjct: 175 RI 176

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +AD
Sbjct: 53  VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112
Query: 63  ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
                +   ++ GNK D++  +  TEE      +     + ETSA +ATNV  AF+
Sbjct: 113 VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +AD
Sbjct: 51  VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110
Query: 63  ----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
                +   ++ GNK D++  +  TEE      +     + ETSA +ATNV  AF+
Sbjct: 111 VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 2   IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDH 60
           +++ +  +  I DTAGQE + A+   Y R   G LLV+ +T R +F+ + ++ R+ LR  
Sbjct: 47  VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
                 +++ GNK+DL+H R VT+E+G  LA +  ++++E SA    NV++AF  ++  I
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114
Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174
Query: 120 I 120
           I
Sbjct: 175 I 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 59  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118
Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178
Query: 120 I 120
           I
Sbjct: 179 I 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 47  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 120 I 120
           I
Sbjct: 167 I 167

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 45  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104
Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + A++  ++++ETSA    NV+K F  ++ E
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164
Query: 120 I 120
           I
Sbjct: 165 I 165

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN- 64
           K    Q+WDTAGQER++++  A+YRGA   +LVYD+T   +F+N+  W  E   HA+ N 
Sbjct: 56  KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 65  ---IVIMMAGNKSDLNHLRA-VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTI 116
                 ++ GNK D    +  V+E+    LA+  G +    TSA  A NV+ AF+ I
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAG E Y AI   Y+R   G LLV+ IT+ ++F     +  + LR 
Sbjct: 48  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 107
Query: 60  HADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
            A+ + I +++ GNKSDL   R V  E+  S AE+ G+ ++ETSA    NV+K F  ++ 
Sbjct: 108 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 167
Query: 119 EI 120
           EI
Sbjct: 168 EI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAG E Y AI   Y+R   G LLV+ IT+ ++F     +  + LR 
Sbjct: 44  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRV 103
Query: 60  HADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
            A+ + I +++ GNKSDL   R V  E+  S AE+ G+ ++ETSA    NV+K F  ++ 
Sbjct: 104 KAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMR 163
Query: 119 EI 120
           EI
Sbjct: 164 EI 165

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAG E Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 47  VVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 106
Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 107 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 166
Query: 120 I 120
           I
Sbjct: 167 I 167

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++  
Sbjct: 62  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV 121
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ E
Sbjct: 122 KDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180
Query: 120 I 120
           I
Sbjct: 181 I 181

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNKSDL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 3   VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
           ++G+ +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W+ E + H 
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123
Query: 62  DSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATN---VEKAFQTI 116
            +N I  ++ GNK DL     V  +     A+   +   ETSA    +   VE  F T+
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNKSDL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
           I
Sbjct: 164 I 164

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNKSDL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
           I
Sbjct: 164 I 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNKSDL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
           I
Sbjct: 164 I 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104
Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
Query: 120 I 120
           I
Sbjct: 164 I 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 50  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 109
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 110 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 168
Query: 120 I 120
           I
Sbjct: 169 I 169

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 51  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 110
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 111 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 169
Query: 120 I 120
           I
Sbjct: 170 I 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
           I
Sbjct: 168 I 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 49  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
           I
Sbjct: 168 I 168

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLAG-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V  + V+  +WDTAGQE + AIT AYYRGA   +LV+  T R++F+ +  W RE      
Sbjct: 49  VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEV 107
Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            +I   +  NK DL     +  E+   LA++  L F  TS  E  NV + F+ +
Sbjct: 108 GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 3   VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
           ++G+ +K Q+WDTAGQER+R ++   YYR     + VYD T   +F ++  W+ E + H 
Sbjct: 73  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL 132
Query: 62  DSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATN---VEKAFQTI 116
            +N I  ++ GNK DL     V  +     A+       ETSA    +   VE  F T+
Sbjct: 133 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GN+ DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DT GQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V   IWDTAGQ+ Y  +   +Y  A   LL +D+T   +FDN+  RW  E+ +H 
Sbjct: 77  VKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHF 135
Query: 62  DSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
              + I++ G K+DL            N L  VT   G  +A   G +++LE SA    N
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
Query: 109 VEKAFQ 114
           V   FQ
Sbjct: 196 VHAVFQ 201

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
Sbjct: 163 F 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG+E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DT GQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%)
Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS 63
           +G  +K  +WDTAGQE+   +   YY GA GA+L +D+T R T  N+ RW++E +    +
Sbjct: 57  QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN 116
Query: 64  NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
              I++  NK D+ + + ++++    + + +   + E SA  A N    F
Sbjct: 117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSN 64
           V  QIWD  GQ     +   Y  GA G LLVYDIT  Q+F+N+  W   ++++ + +++ 
Sbjct: 56  VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            ++ + GNK DL H+R +  E      ++ G S    SA    +V   FQ +  EI
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
           + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++ 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
            NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+     I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
           + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++ 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
            NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
           + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++ 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
            NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMA 70
           + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++ 
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
            NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 62  VVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 121
Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 122 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 180
Query: 120 I 120
           I
Sbjct: 181 I 181

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTA QE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTA QE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 49  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 108
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 109 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 167
Query: 120 I 120
           I
Sbjct: 168 I 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAG E Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE   A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103
Query: 61  ADSNIVIM-MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS+ V M + GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162
Query: 120 I 120
           I
Sbjct: 163 I 163

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+G+ V   +WDTAGQE Y  +    YRGA   +L + +  + +++NVL +W+ ELR  A
Sbjct: 52  VDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA 111
Query: 62  DSNIVIMMAGNKSDL--------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKA 112
             N+ I++ G K DL        +H   +T   G  L ++ G  +++E S+    NV+  
Sbjct: 112 -PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170
Query: 113 FQTIL 117
           F T +
Sbjct: 171 FDTAI 175

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE+Y  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT + TF N L+ LRE  LR  
Sbjct: 48  VDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 106
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
              ++ +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
Query: 120 I 120
           I
Sbjct: 167 I 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT + TF N L+ LRE  LR  
Sbjct: 46  VDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
              ++ +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
           I
Sbjct: 165 I 165

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V+G   +  I DTAGQE + A+   Y R   G LLV+ I  RQ+F+ V +   + LR   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             +  +++ GNK+DL   R V   +  +      +++ E SA    NV++AF+ ++  +
Sbjct: 112 RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 51  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 109
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 110 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 154

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 59  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPI 117
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 118 VLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 121
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 122 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 121
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 122 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 166

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT + TF N L+ LRE  LR  
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
              ++ +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
           I
Sbjct: 165 I 165

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDH 60
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT + TF N L+ LRE  LR  
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVK 104
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTE 119
              ++ +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
Query: 120 I 120
           I
Sbjct: 165 I 165

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAGQE++  +   YY  A  A++ +D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     +L D   
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
              I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     +L D   
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
              I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     +L D   
Sbjct: 44  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
              I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     +L D   
Sbjct: 47  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
              I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 14  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD-HADSNIVIMMAGN 72
           DTAGQ+ Y  +  ++  G  G +LVY +T   +F  +    ++L + H  + + +++ GN
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 73  KSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           K+DL+  R V   +G  LAE  G +F+E+SA E    +  F  ++ EI
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 53  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 111
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+   +   +    +   K+ L + + SA    N EK F
Sbjct: 112 VLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPF 155

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 54  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 112
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+   +   +    +   K+ L + + SA    N EK F
Sbjct: 113 VLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPF 156

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 67
           +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI I
Sbjct: 61  IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPI 119
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           ++ GNK D+   +   +    +   K+ L + + SA    N EK F
Sbjct: 120 VLCGNKVDVKERK--VKAKTITFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 54  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 112
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 113 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 157

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 60  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIP 118
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 119 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 163

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-- 60
           ++ + V  +I DTAGQE        + R   G +LVYDIT R +F+ VL  L+ + D   
Sbjct: 71  IDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIK 128
Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTE 119
              N+ +++ GNK+DL+H R V+ E+G  LA +   +F E SA     N+ + F  +  E
Sbjct: 129 KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE 188
Query: 120 I 120
           +
Sbjct: 189 V 189

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+G TV   +WDTAGQE Y  +    YRGA   LL + +  + +++N+  +WL EL+ 
Sbjct: 47  VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKH 106
Query: 60  HADSNIVIMMAGNKSDL--------NHLRA--VTEEDGHSLAEKEG-LSFLETSALEATN 108
           +A   I I++ G K DL        +H  A  +T   G  L +  G + +LE S+    N
Sbjct: 107 YA-PGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 109 VEKAFQTIL 117
           V+  F T +
Sbjct: 166 VKAVFDTAI 174

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV 66
            +K  +WDTAG E++  +   YY  A  A++++D+T R T+ NV  W R+L      NI 
Sbjct: 58  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIP 116
Query: 67  IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 113
           I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V+G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV  +W+ ELR 
Sbjct: 47  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRH 106
Query: 60  HADSNIVIMMAGNKSDL--------NHLRAV--TEEDGHSLAEKEGLS-FLETSALEATN 108
           +A   + I++ G K DL        +H  AV  T   G  L +  G   ++E S+    N
Sbjct: 107 YA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 109 VEKAF 113
           V+  F
Sbjct: 166 VKAVF 170

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIM 68
           +I DTAG E++ ++   Y +   G +LVY +  +Q+F ++ + +R+  +R      + ++
Sbjct: 54  EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVI 112
Query: 69  MAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           + GNK DL   R V+  +G +LAE+ G  F+ETSA   T V++ F  I+ ++
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV  +W  E+R 
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 165 RGLKTVF 171

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV  +W  E+R 
Sbjct: 48  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 166
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 167 RGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV  +W+ EL+ 
Sbjct: 49  VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108
Query: 60  HADSNIVIMMAGNKSDL--------NHLRAV--TEEDGHSLAEKEGL-SFLETSALEATN 108
           +A   + I++ G K DL        +H  AV  T   G  L +  G  +++E S+    N
Sbjct: 109 YA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Query: 109 VEKAF 113
           V+  F
Sbjct: 168 VKGVF 172

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+G+ V+ Q+ DTAGQ+ +  +    Y      LL + +    +F NV  +W+ E+R H 
Sbjct: 63  VDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC 122
Query: 62  DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEK-EGLSFLETSALEATN 108
               +I++ G +SDL               + V EE    LAE+ +  S++E SAL   N
Sbjct: 123 PKAPIILV-GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
Query: 109 VEKAF 113
           +++ F
Sbjct: 182 LKEVF 186

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 51  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 169
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 170 RGLKTVF 176

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 46  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 104
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 165 VREVFE 170

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 52  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 110
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 111 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 170
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 171 VREVFE 176

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 46  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 104
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 165 VREVFE 170

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 63  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 181
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 182 RGLKTVF 188

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 49  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 107
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 168 VREVFE 173

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 50  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 169 VREVFE 174

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 49  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 107
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 168 VREVFE 173

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 50  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 169 VREVFE 174

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 54  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 172
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 173 RGLKTVF 179

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 51  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 109
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 170 VREVFE 175

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + +    + +N+  +W+ E++ H 
Sbjct: 68  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HF 126
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
             N+ I++  NK DL    H+R          V  +DG ++A + +   +LE SA     
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 109 VEKAFQT 115
           V + F+T
Sbjct: 187 VREVFET 193

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 50  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 108
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 169 VREVFE 174

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 68  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 126
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A +     +LE SA     
Sbjct: 127 XPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 187 VREVFE 192

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDLN---HLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A +     +LE SA     
Sbjct: 107 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 68  VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 126
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEK-EGLSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A +     +LE SA     
Sbjct: 127 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 187 VREVFE 192

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+ K V   +WDTAGQE Y  +    Y      L+ + +    +++NV  +W  E+R 
Sbjct: 44  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H  S  +I++ G K DL              L  +T   G +LA E + + +LE SAL  
Sbjct: 104 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   +  I++ G K DL              L  +T   G ++A + G + +LE SAL  
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+ K V   +WDTAGQE Y  +    Y      L+ + +    +++NV  +W  E+R 
Sbjct: 50  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H  S  +I++ G K DL              L  +T   G +LA E + + +LE SAL  
Sbjct: 110 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 168
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 169 RGLKTVF 175

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   +  I++ G K DL              L  +T   G ++A + G + +LE SAL  
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 164 RGLKTVF 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   +  I++ G K DL              L  +T   G ++A + G + +LE SAL  
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 164 RGLKTVF 170

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+ K V   +WDTAGQE Y  +    Y      L+ + +    +++NV  +W  E+R 
Sbjct: 51  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H  S  +I++ G K DL              L  +T   G +LA E + + +LE SAL  
Sbjct: 111 HCPSTPIILV-GTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 169
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 170 RGLKTVF 176

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 47  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 165
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 166 RGLKTVF 172

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAG E Y  +    Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 51  VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 109
Query: 62  DSNIVIMMAGNKSDL---NHLR---------AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL    H R          V  E+G  +A + G   ++E SA     
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 170 VREVFE 175

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 71  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 34/146 (23%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---------------- 44
           ++V+GK V   +WDTAGQE Y  +    Y   VG     DIT R                
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 45  ---QTFDNV-LRWLRELRDHADSNIVIMMAGNKSDL------------NHLRAVTEEDGH 88
               +F+NV  +W  E+R H   N  I++ G K DL              L  +T   G 
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 89  SLAEKEG-LSFLETSALEATNVEKAF 113
           ++A++ G + +LE SAL    ++  F
Sbjct: 165 AMAKEIGAVKYLECSALTQRGLKTVF 190

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVI 67
           QI DT G  ++ A+           +LVY IT RQ+ +    +   + E++   +S I I
Sbjct: 54  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES-IPI 112
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           M+ GNK D +  R V   +  +LA     +F+ETSA    NV++ FQ +L
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E+++  
Sbjct: 71  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 62  DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N  +++ G KSDL           NH +  V+ + G ++A++ G  +++E SAL++ N
Sbjct: 131 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMM 69
            +WDTAGQE Y  +    Y  +   LL + +  R +FDN+  +W  E++ + D+   +++
Sbjct: 74  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133
Query: 70  AGNKSDLNHLRA--VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121
            G K DL    +  VT+++G  L +K G ++++E S++    + + F+  +  I+
Sbjct: 134 -GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E+++  
Sbjct: 66  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 62  DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N  +++ G KSDL           NH +  V+ + G ++A++ G  +++E SAL++ N
Sbjct: 126 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 15/120 (12%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E+++  
Sbjct: 50  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 62  DSNIVIMMAGNKSDL-----------NHLR-AVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N  +++ G KSDL           NH +  V+ + G ++A++ G  +++E SAL++ N
Sbjct: 110 -PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+GK V+  +WDTAGQE Y       Y      L+ + I    + +N+  +W  E++ H 
Sbjct: 48  VDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HF 106
Query: 62  DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+ I++ GNK DL +               V   +G  +A + G   ++E SA     
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDG 166
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 167 VREVFE 172

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMM 69
            +WDTAGQE Y  +    Y  +   LL + +  R +FDN+  +W  E++ + D+   +++
Sbjct: 73  HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 132
Query: 70  AGNKSDLNHLRA--VTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121
            G K DL    +  VT+++G  L +K G ++++E S++    + + F+  +  I+
Sbjct: 133 -GLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 186

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
           E + V+  +WDT+G   Y  +    Y  +   LL +DI++ +T D+ L +W  E+ D+  
Sbjct: 54  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 113
Query: 63  SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
           S  V+++ G K+D          L+H +   ++ E G ++A++ G   +LE SA  +   
Sbjct: 114 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 169
Query: 110 EKAFQTIL 117
           EK+  +I 
Sbjct: 170 EKSIHSIF 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
           E + V+  +WDT+G   Y  +    Y  +   LL +DI++ +T D+ L +W  E+ D+  
Sbjct: 55  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 114
Query: 63  SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
           S  V+++ G K+D          L+H +   ++ E G ++A++ G   +LE SA  +   
Sbjct: 115 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 170
Query: 110 EKAFQTIL 117
           EK+  +I 
Sbjct: 171 EKSIHSIF 178

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V+G+ V+  +WDTAGQE Y  +    Y  +   L+ + I    + +NV  +W+ E+  H 
Sbjct: 53  VDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HF 111
Query: 62  DSNIVIMMAGNKSDL-------NHLR-----AVTEEDGHSLAEKEGLS-FLETSALEATN 108
              + I++ G K DL         LR      VT ++G S+A++ G + + E SA     
Sbjct: 112 CQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYG 171
Query: 109 VEKAFQ 114
           V + F+
Sbjct: 172 VREVFE 177

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 18/128 (14%)
Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHAD 62
           E + V+  +WDT+G   Y  +    Y  +   LL +DI++ +T D+ L +W  E+ D+  
Sbjct: 71  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 130
Query: 63  SNIVIMMAGNKSD----------LNHLR--AVTEEDGHSLAEKEGLS-FLETSALEATNV 109
           S  V+++ G K+D          L+H +   ++ E G ++A++ G   +LE SA  +   
Sbjct: 131 STRVLLI-GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS--- 186
Query: 110 EKAFQTIL 117
           EK+  +I 
Sbjct: 187 EKSIHSIF 194

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN---VLRWLRELRDHADSNIVI 67
           QI DT G  ++ A+           +LV+ +T +Q+ +    + + + +++   + +I +
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPV 117
Query: 68  MMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
           M+ GNK D    R V   +  ++A++   +F+ETSA    NV++ FQ +LT
Sbjct: 118 MLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 36  LLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE 94
           L+VY IT R +F+       +LR    + +I I++ GNKSDL   R V+  +G + A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 95  GLSFLETSALEATNVEKAFQTILTEI 120
              F+ETSA    NV++ F+ I+ ++
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+VY IT R +F+    LR  LR  R   D  I I++ GNKSDL   R V+  +G + A 
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRCREVSVSEGRACAV 173
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                F+ETSA    NV++ F+ I+ ++
Sbjct: 174 VFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 7   TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADS 63
           +V+  + DTAG + Y+   S Y+ G   A+LV+D++  ++F++   W   L+  R   + 
Sbjct: 72  SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131
Query: 64  NIVIMMAGNKSDLNHLRAVTEED-GHSLAEKEGLSFLETSA-LEATNVEKAFQTILTEIY 121
            +  ++  NK+DL   R     D     A    L F + SA     + +  F +I T  Y
Sbjct: 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191
Query: 122 H 122
Sbjct: 192 R 192

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AXKPHEIQEKLGLT 129

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 424 AIILIFANKQDLPDAMKP-----HEIQEKLGLT 451

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+G+     ++D   Q+  R +           ++VY +T + +F+       +LR  
Sbjct: 47  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 61  ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             ++ + I++ GNKSDL   R V+ ++G + A      F+ETSA    NV+  F+ ++ +
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 120 I 120
           I
Sbjct: 167 I 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+G+     ++D   Q+  R +           ++VY +T + +F+       +LR  
Sbjct: 42  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101
Query: 61  ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             ++ + I++ GNKSDL   R V+ ++G + A      F+ETSA    NV+  F+ ++ +
Sbjct: 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
Query: 120 I 120
           I
Sbjct: 162 I 162

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+VY IT R +F+    LR  LR  R   D  I I++ GNKSDL   R V+  +G + A 
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                F+ETSA    NV++ F+ I+ ++
Sbjct: 143 VFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV--LR-WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+VY IT R +F+    LR  LR  R   D  I I++ GNKSDL   R V+  +G + A 
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRXREVSVSEGRAXAV 142
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                F+ETSA    NV++ F+ I+ ++
Sbjct: 143 VFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+G+     ++D   Q+  R +           ++VY +T + +F+       +LR  
Sbjct: 47  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 61  ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             ++ + I++ GNKSDL   R V+ ++G + A      F+ETSA    NV+  F+ ++ +
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
Query: 120 I 120
           I
Sbjct: 167 I 167

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 114 AIILIFANKQDLPDAMK-----PHEIQEKLGLT 141

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 55  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 115 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 142

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHA 61
           V GK     ++DTAGQE Y  +    Y      L+ + +    +F NV   W+ EL+++A
Sbjct: 61  VGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 120
Query: 62  DSNIVIMMAGNKSD----------LNHL--RAVTEEDGHSLAEKEG-LSFLETSALEATN 108
             N+  ++ G + D          LN +  + +  E G  LA++ G   ++E SAL    
Sbjct: 121 -PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179
Query: 109 VEKAFQTILTEI 120
           ++  F   +  I
Sbjct: 180 LKTVFDEAIIAI 191

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 129

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 102 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 129

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+V+ +T R++F  V   L  LR  R H D  + +++ GNKSDL   R V+ E+G  LA 
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 158
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                 +ETSA    N  + F+  + +I
Sbjct: 159 TLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 30  RGAVGALLVYDITKRQTFDNVLRWLRELR-DHADSNIVIMMAGNKSDLNHLRAVTEEDGH 88
           +G    ++VY I  R +F++      +LR  H   ++ I++ GNK+DL   R V+ E+G 
Sbjct: 76  QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135
Query: 89  SLAEKEGLSFLETSALEATNVEKAFQ 114
           + A      F+ETSA    NV + F+
Sbjct: 136 ACAVVFDCKFIETSATLQHNVAELFE 161

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+V+ +T R++F  V   L  LR  R H D  + +++ GNKSDL   R V+ E+G  LA 
Sbjct: 80  LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 137
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                 +ETSA    N  + F+  + +I
Sbjct: 138 TLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 36  LLVYDITKRQTFDNV---LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAE 92
           L+V+ +T R++F  V   L  LR  R H D  + +++ GNKSDL   R V+ E+G  LA 
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAG 147
Query: 93  KEGLSFLETSALEATNVEKAFQTILTEI 120
                 +ETSA    N  + F+  + +I
Sbjct: 148 TLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  G ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 55  KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 115 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 142

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  G ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 44  KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 103
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 104 AIILIFANKQDLPDAMK-----PHEIQEKLGLT 131

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSN 64
           K VK  +WD  G ++ R +   YY G  G + V D   R   D   + L R + D    +
Sbjct: 45  KNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 104
Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
            +I++  NK DL           H + EK GL+
Sbjct: 105 AIILIFANKQDLPD-----AMKPHEIQEKLGLT 132

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV------LRWLRE 56
           VE K +   +WD  GQ+R R +   Y++   G + V D   R+    V      +  + E
Sbjct: 56  VEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE 115
Query: 57  LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL 99
           LRD      V+++  NK DL +  A++E     + +K GL  L
Sbjct: 116 LRDA-----VLLLFANKQDLPNAMAISE-----MTDKLGLQSL 148

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 46  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 165 KGLKNVF 171

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 45  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 104
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 105 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 163
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 164 KGLKNVF 170

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 47  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 166 KGLKNVF 172

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 54  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 113
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 114 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 172
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 173 KGLKNVF 179

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 48  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 108 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 167 KGLKNVF 173

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 47  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 106
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 107 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 165
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 166 KGLKNVF 172

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 51  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 170 KGLKNVF 176

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 46  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 105
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 106 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 164
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 165 KGLKNVF 171

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 51  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 110
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 111 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 169
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 170 KGLKNVF 176

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 RGLKNVF 169

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 12  IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMA 70
           ++DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  H       ++ 
Sbjct: 55  LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLV 113
Query: 71  GNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEATNVEKAF 113
           G + DL            N  + +T E    LA + + + ++E SAL    ++  F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 8   VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV 66
           V  +IWD  GQ R+R++   Y RG    + + D   R+  +     L  L D      I 
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 67  IMMAGNKSDL-NHLRAVTEEDGHSLAEKEGLSFLE--------TSALEATNVEKAFQTIL 117
           +++ GNK DL N L      D   L EK  LS ++         S  E  N++   Q ++
Sbjct: 127 VLVLGNKRDLPNAL------DEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           V+ K +   +WD  GQ+R R++   YYR   G + V D   R         + R L +  
Sbjct: 56  VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDE 115
Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL 96
             N V ++  NK DL    +  E     + EK GL
Sbjct: 116 LRNAVWLVFANKQDLPEAMSAAE-----ITEKLGL 145

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     + DTAGQE Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHA 61
           VE + +   +WD  GQ++ R +   YY    G + V D   R+  D+    L R + +  
Sbjct: 56  VEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEE 115
Query: 62  DSNIVIMMAGNKSDLNHLRAVTE 84
             + +I++  NK DL +  +  E
Sbjct: 116 LKDAIILVFANKQDLPNAMSAAE 138

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+ + V  ++ DTA  +  R     Y   A   L+VY +  RQ+FD+   +L  L  HA 
Sbjct: 64  VDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122
Query: 63  S---NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA-LEATNVEKAFQTILT 118
               +I  ++ GNK D+   R VT+ +G +LA + G  F E SA L+  +V+  F   + 
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182
Query: 119 E 119
           E
Sbjct: 183 E 183

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLR--E 56
           VE K +   +WD  GQ++ R +   Y++   G + V D   R    ++ D + + L+  E
Sbjct: 68  VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127
Query: 57  LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLET 101
           LRD      V+++  NK D+ +   V+E     L +K GL  L +
Sbjct: 128 LRDA-----VLLVFANKQDMPNAMPVSE-----LTDKLGLQHLRS 162

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAG E Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 44  VMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 104 HC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 162
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 163 KGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +++ G+     ++DTAG E Y  +    Y      L+ + +    +F+NV  +W+ E+  
Sbjct: 48  VMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 107
Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLA-EKEGLSFLETSALEA 106
           H       ++ G + DL            N  + +T E    LA + + + ++E SAL  
Sbjct: 108 HCPKT-PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ 166
Query: 107 TNVEKAF 113
             ++  F
Sbjct: 167 KGLKNVF 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-82
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-82
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-81
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-81
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-81
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-80
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-80
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-80
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-80
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-79
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-79
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-79
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-78
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-78
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-78
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-78
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-77
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-77
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-77
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-77
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-77
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-76
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-76
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-76
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-76
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-75
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	8e-75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-74
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-71
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-70
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-68
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-67
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-66
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-61
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-60
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-59
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-59
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	7e-59
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-59
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-57
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-56
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-56
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-55
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	7e-54
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-53
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-53
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	7e-53
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-52
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-52
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-51
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-51
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-51
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-50
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-50
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-49
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-48
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-46
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-30
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-30
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-30
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-27
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	8e-27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-26
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-25
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-25
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-23
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-20
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-09
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-09
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-09
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-08
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-08
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	5e-08
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-08
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-08
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-06
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-04
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  249 bits (638), Expect = 7e-86
 Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 5/159 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +A 
Sbjct: 52  LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 111

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           S ++ ++ GNK DL   R V  +     A+   + FLETSAL++TNVE AF T+  +I  
Sbjct: 112 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
            +S++ L     +  T        +N+   S +   GCC
Sbjct: 172 SMSQQNL-----NETTQKKEDKGNVNLKGQSLTNTGGCC 205

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  249 bits (638), Expect = 1e-85
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 8/167 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +EGK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYDI+K  +++N   WL ELR++AD
Sbjct: 57  IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD 116

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+ + + GNKSDL HLRAV  E+  + A++  L F ETSAL + NV+KAF+ ++  IY 
Sbjct: 117 DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176

Query: 123 IISKKALAAQQASANTALPG----QGTTINVNDASPSVKK----GCC 161
            +SK  +    +SAN    G     G TI++       KK     CC
Sbjct: 177 KVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  243 bits (622), Expect = 2e-83
 Identities = 97/151 (64%), Positives = 118/151 (78%), Gaps = 1/151 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAGQERYR ITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 49  VDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 108

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SNIVIM+ GNKSDL HLRAV  ++  + AEK  LSF+ETSAL++TNVE+AF+ ILTEIY 
Sbjct: 109 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDAS 153
           I+S+K +A + A   +        I+V   +
Sbjct: 169 IVSQKQIADRAAHDESP-GNNVVDISVPPTT 198

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  240 bits (615), Expect = 3e-82
 Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 3/153 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
              K +K QIWDTAG ERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ ++ 
Sbjct: 52  RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 111

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N  +++ GNK D+   R V+ E G  LA+  G  F E SA +  NV++ F+ ++  I  
Sbjct: 112 DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPS 155
            +S+    A  A        QG  +    A P 
Sbjct: 172 KMSESLDTADPAVTG---AKQGPQLTDQQAPPH 201

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  239 bits (612), Expect = 3e-82
 Identities = 66/131 (50%), Positives = 86/131 (65%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A 
Sbjct: 54  VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 113

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            NIVI++ GNK DL+  R VT  +    A++  L FLETSAL   NVE+AF     +I +
Sbjct: 114 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173

Query: 123 IISKKALAAQQ 133
            I    L  ++
Sbjct: 174 KIESGELDPER 184

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  238 bits (609), Expect = 1e-81
 Identities = 79/125 (63%), Positives = 97/125 (77%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+  V RWL+EL DHA+
Sbjct: 69  LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE 128

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           + IV+M+ GNKSDL+  R V  E+    AE  GL FLETSAL++TNVE AF+T+L EI+ 
Sbjct: 129 ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188

Query: 123 IISKK 127
            +SK+
Sbjct: 189 KVSKQ 193

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  237 bits (608), Expect = 2e-81
 Identities = 66/131 (50%), Positives = 87/131 (66%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V GKTVK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++++  WL + R  A 
Sbjct: 69  VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS 128

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            NIV+++ GNK DL+  R VT  +    A++  L FLETSAL   NVE+AF      I +
Sbjct: 129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188

Query: 123 IISKKALAAQQ 133
            I    L  ++
Sbjct: 189 KIDSGELDPER 199

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  237 bits (608), Expect = 3e-81
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 8/161 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAG ER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 58  MYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE 117

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +   +
Sbjct: 118 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177

Query: 121 YHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
             + S +  + +              +      P  + GC 
Sbjct: 178 PGMESTQDRSRED--------MIDIKLEKPQEQPVSEGGCL 210

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  237 bits (606), Expect = 3e-81
 Identities = 69/127 (54%), Positives = 90/127 (70%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R H+ 
Sbjct: 65  IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 124

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           SN+VIM+ GNKSDL   R V  E+G + A + GL F+ETSA  A NVE+AF     EIY 
Sbjct: 125 SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184

Query: 123 IISKKAL 129
            I +   
Sbjct: 185 KIQQGLF 191

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  235 bits (602), Expect = 9e-81
 Identities = 55/127 (43%), Positives = 83/127 (65%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V   TVK +IWDTAGQERY ++   YYRGA  A++V+D+T + +F+   +W++EL+  
Sbjct: 54  LAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ 113

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            + N+V+ +AGNKSDL   R VT ED  + A++ GL F+ETSA  ATNV++ F  I   +
Sbjct: 114 GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

Query: 121 YHIISKK 127
             +   +
Sbjct: 174 PRVQPTE 180

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  235 bits (603), Expect = 1e-80
 Identities = 62/135 (45%), Positives = 89/135 (65%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 60  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 119

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI  
Sbjct: 120 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179

Query: 123 IISKKALAAQQASAN 137
            +   A A     +N
Sbjct: 180 RMGPGATAGGAEKSN 194

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  235 bits (601), Expect = 2e-80
 Identities = 93/119 (78%), Positives = 105/119 (88%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+GKT+KAQIWDTAG ERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHAD
Sbjct: 73  VDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 132

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
           SNIVIM+ GNKSDL HLRAV  ++  + AEK GLSF+ETSAL++TNVE AFQTILTEIY
Sbjct: 133 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  234 bits (598), Expect = 5e-80
 Identities = 63/132 (47%), Positives = 88/132 (66%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA 
Sbjct: 52  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 111

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA    NVE AF T+  +I  
Sbjct: 112 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

Query: 123 IISKKALAAQQA 134
            + K   A    
Sbjct: 172 KMDKNWKATAAG 183

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  234 bits (599), Expect = 5e-80
 Identities = 51/132 (38%), Positives = 79/132 (59%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + G+ VK QIWDTAGQER+R+IT +YYR A   +L YDIT  ++F  +  WLRE+  +A 
Sbjct: 70  INGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 129

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
           + ++ ++ GNK DL   R V+++     +E + + +LETSA E+ NVEK F  +   +  
Sbjct: 130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189

Query: 123 IISKKALAAQQA 134
              +  L    +
Sbjct: 190 EARQNTLVNNVS 201

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  232 bits (595), Expect = 1e-79
 Identities = 62/120 (51%), Positives = 82/120 (68%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V G+ +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++  WL + R+  +
Sbjct: 59  VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 118

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N VI++ GNK+DL   R VT E+    AE+ GL FLE SA    NVE AF     +IY 
Sbjct: 119 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  232 bits (594), Expect = 2e-79
 Identities = 59/125 (47%), Positives = 81/125 (64%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+G  VK Q+WDTAGQER+R++T AYYR A   LL+YD+T + +FDN+  WL E+ ++A 
Sbjct: 55  VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            ++ +M+ GNK D  H R V  EDG  LA++ GL F+ETSA    NV+ AF  I  E+  
Sbjct: 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174

Query: 123 IISKK 127
              K 
Sbjct: 175 RSMKA 179

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  230 bits (589), Expect = 7e-79
 Identities = 53/121 (43%), Positives = 72/121 (59%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +  + +  K  IWDTAG ER+RA+   YYRG+  A++VYDITK +TF  +  W+RELR H
Sbjct: 48  VQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              +IV+ +AGNK DL  +R V E D    A+     F+ETSA  A N+ + F  I   I
Sbjct: 108 GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

Query: 121 Y 121
            
Sbjct: 168 P 168

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  230 bits (590), Expect = 1e-78
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +    K +K QIWDTAGQERYR IT+AYYRGA+G LL+YDI  +++F  V  W  +++ +
Sbjct: 64  VYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY 123

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           +  N  +++ GNK DL   R V  EDG  LA+  G  F E SA E  NV++ F+ ++  I
Sbjct: 124 SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

Query: 121 YHIISK 126
              +++
Sbjct: 184 CEKMNE 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  230 bits (588), Expect = 2e-78
 Identities = 52/127 (40%), Positives = 79/127 (62%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +    +  K  IWDTAGQER+ ++   YYRG+  A++VYDITK+ +F  + +W++EL++H
Sbjct: 65  VPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH 124

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              NIV+ +AGNK DL+ +R V  +D    AE  G   +ETSA  A N+E+ FQ I  +I
Sbjct: 125 GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

Query: 121 YHIISKK 127
             +   +
Sbjct: 185 PPLDPHE 191

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  228 bits (585), Expect = 3e-78
 Identities = 53/121 (43%), Positives = 78/121 (64%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++  TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A  NIVI ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

Query: 121 Y 121
            
Sbjct: 168 P 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  228 bits (584), Expect = 4e-78
 Identities = 47/121 (38%), Positives = 67/121 (55%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + GK V   IWDTAGQER+ A+   YYR + GA+LVYDIT   +F  V  W++ELR  
Sbjct: 48  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             + I + + GNK DL   R V+ ++  S AE  G     TSA +   +E+ F  +   +
Sbjct: 108 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

Query: 121 Y 121
            
Sbjct: 168 I 168

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  228 bits (584), Expect = 1e-77
 Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 1/125 (0%)

Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS 63
            G+ +  Q+WDTAG ER+R++T+A++R A+G LL++D+T  Q+F NV  W+ +L+ HA S
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 64  -NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N  I++ GNKSDL   RAV EE+   LAEK G+ + ETSA   TN+  A + +L  I  
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

Query: 123 IISKK 127
            + + 
Sbjct: 186 RMERS 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  229 bits (585), Expect = 1e-77
 Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 10/160 (6%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T  +TF N+ +W + + +HA+
Sbjct: 64  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN 123

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
               +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+   I  
Sbjct: 124 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182

Query: 123 IISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCS 162
            I    L            G G   N++  S S      +
Sbjct: 183 KIDSNKLVG---------VGNGKEGNISINSGSGNSSKSN 213

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  227 bits (581), Expect = 2e-77
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 1/132 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + G+ VK QIWDTAGQER+R ITS YYRG  G ++VYD+T  ++F NV RWL E+  +
Sbjct: 51  VEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN 110

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            D ++  ++ GNK+D    + V  ED +  A + G+   ETSA E  NVE+ F  I   +
Sbjct: 111 CD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

Query: 121 YHIISKKALAAQ 132
                      Q
Sbjct: 170 LRAKKDNLAKQQ 181

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  227 bits (580), Expect = 3e-77
 Identities = 55/123 (44%), Positives = 78/123 (63%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
              K VK QIWDTAGQERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ ++ 
Sbjct: 67  RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N  +++ GNK D+   R V  E G  LAE+ G  F E SA E  +V +AF+ ++  I  
Sbjct: 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186

Query: 123 IIS 125
            +S
Sbjct: 187 KMS 189

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  226 bits (579), Expect = 4e-77
 Identities = 46/121 (38%), Positives = 79/121 (65%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +TV+ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 56  MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE 115

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             S+++IM+ GNK+DL+  R V+ E+G   A++  + F+ETSA    NV++ F+ +   +
Sbjct: 116 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

Query: 121 Y 121
            
Sbjct: 176 P 176

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  226 bits (578), Expect = 4e-77
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 1   MIVEGK-TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL---RE 56
           + + G   V  QIWD  GQ     +   Y  GA G LLVYDIT  Q+F+N+  W    ++
Sbjct: 48  ITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107

Query: 57  LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           + + +++  ++ + GNK DL H+R +  E      ++ G S    SA    +V   FQ +
Sbjct: 108 VSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKV 167

Query: 117 LTEIYHIISKK 127
             EI  I   K
Sbjct: 168 AAEILGIKLNK 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  227 bits (581), Expect = 5e-77
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
            +G  +K  +WDTAGQE+   +   YY GA GA+L +D+T R T  N+ RW++E +    
Sbjct: 56  DQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG 115

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY- 121
           +   I++  NK D+ + + ++++    + + +   + E SA  A N    F  +      
Sbjct: 116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175

Query: 122 ----HIISKKALAAQQASANTALPGQGTTINVNDAS 153
                 +S   L   + + +   P +   I+  + +
Sbjct: 176 RPDLIFVSNVNLEPTEVNYDYHSPEESKYIDYMEQA 211

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  226 bits (579), Expect = 5e-77
 Identities = 59/120 (49%), Positives = 84/120 (70%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A 
Sbjct: 77  LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS 136

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N+  ++ GNK DL   + V        A+  G+ FLETSA  ATNVE++F T+  EI  
Sbjct: 137 ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  226 bits (577), Expect = 2e-76
 Identities = 54/136 (39%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS 63
           +   V  Q+WDTAGQER+R++T+A++R A+G LL++D+T +Q+F NV  W+ +L+ +A  
Sbjct: 80  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139

Query: 64  -NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
            N  I++ GNK+DL   R V E     LA+K G+ + ETSA    NVEKA +T+L  I  
Sbjct: 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199

Query: 123 IISKKALAAQQASANT 138
            + +     Q      
Sbjct: 200 RMEQCVEKTQIPDTVN 215

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  224 bits (574), Expect = 4e-76
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAGQER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 50  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 109

Query: 61  AD----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK DL + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 110 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

Query: 117 LTEIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
                   ++  L  +          +   ++ N+ + +  + C 
Sbjct: 170 ARNALKQETEVELYNE--------FPEPIKLDKNERAKASAESCS 206

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  224 bits (573), Expect = 5e-76
 Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 1/129 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++GK VK QIWDTAGQER+R IT +YYR A GA+L YDITKR +F +V  W+ ++R +A 
Sbjct: 73  IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 132

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY 121
           SNIV ++ GNKSDL+ LR V+  +  SLAE    L  +ETSA +++NVE+AF  + TE+ 
Sbjct: 133 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

Query: 122 HIISKKALA 130
                   +
Sbjct: 193 MRHGGPLFS 201

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  223 bits (570), Expect = 6e-76
 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 1/124 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK VK QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  +TF N+ +W + + +HA+
Sbjct: 47  INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 106

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
               +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+   I  
Sbjct: 107 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

Query: 123 IISK 126
            I  
Sbjct: 166 KIDS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  222 bits (569), Expect = 2e-75
 Identities = 50/120 (41%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           + GK ++ QIWDTAGQER+ +ITSAYYR A G +LVYDITK++TFD++ +W++ +  +A 
Sbjct: 70  LRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS 129

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEIY 121
            +  +++ GNK D    R +T + G   A++  G+ F E SA +  NV++ F  ++ +I 
Sbjct: 130 EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  220 bits (562), Expect = 8e-75
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V  + V+  +WDTAGQE + AIT AYYRGA   +LV+  T R++F+ +  W  ++   
Sbjct: 47  IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 106

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              +I   +  NK DL     +  E+   LA++  L F  TS  E  NV + F+ +  + 
Sbjct: 107 VG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

Query: 121 Y 121
            
Sbjct: 166 L 166

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  219 bits (560), Expect = 4e-74
 Identities = 54/140 (38%), Positives = 76/140 (54%), Gaps = 2/140 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G   K  IWDTAGQER+R +T +YYRGA G +LVYD+T+R TF  +  WL EL  +
Sbjct: 57  ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 116

Query: 61  ADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
              N IV M+ GNK D    R V   +G   A K  + F+E SA     V+ AF+ ++ +
Sbjct: 117 CTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 175

Query: 120 IYHIISKKALAAQQASANTA 139
           I           Q +  ++ 
Sbjct: 176 IIQTPGLWESENQNSGPSSG 195

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  219 bits (561), Expect = 4e-74
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 1   MIVEGKTVKAQIW--DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR 58
           + +   TV  +++  DTAG + Y+   S Y+ G   A+LV+D++  ++F++   W   L+
Sbjct: 64  VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123

Query: 59  D---HADSNIVIMMAGNKSDLNHLR-AVTEEDGHSLAEKEGLSFLETSA-LEATNVEKAF 113
                 +  +  ++  NK+DL   R  V  +     A    L F + SA     + +  F
Sbjct: 124 SARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPF 183

Query: 114 QTILTEIYHIISKKALAAQQASAN 137
            +I T  Y     K  A Q A  N
Sbjct: 184 LSIATTFYRNYEDKVAAFQDACRN 207

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  219 bits (559), Expect = 6e-74
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +IV+G+    Q+WDTAGQER+R+I  +Y+R A G LL+YD+T  ++F N+  W+  + D 
Sbjct: 70  LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA 129

Query: 61  ADSNIVIMMAGNKSDLNHL------RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ 114
           A   + IM+ GNK+D+         + V    G  LA   G  F ETSA + +N+ +A  
Sbjct: 130 AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVL 189

Query: 115 TILTEIY 121
            +  E+ 
Sbjct: 190 HLAREVK 196

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  212 bits (543), Expect = 1e-71
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 3   VEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA 61
           ++G+ +K Q+WDTAGQER+R ++   YYR     + VYD+T   +F ++  W+ E + H 
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123

Query: 62  DSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL---EATNVEKAFQTIL 117
            +N I  ++ GNK DL     V  +     A+   +   ETSA    +  +VE  F T+ 
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 183

Query: 118 TEIYH 122
            ++  
Sbjct: 184 HKLKS 188

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  208 bits (531), Expect = 5e-70
 Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 6/126 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +
Sbjct: 49  LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 108

Query: 61  AD----SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQT 115
           AD     +   ++ GNK D++  R V+ E+  +     G   + ETSA +ATNV  AF+ 
Sbjct: 109 ADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

Query: 116 ILTEIY 121
            +  + 
Sbjct: 168 AVRRVL 173

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  203 bits (519), Expect = 9e-68
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 3/121 (2%)

Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS 63
               +K  IWDTAGQERY +I   YYRGA  A++V+DI+   T D    W+ +L+    S
Sbjct: 89  NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISS 146

Query: 64  NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI 123
           N +I++  NK D N    V   +    A+   L F++TSA   TN++  F  +  EIY  
Sbjct: 147 NYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

Query: 124 I 124
           I
Sbjct: 206 I 206

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  202 bits (517), Expect = 3e-67
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 8/148 (5%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
                  +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L   
Sbjct: 57  FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV 116

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            + NI I++ GNK D+   +            K+ L + + SA    N EK F  +  ++
Sbjct: 117 CE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

Query: 121 Y-----HIISKKALAAQQASANTALPGQ 143
                   ++  ALA  +   + AL  Q
Sbjct: 174 IGDPNLEFVAMPALAPPEVVMDPALAAQ 201

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  198 bits (505), Expect = 6e-66
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 7/128 (5%)

Query: 1   MIVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD 59
           + V+G K    Q+WDTAGQER++++  A+YRGA   +LVYD+T   +F+N+  W  E   
Sbjct: 50  VTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109

Query: 60  HAD----SNIVIMMAGNKSDLNHL-RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAF 113
           HA+         ++ GNK D     + V+E+    LA+  G +    TSA  A NV+ AF
Sbjct: 110 HANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169

Query: 114 QTILTEIY 121
           + I     
Sbjct: 170 EEIARSAL 177

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  184 bits (470), Expect = 8e-61
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-R 58
           ++V+ + V   ++D   Q      +     +     L+V+ +T R++F  V   L  L  
Sbjct: 44  IMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103

Query: 59  DHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                ++ +++ GNKSDL   R V+ E+G  LA       +ETSA    N  + F+  + 
Sbjct: 104 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

Query: 119 EI 120
           +I
Sbjct: 164 QI 165

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  183 bits (468), Expect = 4e-60
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-R 58
           ++V+ + V   ++D   Q      +     +     L+V+ +T R++F  V   L  L  
Sbjct: 65  IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 124

Query: 59  DHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                ++ +++ GNKSDL   R V+ E+G  LA       +ETSA    N  + F+  + 
Sbjct: 125 GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

Query: 119 EIY 121
           +I 
Sbjct: 185 QIR 187

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  181 bits (462), Expect = 1e-59
 Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 45  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 104

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + A++  ++++ETSA    NV+K F  ++ E
Sbjct: 105 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164

Query: 120 IY 121
           I 
Sbjct: 165 IR 166

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  180 bits (459), Expect = 5e-59
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITS--AYYRGAVGALLVYDITKRQTFDNVLRWLREL- 57
           + V+G+     + DT   E+     S  +  +G    ++VY I  R +F++      +L 
Sbjct: 45  LTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR 104

Query: 58  RDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           R H   ++ I++ GNK+DL   R V+ E+G + A      F+ETSA    NV + F+ ++
Sbjct: 105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

Query: 118 TEIY 121
            ++ 
Sbjct: 165 RQLR 168

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  181 bits (461), Expect = 5e-59
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 174

Query: 120 IYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCC 161
           I     +          N     +         +  +++ CC
Sbjct: 175 I-----RARKMEDSKEKNGKKKRKSL-------AKRIRERCC 204

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  179 bits (457), Expect = 7e-59
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+G+     ++D   Q+  R +           ++VY +T + +F+       +LR  
Sbjct: 42  IVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             + ++ I++ GNKSDL   R V+ ++G + A      F+ETSA    NV+  F+ ++ +
Sbjct: 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161

Query: 120 I 120
           I
Sbjct: 162 I 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  180 bits (459), Expect = 8e-59
 Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           ++++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR 
Sbjct: 59  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
             D N+  ++ GNKSDL   R V+ E+  + AE+  ++++ETSA    NV+K F  ++ E
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE 178

Query: 120 IY 121
           I 
Sbjct: 179 IR 180

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  177 bits (451), Expect = 2e-57
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
           + +        + DTAGQ+ Y  +  ++  G  G +LVY +T   +F  +    ++    
Sbjct: 65  VTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
           H  + + +++ GNK+DL+  R V   +G  LAE  G +F+E+SA E    +  F  ++ E
Sbjct: 125 HGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE 184

Query: 120 IYHIISKK 127
           I  + +  
Sbjct: 185 IARVENSY 192

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  174 bits (442), Expect = 1e-56
 Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + +   TVK +IWDTAGQER+ ++   YYR A  AL+VYD+TK Q+F     W++EL + 
Sbjct: 45  VTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ 104

Query: 61  ADSNIVIMMAGNKSDLNHL---RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL 117
           A  +I+I + GNK D       R V  E+G  LAE++GL F ETSA    NV   F  I 
Sbjct: 105 ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIG 164

Query: 118 TEIY 121
            +I 
Sbjct: 165 EKIP 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  173 bits (440), Expect = 4e-56
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V+G   +  I DTAGQE + A+   Y R   G LLV+ I  RQ+F+ V +   + LR   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             +  +++ GNK+DL   R V   +  +      +++ E SA    NV++AF+ ++  +
Sbjct: 112 RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  173 bits (440), Expect = 1e-55
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 1   MIVEGKT---VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 57
           ++V+G++   +   +W+  G+  +  +     +     L+VY IT R +F+       +L
Sbjct: 80  LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 137

Query: 58  RDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           R    + +I I++ GNKSDL   R V+  +G + A      F+ETSA    NV++ F+ I
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

Query: 117 LTEIYHIISKK 127
           + ++      K
Sbjct: 198 VRQVRLRRDSK 208

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  167 bits (426), Expect = 7e-54
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     + L    
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E 
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  166 bits (422), Expect = 3e-53
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 1   MIVEGKT---VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL 57
           ++V+G++   +   +W+  G+  +  +     +     L+VY IT R +F+       +L
Sbjct: 49  LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 106

Query: 58  RDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           R    + +I I++ GNKSDL   R V+  +G + A      F+ETSA    NV++ F+ I
Sbjct: 107 RRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

Query: 117 LTEIYHIISKKALAAQQAS 135
           + ++      K    ++ +
Sbjct: 167 VRQVRLRRDSKEKNERRLA 185

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  165 bits (420), Expect = 3e-53
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V+      +I DTAG E++ ++   Y +   G +LVY +  +Q+F ++     + +R   
Sbjct: 46  VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              + +++ GNK DL   R V+  +G +LAE+ G  F+ETSA   T V++ F  I+ ++
Sbjct: 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  164 bits (418), Expect = 7e-53
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +  +      QI DT G  ++ A+           +LVY IT RQ+ + +     ++ + 
Sbjct: 44  ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI 103

Query: 61  ADS--NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                +I IM+ GNK D +  R V   +  +LA     +F+ETSA    NV++ FQ +L 
Sbjct: 104 KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

Query: 119 EI 120
             
Sbjct: 164 LE 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  164 bits (418), Expect = 1e-52
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++ +     + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ + +    D
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120

Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEI 120
             +  +++  NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  163 bits (415), Expect = 2e-52
 Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNKSDL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

Query: 120 I 120
           I
Sbjct: 163 I 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  161 bits (410), Expect = 3e-51
 Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD- 59
           +  +      QI DT G  ++ A+           +LV+ +T +Q+ + +    + +   
Sbjct: 49  ISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQI 108

Query: 60  -HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
             +  +I +M+ GNK D    R V   +  ++A++   +F+ETSA    NV++ FQ +LT
Sbjct: 109 KGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

Query: 119 EIYHIISKKALAAQQASANTALPGQGTTINVNDASPSVKKGCCS 162
                  ++ ++       +    +              KG C+
Sbjct: 168 LET----RRNMSLNIDGKRSGKQKR----------TDRVKGKCT 197

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  159 bits (406), Expect = 5e-51
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHA 61
           V+ +    +I DTAG E++ A+   Y +   G  LVY IT + TF+++     + LR   
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105

Query: 62  DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 120
             ++ +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +I
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  159 bits (405), Expect = 9e-51
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 6/134 (4%)

Query: 4   EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHAD 62
             + +   +WD AG+E + +    +       L VYD++K Q   D +  WL  ++  A 
Sbjct: 52  RKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS 111

Query: 63  SNIVIMMAGNKSDLN---HLRAVTEEDGHSLAEKEGLSFL-ETSALEATNVEKAFQTILT 118
            +  +++ G   D++     +A   +    L  K G   + +   + AT    A   +  
Sbjct: 112 -SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRK 170

Query: 119 EIYHIISKKALAAQ 132
            I +      +  Q
Sbjct: 171 TIINESLNFKIRDQ 184

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  159 bits (404), Expect = 2e-50
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   D
Sbjct: 64  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD 123

Query: 63  S-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           S ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct: 124 SDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  158 bits (401), Expect = 4e-50
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++  
Sbjct: 45  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRV 104

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ E
Sbjct: 105 KDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE 163

Query: 120 I 120
           I
Sbjct: 164 I 164

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  155 bits (394), Expect = 5e-49
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             V+ + V  ++ DTA  +  R     Y   A   L+VY +  RQ+FD+   +L  L  H
Sbjct: 62  ETVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH 120

Query: 61  A---DSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQTI 116
           A     +I  ++ GNK D+   R VT+ +G +LA + G  F E SA     +V+  F   
Sbjct: 121 AKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180

Query: 117 LTEI 120
           + E 
Sbjct: 181 VREA 184

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  153 bits (389), Expect = 4e-48
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
             ++ + V  +I DTAGQE        + R   G +LVYDIT R +F+ VL         
Sbjct: 69  ATIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA-TNVEKAFQTILT 118
               N+ +++ GNK+DL+H R V+ E+G  LA +   +F E SA     N+ + F  +  
Sbjct: 128 KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 187

Query: 119 EI 120
           E+
Sbjct: 188 EV 189

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  156 bits (395), Expect = 6e-46
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 4/120 (3%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
            E K      WD  GQE   A    +   +   +L+ D     T  N   WLR +  +  
Sbjct: 93  DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG 149

Query: 63  SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 122
               +++  NK D N    + ++  +         F   S      VE   +++ + + H
Sbjct: 150 -KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH 208

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  142 bits (361), Expect = 4e-44
 Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 9/124 (7%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+G++    I D  G    +     +       + V+ +    +F  V  +   L   
Sbjct: 60  IVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF 114

Query: 61  ADS-NIVIMMAGNKSDLN--HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTI 116
            ++  + +++ G +  ++  + R + +     L+      ++ ET A    NVE+ FQ +
Sbjct: 115 RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDV 174

Query: 117 LTEI 120
             ++
Sbjct: 175 AQKV 178

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  138 bits (351), Expect = 1e-42
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LREL 57
           M+V+G+T    I + AG    +     +   A   + V+ +    +F  V R    L  L
Sbjct: 47  MLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101

Query: 58  RDHADSNIVIMMAG--NKSDLNHLRAVTEEDGHSL-AEKEGLSFLETSALEATNVEKAFQ 114
           R      + + + G  ++   +  R V +    +L A+ +  S+ ET A    NV++ FQ
Sbjct: 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161

Query: 115 TILTEIYHIISKKALAA 131
            +  ++  +  ++ L A
Sbjct: 162 EVAQKVVTLRKQQQLLA 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  115 bits (290), Expect = 3e-33
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           M  + +     +WDTAGQE Y  +    Y  +   LL + +  R +FDN+  +W  E++ 
Sbjct: 64  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123

Query: 60  HADSNIVIMMAGNKSDL--NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQT 115
           + D     ++ G K DL  +    VT+++G  L +K G ++++E S++    + + F+ 
Sbjct: 124 YID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  109 bits (274), Expect = 1e-30
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V+G+ V   +WDTAGQE Y  +    YRGA   +L + +  + +++NVL +W+ ELR 
Sbjct: 50  VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109

Query: 60  HADSNIVIMMAGNKSDL--------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVE 110
            A  N+ I++ G K DL        +H   +T   G  L ++ G  +++E S+    NV+
Sbjct: 110 FAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

Query: 111 KAFQTILTEIYHIISKK 127
             F T +  +     +K
Sbjct: 169 AVFDTAIKVVLQPPRRK 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  108 bits (272), Expect = 1e-30
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V G TV   +WDTAGQE Y  +    YRGA   +L + +  + +++NV  +W+ EL+ 
Sbjct: 49  VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108

Query: 60  HADSNIVIMMAGNKSDL----------NHLRAVTEEDGHSLAEKEG-LSFLETSALEATN 108
           +A   + I++ G K DL               +T   G  L +  G  +++E S+    N
Sbjct: 109 YAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167

Query: 109 VEKAFQT 115
           V+  F  
Sbjct: 168 VKGVFDA 174

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  108 bits (272), Expect = 4e-30
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 48/164 (29%)

Query: 4   EGKTVKAQIW-------DTAGQERYRAITSAYYRGAV----------------------- 33
           +    K  I        D   Q         Y + A                        
Sbjct: 91  DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150

Query: 34  --------------GALLVYDITK--RQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDL 76
                         G LL  D+++   + FD+ L+++  L +        I++   K D 
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 77  NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              R + +    +L+ K+ L  +ETSA    NV+ AF T++  I
Sbjct: 211 GVERYIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLVQLI 253

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  105 bits (264), Expect = 4e-29
 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V+GK V   IWDTAGQ+ Y  +   +Y  A   LL +D+T   +FDN+  RW  E+  
Sbjct: 75  LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH 134

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
                + I++ G K+DL            N L  VT   G  +A   G +++LE SA   
Sbjct: 135 FCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLH 193

Query: 107 TNVEKAFQT 115
            NV   FQ 
Sbjct: 194 DNVHAVFQE 202

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  103 bits (259), Expect = 1e-28
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V+GK V+  +WDTAGQE Y  +    Y      L+ + I    + +N+  +W  E++ 
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
               N+ I++ GNK DL                 V  E+G  +A +     +LE SA   
Sbjct: 126 FC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184

Query: 107 TNVEKAFQT 115
             V + F+ 
Sbjct: 185 EGVREVFEM 193

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  102 bits (257), Expect = 3e-28
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V+GK V+  +WDTAGQE Y  +    Y      L+ + +    + +N+  +W+ E++ 
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH 125

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
               N+ I++  NK DL                 V  +DG ++A +     +LE SA   
Sbjct: 126 FCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184

Query: 107 TNVEKAFQT 115
             V + F+T
Sbjct: 185 EGVREVFET 193

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 99.8 bits (249), Expect = 4e-27
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y      L+ + +    +F+NV  +W  E+R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 131 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189

Query: 107 TNVEKAFQT 115
             ++  F  
Sbjct: 190 RGLKTVFDE 198

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 99.0 bits (247), Expect = 8e-27
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V+G+ V+ Q+ DTAGQ+ +  +    Y      LL + +    +F NV  +W+ E+R 
Sbjct: 61  VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H      I++ G +SDL               + V EE    LAE+    S++E SAL  
Sbjct: 121 HCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQ 179

Query: 107 TNVEKAFQT 115
            N+++ F  
Sbjct: 180 KNLKEVFDA 188

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 96.4 bits (240), Expect = 7e-26
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV  +W  E+R 
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164

Query: 107 TNVEKAFQT 115
             ++  F  
Sbjct: 165 RGLKTVFDE 173

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 96.4 bits (240), Expect = 1e-25
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 16/130 (12%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
             ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E+++
Sbjct: 69  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
               N  +++ G KSDL            +    V+ + G ++A++ G  +++E SAL++
Sbjct: 129 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 187

Query: 107 TN-VEKAFQT 115
            N V   F  
Sbjct: 188 ENSVRDIFHV 197

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 95.5 bits (238), Expect = 1e-25
 Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 16/130 (12%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
             ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL +W  E+++
Sbjct: 48  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
               N  +++ G KSDL            +    V+ + G ++A++ G  +++E SAL++
Sbjct: 108 FC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166

Query: 107 TN-VEKAFQT 115
            N V   F  
Sbjct: 167 ENSVRDIFHV 176

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 94.1 bits (234), Expect = 6e-25
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           + V GK     ++DTAGQE Y  +    Y      L+ + +    +F NV   W+ EL++
Sbjct: 59  VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           +A  N+  ++ G + DL               + +  E G  LA++ G   ++E SAL  
Sbjct: 119 YAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 177

Query: 107 TNVEKAFQTIL 117
             ++  F   +
Sbjct: 178 KGLKTVFDEAI 188

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 91.1 bits (226), Expect = 1e-23
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 16/130 (12%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           +  E + V+  +WDT+G   Y  +    Y  +   LL +DI++ +T D+ L +W  E+ D
Sbjct: 68  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSAL-E 105
           +   +  +++ G K+DL                 ++ E G ++A++ G   +LE SA   
Sbjct: 128 YCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186

Query: 106 ATNVEKAFQT 115
             ++   F+T
Sbjct: 187 EKSIHSIFRT 196

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 85.4 bits (211), Expect = 1e-20
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 15/129 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRD 59
           ++V+GK V   +WDTAG E Y  +    Y      L+ + +    +F +V  +W  E+R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255

Query: 60  HADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEA 106
           H   N  I++ G K DL              L  +T   G ++A++ G + +LE SAL  
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314

Query: 107 TNVEKAFQT 115
             ++  F  
Sbjct: 315 RGLKTVFDE 323

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 14/135 (10%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-----LRWLREL 57
           V+G   +  ++   GQ  Y A      RG  G + V D    +   N      +R     
Sbjct: 69  VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE 128

Query: 58  RDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS----FLETSALEATNVEKAF 113
                 ++ I++  NK DL    A+  E    +            LE  A E   V +  
Sbjct: 129 YGLTLDDVPIVIQVNKRDLPD--ALPVEM---VRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 114 QTILTEIYHIISKKA 128
           + +   +   ++  +
Sbjct: 184 KEVSRLVLARVAGGS 198

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VE K +   +WD  GQ++ R +   Y++   G + V D   R+        L+++    +
Sbjct: 68  VEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE 127

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL--------ETSALEATNVEKAF 113
             + V+++  NK D+ +  A+   +   L +K GL  L         T A + T +    
Sbjct: 128 LRDAVLLVFANKQDMPN--AMPVSE---LTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

Query: 114 QTILTEI 120
             +  E+
Sbjct: 183 DWLSHEL 189

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +    V  ++WD  GQ R+R++   Y RG    + + D   ++  +     L  L D   
Sbjct: 62  ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ 121

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL--------ETSALEATNVEKAF 113
              I +++ GNK DL    A+ E++   L EK  LS +          S  E  N++   
Sbjct: 122 LQGIPVLVLGNKRDLPG--ALDEKE---LIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

Query: 114 Q 114
           Q
Sbjct: 177 Q 177

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 18/138 (13%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           ++ K +  ++WD  GQ   R     Y+      + V D T R         L  L D  +
Sbjct: 61  LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE 120

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
               ++++  NK DL    A +E +   +AE+ G+S         +++S+     + +  
Sbjct: 121 LRKSLLLIFANKQDLPD--AASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

Query: 114 QTILTEIYHIISKKALAA 131
             ++      + ++ L A
Sbjct: 176 DWLVER----LREQGLGA 189

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 51.5 bits (123), Expect = 8e-09
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 8   VKAQIWDTAGQERYRAITS---AYYRGAVGALLVYDITKRQT--FDNVLRWLRELRDHAD 62
           V  QIWD  GQ  +   T      +RG    + V D           +   + +     +
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-N 127

Query: 63  SNIVIMMAGNKSDL-----------NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK 111
            ++   +  +K D            +  +   ++   +  EK  LSF  TS  + + + +
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFE 186

Query: 112 AFQTILTEI 120
           AF  ++ ++
Sbjct: 187 AFSKVVQKL 195

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +  K +K  +WD  GQ   R     YY      + V D T +       + L  +    +
Sbjct: 57  LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
             +  +++  NK D     A++  +   ++++  L          + +SA++   + +  
Sbjct: 117 LQDAALLVFANKQDQPG--ALSASE---VSKELNLVELKDRSWSIVASSAIKGEGITEGL 171

Query: 114 QTILTEI 120
             ++  I
Sbjct: 172 DWLIDVI 178

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-- 60
            +  ++   ++D +GQ RYR +   YY+     + V D + R         L  L +H  
Sbjct: 62  FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPD 121

Query: 61  -ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEK 111
                I I+   NK DL    AVT      +++   L            + A++   +++
Sbjct: 122 IKHRRIPILFFANKMDLRD--AVTSVK---VSQLLCLENIKDKPWHICASDAIKGEGLQE 176

Query: 112 AFQTILTEI 120
               +  +I
Sbjct: 177 GVDWLQDQI 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V  K +K Q+WD  G    R     YY      + V D   R         L  + +  +
Sbjct: 46  VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 105

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
               ++++  NK D+    A+T  +   +A   GL           +TSA + T +++A 
Sbjct: 106 LRKAILVVFANKQDMEQ--AMTSSE---MANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

Query: 114 QTILTEI 120
           + ++  +
Sbjct: 161 EWLVETL 167

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +E +  K  IWD  GQ+  R+    Y+    G + V D   RQ   +  R L+ L     
Sbjct: 57  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
            +   +++  NK DL    A++      + E   L             SA+   ++    
Sbjct: 117 LAGATLLIFANKQDLPG--ALSCNA---IQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

Query: 114 QTILTEI 120
             +L +I
Sbjct: 172 DWLLDDI 178

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VE K +   +WD  GQ++ R +   Y++   G + V D   R+  +     L  +    +
Sbjct: 39  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
             + V+++  NK DL +  A+   +   + +K GL            T A     + +  
Sbjct: 99  LRDAVLLVFANKQDLPN--AMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

Query: 114 QTILTEI 120
             +  ++
Sbjct: 154 DWLSNQL 160

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           V+ +  K  +WD  GQ + R    +Y+      + V D   R+ F+   + L EL +   
Sbjct: 55  VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 114

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
            S + +++  NK DL    A    +   +AE   L             SAL    V+   
Sbjct: 115 LSCVPVLIFANKQDLLT--AAPASE---IAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

Query: 114 QTILTEI 120
             +   +
Sbjct: 170 NWVCKNV 176

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +     +  +WD  GQE  R+  + YY      ++V D T R+        L ++  H D
Sbjct: 55  IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 114

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
                +++  NK D+     +T  +   +++   L+             AL    + +  
Sbjct: 115 LRKAGLLIFANKQDVKE--CMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169

Query: 114 Q 114
           +
Sbjct: 170 E 170

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +     +  +WD  GQE  R+  + YY      ++V D T R+        L ++  H D
Sbjct: 60  IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 119

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
                +++  NK D+     +T  +   +++   L+             AL    + +  
Sbjct: 120 LRKAGLLIFANKQDVKE--CMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

Query: 114 QTILTEI 120
           + +++ +
Sbjct: 175 EWMMSRL 181

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 14/127 (11%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           VE K +   +WD  GQ++ R +   Y++   G + V D   R+  +     L  +    +
Sbjct: 204 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS--------FLETSALEATNVEKAF 113
             + V+++  NK DL +  A+   +   + +K GL            T A     + +  
Sbjct: 264 LRDAVLLVFANKQDLPN--AMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318

Query: 114 QTILTEI 120
             +  ++
Sbjct: 319 DWLSNQL 325

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +    +    +D  G  + R +   Y     G + + D    +        L  L     
Sbjct: 64  LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET 123

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS 102
            +N+ I++ GNK D     A++EE    L E  GL    T 
Sbjct: 124 IANVPILILGNKIDRPE--AISEER---LREMFGLYGQTTG 159

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
           +    +K   +D  G  + R +   Y+    G + + D    + FD     L  L + A+
Sbjct: 62  LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 121

Query: 63  -SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS 97
             ++  ++ GNK D  +  AV+E +   L    GL 
Sbjct: 122 LKDVPFVILGNKIDAPN--AVSEAE---LRSALGLL 152

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 19/135 (14%)

Query: 5   GKTVKAQIWDTAGQERYRAIT-----SAYYRGAVGALLVYDITKRQTFDNVLRW---LRE 56
              +   +WD  GQ+ +            ++     + V+D+   +   ++  +   L++
Sbjct: 49  LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

Query: 57  LRDHADSNIVIMMAGNKSDL--NHLRAVTEEDGHSLAEKE-------GLSFLETSALEAT 107
           LR ++  +  I +  +K DL     R    +       +         L    TS  + +
Sbjct: 109 LRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES 167

Query: 108 NVEKAFQTILTEIYH 122
            + KA+  I+  +  
Sbjct: 168 -LYKAWSQIVCSLIP 181

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL--LVYDI---TKRQTFDNV----LRW 53
            +       + D  G  + R   S Y +     +  L++ +      +         +  
Sbjct: 50  ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109

Query: 54  LRELRDHADSNIVIMMAGNKSDL 76
           L       ++ I I++A NKS+L
Sbjct: 110 LSITESSCENGIDILIACNKSEL 132

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL--LVYDI---TKRQTFDNV----LRW 53
            +       + D  G  + R   S Y +     +  L++ +      +         +  
Sbjct: 86  ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 145

Query: 54  LRELRDHADSNIVIMMAGNKSDL 76
           L       ++ I I++A NKS+L
Sbjct: 146 LSITESSCENGIDILIACNKSEL 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 39  YDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGN-KSDL 76
           Y++++ Q +  + + L ELR     N++I  + G+ K+ +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWV 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.94
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.93
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.93
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.93
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.92
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.92
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.92
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.92
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.92
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.91
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.91
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.91
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.91
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.9
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.9
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.9
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.9
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.9
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.89
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.89
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.88
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.88
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.88
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.87
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.86
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.86
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.85
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.75
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.84
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.83
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.81
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.81
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.81
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.8
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.76
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.72
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.72
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.71
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.7
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.7
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.69
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.69
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.69
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.67
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.66
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.65
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.65
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.63
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.62
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.61
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.61
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.61
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.6
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.59
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.58
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.58
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.57
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.57
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.56
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.53
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.51
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.51
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.51
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.49
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.48
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.48
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.48
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.48
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.47
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.46
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.46
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.44
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.43
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.43
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.43
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.41
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.4
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.4
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.39
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.36
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.36
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.32
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.32
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.32
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.31
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.3
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.3
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.27
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.24
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.23
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.22
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.18
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.17
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.17
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.16
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.13
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.11
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.11
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.11
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.06
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.05
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.03
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.03
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.0
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.95
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.91
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.84
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.81
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.77
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.76
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.74
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.69
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.5
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.5
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.49
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.4
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.37
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.35
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.05
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.48
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.29
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.66
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.03
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.73
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.56
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	94.65
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.6
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.59
3end_A	307	Light-independent protochlorophyllide reductase ir	94.39
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.34
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	93.05
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	92.58
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	92.52
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	92.11
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.58
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	90.83
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.71
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	89.87
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	89.67
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	89.42
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.51
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	85.22
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	84.39
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	83.43
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	82.49

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.5e-33  Score=201.07  Aligned_cols=124  Identities=35%  Similarity=0.676  Sum_probs=113.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.++||||+|+++|..++..++++++++++|||++++.||+.+..|+..+......++|++|||||+|+.+.+.
T Consensus        56 ~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~  135 (216)
T 4dkx_A           56 YLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQ  135 (216)
T ss_dssp             ECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCC
T ss_pred             EecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCc
Confidence            35788899999999999999999999999999999999999999999999999999887767899999999999988899


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      ++.++++.+++.+++.|+++||++|.||+++|+.|++.+.....
T Consensus       136 V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          136 VSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             ccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999988866543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=2.5e-26  Score=164.74  Aligned_cols=127  Identities=46%  Similarity=0.787  Sum_probs=114.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        51 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  130 (206)
T 2bcg_Y           51 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV  130 (206)
T ss_dssp             EETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred             EECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence            35778889999999999999999999999999999999999999999999999998877655799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKA  128 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  128 (163)
                      +..+++..++...+++++++||++|.|++++|+++.+.+........
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  177 (206)
T 2bcg_Y          131 VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN  177 (206)
T ss_dssp             SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHHH
T ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            88888899999999999999999999999999999999987655443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=165.02  Aligned_cols=123  Identities=34%  Similarity=0.555  Sum_probs=112.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        56 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (206)
T 2bov_A           56 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  135 (206)
T ss_dssp             EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred             EECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence            4577888999999999999999999999999999999999999999999999999887654 479999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+..+++..++...+++++++||++|.|++++|++|++.+....
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence            88888999999999999999999999999999999999987654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-26  Score=167.26  Aligned_cols=129  Identities=57%  Similarity=0.950  Sum_probs=109.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus        56 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~  135 (223)
T 3cpj_B           56 EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRA  135 (223)
T ss_dssp             EETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCC
T ss_pred             EECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence            35778889999999999999999999999999999999999999999999999998877555799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKALA  130 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~  130 (163)
                      +..+++..++...+++++++||+++.|++++|++|++.+.....++.+.
T Consensus       136 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          136 VPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC------
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccC
Confidence            8888899999999999999999999999999999999988766555443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.94  E-value=3.5e-25  Score=155.69  Aligned_cols=124  Identities=49%  Similarity=0.850  Sum_probs=99.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        51 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  130 (183)
T 2fu5_C           51 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQ  130 (183)
T ss_dssp             EETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCC
T ss_pred             EECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCc
Confidence            35778899999999999999999999999999999999999999999999999998876555799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +..++++.+++..+++++++||+++.|++++|+++.+.+.....
T Consensus       131 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          131 VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            88889999999999999999999999999999999998876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.93  E-value=7.5e-25  Score=156.94  Aligned_cols=122  Identities=52%  Similarity=0.799  Sum_probs=111.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus        72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~  151 (201)
T 2hup_A           72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE  151 (201)
T ss_dssp             EETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc
Confidence            35777889999999999999999999999999999999999999999999999998877655799999999999987778


Q ss_pred             CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +..++++++++..++ +++++||+++.|++++|++|++.+...
T Consensus       152 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          152 VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            888899999999999 999999999999999999999988653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.93  E-value=1.5e-24  Score=153.82  Aligned_cols=123  Identities=56%  Similarity=0.930  Sum_probs=112.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        64 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~  143 (191)
T 2a5j_A           64 NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD  143 (191)
T ss_dssp             EETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccc
Confidence            35778899999999999999999999999999999999999999999999999998877556799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..++++.+++..+++++++||+++.|++++|++|.+.+.+..
T Consensus       144 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          144 VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999887643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.2e-24  Score=156.11  Aligned_cols=123  Identities=41%  Similarity=0.699  Sum_probs=112.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.++||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~  148 (201)
T 2ew1_A           69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE  148 (201)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc
Confidence            36788899999999999999999999999999999999999999999999999998877656799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..++++.++...+++++++||++|.|++++|+++++.+....
T Consensus       149 v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          149 VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            8888888899888999999999999999999999999887643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.93  E-value=9e-25  Score=156.36  Aligned_cols=124  Identities=40%  Similarity=0.614  Sum_probs=107.9

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~   78 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.....    .++|+++|+||+|+. 
T Consensus        52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-  130 (207)
T 1vg8_A           52 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-  130 (207)
T ss_dssp             SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-
T ss_pred             ECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-
Confidence            466778999999999999999999999999999999999999999999999988876542    368999999999997 


Q ss_pred             cccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           79 LRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      .+.+..+++..++. ..+++++++||++|.|++++|++|.+.+......+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  180 (207)
T 1vg8_A          131 NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV  180 (207)
T ss_dssp             CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence            45667788888887 56789999999999999999999999988765444

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=150.87  Aligned_cols=125  Identities=42%  Similarity=0.727  Sum_probs=113.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+...+.
T Consensus        52 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~  130 (181)
T 3tw8_B           52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKV  130 (181)
T ss_dssp             EETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcc
Confidence            4577889999999999999999999999999999999999999999999999999877654 799999999999988788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      +..++...++...+++++++||++|.|++++|+++.+.+.....++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          131 VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            8888899999999999999999999999999999999987765443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.93  E-value=2.1e-24  Score=153.11  Aligned_cols=123  Identities=48%  Similarity=0.805  Sum_probs=113.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus        59 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~  138 (196)
T 3tkl_A           59 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV  138 (196)
T ss_dssp             EETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred             EECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence            45778899999999999999999999999999999999999999999999999999887666799999999999988788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..++.+.++...+++++++||+++.|++++|+++.+.+....
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          139 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             SCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            8888999999999999999999999999999999999887654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.93  E-value=1.5e-24  Score=152.62  Aligned_cols=125  Identities=52%  Similarity=0.789  Sum_probs=112.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus        53 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  132 (186)
T 2bme_A           53 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE  132 (186)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence            35777889999999999999999999999999999999999999999999999888776556799999999999977778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      +..+++..++...+++++++||+++.|++++|+++.+.+......
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          133 VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            888888999999999999999999999999999999988765533

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.93  E-value=4.2e-24  Score=150.47  Aligned_cols=124  Identities=33%  Similarity=0.585  Sum_probs=108.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||||++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +
T Consensus        46 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~  124 (189)
T 4dsu_A           46 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-R  124 (189)
T ss_dssp             EETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-C
T ss_pred             EECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-c
Confidence            4678889999999999999999999999999999999999999999999999998887544 5799999999999964 5


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      .+..+.+..+++..+++++++||++|.|++++|+++.+.+.....+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             SSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            6678889999999999999999999999999999999988765533

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.93  E-value=1.6e-24  Score=149.79  Aligned_cols=122  Identities=25%  Similarity=0.379  Sum_probs=96.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        43 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  122 (166)
T 3q72_A           43 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR  122 (166)
T ss_dssp             EETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred             EECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence            4678889999999999999999999999999999999999999999999999998877543 579999999999998878


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+..++.+.++...+++++++||++|.|++++|+++.+.+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          123 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=154.52  Aligned_cols=124  Identities=52%  Similarity=0.814  Sum_probs=112.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus        68 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  147 (200)
T 2o52_A           68 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE  147 (200)
T ss_dssp             EETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCC
T ss_pred             EECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc
Confidence            35777889999999999999999999999999999999999999999999999988776555799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +...++..+++..+++++++||++|.|++++|++|++.+.....
T Consensus       148 v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  191 (200)
T 2o52_A          148 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID  191 (200)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            88888999999999999999999999999999999998876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=149.33  Aligned_cols=123  Identities=26%  Similarity=0.380  Sum_probs=103.0

Q ss_pred             eecCEEEEEEEEeCCChhh--HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcc
Q 031238            2 IVEGKTVKAQIWDTAGQER--YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~   78 (163)
                      .+++..+.+.+|||+|++.  +..+...+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+
T Consensus        46 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~  125 (175)
T 2nzj_A           46 TVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR  125 (175)
T ss_dssp             EETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred             EECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence            4678889999999999987  567778889999999999999999999999999988876532 4689999999999987


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+.+..++++.++...+++++++||++|.|++++|++|.+.+....
T Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            7788888888898888999999999999999999999999886543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.92  E-value=3.3e-24  Score=149.69  Aligned_cols=120  Identities=52%  Similarity=0.870  Sum_probs=109.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  137 (179)
T 1z0f_A           58 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD  137 (179)
T ss_dssp             EETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence            35678889999999999999999999999999999999999999999999999988877656799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          138 VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            8888999999999999999999999999999999998774

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.92  E-value=3.5e-24  Score=153.16  Aligned_cols=127  Identities=24%  Similarity=0.442  Sum_probs=103.2

Q ss_pred             ecCE--EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCc
Q 031238            3 VEGK--TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLN   77 (163)
Q Consensus         3 ~~~~--~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~   77 (163)
                      +++.  .+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.
T Consensus        66 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  145 (208)
T 2yc2_C           66 IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP  145 (208)
T ss_dssp             CTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred             ECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence            3444  78999999999999999999999999999999999999999999999999988765   579999999999997


Q ss_pred             c-cccCCHHHHHHHHHHcCCcEEEeccCC-CCCHHHHHHHHHHHHHHHHhHhHH
Q 031238           78 H-LRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQTILTEIYHIISKKAL  129 (163)
Q Consensus        78 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~~~~~~~~~~~  129 (163)
                      . .+.+..+++..+++.++++++++||++ +.|++++|+++.+.+.+...++..
T Consensus       146 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~~~~  199 (208)
T 2yc2_C          146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVA  199 (208)
T ss_dssp             ----CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHhhHH
Confidence            7 677888899999999999999999999 999999999999998877655543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.92  E-value=3.4e-24  Score=150.13  Aligned_cols=120  Identities=46%  Similarity=0.793  Sum_probs=109.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus        56 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~  135 (181)
T 2efe_B           56 VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKV  135 (181)
T ss_dssp             ETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS
T ss_pred             ECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccC
Confidence            56778899999999999999999999999999999999999999999999999988776557999999999999877788


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++++.+++..+++++++||+++.|++++|++|.+.+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          136 TAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999887644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=2.1e-24  Score=149.66  Aligned_cols=121  Identities=26%  Similarity=0.376  Sum_probs=104.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|++.+.. ++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.
T Consensus        45 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  124 (169)
T 3q85_A           45 MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS  124 (169)
T ss_dssp             EETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred             EECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence            4678889999999999998876 777889999999999999999999999999999887654 47999999999999877


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.+..++++.+++..+++++++||+++.|++++|+++++.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          125 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999988754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=153.80  Aligned_cols=121  Identities=26%  Similarity=0.376  Sum_probs=108.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|++.+.. ++..+++++|++|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+...
T Consensus        66 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           66 MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             EETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred             EECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence            4688899999999999987754 778889999999999999999999999999998877653 47999999999999877


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.+..++++.+++..+++++++||+++.|++++|+++++.+..
T Consensus       146 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          146 REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            7888889999999999999999999999999999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=3.3e-24  Score=150.08  Aligned_cols=121  Identities=48%  Similarity=0.805  Sum_probs=102.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+...+.
T Consensus        54 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  133 (180)
T 2g6b_A           54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV  133 (180)
T ss_dssp             EETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc
Confidence            45778889999999999999999999999999999999999999999999999998877655799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..++++.+++..+++++++||+++.|++++|+++.+.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          134 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            88888899999899999999999999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.92  E-value=6.2e-24  Score=151.81  Aligned_cols=124  Identities=41%  Similarity=0.748  Sum_probs=112.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus        52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~  131 (203)
T 1zbd_A           52 RNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV  131 (203)
T ss_dssp             ETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS
T ss_pred             ECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccccc
Confidence            46778899999999999999999999999999999999999999999999999988776557999999999999877778


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      ..+++..+++..+++++++||+++.|++++|++|.+.+.....+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  175 (203)
T 1zbd_A          132 SSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSE  175 (203)
T ss_dssp             CHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            88889999999999999999999999999999999988775433

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=4.5e-24  Score=151.03  Aligned_cols=121  Identities=45%  Similarity=0.769  Sum_probs=110.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus        66 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~  145 (189)
T 2gf9_A           66 RHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVV  145 (189)
T ss_dssp             ETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred             ECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCC
Confidence            46778899999999999999999999999999999999999999999999999988776557999999999999877778


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..++++.+++..+++++++||+++.|++++|++|.+.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          146 PAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             CHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=5.1e-24  Score=149.71  Aligned_cols=121  Identities=32%  Similarity=0.548  Sum_probs=110.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        60 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  139 (183)
T 3kkq_A           60 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR  139 (183)
T ss_dssp             EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred             EeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence            4578888999999999999999999999999999999999999999999999998876533 578999999999998878


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccC-CCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSAL-EATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..++++.+++.++++++++||+ ++.|++++|+++.+.+.+
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          140 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            889999999999999999999999 999999999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.2e-24  Score=154.29  Aligned_cols=121  Identities=45%  Similarity=0.762  Sum_probs=111.2

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+
T Consensus        67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~  146 (191)
T 3dz8_A           67 RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVV  146 (191)
T ss_dssp             ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred             ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc
Confidence            45667889999999999999999999999999999999999999999999999998876567999999999999887888


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..++++.++...+++++++||+++.|++++|+++++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          147 PTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             CHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999988664

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=5.5e-24  Score=154.04  Aligned_cols=122  Identities=27%  Similarity=0.374  Sum_probs=107.0

Q ss_pred             eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|... +..+...+++.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.
T Consensus        81 ~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~  160 (211)
T 2g3y_A           81 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC  160 (211)
T ss_dssp             EETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred             EECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence            4688889999999999887 56677788999999999999999999999999988887643 247999999999999877


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+..++++.++..++++++++||++|.|++++|+++++.+...
T Consensus       161 r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          161 REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            78888888888888899999999999999999999999887543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.92  E-value=2.5e-24  Score=149.30  Aligned_cols=120  Identities=39%  Similarity=0.674  Sum_probs=102.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        49 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  128 (170)
T 1z08_A           49 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH  128 (170)
T ss_dssp             ESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred             EECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc
Confidence            35677889999999999999999999999999999999999999999999999988776555799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          129 VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            8888999999999999999999999999999999998774

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.92  E-value=5.2e-24  Score=151.06  Aligned_cols=122  Identities=63%  Similarity=0.977  Sum_probs=110.9

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++++..++..+++++|++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+
T Consensus        69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~  148 (193)
T 2oil_A           69 LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV  148 (193)
T ss_dssp             ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS
T ss_pred             ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc
Confidence            46778899999999999999999999999999999999999999999999999988765557999999999999877778


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ..++++.++...+++++++||+++.|++++|++|.+.+.+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          149 PTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.92  E-value=5.6e-24  Score=147.19  Aligned_cols=119  Identities=45%  Similarity=0.769  Sum_probs=108.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus        49 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~  128 (170)
T 1r2q_A           49 CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA  128 (170)
T ss_dssp             EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred             EECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc
Confidence            35677889999999999999999999999999999999999999999999999998877555799999999999977777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..+++..++...+++++++||++|.|++++|++|.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          129 VDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888888889999999999999999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.3e-24  Score=150.91  Aligned_cols=121  Identities=41%  Similarity=0.765  Sum_probs=109.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        69 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~  148 (192)
T 2il1_A           69 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE  148 (192)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred             EECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence            35778899999999999999999999999999999999999999999999999888777656799999999999987778


Q ss_pred             CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..++++.+++.. +++++++||++|.|++++|++|.+.+.+
T Consensus       149 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8888888888874 7899999999999999999999988754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=3.5e-24  Score=150.30  Aligned_cols=122  Identities=34%  Similarity=0.493  Sum_probs=109.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+
T Consensus        48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  127 (181)
T 3t5g_A           48 TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER  127 (181)
T ss_dssp             EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred             EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence            4678889999999999999999999999999999999999999999999999988876644 478999999999998778


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+..++++.+++..+++++++||+++.|++++|+++++.+...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  170 (181)
T 3t5g_A          128 VISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM  170 (181)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred             eecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999887553

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.92  E-value=9e-24  Score=149.41  Aligned_cols=117  Identities=18%  Similarity=0.388  Sum_probs=104.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCc--c
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLN--H   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~--~   78 (163)
                      .+++..+.+.+|||+|++.+.     +++++|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.  .
T Consensus        61 ~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (184)
T 3ihw_A           61 VVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN  135 (184)
T ss_dssp             EETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred             EECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            568889999999999998876     78899999999999999999999999999987643 468999999999983  4


Q ss_pred             cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+.+..+++..++...+ +.++++||++|.|++++|+++++.+...
T Consensus       136 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          136 PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            57788899999999987 8999999999999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.92  E-value=8.6e-24  Score=145.85  Aligned_cols=120  Identities=34%  Similarity=0.581  Sum_probs=106.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        46 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  125 (168)
T 1u8z_A           46 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             EECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence            4577888999999999999999999999999999999999999999999999999887655 479999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          126 QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999998774

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=1.8e-23  Score=144.76  Aligned_cols=119  Identities=45%  Similarity=0.737  Sum_probs=108.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.
T Consensus        49 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~  128 (170)
T 1z0j_A           49 QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE  128 (170)
T ss_dssp             EETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC
T ss_pred             EECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc
Confidence            35677889999999999999999999999999999999999999999999999998877556799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..++...+++..+++++++||+++.|++++|+++.+.+
T Consensus       129 v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          129 VMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            888889999999999999999999999999999998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.91  E-value=1.2e-23  Score=147.72  Aligned_cols=123  Identities=34%  Similarity=0.555  Sum_probs=111.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        60 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  139 (187)
T 2a9k_A           60 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  139 (187)
T ss_dssp             EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred             EECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence            4577888999999999999999999999999999999999999999999999999887755 479999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+..++++.+++.++++++++||+++.|++++|++|.+.+....
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          140 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            78888999999999999999999999999999999999886543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.2e-24  Score=154.67  Aligned_cols=118  Identities=25%  Similarity=0.369  Sum_probs=103.9

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~   80 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +
T Consensus        51 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~  129 (199)
T 2gf0_A           51 CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-R  129 (199)
T ss_dssp             ETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-C
T ss_pred             ECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-c
Confidence            467788999999999999999999999999999999999999999988888877766543  3689999999999965 5


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..+++..++..++++++++||+++.|++++|+++++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          130 EVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             SSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             ccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            66778888888889999999999999999999999987663

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=7.5e-25  Score=157.68  Aligned_cols=122  Identities=33%  Similarity=0.617  Sum_probs=104.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+.+.+
T Consensus        51 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  129 (212)
T 2j0v_A           51 AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDK  129 (212)
T ss_dssp             ECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCH
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCc
Confidence            35777889999999999999999999999999999999999999999986 79888877654 78999999999986543


Q ss_pred             c--------CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 A--------VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .        +..+++..++..+++ +++++||+++.|++++|+++++.+....
T Consensus       130 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             cccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence            3        467888889988886 9999999999999999999999887644

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.91  E-value=7.4e-24  Score=146.74  Aligned_cols=119  Identities=48%  Similarity=0.867  Sum_probs=107.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+
T Consensus        47 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~  125 (170)
T 1g16_A           47 INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVV  125 (170)
T ss_dssp             SSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCS
T ss_pred             ECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCcc
Confidence            46677899999999999999999999999999999999999999999999999988776557999999999999 44667


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+++..+++..+++++++||+++.|++++|+++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          126 TADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE  165 (170)
T ss_dssp             CHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            7888888999999999999999999999999999988864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=9.5e-24  Score=146.04  Aligned_cols=119  Identities=45%  Similarity=0.745  Sum_probs=107.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL--   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~--   79 (163)
                      .+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...  
T Consensus        46 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  125 (170)
T 1ek0_A           46 TINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGG  125 (170)
T ss_dssp             EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC
T ss_pred             EECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc
Confidence            357788899999999999999999999999999999999999999999999999988776557999999999998655  


Q ss_pred             -ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 -RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       +.+..++.+.++...+++++++||+++.|++++|+++.+.+
T Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          126 ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence             66778888889998999999999999999999999988654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=150.12  Aligned_cols=122  Identities=30%  Similarity=0.517  Sum_probs=108.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcc--
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNH--   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~--   78 (163)
                      .+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+..  
T Consensus        62 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~  140 (201)
T 2q3h_A           62 SVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDV  140 (201)
T ss_dssp             EETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCH
T ss_pred             EECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhch
Confidence            35778899999999999999999999999999999999999999999986 79888877655 799999999999865  


Q ss_pred             ----------cccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           79 ----------LRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        79 ----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                                .+.+..+++..+++..++ +++++||+++.|++++|+++++.+....
T Consensus       141 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence                      256778888899988887 8999999999999999999999887654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=1e-23  Score=147.37  Aligned_cols=122  Identities=29%  Similarity=0.521  Sum_probs=109.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++++..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+
T Consensus        51 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  130 (181)
T 2fn4_A           51 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR  130 (181)
T ss_dssp             EETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            457778899999999999999999999999999999999999999999999998885543 3578999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+..+++..++...+++++++||+++.|++++|++|.+.+...
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          131 QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            8888889999999999999999999999999999999888653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.91  E-value=3.6e-24  Score=154.87  Aligned_cols=122  Identities=25%  Similarity=0.466  Sum_probs=107.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH-HHHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN-VLRWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++. +..|+..+..... +.|+++|+||+|+.+. 
T Consensus        69 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~  147 (214)
T 3q3j_B           69 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDL  147 (214)
T ss_dssp             EC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCH
T ss_pred             EECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccch
Confidence            356778899999999999999999999999999999999999999998 6899999887764 7999999999999653 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIYHII  124 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~  124 (163)
                                 +.+..+++..+++.+++ +++++||+++.| ++++|+.+++.+....
T Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             hhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence                       67889999999999999 999999999998 9999999999886543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.91  E-value=4.8e-24  Score=151.02  Aligned_cols=119  Identities=33%  Similarity=0.478  Sum_probs=104.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~   78 (163)
                      .+++..+.+.||||+|++.+..+ ..+++++|++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.+
T Consensus        63 ~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           63 TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             EETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             EECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence            45788899999999999988775 5789999999999999999999999999999887642   4689999999999987


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEecc-CCCCCHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSA-LEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~~~  121 (163)
                      .+.+..+++..+++..+++++++|| +++.|++++|+.+++.+.
T Consensus       142 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            7888889999999999999999999 899999999999998764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.91  E-value=3e-23  Score=145.16  Aligned_cols=120  Identities=20%  Similarity=0.361  Sum_probs=101.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLN-   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~-   77 (163)
                      .+++..+.+++|||+|+++     ..+++++|++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+. 
T Consensus        48 ~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (178)
T 2iwr_A           48 LVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  122 (178)
T ss_dssp             EETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred             EECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            4678889999999999976     3578899999999999999999999887666655432   478999999999993 


Q ss_pred             -ccccCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           78 -HLRAVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        78 -~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                       ..+.+..++++.++... +++++++||++|.|++++|+++.+.+......
T Consensus       123 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          123 SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence             45677888888888876 68999999999999999999999988775543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.91  E-value=1.9e-23  Score=148.38  Aligned_cols=120  Identities=27%  Similarity=0.527  Sum_probs=107.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+. 
T Consensus        65 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~  143 (194)
T 3reg_A           65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDG  143 (194)
T ss_dssp             EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTT
T ss_pred             EECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCC
Confidence            4678889999999999999999999999999999999999999999997 678888776654 6999999999998643 


Q ss_pred             -ccCCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 -RAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                       +.+..+++..+++..++. ++++||++|.|++++|+++++.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             TTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence             667889999999999987 9999999999999999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.91  E-value=9.2e-24  Score=147.40  Aligned_cols=120  Identities=38%  Similarity=0.711  Sum_probs=108.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.
T Consensus        57 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  136 (179)
T 2y8e_A           57 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  136 (179)
T ss_dssp             EETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC
T ss_pred             EECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc
Confidence            35778889999999999999999999999999999999999999999999999988876655799999999999987778


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.++...+++++++||+++.|++++|++|.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          137 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            8888888899989999999999999999999999987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.91  E-value=1.6e-23  Score=151.16  Aligned_cols=118  Identities=45%  Similarity=0.747  Sum_probs=107.5

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~  162 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER  162 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence            78899999999999999999999999999999999999999999999888766543 47999999999999877788888


Q ss_pred             HHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           86 DGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        86 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +++.+++..+++++++||+++.|++++|++|.+.+....
T Consensus       163 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          163 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999887654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.1e-23  Score=149.62  Aligned_cols=119  Identities=44%  Similarity=0.736  Sum_probs=108.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+
T Consensus        67 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v  146 (192)
T 2fg5_A           67 CGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV  146 (192)
T ss_dssp             CSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred             eCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc
Confidence            45677899999999999999999999999999999999999999999999999988776557999999999999776778


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ..++++.+++..+++++++||+++.|++++|++|.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          147 PLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             CHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999988664

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.91  E-value=1.2e-23  Score=145.23  Aligned_cols=118  Identities=32%  Similarity=0.537  Sum_probs=106.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.
T Consensus        46 ~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  125 (167)
T 1c1y_A           46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV  125 (167)
T ss_dssp             SSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC
T ss_pred             ECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc
Confidence            467788999999999999999999999999999999999999999999999988877543 4799999999999987777


Q ss_pred             CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..++++.+++.. +++++++||++|.|++++|+++.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          126 VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            8888899898887 78999999999999999999998876

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.8e-24  Score=152.99  Aligned_cols=121  Identities=28%  Similarity=0.495  Sum_probs=106.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.
T Consensus        67 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~  146 (201)
T 3oes_A           67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE  146 (201)
T ss_dssp             ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC
T ss_pred             ECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc
Confidence            456778899999999999999999999999999999999999999999999999877643 4689999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +..+++..++...+++++++||+++.|++++|++|.+.+...
T Consensus       147 v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          147 VQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             SCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            888999999999999999999999999999999999988654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.91  E-value=5.3e-23  Score=145.19  Aligned_cols=119  Identities=45%  Similarity=0.756  Sum_probs=108.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.||||+|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..
T Consensus        68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  147 (195)
T 3bc1_A           68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE  147 (195)
T ss_dssp             EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred             cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence            378999999999999999999999999999999999999999999999998887654 5799999999999987777888


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ++++.++...+++++++||+++.|++++|++|.+.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          148 EEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999887644

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=1.9e-23  Score=145.89  Aligned_cols=117  Identities=33%  Similarity=0.522  Sum_probs=104.2

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCe-EEEEeeCCCCcccccC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIV-IMMAGNKSDLNHLRAV   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iivv~nK~Dl~~~~~~   82 (163)
                      ..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....  .+.| +++|+||+|+.+.+.+
T Consensus        54 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~  133 (178)
T 2hxs_A           54 LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI  133 (178)
T ss_dssp             EEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred             CEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence            678999999999999999999999999999999999999999999999988876532  1344 8999999999877778


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+++..+++..+++++++||+++.|++++|++|.+.+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          134 KPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            8888999999999999999999999999999999987754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.1e-23  Score=148.08  Aligned_cols=119  Identities=29%  Similarity=0.509  Sum_probs=106.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+++.+. .|+..+....+ +.|+++|+||+|+... 
T Consensus        60 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  138 (194)
T 2atx_A           60 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDP  138 (194)
T ss_dssp             ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred             EECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence            34677789999999999999999999999999999999999999999987 78888887654 6899999999999653 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+..+++..+++.+++ +++++||++|.|++++|+++.+.++
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          139 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                       46778889999999888 8999999999999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.4e-23  Score=150.75  Aligned_cols=122  Identities=46%  Similarity=0.835  Sum_probs=109.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+ ..+.
T Consensus        63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~  141 (213)
T 3cph_A           63 DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRV  141 (213)
T ss_dssp             EETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCC
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccc
Confidence            357778899999999999999999999999999999999999999999999999888776557999999999999 4466


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..+++..+++.++++++++||+++.|++++|++|.+.+.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          142 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI  184 (213)
T ss_dssp             SCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            7788888899989999999999999999999999999886654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.91  E-value=1.4e-23  Score=145.10  Aligned_cols=119  Identities=34%  Similarity=0.572  Sum_probs=108.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.
T Consensus        48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~  126 (168)
T 1z2a_A           48 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSC  126 (168)
T ss_dssp             EETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCS
T ss_pred             EECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccCcccc
Confidence            3567788999999999999999999999999999999999999999999999998877653 689999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          127 IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            8888899999999999999999999999999999998775

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.91  E-value=2.8e-23  Score=146.94  Aligned_cols=120  Identities=33%  Similarity=0.636  Sum_probs=106.0

Q ss_pred             eecCEEEEEEEEeCCChhhHh-hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.||||+|++.+. .++..+++++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.
T Consensus        63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           63 DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             EETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             EECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            357788899999999999998 888999999999999999999999999999999988775 357999999999999877


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCC---CCHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEA---TNVEKAFQTILTEIY  121 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~~~  121 (163)
                      +.+..++++.++...+++++++||+++   .|++++|++|++.+.
T Consensus       143 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          143 IQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             ceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            788888899999999999999999999   999999999987764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=1.7e-23  Score=144.26  Aligned_cols=120  Identities=29%  Similarity=0.511  Sum_probs=108.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+
T Consensus        45 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (167)
T 1kao_A           45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence            4577888999999999999999999999999999999999999999999999988877643 479999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++++.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          125 EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            88888889999999999999999999999999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=149.43  Aligned_cols=120  Identities=39%  Similarity=0.666  Sum_probs=105.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc----
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN----   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----   77 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.    
T Consensus        71 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~  150 (199)
T 2p5s_A           71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAA  150 (199)
T ss_dssp             EETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHH
T ss_pred             EECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc
Confidence            4577888999999999999999999999999999999999999999999999998877655578999999999985    


Q ss_pred             --ccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           78 --HLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                        ..+.+..++++.++...+++++++||+++.|++++|++|++.+.
T Consensus       151 ~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          151 TEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence              34667788888999999999999999999999999999988764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.5e-23  Score=148.09  Aligned_cols=121  Identities=34%  Similarity=0.518  Sum_probs=108.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++. ...+..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+
T Consensus        70 ~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~  148 (196)
T 2atv_A           70 TIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR  148 (196)
T ss_dssp             EETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred             EECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc
Confidence            4577889999999999988 77788899999999999999999999999999988877643 479999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~~  123 (163)
                      .+..+++..+++..+++++++||+++. |++++|++|++.+.+.
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             CSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence            888899999999999999999999999 9999999999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.91  E-value=7.4e-23  Score=145.67  Aligned_cols=124  Identities=27%  Similarity=0.374  Sum_probs=105.9

Q ss_pred             eecCEEEEEEEEeCCChhh-HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQER-YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+|||+|... +..++..+++.+|++++|||++++.+|+.+..|+..+..... .+.|+++|+||+|+...
T Consensus        50 ~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  129 (192)
T 2cjw_A           50 MVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX  129 (192)
T ss_dssp             EETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred             EECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence            4688899999999999876 566778889999999999999999999999999888776532 46899999999999777


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +.+..++++.++..++++++++||++|.|++++|+++.+.+.....
T Consensus       130 r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~~  175 (192)
T 2cjw_A          130 REVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRD  175 (192)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHHS
T ss_pred             ccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhcc
Confidence            7788888888888888999999999999999999999998865543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.91  E-value=1.4e-23  Score=148.68  Aligned_cols=120  Identities=23%  Similarity=0.305  Sum_probs=104.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC------ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT------KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .+++..+.+++|||+|++.+..++..+++++|++|+|||++      +..++..+..|+..+.... .++|+++|+||+|
T Consensus        68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~-~~~piilv~NK~D  146 (198)
T 3t1o_A           68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL-DDVPIVIQVNKRD  146 (198)
T ss_dssp             CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCT-TSSCEEEEEECTT
T ss_pred             cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcccc-CCCCEEEEEEchh
Confidence            45678899999999999999999999999999999999999      5567777888887774322 4799999999999


Q ss_pred             CcccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +.+  .+..++++++++..++ +++++||+++.|++++|++|.+.+.+..
T Consensus       147 l~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          147 LPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             STT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             ccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            964  3678889999999998 9999999999999999999999887754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.90  E-value=6.8e-23  Score=142.99  Aligned_cols=120  Identities=36%  Similarity=0.650  Sum_probs=106.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~   77 (163)
                      .+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.....    .++|+++|+||+|+.
T Consensus        50 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           50 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            3577888999999999999999999999999999999999999999999999988876643    478999999999996


Q ss_pred             ccccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                       .+.+..+++..+++ ..+++++++||+++.|++++|+++++.+..
T Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          130 -ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             -SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             46677888888887 556899999999999999999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.90  E-value=1.4e-22  Score=143.22  Aligned_cols=122  Identities=34%  Similarity=0.589  Sum_probs=98.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.. +
T Consensus        63 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~  141 (190)
T 3con_A           63 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-R  141 (190)
T ss_dssp             EETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-C
T ss_pred             EECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-c
Confidence            4577888999999999999999999999999999999999999999999999988877654 4689999999999865 5


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      .+..++++++++..+++++++||+++.|++++|++|.+.+.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          142 TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            66788889999999999999999999999999999999886543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1e-22  Score=144.09  Aligned_cols=120  Identities=43%  Similarity=0.756  Sum_probs=107.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+
T Consensus        58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~  136 (195)
T 1x3s_A           58 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NR  136 (195)
T ss_dssp             EETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SC
T ss_pred             EECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-cc
Confidence            3577889999999999999999999999999999999999999999999999999877653 478999999999994 35


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..+++..+++..+++++++||+++.|++++|++|.+.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          137 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            677888888999999999999999999999999999988864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.90  E-value=4.1e-23  Score=149.17  Aligned_cols=120  Identities=35%  Similarity=0.597  Sum_probs=92.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+... 
T Consensus        76 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  154 (214)
T 2j1l_A           76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDK  154 (214)
T ss_dssp             EETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCH
T ss_pred             EECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccc
Confidence            45788899999999999999999999999999999999999999999986 78888877654 6899999999998654 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                                 +.+..+++..+++..++ +++++||++|.|++++|+++++.+..
T Consensus       155 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          155 SLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence                       25677888899999897 99999999999999999999988865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=6.9e-23  Score=143.90  Aligned_cols=119  Identities=31%  Similarity=0.592  Sum_probs=105.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.++..+. .|+..+....+ +.|+++|+||+|+... 
T Consensus        47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  125 (186)
T 1mh1_A           47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  125 (186)
T ss_dssp             EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCH
T ss_pred             EECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccc
Confidence            45788899999999999999999999999999999999999999999987 78888877655 7899999999998543 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+..+++..+++..++ +++++||++|.|++++|+++.+.+.
T Consensus       126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence                       46677888889998887 9999999999999999999998774

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.90  E-value=3e-23  Score=146.32  Aligned_cols=119  Identities=25%  Similarity=0.525  Sum_probs=104.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+.+. 
T Consensus        49 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~  127 (184)
T 1m7b_A           49 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDV  127 (184)
T ss_dssp             ECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCH
T ss_pred             EECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcch
Confidence            3567788999999999999999999999999999999999999999998 688888877654 6899999999999642 


Q ss_pred             -----------ccCCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEG-LSFLETSAL-EATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+..++++.+++.++ .+++++||+ ++.|++++|+.+++.++
T Consensus       128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence                       5677888999998887 699999998 68999999999998775

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.90  E-value=1.1e-22  Score=145.52  Aligned_cols=120  Identities=29%  Similarity=0.537  Sum_probs=105.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+... 
T Consensus        67 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  145 (201)
T 2gco_A           67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDE  145 (201)
T ss_dssp             EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCH
T ss_pred             EECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCc
Confidence            4577889999999999999999999999999999999999999999998 578887776554 6899999999998654 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                                 +.+..+++..+++..++ +++++||+++.|++++|++|.+.+++
T Consensus       146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             HHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence                       45777888889998888 89999999999999999999987753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.90  E-value=2.4e-23  Score=145.92  Aligned_cols=118  Identities=31%  Similarity=0.596  Sum_probs=97.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      +++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.
T Consensus        51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~  129 (182)
T 3bwd_D           51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQ  129 (182)
T ss_dssp             -------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHH
T ss_pred             ECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcc
Confidence            5677788999999999999999999999999999999999999999987 78888877654 789999999999865433


Q ss_pred             ----------CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 ----------VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                +..+++..+++..++ +++++||+++.|++++|+++.+.+.
T Consensus       130 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          130 FFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             HHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence                      467888889988886 9999999999999999999988763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.90  E-value=3.1e-22  Score=142.14  Aligned_cols=114  Identities=38%  Similarity=0.654  Sum_probs=103.2

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.....  .|+++|+||+| ...+.+..+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~  169 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEV  169 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHH
Confidence            8899999999999999999999999999999999999999999999998877644  89999999999 45567788899


Q ss_pred             HHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           88 HSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        88 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +.+++..+++++++||+++.|++++|++|.+.+.+..
T Consensus       170 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          170 QKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=5.5e-23  Score=147.86  Aligned_cols=119  Identities=25%  Similarity=0.543  Sum_probs=105.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+..   
T Consensus        71 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~  149 (205)
T 1gwn_A           71 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVS  149 (205)
T ss_dssp             SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHH
T ss_pred             ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchh
Confidence            467788999999999999999999999999999999999999999998 689888877654 689999999999964   


Q ss_pred             ---------cccCCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q 031238           79 ---------LRAVTEEDGHSLAEKEG-LSFLETSAL-EATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~l~~~~~~  122 (163)
                               .+.+..++++.+++..+ .+++++||+ ++.|++++|+.+++.+++
T Consensus       150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence                     25677888999998887 699999998 689999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.90  E-value=1.2e-22  Score=142.03  Aligned_cols=119  Identities=36%  Similarity=0.619  Sum_probs=94.4

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcc-c
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNH-L   79 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~-~   79 (163)
                      +..+.+.+|||+|++.+...+..+++++|++|+|||++++.+++.+..|+..+.....    .++|+++|+||+|+.. .
T Consensus        55 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  134 (182)
T 1ky3_A           55 DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK  134 (182)
T ss_dssp             SCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred             CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence            4567899999999999999999999999999999999999999999999988877643    4789999999999953 3


Q ss_pred             ccCCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAE-KEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        80 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+..+++..+++ ..+.+++++||++|.|++++|+++.+.+.+.
T Consensus       135 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          135 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            5567888888887 4567999999999999999999999888653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.89  E-value=3.6e-22  Score=137.27  Aligned_cols=119  Identities=34%  Similarity=0.615  Sum_probs=106.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +
T Consensus        45 ~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~  123 (166)
T 2ce2_X           45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-R  123 (166)
T ss_dssp             EETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-C
T ss_pred             EECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-c
Confidence            3567888999999999999999999999999999999999999999999999998877654 4699999999999865 5


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++.+.+++..+++++++||+++.|++++|+++.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            56788888899999999999999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=8.3e-23  Score=141.52  Aligned_cols=118  Identities=29%  Similarity=0.387  Sum_probs=105.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~   80 (163)
                      +++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.....  .+.|+++|+||+|+...+
T Consensus        46 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~  125 (172)
T 2erx_A           46 CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR  125 (172)
T ss_dssp             ETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred             ECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence            467778999999999999999999999999999999999999999988888888876543  368999999999998777


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+...+...++...+++++++||+++.|++++|+++.+.+
T Consensus       126 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          126 EVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            7888888888888899999999999999999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.4e-22  Score=143.53  Aligned_cols=120  Identities=28%  Similarity=0.534  Sum_probs=105.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+ ..|+..+....+ ++|+++|+||+|+... 
T Consensus        67 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  145 (207)
T 2fv8_A           67 EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDE  145 (207)
T ss_dssp             EETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCH
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccc
Confidence            3577889999999999999999999999999999999999999999998 678888776544 6899999999999654 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                                 +.+..+++..++...++ +++++||++|.|++++|++|.+.+..
T Consensus       146 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             cchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                       45677888888888887 89999999999999999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.89  E-value=1.2e-22  Score=146.63  Aligned_cols=119  Identities=29%  Similarity=0.515  Sum_probs=105.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..
T Consensus        58 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  137 (218)
T 4djt_A           58 GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISK  137 (218)
T ss_dssp             SCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCH
T ss_pred             CcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH
Confidence            34478999999999999999999999999999999999999999999999999887766799999999999987777888


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+..++...+++++++||++|.|++++|++|.+.+...
T Consensus       138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  176 (218)
T 4djt_A          138 KLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR  176 (218)
T ss_dssp             HHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            888888888899999999999999999999999887553

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.88  E-value=3.7e-24  Score=152.83  Aligned_cols=120  Identities=49%  Similarity=0.823  Sum_probs=98.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.
T Consensus        76 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~  155 (199)
T 3l0i_B           76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV  155 (199)
T ss_dssp             EETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC
T ss_pred             EECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc
Confidence            45778899999999999999999999999999999999999999999999999999777666799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.++...+++++++||+++.|++++|++|.+.+.
T Consensus       156 v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          156 VDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             CCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             CCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7767778888888999999999999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.88  E-value=1.4e-22  Score=145.46  Aligned_cols=118  Identities=31%  Similarity=0.584  Sum_probs=102.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++++. .|+..+..... +.|+++|+||+|+....
T Consensus        72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~  150 (204)
T 4gzl_A           72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  150 (204)
T ss_dssp             ECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECHHHHTCH
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhccch
Confidence            45777889999999999999999999999999999999999999999986 78888877654 78999999999986543


Q ss_pred             ------------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 ------------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                  .+..+++..+++..++ +++++||++|.|++++|+++.+.+
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             hhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                        3777888889998886 599999999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=1.3e-22  Score=144.13  Aligned_cols=118  Identities=17%  Similarity=0.289  Sum_probs=96.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--------CCCeEEEEeeCCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--------SNIVIMMAGNKSD   75 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piivv~nK~D   75 (163)
                      ++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|..+..|+..+.....        .++|+++|+||+|
T Consensus        59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D  138 (199)
T 4bas_A           59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD  138 (199)
T ss_dssp             EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred             EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence            34457899999999999999999999999999999999999999999999888866521        2689999999999


Q ss_pred             CcccccCCHHHHHH------HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHS------LAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        76 l~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.....  .++...      +++..+++++++||+++.|++++|++|.+.+...
T Consensus       139 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          139 AAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             STTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence            965422  222211      1144567899999999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.88  E-value=6.9e-23  Score=141.30  Aligned_cols=117  Identities=17%  Similarity=0.308  Sum_probs=92.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +...+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  .
T Consensus        40 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~  117 (164)
T 1r8s_A           40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--M  117 (164)
T ss_dssp             ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--C
T ss_pred             EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--C
Confidence            3445789999999999999999999999999999999999999999999988886643 247899999999999643  2


Q ss_pred             CHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..++.....     ...+++++++||+++.|++++|+++.+.+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            223322221     1234579999999999999999999887643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.88  E-value=6.2e-22  Score=141.46  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=90.7

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.+|||||++.+..++..+++++|++++|||++++.+++++..|+..+..... .++|+++|+||+|+..  .+..++
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~  146 (198)
T 1f6b_A           69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEER  146 (198)
T ss_dssp             EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHH
T ss_pred             EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHH
Confidence            6899999999999999999999999999999999999999999999988876532 4799999999999964  556777


Q ss_pred             HHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           87 GHSLAEK-----------------EGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        87 ~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +.+++..                 .+.+++++||++|.|++++|+++.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            7766542                 23579999999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.87  E-value=4.7e-22  Score=144.05  Aligned_cols=118  Identities=31%  Similarity=0.556  Sum_probs=103.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... ++|+++|+||+|+.+...
T Consensus        58 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~  136 (221)
T 3gj0_A           58 HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV  136 (221)
T ss_dssp             EETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS
T ss_pred             EECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc
Confidence            3577889999999999999999999999999999999999999999999999999988765 789999999999965433


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                       . .+...+++..+++++++||+++.|++++|++|.+.+..
T Consensus       137 -~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~  175 (221)
T 3gj0_A          137 -K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  175 (221)
T ss_dssp             -C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred             -c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             2 24556777889999999999999999999999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.87  E-value=1.2e-21  Score=139.08  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=93.6

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.+|||+|++.+..++..+++++|++|+|||++++.+++++..|+..+..... .+.|+++|+||+|+..  .+..++
T Consensus        67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~  144 (190)
T 1m2o_B           67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAE  144 (190)
T ss_dssp             EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHH
Confidence            6889999999999999999999999999999999999999999999988876432 4799999999999964  455666


Q ss_pred             HHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           87 GHSLAEK------------EGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        87 ~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +.+....            .+++++++||++|.|++++|+++.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          145 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            6655432            34579999999999999999998753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.86  E-value=1.2e-20  Score=134.68  Aligned_cols=124  Identities=74%  Similarity=1.142  Sum_probs=110.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .++|..+.+.+||++|++.+..++..++++++++++|||+++..+++.+..|+..+......+.|+++++||+|+...+.
T Consensus        48 ~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~  127 (199)
T 2f9l_A           48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA  127 (199)
T ss_dssp             EETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence            46788899999999999999888899999999999999999999998888888877665444689999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +..+++..++...++.++++||+++.|++++|+.+.+.+.....
T Consensus       128 ~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~  171 (199)
T 2f9l_A          128 VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS  171 (199)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            78888888999999999999999999999999999998876543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.86  E-value=4.5e-21  Score=146.22  Aligned_cols=120  Identities=29%  Similarity=0.549  Sum_probs=106.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.||||+|++.+...+..+++++|++|+|||++++.+++.+. .|+..+....+ ++|+++|+||+|+... 
T Consensus       197 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~  275 (332)
T 2wkq_A          197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  275 (332)
T ss_dssp             EETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCH
T ss_pred             EECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhccccc
Confidence            45788899999999999999999999999999999999999999999986 78888877655 7999999999998543 


Q ss_pred             -----------ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                                 +.+..+++..+++..++ +++++||++|.|++++|+.+.+.++.
T Consensus       276 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          276 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             chhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence                       56778889999999997 99999999999999999999987753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.86  E-value=1.6e-21  Score=135.17  Aligned_cols=113  Identities=19%  Similarity=0.317  Sum_probs=92.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+|||+|++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+....  ..+
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  127 (171)
T 1upt_A           50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSS  127 (171)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHH
Confidence            46789999999999999999999999999999999999999999888888765532 479999999999996532  222


Q ss_pred             HHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           86 DGHSL-----AEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        86 ~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +....     +...+++++++||+++.|++++|+++.+.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  168 (171)
T ss_dssp             HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence            22222     2233567999999999999999999998774

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.86  E-value=4.8e-22  Score=141.30  Aligned_cols=114  Identities=18%  Similarity=0.319  Sum_probs=86.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+..  ..
T Consensus        71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  148 (192)
T 2b6h_A           71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PV  148 (192)
T ss_dssp             TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CH
Confidence            346899999999999999999999999999999999999999999999888865432 469999999999996432  22


Q ss_pred             HHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           85 EDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        85 ~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +++....     ...+++++++||+++.|++++|++|.+.+.
T Consensus       149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            3322211     122457999999999999999999987663

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.86  E-value=7.8e-22  Score=140.48  Aligned_cols=114  Identities=22%  Similarity=0.294  Sum_probs=94.2

Q ss_pred             CEEEEEEEEeCCChhhHhhhh---hhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc-
Q 031238            5 GKTVKAQIWDTAGQERYRAIT---SAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-   78 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-   78 (163)
                      +..+.+++|||+|+++|....   ..+++++|++|+|||++++  +++..+..|+..+..... +.|+++|+||+|+.. 
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-DMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-TCEEEEEEECGGGSCH
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeccccCch
Confidence            566789999999999987766   8999999999999999997  677777788887754444 799999999999753 


Q ss_pred             ------cccCCHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 ------LRAVTEEDGHSLAE----KEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                            .+.+..+..+.+++    ..+++|+++||++ .|++++|+.+++.+
T Consensus       145 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          145 DHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence                  23455556677777    6678999999999 99999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.85  E-value=7.3e-21  Score=134.56  Aligned_cols=113  Identities=24%  Similarity=0.353  Sum_probs=94.2

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+  ....
T Consensus        67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~  144 (190)
T 2h57_A           67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTS  144 (190)
T ss_dssp             CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCH
Confidence            6789999999999999999999999999999999999999999999888876532   3689999999999964  3345


Q ss_pred             HHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +++.....     ..+++++++||+++.|++++|++|.+.+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          145 VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            55555553     235689999999999999999999887644

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.8e-20  Score=132.24  Aligned_cols=113  Identities=19%  Similarity=0.306  Sum_probs=90.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.+|||+|++++..++..+++++|++|+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+  ....++
T Consensus        60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~  137 (187)
T 1zj6_A           60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAE  137 (187)
T ss_dssp             EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHH
Confidence            6889999999999999999999999999999999999999999999988876532 4699999999999964  233444


Q ss_pred             HHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           87 GHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        87 ~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.....     ..+++++++||++|.|++++|++|++.+..
T Consensus       138 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          138 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             HHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            444432     235689999999999999999999887643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.85  E-value=9.7e-21  Score=133.29  Aligned_cols=114  Identities=20%  Similarity=0.295  Sum_probs=91.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...  .+
T Consensus        59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~  136 (181)
T 1fzq_A           59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--AS  136 (181)
T ss_dssp             TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HH
Confidence            46789999999999999999999999999999999999999999888888765422 4789999999999965332  23


Q ss_pred             HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+..     ...+++++++||++|.|++++|+++.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            332221     1224579999999999999999999887643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.85  E-value=1e-20  Score=132.90  Aligned_cols=110  Identities=18%  Similarity=0.286  Sum_probs=90.9

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.+|||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~  142 (181)
T 2h17_A           65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAE  142 (181)
T ss_dssp             EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHH
Confidence            678999999999999999999999999999999999999999999888887653 247999999999999642  33444


Q ss_pred             HHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           87 GHSLAE-----KEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        87 ~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +.....     ..+++++++||+++.|++++|++|.+.
T Consensus       143 i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            443331     234579999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.85  E-value=2.5e-20  Score=131.17  Aligned_cols=114  Identities=22%  Similarity=0.310  Sum_probs=93.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+|||+|++++...+..+++++|++++|||++++.+++++..|+..+..... .+.|+++|+||+|+.+..  ..+
T Consensus        61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  138 (186)
T 1ksh_A           61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCN  138 (186)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHH
Confidence            36789999999999999999999999999999999999999999989888876532 469999999999996532  333


Q ss_pred             HHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           86 DGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        86 ~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..+...     ..+++++++||+++.|++++|+++.+.+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          139 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            3333221     235689999999999999999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.75  E-value=5.8e-23  Score=147.03  Aligned_cols=118  Identities=31%  Similarity=0.596  Sum_probs=100.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++++...+..+++++|++|+|||++++.+++.+. .|+..+....+ ++|+++|+||+|+....
T Consensus        72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~  150 (204)
T 3th5_A           72 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK  150 (204)
Confidence            35677788999999999999999999999999999999999999999886 78877766544 68999999999996532


Q ss_pred             ------------cCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           81 ------------AVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        81 ------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                  .+..+++..+++..++ +++++||++|.|++++|+++++.+
T Consensus       151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence                        4555667778888887 899999999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.84  E-value=9.7e-22  Score=138.87  Aligned_cols=114  Identities=17%  Similarity=0.291  Sum_probs=92.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+|||||++.+...+..+++++|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+....  ..+
T Consensus        65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~  142 (189)
T 2x77_A           65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEA  142 (189)
T ss_dssp             TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHH
Confidence            46789999999999999999999999999999999999999999888888766432 479999999999996432  222


Q ss_pred             HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.....     ...+++++++||+++.|++++|+++.+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          143 EIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence            322221     2234579999999999999999999988743

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=1.8e-21  Score=150.58  Aligned_cols=118  Identities=15%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D   75 (163)
                      .+.+++|||+|++.++..|..+|++++++|+|||+++          ..++.+...|+..+..... .+.|+|+|+||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999998          5679999999999876532 4799999999999


Q ss_pred             Ccccc---------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           76 LNHLR---------------AVTEEDGHSLAE-----------KEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        76 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +...+               .+..+++..++.           ..++.++++||+++.||+++|+++.+.+....
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            85332               366778888776           34668999999999999999999999887644

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.84  E-value=1.1e-20  Score=133.71  Aligned_cols=115  Identities=22%  Similarity=0.383  Sum_probs=91.9

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+...  ...
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~  142 (188)
T 1zd9_A           65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDE  142 (188)
T ss_dssp             TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCH
Confidence            356789999999999999999999999999999999999999999999888866432 47999999999999643  223


Q ss_pred             HHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ++......     ..+++++++||+++.|++++|++|.+.+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            33222211     224578999999999999999999886643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=6e-21  Score=147.59  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=95.9

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKS   74 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~   74 (163)
                      +.+.+++|||+|++.++.+|..+|++++++|+|||++          +..+++++..|+..+..... .+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6789999999999999999999999999999999998          77899999999998876532 479999999999


Q ss_pred             CCccccc--C-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q 031238           75 DLNHLRA--V-------------------TEEDGHSLAEK----------------EGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        75 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      |+...+.  +                   ..+++..++..                ..+.++++||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854322  1                   13556666432                123568999999999999999999


Q ss_pred             HHHHHHHh
Q 031238          118 TEIYHIIS  125 (163)
Q Consensus       118 ~~~~~~~~  125 (163)
                      +.+.....
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.83  E-value=3.1e-21  Score=136.10  Aligned_cols=117  Identities=21%  Similarity=0.398  Sum_probs=93.9

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+.+.+|||+|++.+..++..++++++++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.
T Consensus        53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~  131 (184)
T 2zej_A           53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK  131 (184)
T ss_dssp             ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHH
T ss_pred             CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhH
Confidence            4567899999999999999999999999999999999987 578889999998876644 68999999999986544332


Q ss_pred             ---HHHHHHHHHHcCCc----EEEeccCCCC-CHHHHHHHHHHHHHH
Q 031238           84 ---EEDGHSLAEKEGLS----FLETSALEAT-NVEKAFQTILTEIYH  122 (163)
Q Consensus        84 ---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~l~~~~~~  122 (163)
                         .+.++.+++.++++    ++++||+++. +++++++.+.+.+.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             HHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence               23345566666776    9999999997 899999888876644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=6.6e-20  Score=128.47  Aligned_cols=113  Identities=17%  Similarity=0.309  Sum_probs=89.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~  139 (183)
T 1moz_A           62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASE  139 (183)
T ss_dssp             EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHH
Confidence            678999999999999999999999999999999999999999999998887653 247999999999998642  33444


Q ss_pred             HHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           87 GHSLAEK-----EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        87 ~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .......     .+++++++||+++.|++++|+++.+.+.+
T Consensus       140 i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          140 VSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence            4333321     23479999999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=139.50  Aligned_cols=116  Identities=27%  Similarity=0.362  Sum_probs=90.7

Q ss_pred             ecCEEEEEEEEe-----------------------CCChhhHhhhhhhhhc---------------------CCcEEEEE
Q 031238            3 VEGKTVKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLV   38 (163)
Q Consensus         3 ~~~~~~~l~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~ii~v   38 (163)
                      +++..+.++|||                       ++|+++|..++..+++                     ++|++|+|
T Consensus        90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV  169 (255)
T 3c5h_A           90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG  169 (255)
T ss_dssp             ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred             cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence            467889999999                       6677777777777777                     79999999


Q ss_pred             EECCCh--hHHHHHHHHHHHHHhh-cCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHH
Q 031238           39 YDITKR--QTFDNVLRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        39 ~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                      ||++++  .+++.+..|+..+... ...++|+++|+||+|+...+.+  ++++.++.. .+++++++||+++.|++++|+
T Consensus       170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            999998  8999999999988765 2346999999999999654443  566777765 478999999999999999999


Q ss_pred             HHHHHH
Q 031238          115 TILTEI  120 (163)
Q Consensus       115 ~l~~~~  120 (163)
                      +|.+.+
T Consensus       248 ~l~~~l  253 (255)
T 3c5h_A          248 TLVQLI  253 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=5.8e-20  Score=143.88  Aligned_cols=120  Identities=14%  Similarity=0.175  Sum_probs=97.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D   75 (163)
                      .+.+++|||+|++.++..|..+|++++++|+|||+++          ..+|+++..|+..+.... ..+.|++||+||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3789999999999999999999999999999999999          889999999999988753 25799999999999


Q ss_pred             Cccccc---C---------------------------CHHHHHHHH-----HH--------cCCcEEEeccCCCCCHHHH
Q 031238           76 LNHLRA---V---------------------------TEEDGHSLA-----EK--------EGLSFLETSALEATNVEKA  112 (163)
Q Consensus        76 l~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~  112 (163)
                      +...+.   +                           ..+++..++     +.        .++.++++||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            854322   2                           134455553     22        2456789999999999999


Q ss_pred             HHHHHHHHHHHHhH
Q 031238          113 FQTILTEIYHIISK  126 (163)
Q Consensus       113 ~~~l~~~~~~~~~~  126 (163)
                      |.++.+.+.....+
T Consensus       376 F~~v~~~I~~~~l~  389 (402)
T 1azs_C          376 FNDCRDIIQRMHLR  389 (402)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888766543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.81  E-value=3.6e-21  Score=146.82  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=92.4

Q ss_pred             EEEEEEEeCCChhhHhh---hhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc--
Q 031238            7 TVKAQIWDTAGQERYRA---ITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL--   79 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~---~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~--   79 (163)
                      .+++++|||+|+++|..   .+..+|++++++|+|||++++  +++..+..|+..+....+ ++|++++|||+|+...  
T Consensus        45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~  123 (331)
T 3r7w_B           45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDF  123 (331)
T ss_dssp             SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHH
T ss_pred             EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhh
Confidence            36899999999999964   468899999999999999987  344444555555554444 7999999999999643  


Q ss_pred             -----ccCCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           80 -----RAVTEEDGHSLAEK----EGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        80 -----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                           +++..++++++++.    +++.|+++||++ .++.++|..+++.+......
T Consensus       124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence                 35666677777775    578999999987 69999999999877665443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.81  E-value=2.1e-20  Score=145.03  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=92.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D   75 (163)
                      .+.+++|||+|++.++..|..++++++++|||||+++          ..++.+...|+..+.... ..+.|+|+|+||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          678999999999987653 24799999999999


Q ss_pred             Ccccc----------------cCCHHHHHHHHH-----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           76 LNHLR----------------AVTEEDGHSLAE-----------KEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        76 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +...+                .++.+++..++.           ..++.++++||+++.|++++|+++.+.+.....
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            85432                266777777652           345788999999999999999999998876543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.81  E-value=2e-20  Score=143.01  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKS   74 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~   74 (163)
                      +.+.+++|||+|++.++..|..+|++++++|+|||++          +..++.+...|+..+..... .+.|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            4478999999999999999999999999999999664          66788888889988876533 579999999999


Q ss_pred             CCcccc----------------cCCHHHHHHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           75 DLNHLR----------------AVTEEDGHSLAE----------KEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        75 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      |+.+.+                ++..+++..++.          ..++.++++||+++.||+.+|+.+.+.+++..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            986543                467778877743          34567899999999999999999999887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.81  E-value=8.8e-19  Score=124.35  Aligned_cols=119  Identities=77%  Similarity=1.159  Sum_probs=105.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+++||++|.+++...+..+++.++++++|||+++..+++.+..|+..+........|+++++||.|+.+.+.
T Consensus        72 ~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~  151 (191)
T 1oix_A           72 QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA  151 (191)
T ss_dssp             EETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred             EECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc
Confidence            46788889999999999998888899999999999999999999998888888877665444689999999999987677


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..+++..++...++.++++||+++.|++++|+.+.+.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            778888999999999999999999999999999998765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.7e-20  Score=144.03  Aligned_cols=117  Identities=17%  Similarity=0.315  Sum_probs=88.3

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      +...+.+.||||+|++.+..++..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+..  
T Consensus       205 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--  282 (329)
T 3o47_A          205 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--  282 (329)
T ss_dssp             EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--
T ss_pred             ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--
Confidence            33456899999999999999999999999999999999999999999888877765433 479999999999996533  


Q ss_pred             CHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAE-----KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+++.....     ..+++++++||++|.|++++|++|++.+.+
T Consensus       283 ~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          283 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            2233322221     123469999999999999999999987743

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.80  E-value=2.1e-18  Score=125.47  Aligned_cols=119  Identities=19%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             EEEEEEeCCCh------hh----HhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQ------ER----YRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~------~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      +.+.||||||+      +.    +.. +..++..+|++|+|||++++.++.  ....|+..+..... ++|+++|+||+|
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~-~~piilv~nK~D  153 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS-NKSIVIGFNKID  153 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc-CCcEEEEEeCcc
Confidence            57899999998      33    222 234578899999999999987754  33466666654422 689999999999


Q ss_pred             CcccccCCHH---HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhH
Q 031238           76 LNHLRAVTEE---DGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIYHIISKKA  128 (163)
Q Consensus        76 l~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~  128 (163)
                      +...+.+..+   ....++...+  ++++++||++|.|++++|++|.+.+.+......
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~  211 (228)
T 2qu8_A          154 KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAESI  211 (228)
T ss_dssp             GCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9776666654   4556666666  789999999999999999999999887665443

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.79  E-value=8.3e-20  Score=131.36  Aligned_cols=113  Identities=17%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             EEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhh---cCCCCeEEEEeeCCCCccccc
Q 031238            7 TVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDH---ADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+.+.+|||||++.+.. ++..+++++|++|+|||+++.. ++.....|+..+...   ...++|+++|+||+|+.....
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  132 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  132 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence            57899999999999987 8888999999999999999854 466665544443322   224689999999999965432


Q ss_pred             CC--HHHHHHHHH---------------------------------Hc--CCcEEEeccCCC------CCHHHHHHHHHH
Q 031238           82 VT--EEDGHSLAE---------------------------------KE--GLSFLETSALEA------TNVEKAFQTILT  118 (163)
Q Consensus        82 ~~--~~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~~~~~l~~  118 (163)
                      ..  .+.......                                 ..  +++|+++||++|      .|++++|++|.+
T Consensus       133 ~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~  212 (214)
T 2fh5_B          133 AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  212 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence            11  011111111                                 11  557999999999      999999999986


Q ss_pred             H
Q 031238          119 E  119 (163)
Q Consensus       119 ~  119 (163)
                      .
T Consensus       213 ~  213 (214)
T 2fh5_B          213 I  213 (214)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=2.9e-19  Score=135.93  Aligned_cols=115  Identities=17%  Similarity=0.300  Sum_probs=94.3

Q ss_pred             EEEEEEEeCCChhhH-----hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcc-
Q 031238            7 TVKAQIWDTAGQERY-----RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNH-   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~-   78 (163)
                      .+.+.+|||||++.+     ..++..+++++|++|+|||++++.+++++..|...+....  ..++|+++|+||+|+.. 
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            568999999999988     6788899999999999999999999998877655444332  23699999999999865 


Q ss_pred             -ccc----CCHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 -LRA----VTEEDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 -~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                       .+.    +..++++.+++.+|   ++++++||++ .++.++|..++..+..
T Consensus       131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence             343    45577788888887   6899999999 8999999998876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.78  E-value=3.3e-19  Score=136.88  Aligned_cols=122  Identities=15%  Similarity=0.164  Sum_probs=98.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT----------KRQTFDNVLRWLRELRDHAD-SNIVIMMAGN   72 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~n   72 (163)
                      +.+.+.+++|||+|++.++..|..+|++++++|+|||++          +..++.+...|+..+..... .+.|+++++|
T Consensus       157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred             EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence            334578999999999999999999999999999999998          67889999999998876543 5799999999


Q ss_pred             CCCCcccc---------------cCCHHHHHHHHH-Hc--------------------------CCcEEEeccCCCCCHH
Q 031238           73 KSDLNHLR---------------AVTEEDGHSLAE-KE--------------------------GLSFLETSALEATNVE  110 (163)
Q Consensus        73 K~Dl~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~i~  110 (163)
                      |+|+...+               ....+++..++. ++                          ++.++++||+++.|++
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            99985321               123455544432 22                          3678999999999999


Q ss_pred             HHHHHHHHHHHHHHhH
Q 031238          111 KAFQTILTEIYHIISK  126 (163)
Q Consensus       111 ~~~~~l~~~~~~~~~~  126 (163)
                      .+|+.+.+.++. ..+
T Consensus       317 ~vF~~v~~~Il~-~l~  331 (340)
T 4fid_A          317 RVFMLAVDVIMK-NMA  331 (340)
T ss_dssp             HHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHH-HHH
Confidence            999999999987 443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.76  E-value=2.3e-18  Score=119.29  Aligned_cols=106  Identities=20%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             EEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|+..+.      .+...+++  ++|++++|+|+++.+.   ...|+..+...   ++|+++|+||+|+...
T Consensus        50 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  123 (165)
T 2wji_A           50 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS  123 (165)
T ss_dssp             EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH
T ss_pred             cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc
Confidence            578999999988764      34456665  8999999999998543   34566666542   6899999999998655


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+.. +++.+++.++++++++||++|.|++++|+++.+.+
T Consensus       124 ~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          124 LGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             TTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             cChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            54443 35677888889999999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.73  E-value=1.2e-17  Score=117.43  Aligned_cols=111  Identities=23%  Similarity=0.243  Sum_probs=86.8

Q ss_pred             EEEEEeCCC-----------hhhHhhhhhhhhcC-CcEEEEEEECCChhHHHHH-HHHHHH--------HHh-hcCCCCe
Q 031238            9 KAQIWDTAG-----------QERYRAITSAYYRG-AVGALLVYDITKRQTFDNV-LRWLRE--------LRD-HADSNIV   66 (163)
Q Consensus         9 ~l~l~Dt~G-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------i~~-~~~~~~p   66 (163)
                      .+.+|||||           ++.+...+..++++ +++++++|++.+..++..+ ..|...        +.. ....++|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            478999999           77888888888887 8888888888887788776 455542        222 1224689


Q ss_pred             EEEEeeCCCCcccccCCHHHHHHHHHHcCCc-------EEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           67 IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS-------FLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        67 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +++|+||+|+...+   .+..+.+++.++++       ++++||++|.|++++|+++.+.+..
T Consensus       125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            99999999986543   56677788888764       7999999999999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.72  E-value=8.8e-18  Score=127.41  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      .+++||+  +++++.+++.+++++|++|+|||++++. +++.+..|+..+..   .++|+++|+||+|+.+.+.+  +++
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~  136 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV  136 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence            5789999  8899999999999999999999999987 68888899887654   26899999999999654432  446


Q ss_pred             HHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238           88 HSLAEKEG--LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        88 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +.+++.++  ++++++||+++.|++++|..+..
T Consensus       137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            66777666  89999999999999999987753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.72  E-value=5.6e-18  Score=137.48  Aligned_cols=114  Identities=19%  Similarity=0.235  Sum_probs=94.7

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +..+.+.+|||+|++.+..+...+++++|++|+|||+++.   +....|+..+....+ +.|+++|+||+|+...+.+..
T Consensus        95 ~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~  170 (535)
T 3dpu_A           95 LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQ  170 (535)
T ss_dssp             TTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCH
T ss_pred             CceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCH
Confidence            3457899999999999999999999999999999999875   445678888877755 689999999999987778888


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.++.++...+++++++||++|.|++++|+.+.+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          171 KKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             HHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            88888888889999999999999999999999887754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.71  E-value=2.1e-17  Score=113.16  Aligned_cols=103  Identities=17%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             EEEEEeCCChhh-------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            9 KAQIWDTAGQER-------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         9 ~l~l~Dt~G~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+.+|||+|+..       +...+..+++.+|++|+|||++++.+...  .|+......  .+.|+++|+||+|+.+.. 
T Consensus        50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~-  124 (161)
T 2dyk_A           50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE-  124 (161)
T ss_dssp             EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG-
T ss_pred             eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch-
Confidence            688999999876       45566678999999999999998543321  222222222  258999999999996542 


Q ss_pred             CCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                         +++.+++ ..++ +++++||+++.|++++|+++.+.+
T Consensus       125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence               2333444 5677 899999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.70  E-value=6.7e-17  Score=114.21  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             EEEEEeCCC----------hhhHhhhhhhhhcCC---cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            9 KAQIWDTAG----------QERYRAITSAYYRGA---VGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         9 ~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .+.+|||||          ++.+..++..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~D  145 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKAD  145 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGG
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcc
Confidence            478999999          788888888888877   9999999999876665532 2222222   3689999999999


Q ss_pred             CcccccCCH--HHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           76 LNHLRAVTE--EDGHS-LAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        76 l~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +...+.+..  +++.+ +....+.+++++||+++.|++++|+++.+.+
T Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          146 KIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             GSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            976444322  22222 2222356899999999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.70  E-value=8.2e-17  Score=112.01  Aligned_cols=105  Identities=20%  Similarity=0.191  Sum_probs=78.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+|||+|++.+..++..++..+|++|+|||++++   .+++.+    ..+.   ..++|+++|+||+|+...   ..
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~  124 (178)
T 2lkc_A           55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NP  124 (178)
T ss_dssp             EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CH
T ss_pred             ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CH
Confidence            3577999999999999888999999999999999884   333322    2222   236899999999999642   23


Q ss_pred             HHHHHHHHHc-------C--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKE-------G--LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        85 ~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.........       +  ++++++||+++.|++++|++|.+.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          125 DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence            3333332222       1  479999999999999999999887654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.69  E-value=1.8e-16  Score=120.48  Aligned_cols=111  Identities=18%  Similarity=0.106  Sum_probs=90.9

Q ss_pred             EEEEEEEeCCChhh----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      ..++.||||||...          +......+++.+|++++|+|++++.++.+...|+..+...   +.|+++|+||+|+
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl  134 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDK  134 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGG
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccC
Confidence            56799999999843          3456677899999999999999987877777777776653   5899999999998


Q ss_pred             cccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ........+....+.+..+  .+++++||++|.|++++|+.+.+.+
T Consensus       135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence            7445555677777877775  6899999999999999999998776

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.69  E-value=7.2e-18  Score=117.75  Aligned_cols=105  Identities=20%  Similarity=0.186  Sum_probs=77.2

Q ss_pred             EEEEEeCCChhhHh----h--h--hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            9 KAQIWDTAGQERYR----A--I--TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~----~--~--~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+|||+|++++.    .  +  ...+++++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+..
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~  131 (172)
T 2gj8_A           53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGET  131 (172)
T ss_dssp             EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcch
Confidence            47899999985421    1  1  124589999999999999987765 3467777766544569999999999985321


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .       .+++..+.+++++||+++.|++++|+++.+.+.
T Consensus       132 ~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          132 L-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             C-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             h-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            1       112224568999999999999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=2.4e-17  Score=115.93  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             EEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|+..+.      .++..++.  .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+...
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  127 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS  127 (188)
T ss_dssp             EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH
T ss_pred             cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc
Confidence            578999999987763      44566664  5999999999886   4555667766654   36899999999998655


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.+. ...+.+++..+++++++||+++.|++++|+++.+.+..
T Consensus       128 ~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          128 LGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             TTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             ccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5444 35667788889999999999999999999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.67  E-value=9.6e-17  Score=119.24  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=84.4

Q ss_pred             EEEEEEEeCCChhhHhh------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ...+.||||||...+..      +.+.++  .++|++|+|+|+++.++.   ..|...+...   ++|+++|+||+|+..
T Consensus        51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAK  124 (258)
T ss_dssp             TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHH
T ss_pred             CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCC
Confidence            35789999999876643      335555  589999999999986543   3455555443   689999999999866


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+.+.. ....+++.++++++++||++|.|++++|+++.+.+.
T Consensus       125 ~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          125 KTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             HTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            555543 367788888999999999999999999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.66  E-value=5.5e-16  Score=109.20  Aligned_cols=107  Identities=17%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             EEEEEeCCC----------hhhHhhhhhhhhcCC---cEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            9 KAQIWDTAG----------QERYRAITSAYYRGA---VGALLVYDITKRQT--FDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G----------~~~~~~~~~~~~~~~---d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.+|||+|          ++.+..++..+++.+   |++++|+|+++..+  ...+..|+...      +.|+++|+||
T Consensus        69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK  142 (195)
T 3pqc_A           69 KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTK  142 (195)
T ss_dssp             TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEEC
T ss_pred             cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence            468999999          777888888888876   99999999987533  33334444332      5899999999


Q ss_pred             CCCccccc--CCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           74 SDLNHLRA--VTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        74 ~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +|+.....  ...+++..++... +++++++||+++.|++++|+++.+.+.
T Consensus       143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            99864322  2334555565553 368999999999999999999988764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.65  E-value=8.8e-17  Score=120.31  Aligned_cols=107  Identities=21%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             EEEEEEEeCCChhhHh------hhhhhhhc--CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYR------AITSAYYR--GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+.+|||||...+.      .+.+.++.  ++|++|+|||+++.++.   ..|...+..   .++|+++++||+|+..
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHH
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCC
Confidence            4568999999987764      45566665  69999999999986543   345555544   2689999999999865


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+.+. .....+++.++++++++||++|.|++++|+++.+.+
T Consensus       122 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          122 GQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             cCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            55444 345678888899999999999999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.65  E-value=6.4e-16  Score=123.23  Aligned_cols=111  Identities=17%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             EEEEEeCCC----------hhhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAG----------QERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G----------~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.||||||          ++.|..++. .+++.+|++|+|+|++++.+. ....|...+..   .++|+++|+||+|+.
T Consensus       244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAV  319 (456)
T ss_dssp             EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGS
T ss_pred             eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcC
Confidence            689999999          677776655 478999999999999885332 22344444443   368999999999998


Q ss_pred             ccccCCHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKE-----GLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+....+++.+.++..     +++++++||++|.|++++|+.+.+.+...
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            76666667766666554     46899999999999999999999877554

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.65  E-value=1.4e-15  Score=124.59  Aligned_cols=112  Identities=20%  Similarity=0.271  Sum_probs=89.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+....  .
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~  140 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--P  140 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--H
Confidence            4567899999999999999989999999999999999998776666666654432    268999999999996532  2


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+...++.+.+++   .++++||++|.|++++|+++.+.+.
T Consensus       141 ~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          141 ERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            3344556666676   4999999999999999999887653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.63  E-value=2.3e-15  Score=123.25  Aligned_cols=112  Identities=25%  Similarity=0.341  Sum_probs=89.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......|.....    .++|+++|+||+|+....  .
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~  142 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V  142 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence            4557899999999999999888889999999999999999877766666655432    368999999999996432  2


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGL---SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+...++.+..++   +++++||++|.|++++|+++++.+.
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            3334556666666   4899999999999999999887663

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.63  E-value=2e-16  Score=117.43  Aligned_cols=104  Identities=18%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             EEEEEeCCChhhHhh----------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYRA----------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.||||||...+..          +.+.++  .++|++|+|+|+++.++...+..   .+..   .+.|+++|+||+|+
T Consensus        49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl  122 (256)
T 3iby_A           49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDI  122 (256)
T ss_dssp             EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHH
T ss_pred             EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhc
Confidence            689999999876543          556677  89999999999998655544333   3332   26899999999998


Q ss_pred             cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ...+.+.. ....+.+..+++++++||++|.|++++|+++.+.
T Consensus       123 ~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          123 AEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            65443322 2445777789999999999999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.62  E-value=1.8e-16  Score=114.12  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECC-ChhHHHHHHHHHHHHHhh----cCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDIT-KRQTFDNVLRWLRELRDH----ADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~   78 (163)
                      +.+.+|||||++.+...+..+++.    +|++|+|||++ ++.++..+..|+..+...    ...++|+++|+||+|+..
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            367899999999998888888887    89999999999 888898888888887664    234799999999999976


Q ss_pred             cccCC------HHHHHHHHHHcCCcEEEeccCCCCC
Q 031238           79 LRAVT------EEDGHSLAEKEGLSFLETSALEATN  108 (163)
Q Consensus        79 ~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~  108 (163)
                      .+.+.      .+++..++...+.+++++||+++.+
T Consensus       135 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          135 ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            55433      3445666666677899999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.62  E-value=1.9e-15  Score=108.99  Aligned_cols=112  Identities=18%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             EEEEEEeCCC----------hhhHhhhhhhhhcC---CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            8 VKAQIWDTAG----------QERYRAITSAYYRG---AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G----------~~~~~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      ..+.||||||          ++.+..+...+++.   +|++++|+|++++.+. ....|+..+..   .++|+++|+||+
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~  154 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKC  154 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECG
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEecc
Confidence            5688999999          45666677777776   7889999999875332 12344444443   258999999999


Q ss_pred             CCcccccCC--HHHHHHHHHH-------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVT--EEDGHSLAEK-------EGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        75 Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      |+.......  .+........       .+.+++++||+++.|++++|++|.+.+...
T Consensus       155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            986533321  1222222222       356899999999999999999999877543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.61  E-value=6.7e-15  Score=113.94  Aligned_cols=113  Identities=16%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             EEEEEEeCCChhhHh---------hhhhhhhcCCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYR---------AITSAYYRGAVGALLVYDITKRQ--TFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      ..+.+|||+|.....         .....+...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl  292 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV  292 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence            458999999984421         12223455799999999998876  67777888888877654 6899999999998


Q ss_pred             cccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .....+  ++...++...+++++++||++|+|++++|+++.+.+...
T Consensus       293 ~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          293 ADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             CCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            654332  445566667788999999999999999999999888554

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.61  E-value=3.7e-15  Score=117.09  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TE   84 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~   84 (163)
                      ...+.||||||+++|.......++.+|++|+|+|++++.++.+...|+..+....  ..|+++++||+|+.+....  ..
T Consensus        74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHH
Confidence            3789999999999999888889999999999999998776667777766555442  3589999999998643221  11


Q ss_pred             HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           85 EDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        85 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +++.++....   +++++++||++|.|++++|+.|.+.+
T Consensus       152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            2233333222   46899999999999999999888755

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=2e-15  Score=119.74  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             EEEEEeCCCh----------hhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQ----------ERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~----------~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.||||||+          +.|..++. .+++.+|++++|+|++++.++++. .|+..+..   .++|+++|+||+|+.
T Consensus       224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~  299 (436)
T 2hjg_A          224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAV  299 (436)
T ss_dssp             EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGS
T ss_pred             EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCC
Confidence            4889999998          55555444 478899999999999998777664 46665543   368999999999997


Q ss_pred             ccccCCHHHHH-HHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGH-SLAEK----EGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.+....++.. .+.+.    .+++++++||++|.|++++|+.+.+.+...
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            65554433332 22222    256899999999999999999999877653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.60  E-value=1.9e-15  Score=120.99  Aligned_cols=109  Identities=17%  Similarity=0.086  Sum_probs=70.8

Q ss_pred             EEEEEEeCCChhhHhhhh--------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRAIT--------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.+.||||+|++.+...+        ..+++.+|++++|||++++.+++.+..+...+... . ++|+++|+||+|+...
T Consensus       281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAAN  358 (476)
T ss_dssp             EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTT
T ss_pred             eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCc
Confidence            468999999997765433        34688999999999999987765332222222222 2 5899999999999654


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ...   ..+.+.+....+++++||++|.|++++|+++.+.+.
T Consensus       359 ~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          359 ADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             THH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             cch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            432   123344332368999999999999999999998775

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.59  E-value=2.8e-15  Score=115.46  Aligned_cols=109  Identities=16%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             EEEEEEeCCChhh----Hhhhhhhhh---cCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQER----YRAITSAYY---RGAVGALLVYDITK---RQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~~~----~~~~~~~~~---~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D   75 (163)
                      ..+.||||||...    +..+...++   .++|++|+|+|+++   ..+++++..|+.++..+..  .++|+++|+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            4689999999754    223444444   45999999999998   7788888899999887653  4799999999999


Q ss_pred             CcccccCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +...+    +..+.+.+..+  .+++++||+++.|++++|++|.+.+
T Consensus       286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  328 (342)
T ss_dssp             STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence            86422    34555666665  6899999999999999999998876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.58  E-value=5.7e-16  Score=115.94  Aligned_cols=106  Identities=15%  Similarity=0.097  Sum_probs=78.4

Q ss_pred             EEEEEEeCCChhhHh----------hhhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQERYR----------AITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~----------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      ..+.||||||...+.          ...+.++  .++|++|+|+|+++.+....+   ...+...   ++|+++|+||+|
T Consensus        50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~D  123 (274)
T 3i8s_A           50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLD  123 (274)
T ss_dssp             CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHH
T ss_pred             CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECcc
Confidence            467899999987654          2233343  799999999999986554443   3333333   589999999999


Q ss_pred             CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+.+.+. .....+.+..+++++++||++|.|++++|+++.+.+
T Consensus       124 l~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          124 IAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             chhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            86544332 124567777899999999999999999999987654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=2.1e-14  Score=113.01  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=74.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-   81 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-   81 (163)
                      ...+.||||||++.|.......+..+|++|+|+|++++    ++++.+..|    ... . ..|+++++||+|+.+... 
T Consensus        80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~-~~~iivv~NK~Dl~~~~~~  153 (408)
T 1s0u_A           80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-G-IDKIIIVQNKIDLVDEKQA  153 (408)
T ss_dssp             EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-T-CCCEEEEEECTTSSCTTTT
T ss_pred             ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-C-CCeEEEEEEccCCCCHHHH
Confidence            37899999999999987777777889999999999953    444433322    212 2 358999999999965433 


Q ss_pred             -CCHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 -VTEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 -~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ...+++.++++..   +++++++||++|.|+++++++|.+.+
T Consensus       154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence             2345566666542   56899999999999999999887654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.57  E-value=1.6e-15  Score=119.76  Aligned_cols=104  Identities=18%  Similarity=0.130  Sum_probs=82.0

Q ss_pred             EEEEEeCCChhhHhhh-------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            9 KAQIWDTAGQERYRAI-------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~-------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+.||||||++++..+       ...++.++|++|+|||++....   ...|+..+...   ++|+++|+||+|+...+.
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH
Confidence            6899999999876544       3457899999999999943322   34555555544   689999999999976554


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .  +..+.+++.++++++++||++|.|++++|++|.+.+
T Consensus       158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3  556666677788999999999999999999998877

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.57  E-value=2.7e-15  Score=111.97  Aligned_cols=107  Identities=20%  Similarity=0.109  Sum_probs=81.9

Q ss_pred             EEEEEeCCChhhHhh------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            9 KAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+|||||...+..      ..+.++  .++|++++|+|+++.+   ....|+..+....  ..|+++|+||+|+...+
T Consensus        51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~  125 (271)
T 3k53_A           51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKK  125 (271)
T ss_dssp             EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHH
T ss_pred             eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCccc
Confidence            589999999877654      556666  6899999999999853   3334455544432  28999999999986544


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+... ...+.+..+++++++||++|.|++++|+.+.+.+.
T Consensus       126 ~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          126 GAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             TCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             ccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            43332 56677888999999999999999999999988753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.57  E-value=4.8e-15  Score=112.43  Aligned_cols=111  Identities=15%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             cCEEEEEEEEe-CCC-----hhhHhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            4 EGKTVKAQIWD-TAG-----QERYRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         4 ~~~~~~l~l~D-t~G-----~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      -|+.+.++.|| +.|     ++++..+.+.+++++|++++|||++++. ++..+..|+..+..   .++|+++|+||+|+
T Consensus        46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL  122 (302)
T 2yv5_A           46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDL  122 (302)
T ss_dssp             BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGG
T ss_pred             CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccC
Confidence            45677888887 433     6778888889999999999999999886 88888888886654   36899999999998


Q ss_pred             cccccCC-HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Q 031238           77 NHLRAVT-EEDGHSLAEKEGLSFLETSALEATNVEKAFQTIL  117 (163)
Q Consensus        77 ~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  117 (163)
                      .+...+. .++...+.+..+++++++||+++.|++++++.+.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          123 LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            6533222 3445556667789999999999999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.56  E-value=3.4e-15  Score=113.16  Aligned_cols=107  Identities=18%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             EEEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH-HHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL-RELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..++.||||||...        +......+++++|++++|||++++.+..  ..|+ ..+.... .+.|+++|+||+|+.
T Consensus        54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAA  130 (301)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred             CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence            46889999999765        4556677899999999999999864433  3344 3444332 368999999999986


Q ss_pred             ccccCCHHHHHHHHHH-cC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEK-EG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ....   . .....+. .+ .+++++||+++.|++++|+.+.+.+
T Consensus       131 ~~~~---~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          131 KYPE---E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SSHH---H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CchH---H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            4322   0 2222232 23 3789999999999999999987654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.53  E-value=4.5e-14  Score=111.15  Aligned_cols=108  Identities=21%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc-
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA-   81 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-   81 (163)
                      ...+.||||||+++|.......+..+|++|+|+|++++    ++.+.+..|    ... . ..|+++++||+|+.+... 
T Consensus        82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~-~~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-G-QKNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-T-CCCEEEEEECGGGSCHHHH
T ss_pred             ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-C-CCcEEEEEECccCCCHHHH
Confidence            37899999999999887777778889999999999954    344433322    222 1 358999999999865321 


Q ss_pred             -CCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 -VTEEDGHSLAEK---EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ...+++..+.+.   .+++++++||+++.|+++++++|.+.+
T Consensus       156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence             123344555543   356899999999999999999887654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.53  E-value=6.3e-14  Score=112.30  Aligned_cols=106  Identities=23%  Similarity=0.184  Sum_probs=78.9

Q ss_pred             EEEEEEeCCChh-hHh--------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQE-RYR--------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~-~~~--------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+.||||+|.+ .+.        .....+++.+|++|+|||++++.++++.. ++..+     .++|+++|+||+|+..
T Consensus       291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~  364 (482)
T 1xzp_A          291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVE  364 (482)
T ss_dssp             EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCC
T ss_pred             eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECccccc
Confidence            458999999987 543        12346789999999999999887765532 22322     2689999999999964


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .  +..+++..+.. .+.+++++||+++.|++++|++|.+.+..
T Consensus       365 ~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          365 K--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             C--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             c--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            2  34455544432 34689999999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.52  E-value=8.7e-14  Score=110.41  Aligned_cols=104  Identities=22%  Similarity=0.260  Sum_probs=75.7

Q ss_pred             EEEEEeCCChhh---------HhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQER---------YRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.+|||||.+.         +...+..+++++|++|+|+|++++.+..  .+..|+..      .++|+++|+||+|+.
T Consensus        50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~  123 (439)
T 1mky_A           50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENL  123 (439)
T ss_dssp             EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSH
T ss_pred             EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCc
Confidence            478999999753         3455677899999999999998764432  23344332      158999999999985


Q ss_pred             ccccCCHHHH-HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDG-HSLAEKEGL-SFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        78 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +.  . .... .++. ..++ +++++||++|.|++++|+.+.+.+..
T Consensus       124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            32  1 1222 3333 4566 79999999999999999999887753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.51  E-value=1e-13  Score=111.29  Aligned_cols=107  Identities=23%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--C
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--V   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~   82 (163)
                      ..+.||||||+++|.......++.+|++|+|+|+++   +++.+.+.    .+..   .++|+++++||+|+.+...  .
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~  145 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKR  145 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHH
Confidence            578999999999998888888999999999999987   44443332    2222   2578899999999964221  1


Q ss_pred             CHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKE----GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        83 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ..+++..+....    +.+++++||++|.|+++++++|.+.+.
T Consensus       146 ~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          146 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            133445555554    468999999999999999999888764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.51  E-value=4.7e-14  Score=113.20  Aligned_cols=107  Identities=15%  Similarity=0.062  Sum_probs=71.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHH------HHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDN------VLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.....+.||||||+++|......+++.+|++|+|+|++++.++..      ....+...... + ..|+|+|+||+|+.
T Consensus       107 ~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~  184 (483)
T 3p26_A          107 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNV  184 (483)
T ss_dssp             ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcc
Confidence            3445689999999999999988999999999999999998754322      22222222211 1 35799999999986


Q ss_pred             ccccCCHHHH----HHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238           78 HLRAVTEEDG----HSLAEKEG-----LSFLETSALEATNVEKA  112 (163)
Q Consensus        78 ~~~~~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~~i~~~  112 (163)
                      +.+....+++    ..+....+     ++++++||++|.|++++
T Consensus       185 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          185 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            5332222332    33333333     47899999999999864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.51  E-value=6.8e-14  Score=113.27  Aligned_cols=69  Identities=23%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|++++.+......| ..+..   .++|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            346789999999999998889999999999999999987666554444 33332   3689999999999853

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.49  E-value=3.3e-13  Score=110.60  Aligned_cols=107  Identities=22%  Similarity=0.202  Sum_probs=77.7

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC---
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV---   82 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~---   82 (163)
                      .+.||||||++.|..++...++.+|++|+|||+++   +++++.+..    +..   .++|+++++||+|+......   
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence            58999999999999988888999999999999998   566654432    221   36899999999998542211   


Q ss_pred             ----------CHH----------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 ----------TEE----------DGHSLAEKEG---------------LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ----------~~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                                ...          +........+               .+++++||++|.|++++++++...+..
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence                      010          0111111112               278999999999999999999887643

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.48  E-value=2.4e-14  Score=112.53  Aligned_cols=101  Identities=19%  Similarity=0.126  Sum_probs=73.8

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~   82 (163)
                      +.....+.||||||+++|.......++.+|++|+|+|++++.. .....|+..+...   ++| +++++||+|+.+....
T Consensus        71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~  146 (405)
T 2c78_A           71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPEL  146 (405)
T ss_dssp             ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHH
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHH
Confidence            3344678999999999998888888999999999999988643 2344555544433   577 8999999998642211


Q ss_pred             ---CHHHHHHHHHHcC-----CcEEEeccCCCCC
Q 031238           83 ---TEEDGHSLAEKEG-----LSFLETSALEATN  108 (163)
Q Consensus        83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  108 (163)
                         ..+++..+.+..+     .+++++||++|.|
T Consensus       147 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          147 LDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence               1234555666655     5799999999987

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.48  E-value=4e-14  Score=112.25  Aligned_cols=107  Identities=24%  Similarity=0.164  Sum_probs=76.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc--C-
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA--V-   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~--~-   82 (163)
                      ....+.||||||+++|...+..+++.+|++|+|+|++++.. .....++..+... + ..|+++|+||+|+.+...  + 
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHHHH
Confidence            34578999999999998888888999999999999998642 2233344333322 1 246999999999964211  1 


Q ss_pred             -CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHH
Q 031238           83 -TEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQT  115 (163)
Q Consensus        83 -~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~  115 (163)
                       ..++...+++..+     ++++++||++|.|++++|+.
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence             1344556666666     57999999999999986543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.48  E-value=7.5e-14  Score=110.84  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HH---HHHHHHHHHHhhcCCCCe-EEEEeeCCCCc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVLRWLRELRDHADSNIV-IMMAGNKSDLN   77 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~   77 (163)
                      .....+.||||||+++|.......++.+|++|+|+|++++..   |+   +....+..+..   .++| +|+++||+|+.
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDP  168 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCc
Confidence            344588999999999998888888999999999999997532   11   22222222221   2466 99999999984


Q ss_pred             ccc------cCCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q 031238           78 HLR------AVTEEDGHSLAEKEG------LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        78 ~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  114 (163)
                      ...      ....++...+.+..+      ++++++||++|.|++++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            311      111233444555544      3699999999999999766

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.48  E-value=9e-15  Score=116.00  Aligned_cols=110  Identities=19%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----CCC-CeEEEEeeCCCCcc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA----DSN-IVIMMAGNKSDLNH   78 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~-~piivv~nK~Dl~~   78 (163)
                      +.....+.||||||+++|......+++.+|++|+|+|+++ .+|+....|..+.....    ..+ .|+++++||+|+.+
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence            3445679999999999998888889999999999999998 66764433222222211    113 46899999999864


Q ss_pred             cc------cCCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q 031238           79 LR------AVTEEDGHSLAEKEG-----LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        79 ~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  114 (163)
                      ..      ....+++..+++..+     ++++++||++|.|+.++++
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            21      112345566666665     5799999999999986654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.47  E-value=9.4e-14  Score=108.02  Aligned_cols=112  Identities=10%  Similarity=-0.029  Sum_probs=81.3

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEee-CCCCcccccCC
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGN-KSDLNHLRAVT   83 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~n-K~Dl~~~~~~~   83 (163)
                      ....+.||||||+++|.......++.+|++|+|+| +.. .+.+...++..+...   ++|. ++++| |+|+ +...+.
T Consensus        58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~  131 (370)
T 2elf_A           58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAID  131 (370)
T ss_dssp             SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHH
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHH
Confidence            34568999999999987777777899999999999 543 344455555544433   4666 88999 9998 432221


Q ss_pred             --HHHHHHHHHHcC---CcEEE--eccCC---CCCHHHHHHHHHHHHHHH
Q 031238           84 --EEDGHSLAEKEG---LSFLE--TSALE---ATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        84 --~~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~~~~~l~~~~~~~  123 (163)
                        .++++++.+..+   +++++  +||++   +.|++++++.|.+.+...
T Consensus       132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence              134455554443   58999  99999   999999999999887554

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.46  E-value=7.8e-14  Score=109.40  Aligned_cols=112  Identities=20%  Similarity=0.117  Sum_probs=78.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCccccc--
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRA--   81 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~--   81 (163)
                      .....+.||||||+++|.......++.+|++|+|+|+++..... ...++..+..   .++| +++++||+|+.+...  
T Consensus        63 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~  138 (397)
T 1d2e_A           63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMV  138 (397)
T ss_dssp             CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHH
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHH
Confidence            33467899999999999888888899999999999999854322 2233333332   2577 789999999864221  


Q ss_pred             -CCHHHHHHHHHHcC-----CcEEEeccCCCCC----------HHHHHHHHHHHH
Q 031238           82 -VTEEDGHSLAEKEG-----LSFLETSALEATN----------VEKAFQTILTEI  120 (163)
Q Consensus        82 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~~~l~~~~  120 (163)
                       ...+++.++++..+     ++++++||+++.|          +.++++.+.+.+
T Consensus       139 ~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          139 ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence             11245566666665     4899999999764          667776665443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.46  E-value=7e-14  Score=100.00  Aligned_cols=104  Identities=12%  Similarity=-0.032  Sum_probs=67.2

Q ss_pred             CCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHH---HHHHhhc--CCCCeEEEEeeCC-CCcccccCCHHHHH
Q 031238           15 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWL---RELRDHA--DSNIVIMMAGNKS-DLNHLRAVTEEDGH   88 (163)
Q Consensus        15 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~i~~~~--~~~~piivv~nK~-Dl~~~~~~~~~~~~   88 (163)
                      .+|+..++.+|+.||.++|++|||+|++|.+-++ .+.-+   ..+....  ..++|++|++||. |++.  ..+..++.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence            4588999999999999999999999999875433 33222   2222221  1478999999995 6753  34444443


Q ss_pred             HHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           89 SLAEK----EGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        89 ~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +....    ....+..|||++|+|+.+.++||...+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            32211    2346899999999999999999987663

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.45  E-value=1.5e-13  Score=109.67  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             EEEEEEeCCChhhHhhhh--------hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYRAIT--------SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.||||+|.+.+....        ..+++.+|++++|||++++.+... ..|+..+.     ..|+++|+||+|+...
T Consensus       272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~  345 (462)
T 3geh_A          272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEK  345 (462)
T ss_dssp             EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCG
T ss_pred             EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcc
Confidence            457999999987654332        235789999999999998765543 34444442     3799999999999755


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+.  ....+.  .+.+++++||+++.|++++|+++.+.+..
T Consensus       346 ~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          346 QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4432  111111  34689999999999999999999887643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.44  E-value=1.2e-13  Score=104.63  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             EEEEEEEeCCChh-h--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQE-R--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~-~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..++.||||||.. .        +......+++.+|++++|+|+++   +.....|+.....  ..+.|+++++||+|+.
T Consensus        55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred             CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence            3578999999987 2        22334566889999999999977   2222233333222  2358999999999986


Q ss_pred             ccccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+....+....+.+.+++ .++++||+++.|++++++.+...+
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            4222223445556665666 699999999999999999988643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.43  E-value=2.1e-12  Score=100.20  Aligned_cols=117  Identities=21%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             ecCEEEEEEEEeCCCh---------hhHhhhhhhhhcCCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQ---------ERYRAITSAYYRGAVGALLVYDITKRQ--TFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~---------~~~~~~~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      +++  ..+.+|||+|.         +.+...+. .+..+|++++|+|++++.  ....+..|...+......+.|+++|+
T Consensus       223 ~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~  299 (364)
T 2qtf_A          223 INN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL  299 (364)
T ss_dssp             ETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred             ECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence            445  35789999997         22444333 578999999999999876  45555555554444433468999999


Q ss_pred             eCCCCcccccC-CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHLRAV-TEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        72 nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ||+|+...... ....+..++...   +.+++++||+++.|++++++.|.+.+..
T Consensus       300 NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             ECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            99998542210 011222333444   2368999999999999999999887654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.43  E-value=2.1e-14  Score=114.82  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccc--
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLR--   80 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~--   80 (163)
                      ...+.||||||+++|.......++.+|++|+|+|++++.   +|+...+|...+......++| +|+++||+|+....  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            357899999999999888888899999999999999862   333222222222222223577 99999999985311  


Q ss_pred             ----cCCHHHHHHHHHHc-C------CcEEEeccCCCCCHHHHHH
Q 031238           81 ----AVTEEDGHSLAEKE-G------LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        81 ----~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~~~  114 (163)
                          ....+++..+++.. +      ++++++||++|.|+.++|+
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence                11123455566655 4      4599999999999988763

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.43  E-value=1.2e-13  Score=109.56  Aligned_cols=105  Identities=13%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             EEEEEEeCCChh--------hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQE--------RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|++        .+...+..+++.+|++|+|+|++++.+..+  .|+..+...  .++|+++|+||+|+...
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccc
Confidence            358899999985        566777888999999999999998755433  333333322  36899999999998543


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ...    ..++. ..++ +++++||++|.|++++++++.+.+.
T Consensus       127 ~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          127 RAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             --C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             hhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            211    11122 3455 7899999999999999999987763

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.41  E-value=3e-13  Score=116.71  Aligned_cols=112  Identities=18%  Similarity=0.094  Sum_probs=79.2

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~   82 (163)
                      +.....+.||||||+++|.......++.+|++|+|+|++++... +...++..+...   ++| +|+++||+|+.+....
T Consensus       355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~  430 (1289)
T 3avx_A          355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEEL  430 (1289)
T ss_dssp             ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHH
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhh
Confidence            34456789999999999988888889999999999999986332 233444443332   577 8899999999642221


Q ss_pred             ---CHHHHHHHHHHcC-----CcEEEeccCCC--------CCHHHHHHHHHHH
Q 031238           83 ---TEEDGHSLAEKEG-----LSFLETSALEA--------TNVEKAFQTILTE  119 (163)
Q Consensus        83 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~~~l~~~  119 (163)
                         ..+++..+.+..+     ++++++||++|        .|+.++++.+.+.
T Consensus       431 le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          431 LELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence               1245566666665     57999999999        3466666665543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.40  E-value=2.8e-12  Score=101.74  Aligned_cols=115  Identities=21%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             ecCEEEEEEEEeCCChhhHhhh------------hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEE
Q 031238            3 VEGKTVKAQIWDTAGQERYRAI------------TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA   70 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv   70 (163)
                      ++|.  .+.+|||+|..+....            ...+++.+|++++|+|++++.+..+. .+...+..   .++|+++|
T Consensus       225 ~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv  298 (439)
T 1mky_A          225 IDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVV  298 (439)
T ss_dssp             ETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEE
T ss_pred             ECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEE
Confidence            4554  4789999998543221            12467889999999999986555432 22222222   36899999


Q ss_pred             eeCCCCcccccCCHHHHHH-HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           71 GNKSDLNHLRAVTEEDGHS-LAEK----EGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        71 ~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +||+|+.+.+....++... +.+.    .+.+++++||++|.|++++|+.+.+.+...
T Consensus       299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          299 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999987644444443322 2222    246899999999999999999998876543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.40  E-value=3.7e-14  Score=114.80  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=77.7

Q ss_pred             EEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-CHHHH
Q 031238            9 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-TEEDG   87 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~   87 (163)
                      .+.||||||++.|..++..+++.+|++|+|+|++++...... .++..+.   ..++|+++++||+|+.+.... ...+.
T Consensus        53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l  128 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKEL  128 (537)
T ss_dssp             CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence            688999999999999999999999999999999986544332 2223332   236899999999998643221 11122


Q ss_pred             HHH---HHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           88 HSL---AEKE--GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        88 ~~~---~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+   +..+  .++++++||++|.|++++|+.+...+
T Consensus       129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            111   1112  24799999999999999999988654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.39  E-value=1.3e-13  Score=109.95  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HHH---HHHHHHHHHHhhcCCCCe-EEEEeeCCCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TFD---NVLRWLRELRDHADSNIV-IMMAGNKSDL   76 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl   76 (163)
                      +.....+.||||||+++|.......++.+|++|+|+|++++.   +|+   ....++.....   .++| +|+++||+|+
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl  157 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence            344568999999999999888888899999999999999753   221   22222222222   2454 9999999998


Q ss_pred             ccccc----CCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238           77 NHLRA----VTEEDGHSLAEKEG-----LSFLETSALEATNVEKA  112 (163)
Q Consensus        77 ~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  112 (163)
                      .+...    ...+++..+++..+     ++++++||++|.|+.++
T Consensus       158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            63111    11234555666665     57999999999998755

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.36  E-value=1.1e-13  Score=107.36  Aligned_cols=115  Identities=15%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             cCEEEEEEEEeCCCh-------hhHhhhhh-------hhhcCCcEE-----------EEEEECCC-hhHHHHHH-HHHHH
Q 031238            4 EGKTVKAQIWDTAGQ-------ERYRAITS-------AYYRGAVGA-----------LLVYDITK-RQTFDNVL-RWLRE   56 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~   56 (163)
                      ++..+.+.+|||+|+       +.+..++.       .+++.++++           +++|++++ ..++..+. .|+..
T Consensus        91 ~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~  170 (361)
T 2qag_A           91 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA  170 (361)
T ss_dssp             -CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH
T ss_pred             CCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH
Confidence            456678999999999       66666655       556554432           34555443 33444443 34433


Q ss_pred             HHhhcCCCCeEEEEeeCCCCcccccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           57 LRDHADSNIVIMMAGNKSDLNHLRAVTE--EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        57 i~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +    ..++|+|+|+||+|+...+.+..  +.+..++...+++++++||+++.+ ++.|..+.+.+...
T Consensus       171 l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          171 I----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             T----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             h----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            3    23689999999999976554433  456667777789999999999999 88888888877553

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.36  E-value=1.4e-12  Score=97.39  Aligned_cols=105  Identities=9%  Similarity=-0.062  Sum_probs=71.8

Q ss_pred             CCChhhHhhhhhhhhcCCcEEEEEEECCChhHHH---HHHHHHHHHHhhc-CCCCeEEEEeeC-CCCcccccCCHHHHHH
Q 031238           15 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFD---NVLRWLRELRDHA-DSNIVIMMAGNK-SDLNHLRAVTEEDGHS   89 (163)
Q Consensus        15 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piivv~nK-~Dl~~~~~~~~~~~~~   89 (163)
                      .+|+...+.+|+.||.++|++|||+|++|.+.++   ++..+...+.... ..++|++|++|| .|++.  .++..++.+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4688899999999999999999999999876433   2222212221211 247999999997 68753  344444432


Q ss_pred             HHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           90 LAEK----EGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        90 ~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ....    ....+..|||.+|+|+.+.++||.+.+.
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            2211    2346899999999999999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2.7e-13  Score=111.52  Aligned_cols=107  Identities=15%  Similarity=0.096  Sum_probs=72.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---H---HHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---F---DNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.....+.||||||+++|.......++.+|++|+|+|++++..   +   ......+......  ...|+|+|+||+|+.
T Consensus       241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~  318 (611)
T 3izq_1          241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV  318 (611)
T ss_dssp             ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTT
T ss_pred             ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEeccccc
Confidence            3445689999999999998888889999999999999987521   1   1111222222111  124699999999986


Q ss_pred             ccccCC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q 031238           78 HLRAVT----EEDGHSLAEKEG-----LSFLETSALEATNVEKA  112 (163)
Q Consensus        78 ~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  112 (163)
                      +.....    .++...+....+     ++++++||++|.|+.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            522222    223334444444     47999999999999876

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.4e-12  Score=91.80  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=60.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcC----CcEEEEEEECC-ChhHHHHHHHHHHHHHhhc----CCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRG----AVGALLVYDIT-KRQTFDNVLRWLRELRDHA----DSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~   78 (163)
                      +.+.+|||||++.+...+..++..    +|++|+|||++ +..++..+..|+..+....    ..+.|+++|+||+|+..
T Consensus        91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A           91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence            457899999999887777777776    89999999999 8899999888888776542    24799999999999965


Q ss_pred             ccc
Q 031238           79 LRA   81 (163)
Q Consensus        79 ~~~   81 (163)
                      .+.
T Consensus       171 ~~~  173 (193)
T 2ged_A          171 ARP  173 (193)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.32  E-value=2.3e-12  Score=95.22  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             EEEEEEeCCChhhHh-----------hhhhhhhcCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCeEEEEee-CC
Q 031238            8 VKAQIWDTAGQERYR-----------AITSAYYRGAVGALLVYDITKRQTF-DNVLRWLRELRDHADSNIVIMMAGN-KS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-----------~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~n-K~   74 (163)
                      ..+.||||||+..+.           .....+++++|++|+|||+++.... ..+..|+..+..... ..|+++|+| |+
T Consensus        71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~  149 (260)
T 2xtp_A           71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKE  149 (260)
T ss_dssp             EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGG
T ss_pred             CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEccc
Confidence            468999999986542           1223367899999999999863222 223334433321111 246666665 99


Q ss_pred             CCcccccCCH-------HHHHHHHHHcCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTE-------EDGHSLAEKEGLS---F--LETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        75 Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      |+... .+..       +.++.++...+..   +  +++||+++.|++++|+.+.+.+..
T Consensus       150 Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          150 DLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            98642 2211       2244455555532   2  789999999999999999988765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.32  E-value=1.1e-12  Score=98.69  Aligned_cols=109  Identities=11%  Similarity=0.084  Sum_probs=74.6

Q ss_pred             EEEEEEeCCChh-------------hHhhhhhhhhcCCcEEE-EEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            8 VKAQIWDTAGQE-------------RYRAITSAYYRGAVGAL-LVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         8 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      ..+.||||||..             .+..+...+++.++.+| +|+|+++..+..+...++..+.   ..+.|+++|+||
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK  201 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK  201 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence            578999999963             45667778888888776 7999987544333334444443   236899999999


Q ss_pred             CCCcccccCCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHH
Q 031238           74 SDLNHLRAVTEEDGHSLAEK--EG-LSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        74 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +|+.+......+..+.....  .+ .+++++||+++.|++++|+++.+.
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            99865443223322210001  12 257889999999999999998863

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.32  E-value=1.1e-11  Score=90.49  Aligned_cols=111  Identities=12%  Similarity=0.046  Sum_probs=70.1

Q ss_pred             EEEEEEeCCCh-----------hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQ-----------ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~-----------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~   74 (163)
                      ..+.||||||.           ..+......+++++|++|+|+|+++....  ...|+..+.....  ...|+++|+||+
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~  155 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRK  155 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCC
Confidence            36789999993           34455555667789999999999754331  1222333322111  136999999999


Q ss_pred             CCcccccCC------HHHHHHHHHHcCCcEEEeccCCC-----CCHHHHHHHHHHHH
Q 031238           75 DLNHLRAVT------EEDGHSLAEKEGLSFLETSALEA-----TNVEKAFQTILTEI  120 (163)
Q Consensus        75 Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~  120 (163)
                      |+.....+.      .+..+.+++..+..++.++...+     .++.++|+.+...+
T Consensus       156 D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          156 DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             GGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            986544433      23567778888888888877654     46777777665554

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.31  E-value=2.5e-13  Score=109.15  Aligned_cols=104  Identities=21%  Similarity=0.273  Sum_probs=73.6

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc--cC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR--AV   82 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~--~~   82 (163)
                      ..+.||||||++.|..++...++.+|++|+|+|++++   ++.+.+    .....   .++|+++++||+|+....  .+
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v  123 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRV  123 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHH
Confidence            3578999999999999888889999999999999874   333332    22221   368999999999986421  11


Q ss_pred             CHH--HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q 031238           83 TEE--DGHSLAEKEG--LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        83 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      ..+  +...+...++  ++++++||++|.|++++|+++..
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            100  0000112222  58999999999999999998764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.30  E-value=8.6e-12  Score=103.58  Aligned_cols=67  Identities=13%  Similarity=0.056  Sum_probs=53.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.++||||+|+.++...+..+++.+|++++|+|+++..... ...++..+...   ++|+++|+||+|+.
T Consensus        73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence            467899999999999888889999999999999998764432 23444444432   68999999999985

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.30  E-value=1.4e-12  Score=103.89  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=71.3

Q ss_pred             EEEEEEeCCC--------hhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAG--------QERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|        ++.+......+++.+|++|+|+|..++...  ...|+..+...  .++|+++|+||+|+.+.
T Consensus        71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-----
T ss_pred             ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhh
Confidence            4688999999        777888888999999999999998874332  22333333332  36899999999998532


Q ss_pred             ccCCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..    ...++. ..++ .++++||++|.|+.++++.+.+.+
T Consensus       147 ~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          147 RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             --------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             hh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence            11    111111 2243 578999999999999999987755

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.27  E-value=1.5e-12  Score=97.18  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             cCEEEEEEEEeCCChh-------hHhhhh-------hhhhc-------------CCcEEEEEEECCChhHHHHHHHHHHH
Q 031238            4 EGKTVKAQIWDTAGQE-------RYRAIT-------SAYYR-------------GAVGALLVYDITKRQTFDNVLRWLRE   56 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~-------~~~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~   56 (163)
                      ++..+.+.||||||..       .+..+.       ..++.             ++|+++++++.+.......-..++..
T Consensus        61 ~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~  140 (274)
T 3t5d_A           61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR  140 (274)
T ss_dssp             --CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHH
T ss_pred             CCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHH
Confidence            4445789999999972       222222       23333             37899999977652111111334444


Q ss_pred             HHhhcCCCCeEEEEeeCCCCcccccCC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           57 LRDHADSNIVIMMAGNKSDLNHLRAVT--EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        57 i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..    ++|+++|+||+|+.......  .+.+.+.....+++++.+||.+++|+++++++|.+.
T Consensus       141 l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          141 LHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             Hhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            432    58999999999985432221  233455556678899999999999999998887654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.24  E-value=4.3e-11  Score=96.95  Aligned_cols=69  Identities=20%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+.+.||||||+.+|......+++.+|++|+|+|++++... ....++....   ..++|+++++||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            346789999999999888888899999999999999976432 2233333332   23689999999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.23  E-value=9.9e-11  Score=97.78  Aligned_cols=69  Identities=20%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +..+.+.||||||+.+|...+..+++.+|++|+|+|+++.........| .....   .++|+++|+||+|+.
T Consensus        79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~  147 (704)
T 2rdo_7           79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRM  147 (704)
T ss_pred             CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCcc
Confidence            3458899999999999988888999999999999999987655443333 32222   368999999999984

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.22  E-value=6.4e-11  Score=98.73  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++|+||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            3678999999999998888999999999999999998777665555543 332   2689999999999853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.21  E-value=5.7e-11  Score=99.12  Aligned_cols=112  Identities=15%  Similarity=0.154  Sum_probs=79.0

Q ss_pred             EEEEEeCCChhhH---hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            9 KAQIWDTAGQERY---RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         9 ~l~l~Dt~G~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.||||||....   ......+++++|++|+|+|++++.+..+...|...+..   .+.|+++|+||+|+.....++.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            5899999998663   34556788999999999999988777666555444332   25789999999998654311111


Q ss_pred             ----------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCHHHHHHHHHHHHHHH
Q 031238           86 ----------DGHS-----LAEK--------EGLSFLETSAL--------------EATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        86 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~~  123 (163)
                                ....     +...        ...+++++||+              ++.|++++++.+.+.+...
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence                      1111     1111        12369999999              9999999999998877543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.18  E-value=1.1e-10  Score=90.63  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             ChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHH----HHH
Q 031238           17 GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHS----LAE   92 (163)
Q Consensus        17 G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~   92 (163)
                      ..++|..+++.+++.++++++|+|++++.     ..|...+.+... ++|+++|+||+|+... ....+...+    +++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            45788889999999999999999999853     345555555444 6899999999998643 233333333    356


Q ss_pred             HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238           93 KEGL---SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        93 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ..++   .++.+||+++.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999988653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.17  E-value=8.8e-12  Score=96.45  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=73.4

Q ss_pred             EEEEEeCCChhhH-------------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            9 KAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         9 ~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .+.||||||...+             ..+...+++++|++|+|+|..+.....  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5789999998665             567778899999999999876432221  2333333444445689999999999


Q ss_pred             CcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 031238           76 LNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT  115 (163)
Q Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  115 (163)
                      +.+......+..+.+....++.|+++++.++.++++.+..
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            8765554444444444445678999999998877765443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.17  E-value=1.6e-10  Score=91.08  Aligned_cols=112  Identities=16%  Similarity=0.102  Sum_probs=80.2

Q ss_pred             EEEEEEeCCChhh----Hhhhhhh---hhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQER----YRAITSA---YYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~----~~~~~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~   78 (163)
                      ..+.+||++|...    +..+...   .+..++.+++++|++ ...+.++..|..++..+..  ...|.++|+||+|+..
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            4578999999732    1112222   245799999999998 5566677777766665432  2478999999999864


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .  ...+.........+..++.+||++++|++++++++.+.+..
T Consensus       284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence            3  12334444555557889999999999999999999988854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.13  E-value=5.7e-13  Score=109.29  Aligned_cols=102  Identities=24%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh---HH---HHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ---TF---DNVLRWLRELRDHADSNIV-IMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~   78 (163)
                      ....+.||||||+++|.......++.+|++|+|+|++++.   .+   ......+..+..   .++| +|+|+||+|+.+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence            3467899999999999887778899999999999998632   11   111122222221   2455 999999999864


Q ss_pred             cccC----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q 031238           79 LRAV----TEEDGHSLA-EKEGL-----SFLETSALEATNVE  110 (163)
Q Consensus        79 ~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  110 (163)
                      ....    ...++..+. ...++     +++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            1111    122333444 44454     69999999999998

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.11  E-value=1.7e-10  Score=87.27  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=68.9

Q ss_pred             EEEEEEeCCChhh-------------HhhhhhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            8 VKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         8 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      ..+.||||||...             +......+++++|++++|+|.++.. .-.....+...+.   ..+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence            4689999999753             5566778899999999999974321 1111112233222   236899999999


Q ss_pred             CCCcccccCCHHHHHHHHHHcCCcEEEeccCC------CCCHHHHHHHHHHHHH
Q 031238           74 SDLNHLRAVTEEDGHSLAEKEGLSFLETSALE------ATNVEKAFQTILTEIY  121 (163)
Q Consensus        74 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~~~~  121 (163)
                      +|+........+.........+..++++++.+      +.|+.++++.+.+.+.
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            99865443223222211111225677776644      6788888888776664

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.11  E-value=4.8e-10  Score=93.51  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      .+.+.||||||+.++...+..+++.+|++|+|+|++++.+......|. .+..   .++|+++|+||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            357899999999998888888999999999999999876665554443 3333   2689999999999853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.11  E-value=2.5e-10  Score=84.09  Aligned_cols=109  Identities=15%  Similarity=-0.032  Sum_probs=68.2

Q ss_pred             EEEEEEeCCChhhHhhhhh------hhhcCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYRAITS------AYYRGAVGALLVYDITKR---QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~------~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      +.+.||||+|.........      ..+.. +++|+++|+...   ..+.....+......  ..++|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence            5789999999976543321      24566 899999987643   222222111111111  12589999999999854


Q ss_pred             cccCCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHS----------------------------LAEKEG--LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ...+  ++...                            +++.++  .+++++||+++.|++++++++.+.+.
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            3221  11111                            123333  47999999999999999999987664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.09  E-value=4.6e-10  Score=79.82  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             EEEEEeCCChh----------hHhhhhhhhh---cCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            9 KAQIWDTAGQE----------RYRAITSAYY---RGAVGALLVYDITKRQTFDN--VLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         9 ~l~l~Dt~G~~----------~~~~~~~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      .+.+|||+|..          .+......++   ..++++++++|++++.+...  +..|+..      .+.|+++++||
T Consensus        73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v~nK  146 (210)
T 1pui_A           73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVLLTK  146 (210)
T ss_dssp             TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEEC
T ss_pred             CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEec
Confidence            36899999973          2333333444   57899999999988654432  2333321      25899999999


Q ss_pred             CCCcccc--cCCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           74 SDLNHLR--AVTEEDGHSLAEKEG--LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        74 ~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +|+....  +.....+..++...+  +.++++||+++.|++++++.+.+.+.
T Consensus       147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            9975321  111234445555554  46889999999999999998877653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.06  E-value=3.4e-10  Score=87.97  Aligned_cols=97  Identities=20%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             CChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHH----HH
Q 031238           16 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHS----LA   91 (163)
Q Consensus        16 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~   91 (163)
                      ..+++|...+..++.+++++++|+|++++.+     .|...+.+... ++|+++|+||.|+... ....+...+    ++
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR-SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence            4577889999999999999999999998763     23333333333 6899999999998653 223333333    34


Q ss_pred             HHcCC---cEEEeccCCCCCHHHHHHHHHHH
Q 031238           92 EKEGL---SFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        92 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..|+   .++.+||+++.|++++++.+.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            55666   68999999999999999988654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.05  E-value=1.3e-10  Score=89.89  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      .+.+.||||+|....   ....+..+|++++|+|.+..+.+..+...      .  ...|+++|+||+|+...... ...
T Consensus       171 ~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~~------~--~~~p~ivVlNK~Dl~~~~~~-~~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKKG------V--LELADIVVVNKADGEHHKEA-RLA  238 (355)
T ss_dssp             TCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCTT------S--GGGCSEEEEECCCGGGHHHH-HHH
T ss_pred             CCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHHh------H--hhcCCEEEEECCCCcChhHH-HHH
Confidence            357899999995332   22345889999999998765444222110      1  13689999999998542221 111


Q ss_pred             HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           87 GHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        87 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...+...          ++.+++++||++|.|++++++++.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222221          24689999999999999999999988765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.03  E-value=1.3e-09  Score=88.65  Aligned_cols=70  Identities=20%  Similarity=0.125  Sum_probs=55.6

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+.++|+||||+.+|.......++-+|++|+|+|+..+..-....-| ....++   ++|.++++||+|..
T Consensus        96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~  165 (548)
T 3vqt_A           96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDRE  165 (548)
T ss_dssp             EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSC
T ss_pred             EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccch
Confidence            33456789999999999998888999999999999999987555444444 333333   68999999999974

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.03  E-value=3.5e-10  Score=81.21  Aligned_cols=104  Identities=11%  Similarity=0.046  Sum_probs=69.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.+|||+|+....   ..+....+.+++|+|++.....  ...+...   .   +.|+++|+||+|+........+..
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence            467899999851111   1112357889999999865321  1111111   1   368899999999865433455666


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           88 HSLAEKE--GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        88 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...++..  +.+++++||++|.|++++|+++.+.+..
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            6666554  3689999999999999999999887644

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.00  E-value=8.8e-11  Score=88.87  Aligned_cols=111  Identities=13%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             CEEEEEEEEeCCCh-------hhHhhhhh-------hhhcC-------------CcEEEEEEECCChhHHHHHH-HHHHH
Q 031238            5 GKTVKAQIWDTAGQ-------ERYRAITS-------AYYRG-------------AVGALLVYDITKRQTFDNVL-RWLRE   56 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~-~~~~~   56 (163)
                      +....+.+|||+|.       +.+..+..       .+++.             +++++++.+.+.. +++... .++..
T Consensus        73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~  151 (301)
T 2qnr_A           73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKA  151 (301)
T ss_dssp             -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHH
T ss_pred             CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHH
Confidence            33467899999998       44444443       34333             3345555554321 222222 22222


Q ss_pred             HHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           57 LRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        57 i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                         .. ...|+++|+||.|+...+++  ..+++.++++.++++++++||+++ |++++|..+.+.+.
T Consensus       152 ---l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          152 ---IH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             ---HT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             ---HH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence               22 35799999999998654332  245778888889999999999999 99999999988774

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.95  E-value=7.4e-10  Score=82.01  Aligned_cols=75  Identities=9%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhc---------CCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCC--CCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYR---------GAVGALLVYDITKRQTFDNV-LRWLRELRDHADS--NIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~--~~piivv~nK~D   75 (163)
                      ..+.||||||+.++......+++         ++|++++|++++... +... ..|+..+......  ..|+++|+||+|
T Consensus        84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D  162 (262)
T 3def_A           84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ  162 (262)
T ss_dssp             EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred             eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence            47899999999776554444433         789999999997644 3332 4566666654432  249999999999


Q ss_pred             CcccccCC
Q 031238           76 LNHLRAVT   83 (163)
Q Consensus        76 l~~~~~~~   83 (163)
                      +...+...
T Consensus       163 l~~~~~~~  170 (262)
T 3def_A          163 FSPPDELS  170 (262)
T ss_dssp             CCCSTTCC
T ss_pred             cCCCCCcc
Confidence            85433333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.91  E-value=5.6e-10  Score=87.48  Aligned_cols=49  Identities=27%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                      .+|+++|+||.|+.. .. ..+...+.....+.+++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~~-~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC-HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc-hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            389999999999752 11 11222222233367899999999988876543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.87  E-value=2e-09  Score=91.56  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=58.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ++..+.+.||||||+.+|...+..+++.+|++|+|+|++++.++.....|.... .   .++|+++|+||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            455889999999999999999999999999999999999987776655554332 2   368999999999985

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=8.2e-09  Score=77.37  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=68.4

Q ss_pred             eCCChh-hHhhhhhhhhcCCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHH
Q 031238           14 DTAGQE-RYRAITSAYYRGAVGALLVYDITKRQTFD--NVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSL   90 (163)
Q Consensus        14 Dt~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~   90 (163)
                      ..||+. .........++.+|++++|+|+.++.+..  .+..|+        .++|+++|+||+|+.+...  .+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence            467775 33444556789999999999999986653  333332        2689999999999964211  1222333


Q ss_pred             HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           91 AEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        91 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+..+++++.+||.++.|++++++.+.+.+...
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            444578999999999999999999887766543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.84  E-value=3e-09  Score=79.06  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=50.0

Q ss_pred             EEEEEEEeCCChhhHhhhhh-------hh--hcCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCC--CeEEEEeeCC
Q 031238            7 TVKAQIWDTAGQERYRAITS-------AY--YRGAVGALLVYDITKRQTFDNV-LRWLRELRDHADSN--IVIMMAGNKS   74 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~-------~~--~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piivv~nK~   74 (163)
                      ...+.||||||+.++.....       .+  ..++|++++|+|++.. ++... ..|+..+....+.+  .|+++|+||+
T Consensus        86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~  164 (270)
T 1h65_A           86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHA  164 (270)
T ss_dssp             TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred             CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence            35789999999865532211       11  3479999999998753 23322 36666665543322  6999999999


Q ss_pred             CCcccccCC
Q 031238           75 DLNHLRAVT   83 (163)
Q Consensus        75 Dl~~~~~~~   83 (163)
                      |+.......
T Consensus       165 Dl~~~~~~~  173 (270)
T 1h65_A          165 QFSPPDGLP  173 (270)
T ss_dssp             SCCCGGGCC
T ss_pred             ccCCcCCCC
Confidence            986544433

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.82  E-value=7.5e-09  Score=79.52  Aligned_cols=103  Identities=16%  Similarity=0.078  Sum_probs=64.9

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCH--H
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTE--E   85 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~--~   85 (163)
                      +.+.||||+|.......   ..+.+|++++|+|++....+..+..   ..     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            56899999997654332   4689999999999976533221111   00     1367899999999854222111  1


Q ss_pred             HHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           86 DGHSLAEKE-------GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        86 ~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +........       ..+++++||++|.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            222211121       346899999999999999999998765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.81  E-value=1.1e-09  Score=84.59  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             EEEEEEeCCChh-------------hHhhhhhhhhcCCc-EEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeC
Q 031238            8 VKAQIWDTAGQE-------------RYRAITSAYYRGAV-GALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNK   73 (163)
Q Consensus         8 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK   73 (163)
                      ..+.||||||..             .+..+...++++++ ++++|.|++....-.+...++..+   .+.+.|+++|+||
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~---~~~~~~~i~V~NK  206 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV---DPQGQRTIGVITK  206 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH---CTTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh---CcCCCceEEEecc
Confidence            568999999952             45566677776665 445556665432211222233333   3346899999999


Q ss_pred             CCCcccccCCHHHHHHH--HHHcCC-cEEEeccCCCCCHHHHHHHHHH
Q 031238           74 SDLNHLRAVTEEDGHSL--AEKEGL-SFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        74 ~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      +|+.+......+..+..  ....++ .++++||+++.|++++++++.+
T Consensus       207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            99865433222221100  001122 4678999999999999888875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.77  E-value=2.8e-09  Score=83.97  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             EEEEEEEeCCChhhHh-------h------------------hhhhhhcCCcEEEEEEECCCh-hHHHHHH-HHHHHHHh
Q 031238            7 TVKAQIWDTAGQERYR-------A------------------ITSAYYRGAVGALLVYDITKR-QTFDNVL-RWLRELRD   59 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~-------~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~i~~   59 (163)
                      ...+.+||++|...+.       .                  +.+.++.++++.+++|..+.. .++.... .|+..+. 
T Consensus        87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-  165 (418)
T 2qag_C           87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-  165 (418)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred             ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence            3478999999975431       1                  112344555544444433321 2233332 5665553 


Q ss_pred             hcCCCCeEEEEeeCCCCcccccCCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           60 HADSNIVIMMAGNKSDLNHLRAVTE--EDGHSLAEKEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        60 ~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                         .++|+|+|+||+|+...+.+..  +.+...+...+++++++|++++.+++++|..+..
T Consensus       166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence               2689999999999865554433  5667777888999999999999999987776654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.76  E-value=4.1e-09  Score=87.16  Aligned_cols=70  Identities=23%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.+.++|+||||+.+|.......++-+|++|+|+|+..+..-.. ...+......   ++|.++++||+|..
T Consensus        63 ~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~---~lp~i~~INKmDr~  132 (638)
T 3j25_A           63 QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM---GIPTIFFINKIDQN  132 (638)
T ss_dssp             BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH---TCSCEECCEECCSS
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc---CCCeEEEEeccccc
Confidence            4445678999999999999888899999999999999997644332 3333344433   58899999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.74  E-value=7.5e-08  Score=74.20  Aligned_cols=103  Identities=11%  Similarity=0.019  Sum_probs=62.4

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.|+||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++|+||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46789999996422   1334678999999999987543322211   11     13578999999998532111 1111


Q ss_pred             HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           88 HSLAE----------KEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        88 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+..          .+..+++.+||+++.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211          123568999999999999999999887644

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.69  E-value=1.3e-07  Score=79.16  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=54.2

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ..+.++|+||||+.+|.......++-+|++|+|+|+..+.......-| ....+.   ++|.++++||+|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH---TCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc---CCCeEEEEcccccc
Confidence            468899999999999999888999999999999999976554333333 333333   68999999999973

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.50  E-value=4.1e-08  Score=82.34  Aligned_cols=105  Identities=11%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             EEEEEeCCChhh-------------Hhhhhhhhh-cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            9 KAQIWDTAGQER-------------YRAITSAYY-RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         9 ~l~l~Dt~G~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      .+.|+||||...             ...+...++ ..+|++++|+|++.+..-.+...++..+.   ..+.|+++|+||+
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi  227 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL  227 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence            467999999533             233444444 57899999999986432222223333332   3368999999999


Q ss_pred             CCcccccCCHHHHHHHHHH----cC-CcEEEeccCCCCCHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEK----EG-LSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      |+.+..........  .+.    .+ .+++.+||+++.|++++++.+.+
T Consensus       228 Dlv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          228 DLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             TSSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             ccCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            98754433222111  011    12 25678899999999999888775

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.50  E-value=5.8e-08  Score=79.02  Aligned_cols=68  Identities=22%  Similarity=0.221  Sum_probs=51.7

Q ss_pred             EEEEEeCCChhh-----------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            9 KAQIWDTAGQER-----------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         9 ~l~l~Dt~G~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      .+.||||||...           +......++..+|++|+|+|+++.........|+..+..   .+.|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence            589999999864           556677788999999999999875444445556655433   257999999999986


Q ss_pred             cc
Q 031238           78 HL   79 (163)
Q Consensus        78 ~~   79 (163)
                      ..
T Consensus       232 ~~  233 (550)
T 2qpt_A          232 ET  233 (550)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.49  E-value=2.4e-06  Score=66.03  Aligned_cols=42  Identities=17%  Similarity=0.044  Sum_probs=30.5

Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccCC
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE  105 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  105 (163)
                      .+|+++++|+.|.........+.+..++...+.+++++||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            499999999998532122224566778877888999999753

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.40  E-value=9.3e-07  Score=67.77  Aligned_cols=104  Identities=12%  Similarity=0.033  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      .+.+.|+||+|...-..   .....+|.+++++|+..++....+.....        ..+.++++||.|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~--------~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh--------ccccEEEEEchhccCchhHHHHH
Confidence            35689999999753221   23578999999999875432221111111        13456777999974322222222


Q ss_pred             HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           87 GHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        87 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+.+...          +..+++.+||+++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2333221          1347899999999999999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.39  E-value=1.6e-06  Score=67.21  Aligned_cols=52  Identities=13%  Similarity=0.017  Sum_probs=36.8

Q ss_pred             CCeEEEEeeCCCC--ccc-ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q 031238           64 NIVIMMAGNKSDL--NHL-RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQT  115 (163)
Q Consensus        64 ~~piivv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  115 (163)
                      .+|+++++||.|.  .+. +....+.++.+++..+.+++++||+...++.++++.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            3899999999974  221 122346677788888899999999886666655443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.37  E-value=1.9e-07  Score=69.24  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=60.3

Q ss_pred             CChhhH-hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHc
Q 031238           16 AGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE   94 (163)
Q Consensus        16 ~G~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~   94 (163)
                      ||+... .......++++|++++|+|+.++.+.....  +. +   .  ++|.++|+||+|+.+...  .+....+.+..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~   74 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKKQ   74 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHHc
Confidence            555422 223456689999999999999876543210  01 1   1  589999999999964211  12223344455


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           95 GLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        95 ~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ++++ .+||+++.|++++++.+...
T Consensus        75 g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           75 GKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             CCeE-EEECCCCcCHHHHHHHHHHh
Confidence            7888 99999999999998876543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.35  E-value=6e-07  Score=64.32  Aligned_cols=57  Identities=14%  Similarity=0.060  Sum_probs=46.1

Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .|+++|+||+|+...+....++...++...  +.+++++||++|.|++++|+++.+.+.
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            677999999998654445666777676654  568999999999999999999987764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.30  E-value=1.7e-07  Score=70.97  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=59.8

Q ss_pred             hhhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--CHHHHHHHHHHcCCcE
Q 031238           22 RAITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--TEEDGHSLAEKEGLSF   98 (163)
Q Consensus        22 ~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~   98 (163)
                      +.+.+...+++|.+++|+|+.+|.. ...+..++....   ..++|.++|+||+||.+....  ..+......+..|+++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            4556667899999999999987653 333344433222   236899999999999643210  0122333344568899


Q ss_pred             EEeccCCCCCHHHHHH
Q 031238           99 LETSALEATNVEKAFQ  114 (163)
Q Consensus        99 ~~~Sa~~~~~i~~~~~  114 (163)
                      +.+||.++.|+++++.
T Consensus       154 ~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIP  169 (307)
T ss_dssp             EECCHHHHTTCTTTGG
T ss_pred             EEEecCCCCCHHHHHh
Confidence            9999999888776554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.05  E-value=1.6e-05  Score=61.36  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             hhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC-HHHHHHHHHHcCCcEEEeccCC
Q 031238           28 YYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT-EEDGHSLAEKEGLSFLETSALE  105 (163)
Q Consensus        28 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~  105 (163)
                      ..+++|.+++|+.. +|. +...+..++......   ++|.++|+||+||.+..... .+.........|++++.+||.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46899999988765 453 333344444332222   57889999999996432100 1112223345688999999999


Q ss_pred             CCCHHHHHHH
Q 031238          106 ATNVEKAFQT  115 (163)
Q Consensus       106 ~~~i~~~~~~  115 (163)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.001  Score=51.66  Aligned_cols=105  Identities=13%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             EEEEEEeCCChhhHh-------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~   78 (163)
                      .+++|.||||.....       ...-..++.+|++++|+|++++..  ....+..++.....  ...|.+++.||.|...
T Consensus       119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            468899999974321       111234678999999999998743  22222333332221  3578889999999631


Q ss_pred             --------cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q 031238           79 --------LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        79 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  114 (163)
                              ......++.+.+...+.+.--.+-...+...+++.+
T Consensus       197 i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          197 ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred             hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence                    123456666666666555322222233344455443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.29  E-value=0.00027  Score=56.93  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             EEEEEEEeCCChhhHh-hhh---hhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeE-EEEeeCCCCccc
Q 031238            7 TVKAQIWDTAGQERYR-AIT---SAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI-MMAGNKSDLNHL   79 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~-~~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~   79 (163)
                      .+.+.|+||||..... .+.   ...  +..+|.+++|+|++.........   ..+..    .+|+ ++|+||.|....
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~----~~~i~gvVlNK~D~~~~  255 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD----KVDVASVIVTKLDGHAK  255 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH----HHCCCCEEEECTTSCCC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh----hcCceEEEEeCCccccc
Confidence            3568999999975321 111   111  22789999999998754322221   22221    1464 789999997532


Q ss_pred             ccCCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSF------------------LETSALEATN-VEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~  119 (163)
                      ..    .........+.++                  +.+|+..|.| +.++++++.+.
T Consensus       256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            11    1112223333332                  3468899998 98888888755

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.66  E-value=0.019  Score=44.69  Aligned_cols=42  Identities=7%  Similarity=-0.024  Sum_probs=29.4

Q ss_pred             CCeEEEEeeCCCCcc--cccCCHHHHHHHHHHcC--CcEEEeccCC
Q 031238           64 NIVIMMAGNKSDLNH--LRAVTEEDGHSLAEKEG--LSFLETSALE  105 (163)
Q Consensus        64 ~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  105 (163)
                      .+|+++++|+.|-.-  +...-.+.+.+++...+  .+++.+||+.
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            389999999998321  11223566777777665  7899999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.54  E-value=0.0017  Score=50.66  Aligned_cols=36  Identities=11%  Similarity=-0.016  Sum_probs=23.6

Q ss_pred             EEEEEeCCChhhHhh-------hhhhhhcCCcEEEEEEECCCh
Q 031238            9 KAQIWDTAGQERYRA-------ITSAYYRGAVGALLVYDITKR   44 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~-------~~~~~~~~~d~ii~v~d~~~~   44 (163)
                      .++||||||......       ....+++++|++++|+|+++.
T Consensus        87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            589999999876543       345678999999999999754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.03  E-value=0.017  Score=45.67  Aligned_cols=91  Identities=18%  Similarity=0.112  Sum_probs=53.0

Q ss_pred             EEEEEEeCCChhhH-----hhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            8 VKAQIWDTAGQERY-----RAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      +.+.|+||+|....     ..+.. .....+|.+++|+|++.........   ..+...   -.+..+|.||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh---CCCeEEEEECCCCcc---
Confidence            56889999995321     11111 1233579999999998754433322   222222   234568999999742   


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVE  110 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  110 (163)
                       ..-.........+.++.+++.  |++++
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             -cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence             122334445566888877776  55544

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.73  E-value=0.03  Score=38.76  Aligned_cols=85  Identities=11%  Similarity=-0.049  Sum_probs=53.1

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCeEEEEeeCCCCcccccCCHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA--DSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      +.+.++|+++..  .......+..+|.+|++...+...  ..+...+..+....  ..+.++.+|.|+.|...  .. ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence            567899999876  333445677799999999876443  45555555554432  23567899999998532  11 23


Q ss_pred             HHHHHHHHcCCcEE
Q 031238           86 DGHSLAEKEGLSFL   99 (163)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (163)
                      +..+..+..+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            34445555565444

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.56  E-value=0.049  Score=40.71  Aligned_cols=91  Identities=15%  Similarity=0.047  Sum_probs=54.4

Q ss_pred             EEEEEEeCCChhh--Hhh-hhh-----hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQER--YRA-ITS-----AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~   78 (163)
                      +.+.|+||||...  ... +..     .....+|.+++|+|++......   .....+..    ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY---DLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH---HHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4689999999765  211 111     1244789999999987543221   11222221    244 678999999632


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEK  111 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  111 (163)
                          .......+....+.++..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23334556667788887776  4666654

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=94.65  E-value=0.24  Score=35.17  Aligned_cols=86  Identities=13%  Similarity=0.060  Sum_probs=56.6

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.|+|+++...  ......+..+|.+|++... +..++..+..++..+.........+.+|.|+.+..  .....+  
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~--~~~~~~--  191 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN--SRITSD--  191 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC--TTSCHH--
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC--CCCCHH--
Confidence            5678999987642  2344567789999999876 45667777777777665543345678899999853  223333  


Q ss_pred             HHHHHHcCCcEEEe
Q 031238           88 HSLAEKEGLSFLET  101 (163)
Q Consensus        88 ~~~~~~~~~~~~~~  101 (163)
                       .+.+..+.+++..
T Consensus       192 -~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 -EIEKVIGRPISKR  204 (245)
T ss_dssp             -HHHHHHTSCEEEE
T ss_pred             -HHHHHhCCCeEEE
Confidence             3444567776654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.60  E-value=0.064  Score=42.33  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=53.1

Q ss_pred             EEEEEEeCCChhh--H-----hhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQER--Y-----RAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~--~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.+.|.||+|...  .     ..+.. ...-..+.+++|+|+.......+....+..   .   -.+..||+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c---cCCcEEEEecccccc-
Confidence            4578999999633  1     11111 112246899999999875443333332322   2   135678999999632 


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNV  109 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  109 (163)
                         ..-.........+.++.+++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               223344455567888888876  6654

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.59  E-value=0.14  Score=35.85  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCh-hhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.++|+++. ...  .....+..+|.+|++...+ ..++..+...+..+....  +.++.+|.|+.+.... . ...+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~-~-~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS-K-DGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS-C-HHHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc-h-HHHH
Confidence            45789999886 432  2345677899999998764 455666666666665432  3568899999985320 1 1334


Q ss_pred             HHHHHHHcCCcEE
Q 031238           87 GHSLAEKEGLSFL   99 (163)
Q Consensus        87 ~~~~~~~~~~~~~   99 (163)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4444555665544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.34  E-value=0.72  Score=36.26  Aligned_cols=83  Identities=16%  Similarity=0.025  Sum_probs=46.0

Q ss_pred             EEEEEEeCCChhhHh-----hhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCC-e-EEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNI-V-IMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iivv~nK~Dl~~~   79 (163)
                      +.+.|+||+|.....     .+.. ..+..+|.+++|+|++.....   ......+   .. .. | ..+|.||.|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~---~~-~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF---KE-AVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence            467899999975321     1110 112368999999999765421   1112222   22 34 5 7889999997421


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEe
Q 031238           80 RAVTEEDGHSLAEKEGLSFLET  101 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (163)
                          ......+....+.++..+
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                112233455556554444

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=93.05  E-value=0.27  Score=35.58  Aligned_cols=91  Identities=18%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcc-----c
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNH-----L   79 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~-----~   79 (163)
                      ..+.+.|+|+++...........+..+|.+|++...+. .+...+...+..+...   +.+++ +|.|+.|...     .
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~  202 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK  202 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence            34678999999864321111122336899999987653 3455555555555433   45666 8999987411     1


Q ss_pred             ccC-CHHHHHHHHHHcCCcEEE
Q 031238           80 RAV-TEEDGHSLAEKEGLSFLE  100 (163)
Q Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~  100 (163)
                      ..+ .......+.+..+.+++.
T Consensus       203 ~~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          203 SYIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             ECTTCCCCHHHHHHHTTCSEEE
T ss_pred             cccccccHHHHHHHHcCCCeEE
Confidence            111 112234555667777654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=92.58  E-value=0.33  Score=34.93  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=41.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHH---HHHHHhhcCCCCeEE-EEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSNIVIM-MAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~i~~~~~~~~pii-vv~nK~Dl   76 (163)
                      .+.+.|+|+++.....  ....+..+|.+|++...+. .++..+..+   +..+......+.+++ +|.|+.+.
T Consensus       111 ~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             TCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             CCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            3568999999864322  2344567999999998754 344444433   333332222356764 89999875

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=92.52  E-value=0.36  Score=34.88  Aligned_cols=64  Identities=6%  Similarity=-0.082  Sum_probs=44.4

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..++..+......+..... +.++.+|.|+.+
T Consensus       145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~~  208 (267)
T 3k9g_A          145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNL-FLPIFLIITRFK  208 (267)
T ss_dssp             CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTC-CCCEEEEEEEEC
T ss_pred             CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhc-cCCEEEEEeccc
Confidence            5678999987642  23445567799999999874 4456666666666555533 467889999984

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=92.11  E-value=0.85  Score=32.68  Aligned_cols=83  Identities=10%  Similarity=-0.011  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.|+|+++...  ......+..+|.+|++...+ ..++..+...+..+... + ..++-+|.|+.+.....    ...
T Consensus       111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~-~~~~~vv~N~~~~~~~~----~~~  181 (263)
T 1hyq_A          111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-G-TKVLGVVVNRITTLGIE----MAK  181 (263)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-T-CEEEEEEEEEECTTTHH----HHH
T ss_pred             CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc-C-CCeeEEEEccCCccccc----chH
Confidence            4678999997644  23344567899999998764 44566666655555544 2 24556899999853211    334


Q ss_pred             HHHHHHcCCcEE
Q 031238           88 HSLAEKEGLSFL   99 (163)
Q Consensus        88 ~~~~~~~~~~~~   99 (163)
                      ..+.+..+.+++
T Consensus       182 ~~~~~~~~~~~~  193 (263)
T 1hyq_A          182 NEIEAILEAKVI  193 (263)
T ss_dssp             HHHHHHTTSCEE
T ss_pred             HHHHHHhCCCeE
Confidence            445555666544

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.58  E-value=0.96  Score=31.75  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=43.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.+.++|+++...  ......+..+|.+|++...+ ..++..+...+..+... + ...+-+|.|+.+..
T Consensus       112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~-~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-G-LAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-T-CEEEEEEEEEETSC
T ss_pred             CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC-C-CceEEEEEecCCcc
Confidence            5678999987644  23345678899999998764 44566666666655544 2 24566899999853

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=90.83  E-value=0.35  Score=34.57  Aligned_cols=67  Identities=10%  Similarity=-0.038  Sum_probs=45.2

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC------CCCeEEEEeeCCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD------SNIVIMMAGNKSDL   76 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~------~~~piivv~nK~Dl   76 (163)
                      .+.+.++|+++....  .....+..+|.+|++.+. +..++..+..++..+.....      ....+.+|.|+.+.
T Consensus       113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            356889999985432  345567789999999976 44566666666655543321      12567889999884

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.71  E-value=2.3  Score=33.22  Aligned_cols=104  Identities=10%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             EEEEEeCCChhhH----hh-hhhhhhcCCcEEEEEEECC--ChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc--c-
Q 031238            9 KAQIWDTAGQERY----RA-ITSAYYRGAVGALLVYDIT--KRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN--H-   78 (163)
Q Consensus         9 ~l~l~Dt~G~~~~----~~-~~~~~~~~~d~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~--~-   78 (163)
                      .+.+||++|....    .. +...-+...+.+++ ++..  ..... .+..++   ..   .+.|+++|.||.|+.  + 
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv-~la~aL---~~---~~~p~~lV~tkpdlllLDE  192 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI-DIAKAI---SM---MKKEFYFVRTKVDSDITNE  192 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH-HHHHHH---HH---TTCEEEEEECCHHHHHHHH
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH-HHHHHH---Hh---cCCCeEEEEecCcccccCc
Confidence            4688999985321    11 11112344455554 7765  22111 122222   21   258999999999963  1 


Q ss_pred             ----cccCCHHH----HHHHHH----HcC---CcEEEecc--CCCCCHHHHHHHHHHHH
Q 031238           79 ----LRAVTEED----GHSLAE----KEG---LSFLETSA--LEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ----~~~~~~~~----~~~~~~----~~~---~~~~~~Sa--~~~~~i~~~~~~l~~~~  120 (163)
                          -.....++    +..+..    +.+   -.++.+|+  ..+.|++++.+.+.+.+
T Consensus       193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence                11222332    333331    222   25788999  66667999988887655

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=89.87  E-value=0.02  Score=44.18  Aligned_cols=90  Identities=14%  Similarity=0.046  Sum_probs=48.4

Q ss_pred             EEEEeCCChhhHhh--------hhhhhh--cCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238           10 AQIWDTAGQERYRA--------ITSAYY--RGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus        10 l~l~Dt~G~~~~~~--------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.++||||......        ....++  +..+.++++++..+...+..+..    +......+.|+++++||.|....
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccc
Confidence            57999999643211        112222  67899999998853211111110    11122346899999999997543


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccC
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      ... ......+.+..|......++.
T Consensus       290 ~~~-~~~~~~~~~~~g~~l~p~~~~  313 (369)
T 3ec1_A          290 TKL-EKADSLYANQLGELLSPPSKR  313 (369)
T ss_dssp             EEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred             ccH-HHHHHHHHHhcCCccCCCCch
Confidence            322 223334445555544444443

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=89.67  E-value=0.72  Score=32.53  Aligned_cols=64  Identities=13%  Similarity=0.003  Sum_probs=43.0

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCC
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSD   75 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D   75 (163)
                      .+.+.|+|+++....  .....+..+|.+|++... +..++..+......+... + -..+.+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~-~-~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDL-G-IKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHH-T-CSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHc-C-CccEEEEEeCCC
Confidence            456889999876533  445567889999999987 445565555554433333 2 245778999987

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=89.42  E-value=2.8  Score=30.03  Aligned_cols=87  Identities=10%  Similarity=0.051  Sum_probs=51.5

Q ss_pred             EEEEEEeCCChhhHhhhhh-hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeE-EEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRAITS-AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVI-MMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi-ivv~nK~Dl~~~~~~~~   84 (163)
                      +.+.|+|++|......+.. .....+|.+|++... +..++..+..++..+..... .+.++ -+|.|+.+..    ...
T Consensus       116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~  190 (269)
T 1cp2_A          116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred             CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence            5689999988543222211 122469999999876 44556666555555544332 23554 6789998631    234


Q ss_pred             HHHHHHHHHcCCcEE
Q 031238           85 EDGHSLAEKEGLSFL   99 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (163)
                      +....+.+..+.+++
T Consensus       191 ~~~~~l~~~~~~~v~  205 (269)
T 1cp2_A          191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCccc
Confidence            455566666776655

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.51  E-value=1.4  Score=32.17  Aligned_cols=66  Identities=11%  Similarity=0.113  Sum_probs=39.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH---HHHHHHhhcCCCCeE-EEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR---WLRELRDHADSNIVI-MMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~pi-ivv~nK~Dl   76 (163)
                      +.+.|+|+|+......  ...+..+|.+|++...+. .++..+..   ++..+....+.+.++ -+|.|+.|.
T Consensus       155 yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~  224 (298)
T 2oze_A          155 YDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT  224 (298)
T ss_dssp             CSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred             CCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence            5688999988653322  233456999999997642 33444433   333333222335664 489999985

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=85.22  E-value=5.1  Score=29.04  Aligned_cols=88  Identities=13%  Similarity=0.066  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCChhhHhhhh-hhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCe-EEEEeeCCCCcccccCC
Q 031238            7 TVKAQIWDTAGQERYRAIT-SAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV-IMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iivv~nK~Dl~~~~~~~   83 (163)
                      .+.+.|+|++|......+. ......+|.+|++... +..++..+..++..+..... .+.+ +-+|.|+.+..    ..
T Consensus       118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~  192 (289)
T 2afh_E          118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----RE  192 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----TH
T ss_pred             CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hH
Confidence            3678999998753222111 1223579999999875 44556555555555444322 2455 45788998631    12


Q ss_pred             HHHHHHHHHHcCCcEE
Q 031238           84 EEDGHSLAEKEGLSFL   99 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~   99 (163)
                      .+....+.+..+.+++
T Consensus       193 ~~~~~~l~~~~g~~~l  208 (289)
T 2afh_E          193 DELIIALANKLGTQMI  208 (289)
T ss_dssp             HHHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHHcCcccc
Confidence            3344555566676654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=84.39  E-value=0.086  Score=40.59  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=45.1

Q ss_pred             EEEEeCCChhhHhh----h----hhhh--hcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238           10 AQIWDTAGQERYRA----I----TSAY--YRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus        10 l~l~Dt~G~~~~~~----~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      +.++||||......    +    ...+  .+..+.++++++......+..+..    +......+.|+++++||.|....
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccc
Confidence            57999999743221    1    1111  356788999998743211111100    11122346899999999997543


Q ss_pred             ccCCHHHHHHHHHHcCCcEE
Q 031238           80 RAVTEEDGHSLAEKEGLSFL   99 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~   99 (163)
                      ... ......+.+..|..+.
T Consensus       289 ~~~-~~~~~~~~~~~g~~l~  307 (368)
T 3h2y_A          289 TKL-EKADELYKNHAGDLLS  307 (368)
T ss_dssp             EEH-HHHHHHHHHHBTTTBC
T ss_pred             ccH-HHHHHHHHHHhCCccC
Confidence            322 3333444444454333

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=83.43  E-value=1.6  Score=31.97  Aligned_cols=33  Identities=21%  Similarity=0.084  Sum_probs=25.5

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT   42 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   42 (163)
                      +.+.|+|+++..  .......+..+|.+|++...+
T Consensus       104 yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~  136 (286)
T 2xj4_A          104 CDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS  136 (286)
T ss_dssp             CSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred             CCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence            567899999875  334456788899999999875

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=82.49  E-value=2.6  Score=30.72  Aligned_cols=64  Identities=11%  Similarity=0.052  Sum_probs=40.0

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl   76 (163)
                      +.+.|+|+|+...... .......+|.+|+|..... .+...+......+...   +.+++ +|.|+.|.
T Consensus       192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~~---~~~~~GvVlN~~~~  256 (271)
T 3bfv_A          192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEAT---GAKLLGVVLNRMPK  256 (271)
T ss_dssp             CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHTT---TCEEEEEEEEEECC
T ss_pred             CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEeCCcC
Confidence            4578999998643211 1234457899999998753 2344454444444432   45655 89999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-37
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-34
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-34
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-32
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-32
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-31
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-30
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-29
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-28
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-27
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-27
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-27
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-27
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-25
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-24
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-23
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-21
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-21
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-21
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-21
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-20
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-19
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-18
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-17
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-17
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-17
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-17
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-17
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-16
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	7e-15
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-14
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-14
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-14
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-13
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-13
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-12
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-11
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-11
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-11
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-09
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-06
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-06
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-05

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 6e-37
 Identities = 94/130 (72%), Positives = 112/130 (86%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+GKT+KAQIWDTAGQERYR ITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDH
Sbjct: 46  IQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH 105

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           ADSNIVIM+ GNKSDL HLRAV  ++  + AEK  LSF+ETSAL++TNVE+AF+ ILTEI
Sbjct: 106 ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

Query: 121 YHIISKKALA 130
           Y I+S+K +A
Sbjct: 166 YRIVSQKQIA 175

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 3e-34
 Identities = 62/126 (49%), Positives = 88/126 (69%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +H
Sbjct: 48  IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A +++  M+ GNK D+N  R V++E G  LA   G+ F+ETSA    NVE AF T+  +I
Sbjct: 108 ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

Query: 121 YHIISK 126
              + K
Sbjct: 168 KAKMDK 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 9e-34
 Identities = 58/121 (47%), Positives = 81/121 (66%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G  VK Q+WDTAGQER+R++T AYYR A   LL+YD+T + +FDN+  WL E+ ++
Sbjct: 49  LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEY 108

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A  ++ +M+ GNK D  H R V  EDG  LA++ GL F+ETSA    NV+ AF  I  E+
Sbjct: 109 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

Query: 121 Y 121
            
Sbjct: 169 K 169

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (279), Expect = 1e-32
 Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + GK VK QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  +TF N+ +W + + +H
Sbjct: 44  VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH 103

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A+    +++ GNKSD+   R VT + G +LA++ G+ F+E+SA    NV + F T+   I
Sbjct: 104 ANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

Query: 121 Y 121
            
Sbjct: 163 Q 163

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 1e-32
 Identities = 62/121 (51%), Positives = 83/121 (68%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V G+ +K QIWDTAGQER+RA+T +YYRGA GAL+VYDIT+R T++++  WL + R+ 
Sbjct: 46  IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL 105

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            + N VI++ GNK+DL   R VT E+    AE+ GL FLE SA    NVE AF     +I
Sbjct: 106 TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

Query: 121 Y 121
           Y
Sbjct: 166 Y 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 8e-31
 Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 4/147 (2%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +
Sbjct: 48  VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A S ++ ++ GNK DL   R V  +     A+   + FLETSAL++TNVE AF T+  +I
Sbjct: 108 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

Query: 121 YHIISKKALAA----QQASANTALPGQ 143
              +S++ L      ++   N  L GQ
Sbjct: 168 KESMSQQNLNETTQKKEDKGNVNLKGQ 194

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 5e-30
 Identities = 69/126 (54%), Positives = 91/126 (72%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R H
Sbjct: 45  VNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH 104

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           + SN+VIM+ GNKSDL   R V  E+G + A + GL F+ETSA  A NVE+AF     EI
Sbjct: 105 SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

Query: 121 YHIISK 126
           Y  I +
Sbjct: 165 YRKIQQ 170

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (260), Expect = 1e-29
 Identities = 51/121 (42%), Positives = 77/121 (63%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +    K +K QIWDTAGQERYR IT+AYYRGA+G +L+YDIT  ++F+ V  W  +++ +
Sbjct: 47  IYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 106

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           +  N  +++ GNK D+   R V+ E G  LA+  G  F E SA +  NV++ F+ ++  I
Sbjct: 107 SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

Query: 121 Y 121
            
Sbjct: 167 C 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-28
 Identities = 50/120 (41%), Positives = 77/120 (64%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + G+ VK QIWDTAGQER+R+IT +YYR A   +L YDIT  ++F  +  WLRE+  +
Sbjct: 47  VEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 106

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A + ++ ++ GNK DL   R V+++     +E + + +LETSA E+ NVEK F  +   +
Sbjct: 107 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 3e-27
 Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 1/126 (0%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD 62
            +   V  Q+WDTAGQER+R++T+A++R A+G LL++D+T +Q+F NV  W+ +L+ +A 
Sbjct: 59  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118

Query: 63  SN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
                I++ GNK+DL   R V E     LA+K G+ + ETSA    NVEKA +T+L  I 
Sbjct: 119 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

Query: 122 HIISKK 127
             + + 
Sbjct: 179 KRMEQC 184

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 4e-27
 Identities = 45/120 (37%), Positives = 78/120 (65%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           M +E +T++ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R  
Sbjct: 42  MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE 101

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             S+++IM+ GNK+DL   R V+ E+G   A++  + F+ETSA    NV++ F+ +   +
Sbjct: 102 RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (242), Expect = 5e-27
 Identities = 65/127 (51%), Positives = 84/127 (66%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  
Sbjct: 47  INVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML 106

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A  NIVI++ GNK DL+  R VT  +    A++  L FLETSAL   NVE+AF     +I
Sbjct: 107 ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

Query: 121 YHIISKK 127
            + I   
Sbjct: 167 LNKIESG 173

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 6e-27
 Identities = 47/122 (38%), Positives = 67/122 (54%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G   K  IWDTAGQER+R +T +YYRGA G +LVYD+T+R TF  +  WL EL  +
Sbjct: 49  ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY 108

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              N ++ M          R V   +G   A K  + F+E SA     V+ AF+ ++ +I
Sbjct: 109 CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

Query: 121 YH 122
             
Sbjct: 169 IQ 170

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 6e-25
 Identities = 53/121 (43%), Positives = 78/121 (64%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + ++  TVK +IWDTAGQERY ++   YYRGA  A++VYDIT  ++F     W++EL+  
Sbjct: 48  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ 107

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           A  NIVI ++GNK+DL + RAV  ++  S A+   L F+ETSA  + NV + F  I  ++
Sbjct: 108 ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

Query: 121 Y 121
            
Sbjct: 168 P 168

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 2e-24
 Identities = 47/121 (38%), Positives = 67/121 (55%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + + GK V   IWDTAGQER+ A+   YYR + GA+LVYDIT   +F  V  W++ELR  
Sbjct: 45  LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM 104

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             + I + + GNK DL   R V+ ++  S AE  G     TSA +   +E+ F  +   +
Sbjct: 105 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

Query: 121 Y 121
            
Sbjct: 165 I 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 5e-23
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD- 59
           + V+      +I DTAG E++ ++   Y +   G +LVY +  +Q+F ++     ++   
Sbjct: 44  IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV 103

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
                + +++ GNK DL   R V+  +G +LAE+ G  F+ETSA   T V++ F  I+ +
Sbjct: 104 KRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

Query: 120 IYH 122
           + +
Sbjct: 164 MNY 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 83.1 bits (204), Expect = 2e-21
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMM 69
            I DTAGQE Y AI   Y+R   G L V+ IT+ ++F     +  + LR   D N+  ++
Sbjct: 55  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114

Query: 70  AGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 121
            GNKSDL   R V+ E+  + A++  ++++ETSA    NV+K F  ++ EI 
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 4e-21
 Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+G  V  QIWDTAGQER+R++ + +YRG+   LL + +   Q+F N+  W +E   +
Sbjct: 48  LEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYY 107

Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQT 115
           AD     +   ++ GNK D++  R V+ E+  +     G   + ETSA +ATNV  AF+ 
Sbjct: 108 ADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 166

Query: 116 ILTEI 120
            +  +
Sbjct: 167 AVRRV 171

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+GK V   +WDTAGQE Y  +    Y     +L+ + +    +F+NV         H
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEE------------DGHSLAEKEG-LSFLETSALEAT 107
              N  I++ G K DL   +   E+             G ++A++ G + +LE SAL   
Sbjct: 106 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 165

Query: 108 NVEKAFQTILTEIYH 122
            ++  F   +  +  
Sbjct: 166 GLKTVFDEAIRAVLC 180

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 6e-21
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 4/119 (3%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSN 64
           K VK  +WD  GQ++ R +   YY G  G + V D   R   D   + L  +  D    +
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113

Query: 65  IVIMMAGNKSDLNHLR---AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
            +I++  NK DL        + E+ G +           + A     + +    + +  
Sbjct: 114 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.7 bits (195), Expect = 5e-20
 Identities = 52/110 (47%), Positives = 68/110 (61%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 70
            IWDTAG ER+RA+   YYRG+  A++VYDITK +TF  +  W+RELR H   +IV+ +A
Sbjct: 56  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 115

Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           GNK DL  +R V E D    A+     F+ETSA  A N+ + F  I   I
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.9 bits (193), Expect = 8e-20
 Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (2%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 70
           +IWDTAGQER+ ++   YYR A  AL+VYD+TK Q+F     W++EL + A  +I+I + 
Sbjct: 55  EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114

Query: 71  GNKSDLNH---LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           GNK D+      R V  E+G  LAE++GL F ETSA    NV   F  I  +I
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 2e-19
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V GK     ++DTAGQE Y  +    Y      L+ + +    +F NV          
Sbjct: 50  VTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 109

Query: 61  ADSNIVIMMAGNKSDLNHLRA------------VTEEDGHSLAEKEG-LSFLETSALEAT 107
              N+  ++ G + DL                 +  E G  LA++ G   ++E SAL   
Sbjct: 110 YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQK 169

Query: 108 NVEKAFQTILTEIYH 122
            ++  F   +  I  
Sbjct: 170 GLKTVFDEAIIAILT 184

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 3e-19
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +++ G+     ++DTAGQE Y  +    Y      L+ + +    +F+NV         H
Sbjct: 44  VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 103

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTE------------EDGHSLAEK-EGLSFLETSALEAT 107
                  ++ G + DL    +  E            E    LA   + + ++E SAL   
Sbjct: 104 HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 163

Query: 108 NVEKAFQTILTEIYHIISKK 127
            ++  F   +         K
Sbjct: 164 GLKNVFDEAILAALEPPEPK 183

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-18
 Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++  
Sbjct: 44  VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV 103

Query: 61  AD-SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
            D  ++ +++ GNK DL   R V       LA   G+ ++ETSA     VE AF T++ E
Sbjct: 104 KDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

Query: 120 IY 121
           I 
Sbjct: 163 IR 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             +  K +K  +WD  GQ   R     YY      + V D T +       + L  +   
Sbjct: 54  ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 113

Query: 61  AD-SNIVIMMAGNKSDLNH---LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            +  +  +++  NK D         V++E      +    S + +SA++   + +    +
Sbjct: 114 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 173

Query: 117 LTEI 120
           +  I
Sbjct: 174 IDVI 177

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-17
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR-ELRDHADSN 64
           +    +I DTAG E++ A+   Y +   G  LVY IT + TF+++       LR     +
Sbjct: 49  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108

Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEIY 121
           + +++ GNK DL   R V +E G +LA +    +FLE+SA    NV + F  ++ +I 
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 41/124 (33%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
            +++ +  +  I DTAGQE + A+   Y R   G LLV+ +T R +F+ + ++ R+ LR 
Sbjct: 46  CVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRV 105

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
                  +++ GNK+DL+H R VT+E+G  LA +  ++++E SA    NV++AF  ++  
Sbjct: 106 KDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV 165

Query: 120 IYHI 123
           I   
Sbjct: 166 IRKF 169

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
             VE K +   +WD  GQ++ R +   Y++   G + V D   R+  +     L   L +
Sbjct: 37  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96

Query: 60  HADSNIVIMMAGNKS---DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
               + V+++  NK    +  +   +T++ G             T A     + +    +
Sbjct: 97  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156

Query: 117 LTEI 120
             ++
Sbjct: 157 SNQL 160

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR-ELRD 59
             ++ +     + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR 
Sbjct: 45  TEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV 104

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILT 118
               +  +++  NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++ 
Sbjct: 105 KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 164

Query: 119 EIY 121
            I 
Sbjct: 165 VIR 167

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 5/121 (4%)

Query: 1   MIVEGKTVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRD 59
           + ++G+ +K Q+WDTAGQER+ +++   YYR     + VYD+T   +F ++  W+ E + 
Sbjct: 44  VDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 103

Query: 60  HADSN-IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEAT---NVEKAFQT 115
           H  +N I  ++ GNK DL     V  +     A+   +   ETSA       +VE  F T
Sbjct: 104 HLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 163

Query: 116 I 116
           +
Sbjct: 164 L 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 9e-17
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRD 59
             V+G   +  I DTAGQE + A+   Y R   G LLV+ I  RQ+F+ V +   + LR 
Sbjct: 47  CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV 106

Query: 60  HADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
               +  +++ GNK+DL   R V   +  +      +++ E SA    NV++AF+ ++  
Sbjct: 107 KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 166

Query: 120 IY 121
           + 
Sbjct: 167 VR 168

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (172), Expect = 1e-16
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V  + V+  +WDTAGQE + AIT AYYRGA   +LV+  T R++F+ +  W  ++   
Sbjct: 44  IQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE 103

Query: 61  ADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
              +I   +  NK DL     +  E+   LA++  L F  TS  E  NV + F+ +  + 
Sbjct: 104 VG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

Query: 121 Y 121
            
Sbjct: 163 L 163

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 7e-15
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V+GK V+  +WDTAG E Y  +    Y      L+ + I    + +N+         H
Sbjct: 43  IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 102

Query: 61  ADSNIVIMMAGNKSDLNHLRAV------------TEEDGHSLAEKEG-LSFLETSALEAT 107
              N+ I++ GNK DL +                  E+G  +A + G   ++E SA    
Sbjct: 103 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 162

Query: 108 NVEKAFQTILTEI 120
            V + F+      
Sbjct: 163 GVREVFEMATRAA 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-14
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             +     +  +WD  GQE  R+  + YY      ++V D T R+        L ++  H
Sbjct: 52  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 111

Query: 61  ADSNIV-IMMAGNKSDLNH---LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
            D     +++  NK D+     +  +++    +  +          AL    + +  + +
Sbjct: 112 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 171

Query: 117 LTEI 120
           ++ +
Sbjct: 172 MSRL 175

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 6/120 (5%)

Query: 9   KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN---- 64
             Q+WDTAGQER++++  A+YRGA   +LVYD+T   +F+N+  W  E   HA+ N    
Sbjct: 53  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112

Query: 65  IVIMMAGNKSDLNHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTEIYH 122
              ++ GNK D    + +  E       K    +    TSA  A NV+ AF+ I      
Sbjct: 113 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             ++ + ++  +WDT+G   Y  +    Y  +   L+ +DI++ +T D+VL+  +     
Sbjct: 43  FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 102

Query: 61  ADSNIVIMMAGNKSDL------------NHLRAVTEEDGHSLAEKEG-LSFLETSALEAT 107
              N  +++ G KSDL            +    V+ + G ++A++ G  +++E SAL++ 
Sbjct: 103 FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 162

Query: 108 N-VEKAFQTILTEI 120
           N V   F       
Sbjct: 163 NSVRDIFHVATLAC 176

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.1 bits (157), Expect = 2e-14
 Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 4/125 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           ++V+ + V  QIWDTAGQER++++  A+YRGA   +LV+D+T   TF  +  W  E    
Sbjct: 44  VMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ 103

Query: 61  ADS----NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
           A      N   ++ GNK DL + +  T+        K  + + ETSA EA NVE+AFQTI
Sbjct: 104 ASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 163

Query: 117 LTEIY 121
                
Sbjct: 164 ARNAL 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-14
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           +  +      QI DT G  ++ A+           +LVY IT RQ+ + +     ++ + 
Sbjct: 43  ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI 102

Query: 61  AD--SNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILT 118
                +I IM+ GNK D +  R V   +  +LA     +F+ETSA    NV++ FQ +L 
Sbjct: 103 KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

Query: 119 EI 120
             
Sbjct: 163 LE 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 64.2 bits (155), Expect = 4e-14
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SN 64
           +  K  +WD  GQ + R    +Y+      + V D   R+ F+   + L EL +    S 
Sbjct: 58  QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC 117

Query: 65  IVIMMAGNKSDL---NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           + +++  NK DL        + E                 SAL    V+     +   +
Sbjct: 118 VPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 3e-13
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 26  SAYYRGAVGALLVYDITKRQTFDNVLRWLR-ELRDHADSNIVIMMAGNKSDLNHLRAVTE 84
             + R   G +LVYDIT R +F+ VL             N+ +++ GNK+DL+H R V+ 
Sbjct: 67  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126

Query: 85  EDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEIY 121
           E+G  LA +   +F E SA     N+ + F  +  E+ 
Sbjct: 127 EEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 7e-13
 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
           + V G+    Q+ DTAGQ+ Y      Y     G +LVY +T  ++F+ +     +L D 
Sbjct: 45  ITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM 104

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE 119
                I IM+ GNK DL+  R ++ E+G +LAE    +FLE+SA E       F+ I+ E
Sbjct: 105 VGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

Query: 120 I 120
            
Sbjct: 165 A 165

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 11  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMA 70
            +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L    + NI I++ 
Sbjct: 55  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 113

Query: 71  GNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
           GNK D+   +   +        K+ L + + SA    N EK F  +  ++
Sbjct: 114 GNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 28  YYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSNIVIMMAGNKSD--LNHLRAV 82
           +   A   + V+ +    +F  V R    L  LR      + + + G +     +  R V
Sbjct: 67  FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126

Query: 83  TEEDGHSLA-EKEGLSFLETSALEATNVEKAFQTILTEIYHIISKKAL 129
            +    +L  + +  S+ ET A    NV++ FQ +  ++  +  ++ L
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 6e-11
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 6   KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSN 64
           +  K  IWD  GQ+  R+    Y+    G + V D   RQ   +  R L+ L  +   + 
Sbjct: 44  RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 103

Query: 65  IVIMMAGNKSDLNHLRAVTE---EDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 120
             +++  NK DL    +                       SA+   ++      +L +I
Sbjct: 104 ATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-11
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             +    V  ++WD  GQ R+R++   Y RG    + + D   ++  +     L  L D 
Sbjct: 40  RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK 99

Query: 61  AD-SNIVIMMAGNKSDL---NHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
                I +++ GNK DL      + + E+   S  +   +     S  E  N++   Q +
Sbjct: 100 PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 159

Query: 117 LTEI 120
           +   
Sbjct: 160 IQHS 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-11
 Identities = 22/75 (29%), Positives = 38/75 (50%)

Query: 53  WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA 112
            ++  R     ++ I++ GNKSDL   R V+ ++G + A      F+ETSA    NV+  
Sbjct: 94  RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 153

Query: 113 FQTILTEIYHIISKK 127
           F+ ++ +I      K
Sbjct: 154 FEGVVRQIRLRRDSK 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-10
 Identities = 22/68 (32%), Positives = 37/68 (54%)

Query: 53  WLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA 112
            ++  R     +I I++ GNKSDL   R V+  +G + A      F+ETSA    NV++ 
Sbjct: 100 RIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 159

Query: 113 FQTILTEI 120
           F+ I+ ++
Sbjct: 160 FEGIVRQV 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 5e-09
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             V  K +K Q+WD  G    R     YY      + V D   R         L  + + 
Sbjct: 42  ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 101

Query: 61  -ADSNIVIMMAGNKSDLNHLRAVTE---EDGHSLAEKEGLSFLETSALEATNVEKAFQTI 116
                 ++++  NK D+      +E     G    +       +TSA + T +++A + +
Sbjct: 102 EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 161

Query: 117 LTEI 120
           +  +
Sbjct: 162 VETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             +    +K   +D  G  + R +   Y+    G + + D    + FD     L  L + 
Sbjct: 37  EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI 96

Query: 61  ADS-NIVIMMAGNKSDLNHLRAVTE----------EDGHSLAEKEGLSFLETSALEATNV 109
           A+  ++  ++ GNK D  +  +  E               +  +  +     S +     
Sbjct: 97  AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY 156

Query: 110 EKAFQTI 116
            +AFQ +
Sbjct: 157 LEAFQWL 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 41/166 (24%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT-----------KRQTFDN 49
              + ++V  ++ D  GQ   R      +      + +  ++           + +  ++
Sbjct: 38  YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES 97

Query: 50  VLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-------------- 95
              +   +      N  +++  NK DL   + +         E +G              
Sbjct: 98  KALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILK 157

Query: 96  ------------LSFLETSALEATNVEKAFQTILTEIYHIISKKAL 129
                       +    T A +  N+   F      +   I +  L
Sbjct: 158 MFVDLNPDSDKIIYSHFTCATDTENIRFVFAA----VKDTILQLNL 199

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 25/165 (15%), Positives = 43/165 (26%), Gaps = 42/165 (25%)

Query: 3   VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE------ 56
            E K V  ++ D  GQ   R      +      L +   ++        R          
Sbjct: 39  FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 98

Query: 57  -----LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL------------ 99
                + +   SN+ I++  NK+DL   +           E EG                
Sbjct: 99  IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158

Query: 100 ---------------ETSALEATNVEKAFQTILTEIYHIISKKAL 129
                           T+A+   N+   F+ +       I    L
Sbjct: 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK----DTILHDNL 199

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 16/136 (11%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH 60
             +    +    +D  G  + R +   Y     G + + D    +        L  L   
Sbjct: 50  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 109

Query: 61  A-DSNIVIMMAGNKSDLNH------------LRAVTEEDGHSLAEK---EGLSFLETSAL 104
              +N+ I++ GNK D               L   T   G    ++     L     S L
Sbjct: 110 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 169

Query: 105 EATNVEKAFQTILTEI 120
           +     + F+ +   I
Sbjct: 170 KRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 37/157 (23%)

Query: 1   MIVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV---------- 50
                K +  +++D  GQ   R      + G    +    ++                  
Sbjct: 35  THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES 94

Query: 51  -LRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFL---------- 99
              +     +   ++  I++  NK DL   +           E  G +            
Sbjct: 95  MKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ 154

Query: 100 ----------------ETSALEATNVEKAFQTILTEI 120
                            T A +  NV+  F  +   I
Sbjct: 155 FEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.91
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.86
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.86
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.79
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.68
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.63
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.62
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.56
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.52
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.51
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.48
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.48
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.46
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.41
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.4
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.38
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.36
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.33
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.27
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.23
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.22
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.21
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.09
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.97
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.96
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.81
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.79
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.77
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.58
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.54
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.52
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.33
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.21
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.95
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.9
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.77
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.48
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.1
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.19
d2qy9a2	211	GTPase domain of the signal recognition particle r	93.47
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.27
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	91.92
d1vmaa2	213	GTPase domain of the signal recognition particle r	91.52
d1okkd2	207	GTPase domain of the signal recognition particle r	89.12
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.57
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	84.26
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	80.46
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	80.31

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-29  Score=172.19  Aligned_cols=124  Identities=25%  Similarity=0.368  Sum_probs=107.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... ..+|+++||||+|+...+
T Consensus        42 ~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  121 (168)
T d2gjsa1          42 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR  121 (168)
T ss_dssp             EETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGC
T ss_pred             eccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhc
Confidence            4689999999999999999999999999999999999999999999999999999877654 568999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +++..+++.+++.++++|+++||++|.|++++|+.|++.+..++.
T Consensus       122 ~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~  166 (168)
T d2gjsa1         122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD  166 (168)
T ss_dssp             CSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999988866543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-27  Score=163.26  Aligned_cols=121  Identities=32%  Similarity=0.560  Sum_probs=112.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|.+.+..++..+++++|++++|||++++.||+.+..|+..+.+... .+.|++++|||+|+...+
T Consensus        46 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          46 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred             ccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhc
Confidence            4688999999999999999999999999999999999999999999999999999877654 579999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~  122 (163)
                      .++.++++++++.++++|+++||+++. ||+++|+.|++.+.+
T Consensus       126 ~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         126 KVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             eeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            899999999999999999999999886 999999999988765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=6.8e-27  Score=161.91  Aligned_cols=121  Identities=42%  Similarity=0.766  Sum_probs=111.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ..++..+.+++|||+|++++..++..+++++|++|+|||+++++++..+..|+..+........|+++++||+|+.+.+.
T Consensus        48 ~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~  127 (169)
T d3raba_          48 YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV  127 (169)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCC
T ss_pred             EeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccc
Confidence            35678889999999999999999999999999999999999999999999988888776666799999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..++++.+++..+++|+++||++|.|++++|++|++.+.+
T Consensus       128 v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         128 VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             SCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             cchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=161.02  Aligned_cols=121  Identities=41%  Similarity=0.720  Sum_probs=112.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..++++++++++|||++++.++..+..|+..+........|+++||||+|+.+.++
T Consensus        48 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~  127 (171)
T d2ew1a1          48 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE  127 (171)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccc
Confidence            46788999999999999999999999999999999999999999999999999988777666799999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +..++++.+++..+++++++||++|.||+++|..|++.++.
T Consensus       128 v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         128 VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999988765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.3e-27  Score=163.10  Aligned_cols=121  Identities=30%  Similarity=0.541  Sum_probs=112.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|++++..++..+++++|++|+|||++++.||+.+..|+..+.+... .++|+++||||+|+...+
T Consensus        48 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  127 (173)
T d2fn4a1          48 SVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR  127 (173)
T ss_dssp             EETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             ccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhcc
Confidence            4688999999999999999999999999999999999999999999999999998876543 578999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..++++.+++.++++|+++||++|.||+++|+.|++.+.+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         128 QVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999998755

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.95  E-value=5.9e-27  Score=162.21  Aligned_cols=120  Identities=34%  Similarity=0.581  Sum_probs=109.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+.+... .++|+++||||+|+.+.+
T Consensus        46 ~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~  125 (168)
T d1u8za_          46 VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             ccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccc
Confidence            4688999999999999999999999999999999999999999999999999999987654 579999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++++.+++.++++|+++||++|.|++++|++|++.+.
T Consensus       126 ~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         126 QVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999998774

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.1e-27  Score=161.40  Aligned_cols=120  Identities=34%  Similarity=0.492  Sum_probs=111.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|.+.+..++..+++++|++|+|||++++++|+.+..|+..+.+... .++|+++||||+|+...+
T Consensus        46 ~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r  125 (167)
T d1xtqa1          46 TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER  125 (167)
T ss_dssp             EETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGC
T ss_pred             ecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccccc
Confidence            5789999999999999999999999999999999999999999999999999999877654 579999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .++.++++.+++.++++|+++||++|.|++++|+.|++.+.
T Consensus       126 ~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         126 VISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999987764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-27  Score=162.14  Aligned_cols=121  Identities=39%  Similarity=0.670  Sum_probs=105.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ..++..+.+.+||++|++.+..++..+++++|++|+|||+++++||+.+..|+..+........|+++||||+|+.+.+.
T Consensus        46 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~  125 (167)
T d1z08a1          46 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH  125 (167)
T ss_dssp             ESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC
T ss_pred             ccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccc
Confidence            34677899999999999999999999999999999999999999999999999888776656789999999999988889


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ++.++++.+++.++++|+++||++|.||+++|++|++.+++
T Consensus       126 v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         126 VSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             SCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999988763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.6e-27  Score=161.19  Aligned_cols=119  Identities=34%  Similarity=0.572  Sum_probs=111.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ..++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+.+..+ ++|+++||||+|+.+.+.
T Consensus        45 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~  123 (164)
T d1z2aa1          45 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSC  123 (164)
T ss_dssp             EETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCS
T ss_pred             eecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCC-CceEEEeeccCCccccee
Confidence            3577889999999999999999999999999999999999999999999999999987766 699999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..++++.+++.++++|+++||++|.|++++|+.|++.++
T Consensus       124 v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         124 IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             SCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             eeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-26  Score=156.77  Aligned_cols=119  Identities=51%  Similarity=0.855  Sum_probs=111.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++|+|||+++.++++.+..|+..+........|++++|||.|+...+.
T Consensus        47 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~  126 (166)
T d1z0fa1          47 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD  126 (166)
T ss_dssp             EETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcc
Confidence            46889999999999999999999999999999999999999999999999999998877667899999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +..++++.+++..+++|+++||++|.||+++|+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         127 VTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            888999999999999999999999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-26  Score=157.17  Aligned_cols=118  Identities=37%  Similarity=0.732  Sum_probs=110.6

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+||++|++.+...+..+++++|++++|||++++.+++.+..|+..+......++|+++||||.|+.+.+.+
T Consensus        44 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~  123 (164)
T d1yzqa1          44 LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV  123 (164)
T ss_dssp             CSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS
T ss_pred             cCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhh
Confidence            46788999999999999999999999999999999999999999999999999988877668999999999999888888


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..+++..+++.++++|+++||++|.||+++|++|++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         124 SIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             CHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            89999999999999999999999999999999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-26  Score=157.34  Aligned_cols=126  Identities=74%  Similarity=1.136  Sum_probs=114.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+||++|++++..++..+++++|++|+|||++++.||..+..|+..+......++|+++||||+|+.+.+.
T Consensus        47 ~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~  126 (175)
T d2f9la1          47 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA  126 (175)
T ss_dssp             EETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             EECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccccccc
Confidence            46889999999999999999999999999999999999999999999999999999888777799999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      ...+....+....+.+|+++||++|.|++++|+.+++.+.+...++
T Consensus       127 ~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~  172 (175)
T d2f9la1         127 VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK  172 (175)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhc
Confidence            7778888888888999999999999999999999999987655443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-25  Score=158.19  Aligned_cols=126  Identities=47%  Similarity=0.794  Sum_probs=114.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++|+|||+++++++..+..|+..+.+....++|+++|+||.|+.+...
T Consensus        49 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~  128 (194)
T d2bcgy1          49 ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV  128 (194)
T ss_dssp             EETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC
T ss_pred             EEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccc
Confidence            46788999999999999999999999999999999999999999999999888888766666899999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                      +..++...+++..++.|+++||++|.|++++|+.+++.+......+
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         129 VEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ  174 (194)
T ss_dssp             SCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCCHH
T ss_pred             hhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhhhc
Confidence            8899999999999999999999999999999999999887655443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.1e-25  Score=156.34  Aligned_cols=123  Identities=50%  Similarity=0.855  Sum_probs=99.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+......+.|+++|+||.|+...+.
T Consensus        49 ~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~  128 (173)
T d2fu5c1          49 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQ  128 (173)
T ss_dssp             EETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCC
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcc
Confidence            46788999999999999999999999999999999999999999999999999998776666899999999999987777


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ...+++..++...+++|+++||++|.|++++|++|++.+..+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         129 VSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             SCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            8888888899999999999999999999999999999886544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-25  Score=155.71  Aligned_cols=123  Identities=56%  Similarity=0.930  Sum_probs=113.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ..++..+.+.+||++|++.+..++..+++++|++|+|||++++.+|+.+..|+..+......++|+++|+||+|+...+.
T Consensus        46 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  125 (173)
T d2a5ja1          46 NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD  125 (173)
T ss_dssp             EETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC
T ss_pred             eeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhh
Confidence            35678899999999999999999999999999999999999999999999999998887667899999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..+++..+++..+++|+++||++|.||+++|..+++.+++..
T Consensus       126 ~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         126 VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI  168 (173)
T ss_dssp             SCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999887543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.8e-26  Score=158.92  Aligned_cols=119  Identities=45%  Similarity=0.726  Sum_probs=108.8

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +..+.+.+|||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+..... ...|+++|+||.|+.+.+.+.
T Consensus        61 ~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~  140 (186)
T d2f7sa1          61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN  140 (186)
T ss_dssp             EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred             cceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcch
Confidence            4457899999999999999999999999999999999999999999999987765543 568999999999998888999


Q ss_pred             HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+++.+++++++++|+++||++|.|++++|+++++.+.++
T Consensus       141 ~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         141 ERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             HHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.7e-26  Score=156.83  Aligned_cols=123  Identities=53%  Similarity=0.801  Sum_probs=113.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      ..++..+.+.+||++|++++..++..+++++|++|+|||+++++++..+..|+..+......++|+++|+||+|+....+
T Consensus        48 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~  127 (174)
T d2bmea1          48 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE  127 (174)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred             EecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhc
Confidence            35778899999999999999999999999999999999999999999999999998877666899999999999988788


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      +..+.+..+++..+++|+++||++|.|++++|+++++.++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~  170 (174)
T d2bmea1         128 VTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI  170 (174)
T ss_dssp             SCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.9e-26  Score=159.04  Aligned_cols=120  Identities=25%  Similarity=0.393  Sum_probs=104.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++++|||+++++||+++..|+....+....+.|+++||||+|+.+   
T Consensus        51 ~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~  130 (185)
T d2atxa1          51 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK  130 (185)
T ss_dssp             ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred             eeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchh
Confidence            35678899999999999999999999999999999999999999999886555555444445799999999999853   


Q ss_pred             ---------cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           79 ---------LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                               .+.++.++++++++.++ +.|++|||++|.||+++|+.+++.++
T Consensus       131 ~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             HHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence                     36788899999999887 69999999999999999999998774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-26  Score=157.41  Aligned_cols=120  Identities=28%  Similarity=0.477  Sum_probs=104.7

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .++++.+.+.+||++|++.+..++..+++++|++|+|||+++++||+++..|+..+......++|+++||||+|+..   
T Consensus        44 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~  123 (177)
T d1kmqa_          44 EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH  123 (177)
T ss_dssp             EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHH
T ss_pred             cccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhh
Confidence            46788999999999999999999999999999999999999999999987665555444445799999999999853   


Q ss_pred             ---------cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           79 ---------LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                               .+.+..++++.+++.++ .+|+++||++|.||+++|+.+++.++
T Consensus       124 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence                     24577889999999988 48999999999999999999998775

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-26  Score=158.25  Aligned_cols=119  Identities=29%  Similarity=0.379  Sum_probs=108.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD--SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~   79 (163)
                      .+++..+.+.+||++|.+.+...+..+++++|++++|||++++++++.+..|+..+.....  .++|+++||||+|+...
T Consensus        44 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  123 (171)
T d2erxa1          44 SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  123 (171)
T ss_dssp             EETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             eeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc
Confidence            4688899999999999999999999999999999999999999999999999988876543  57899999999999888


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+..++++++++.++++|+++||++|.||+++|+.|++.+
T Consensus       124 ~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         124 REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999988654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=155.98  Aligned_cols=121  Identities=33%  Similarity=0.632  Sum_probs=107.6

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|.+.+...+..+++.+|++++|||++++.||+.+..|+..+..... ...|+|+||||+|+...+
T Consensus        47 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~  126 (171)
T d2erya1          47 VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR  126 (171)
T ss_dssp             EETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC
T ss_pred             eecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhc
Confidence            4688999999999999999999999999999999999999999999999999988876644 578999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      .+..+++..+++.++++|+++||++|.||+++|+.|++.+.+
T Consensus       127 ~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         127 QVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             SSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999988743

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=158.43  Aligned_cols=119  Identities=22%  Similarity=0.371  Sum_probs=103.3

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .+++..+.+.+||++|++++..++..+++++|++++|||+++++||+++..|+.........+.|+++||||+|+.+   
T Consensus        45 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~  124 (191)
T d2ngra_          45 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS  124 (191)
T ss_dssp             EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHH
T ss_pred             eeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccch
Confidence            35788899999999999999999999999999999999999999999998655555554445799999999999853   


Q ss_pred             ---------cccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 ---------LRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                               .+.+..++++++++..+ ++|+++||++|.||+++|+.+++.+
T Consensus       125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence                     24578899999998864 6999999999999999999888655

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.2e-25  Score=153.87  Aligned_cols=118  Identities=45%  Similarity=0.749  Sum_probs=110.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .++....+.+||++|++.+..++..++++++++|+|||++++++|+.+..|+..+........|+++||||+|+.+.+.+
T Consensus        48 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v  127 (167)
T d1z0ja1          48 YQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV  127 (167)
T ss_dssp             ETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS
T ss_pred             ccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccch
Confidence            46677888999999999999999999999999999999999999999999998887777678999999999999888889


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..++++++++..+++|+++||++|.||+++|.+|++.+
T Consensus       128 ~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         128 MERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             CHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999998865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=154.63  Aligned_cols=120  Identities=48%  Similarity=0.810  Sum_probs=103.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||+|++.+..++..+++++|++++|||+++++++..+..|+..+........|+++|+||.|+.+...
T Consensus        50 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~  129 (170)
T d2g6ba1          50 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV  129 (170)
T ss_dssp             EETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC
T ss_pred             EecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc
Confidence            46788899999999999999999999999999999999999999999999998888777666789999999999988888


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +..+++..+++..+++|+++||++|.|++++|++|++.+.
T Consensus       130 v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         130 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             SCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=154.87  Aligned_cols=122  Identities=34%  Similarity=0.498  Sum_probs=106.5

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      ..++..+.+.+||++|++.+. .+..+++++|++++|||+++++++..+..|+..+..... .+.|+++||||+|+...+
T Consensus        44 ~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r  122 (168)
T d2atva1          44 TIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR  122 (168)
T ss_dssp             EETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred             cccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhc
Confidence            357889999999999998764 456789999999999999999999999887766554433 579999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEAT-NVEKAFQTILTEIYHII  124 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~~~  124 (163)
                      .++.++++++++.++++|+++||++|. ||+++|..|++.+.+++
T Consensus       123 ~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         123 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             CSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999998 59999999998886543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=154.20  Aligned_cols=118  Identities=45%  Similarity=0.779  Sum_probs=110.1

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      .++..+.+.+||++|++.+..++..+++++|++|+|||+++.++++.+..|+..+.+....++|+++||||+|+...+.+
T Consensus        50 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v  129 (170)
T d1r2qa_          50 LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV  129 (170)
T ss_dssp             ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS
T ss_pred             ccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccc
Confidence            56778999999999999999999999999999999999999999999999999887766668999999999999888899


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.++++.+++.++++|+++||++|.||+++|+.|++.+
T Consensus       130 ~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         130 DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=155.28  Aligned_cols=120  Identities=29%  Similarity=0.511  Sum_probs=110.4

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++++|||++++.+|.++..|+..+..... .++|+++||||+|+...+
T Consensus        45 ~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  124 (167)
T d1kaoa_          45 EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             ecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcc
Confidence            4688899999999999999999999999999999999999999999999999998876544 578999999999998888


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++++.+++.++++|+++||++|.|++++|+.|++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         125 EVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            88899999999999999999999999999999999988763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-25  Score=154.11  Aligned_cols=120  Identities=28%  Similarity=0.433  Sum_probs=106.0

Q ss_pred             eecCEEEEEEEEeCC---ChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTA---GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~---G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~   77 (163)
                      .++++.+.+.+||++   |++++  ++..+++++|++|+|||++++.+++++..|+..+..... .++|+++||||+|+.
T Consensus        47 ~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  124 (172)
T d2g3ya1          47 MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV  124 (172)
T ss_dssp             EETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred             ccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccc
Confidence            468889999999965   45554  567789999999999999999999999999998876543 579999999999998


Q ss_pred             ccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      +.++++.++++++++.++++|+++||++|.|++++|+.|++.+..+
T Consensus       125 ~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         125 RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            8888999999999999999999999999999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=153.63  Aligned_cols=120  Identities=32%  Similarity=0.517  Sum_probs=109.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++|+|||++++.||+++..|+..+.+... .+.|+++||||+|+...+
T Consensus        45 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~  124 (167)
T d1c1ya_          45 EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             ESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred             EeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccccc
Confidence            4578889999999999999999999999999999999999999999999999998877544 578999999999998888


Q ss_pred             cCCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKE-GLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..+++..+++.+ +++|+++||++|.|++++|++|++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         125 VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            88899998898875 689999999999999999999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=154.94  Aligned_cols=117  Identities=31%  Similarity=0.562  Sum_probs=104.0

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~   82 (163)
                      +++..+.+.+||++|+..+..++..+++++|++++|||+++++||+.+..|+..+.+..+ ++|+++||||+|+...+..
T Consensus        47 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~  125 (170)
T d1i2ma_          47 TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK  125 (170)
T ss_dssp             BTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT
T ss_pred             cccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh
Confidence            477889999999999999999999999999999999999999999999999999887765 7999999999999754433


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           83 TEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                        ++...+++.++++|+++||++|.|++++|++|++.++.
T Consensus       126 --~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         126 --AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             --TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             --hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence              34556788889999999999999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.9e-24  Score=149.43  Aligned_cols=119  Identities=45%  Similarity=0.754  Sum_probs=108.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++|+|||++++.+++.+..|+..+........|+++|+||.|+.+   
T Consensus        46 ~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~  125 (170)
T d1ek0a_          46 TINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGG  125 (170)
T ss_dssp             EETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSC
T ss_pred             ccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccc
Confidence            45788999999999999999999999999999999999999999999999999887776666789999999999854   


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+.+..++++++++..+++|+++||++|.||+++|+.|++.+
T Consensus       126 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         126 ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            367888999999999999999999999999999999987654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-24  Score=147.82  Aligned_cols=119  Identities=34%  Similarity=0.608  Sum_probs=108.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      ..++..+.+.+||++|.+.+...+..++++++++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+. .+
T Consensus        45 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~  123 (166)
T d1ctqa_          45 VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-AR  123 (166)
T ss_dssp             EETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CC
T ss_pred             eeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cc
Confidence            3578889999999999999999999999999999999999999999999999999887654 468999999999985 46


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      .+..++++.+++.++++|+++||++|+||+++|..|++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999999998774

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.2e-24  Score=151.87  Aligned_cols=121  Identities=25%  Similarity=0.467  Sum_probs=105.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc---
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH---   78 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~---   78 (163)
                      .+++..+.+.+||++|++.+...+..+++++|++|+|||+++++||+.+..|+.........+.|+++||||+|+..   
T Consensus        44 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~  123 (179)
T d1m7ba_          44 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS  123 (179)
T ss_dssp             ECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred             cccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccch
Confidence            45788999999999999999999999999999999999999999999988766555444444799999999999853   


Q ss_pred             ---------cccCCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHH
Q 031238           79 ---------LRAVTEEDGHSLAEKEGL-SFLETSALEATN-VEKAFQTILTEIYH  122 (163)
Q Consensus        79 ---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~  122 (163)
                               .+.++.+++..++++++. .|+++||++|.| ++++|+.+++.+++
T Consensus       124 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         124 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence                     356889999999999874 899999999984 99999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7e-24  Score=147.56  Aligned_cols=121  Identities=43%  Similarity=0.748  Sum_probs=110.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~   80 (163)
                      .+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+..... ...|+++++||.|.. .+
T Consensus        50 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~  128 (177)
T d1x3sa1          50 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NR  128 (177)
T ss_dssp             EETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SC
T ss_pred             EEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cc
Confidence            4678899999999999999999999999999999999999999999999999999877654 568999999999974 47


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      .+..++++.+++.++++|+++||++|+|++++|+++++.+++.
T Consensus       129 ~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         129 EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             CSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            7888999999999999999999999999999999999888753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.9e-24  Score=147.05  Aligned_cols=121  Identities=36%  Similarity=0.617  Sum_probs=96.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCccc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~   79 (163)
                      ++..+.+.+|||+|++++...+..+++.+|++++|||++++.||+.+..|+..+.....    ..+|+++++||+|+.+.
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          48 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             CcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            44557889999999999999999999999999999999999999999999998876432    46899999999999765


Q ss_pred             -ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           80 -RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        80 -~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                       +.++.++++++++.++ ++|+++||++|.||+++|++|++.++++.
T Consensus       128 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         128 KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence             4467888999998886 68999999999999999999998887643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-23  Score=144.98  Aligned_cols=121  Identities=20%  Similarity=0.364  Sum_probs=103.0

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCeEEEEeeCCCCc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD---SNIVIMMAGNKSDLN-   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~Dl~-   77 (163)
                      .+++..+.+.+|||+|+..+     .+++++|++|+|||++++.||+.+..|+..+.....   ..+|+++|+||.|+. 
T Consensus        46 ~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          46 LVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             EETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             ecCceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence            56899999999999998765     378899999999999999999999999888865532   568999999998874 


Q ss_pred             -ccccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHh
Q 031238           78 -HLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEIYHIISKK  127 (163)
Q Consensus        78 -~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  127 (163)
                       ..+.+..++++.++.. ++++|+++||++|.|++++|..+++.+.....++
T Consensus       121 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         121 SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             SSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhhc
Confidence             3466788888888655 4679999999999999999999999998877554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-23  Score=144.67  Aligned_cols=120  Identities=48%  Similarity=0.854  Sum_probs=108.9

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~   81 (163)
                      .+++..+.+.+|||||++.+..++..+++++|++|+|||++++.+++.+..|+..+........|++++++|.|+.. +.
T Consensus        45 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~  123 (166)
T d1g16a_          45 DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RV  123 (166)
T ss_dssp             ESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CC
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hh
Confidence            45788899999999999999999999999999999999999999999999888888877776789999999999854 66


Q ss_pred             CCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ...++++.+++.++++|+++||++|.|++++|++|++.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         124 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             SCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            67889999999999999999999999999999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-24  Score=147.94  Aligned_cols=119  Identities=31%  Similarity=0.584  Sum_probs=102.2

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHH-HHHHHHhhcCCCCeEEEEeeCCCCccc-
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLR-WLRELRDHADSNIVIMMAGNKSDLNHL-   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~Dl~~~-   79 (163)
                      .+++..+.+.+||++|++.+..++..+++++|++++|||++++.+|+.+.. |...+... ..++|+++|+||+|+.+. 
T Consensus        47 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~  125 (183)
T d1mh1a_          47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDK  125 (183)
T ss_dssp             EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCH
T ss_pred             eccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhh
Confidence            468889999999999999999999999999999999999999999999876 44444444 447999999999997432 


Q ss_pred             -----------ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           80 -----------RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        80 -----------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                                 +.+...++..++++++ ++|++|||++|.||+++|+.|++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence                       3456778888998887 69999999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.5e-23  Score=141.62  Aligned_cols=115  Identities=34%  Similarity=0.645  Sum_probs=102.1

Q ss_pred             eecCEEEEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~   79 (163)
                      .+++....+.+||++|...+.. .++.+++++|++|+|||++++++|+.+..|+..+.+... .++|+++||||+|+.+.
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1          45 DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  124 (165)
T ss_dssp             EETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             eeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhc
Confidence            3567788999999999887754 567889999999999999999999999999999877644 57999999999999888


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALE---ATNVEKAFQTI  116 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l  116 (163)
                      +.++.++++.+++.++++|+++||++   +.||+++|++|
T Consensus       125 ~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         125 IQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            88999999999999999999999987   45999999876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.7e-23  Score=141.53  Aligned_cols=120  Identities=37%  Similarity=0.681  Sum_probs=106.8

Q ss_pred             eecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCc
Q 031238            2 IVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLN   77 (163)
Q Consensus         2 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~   77 (163)
                      .+++..+.+.+||++|...+...+..++..+|+++++||.+++.+++.+..|+..+.....    .++|+++||||.|+.
T Consensus        49 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~  128 (174)
T d1wmsa_          49 EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  128 (174)
T ss_dssp             EETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             eecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence            3577889999999999999999999999999999999999999999999999988876532    468999999999985


Q ss_pred             ccccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      + +.+..+++++++++.+ ++|+++||++|.||+++|++|++.++.
T Consensus       129 ~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         129 E-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             S-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             h-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            4 6788999999998764 799999999999999999999988753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=9.5e-23  Score=142.52  Aligned_cols=126  Identities=39%  Similarity=0.618  Sum_probs=107.8

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC----CCCeEEEEeeCCCCcc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD----SNIVIMMAGNKSDLNH   78 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~   78 (163)
                      +.+..+.+.+||++|+..+...+..++..+|++++|||.+++.+++.+..|+..+.....    .++|+++||||+|+.+
T Consensus        46 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~  125 (184)
T d1vg8a_          46 VDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN  125 (184)
T ss_dssp             SSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             eCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc
Confidence            456778899999999999999999999999999999999999999999999988876532    3689999999999865


Q ss_pred             cccCCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhHhHH
Q 031238           79 LRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEIYHIISKKAL  129 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~  129 (163)
                       +.+..++...++.. .+++|+++||++|.||+++|++|++.+++...+.+.
T Consensus       126 -~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~~~~  176 (184)
T d1vg8a_         126 -RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL  176 (184)
T ss_dssp             -CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccccccc
Confidence             55667777777654 578999999999999999999999988887665543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.86  E-value=1.2e-22  Score=141.78  Aligned_cols=117  Identities=17%  Similarity=0.317  Sum_probs=90.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~   83 (163)
                      .+.+.+.+||++|++.+..++..+++++|++++|||++++.++.+...|+..+..... .+.|+++|+||+|+.+.  ..
T Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~  135 (182)
T d1moza_          58 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LS  135 (182)
T ss_dssp             ETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CC
T ss_pred             eCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cC
Confidence            3457889999999999999999999999999999999999999998888777655433 57999999999998632  23


Q ss_pred             HHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           84 EEDGHSL-----AEKEGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        84 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ..++.+.     +...++++++|||++|+|++++|++|++.+.+.
T Consensus       136 ~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         136 ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3333222     223345799999999999999999999888653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.86  E-value=2e-22  Score=138.36  Aligned_cols=115  Identities=22%  Similarity=0.390  Sum_probs=92.5

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      ++..+.+.+||++|++.+...+..++++++++++|||+++..++++...|+..+..... .++|+++|+||.|+.+... 
T Consensus        43 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-  121 (164)
T d1zd9a1          43 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-  121 (164)
T ss_dssp             EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-
T ss_pred             eeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-
Confidence            44457899999999999999999999999999999999999999999888887765533 5799999999999864322 


Q ss_pred             CHHHHH-HH----HHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           83 TEEDGH-SL----AEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        83 ~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                       ..+.. .+    ++..++.++++||++|+|++++|++|++.+
T Consensus       122 -~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         122 -EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             -HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence             22222 22    223345789999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.86  E-value=6.6e-22  Score=136.95  Aligned_cols=114  Identities=20%  Similarity=0.303  Sum_probs=91.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAV   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~   82 (163)
                      +.+.+.+.+||++|++.+...+..+++.+|++|+|||+++..++.++..|+..+..... .++|+++|+||+|+....  
T Consensus        56 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--  133 (176)
T d1fzqa_          56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--  133 (176)
T ss_dssp             EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--
T ss_pred             ccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc--
Confidence            34457899999999999999999999999999999999999999999888877765443 579999999999996432  


Q ss_pred             CHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           83 TEEDGHSL-----AEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        83 ~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ......+.     +...+++++++||++|+|++++|++|++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            22332222     12234579999999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.85  E-value=2.6e-21  Score=132.71  Aligned_cols=118  Identities=21%  Similarity=0.298  Sum_probs=92.5

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~   81 (163)
                      ++.+.+.+.+||++|++.++..+..+++.++++++|||+++..++.+...++....... ..+.|+++|+||.|+.+...
T Consensus        41 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  120 (165)
T d1ksha_          41 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS  120 (165)
T ss_dssp             EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             ccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC
Confidence            34455789999999999999999999999999999999999999988876666554432 35799999999999964333


Q ss_pred             CCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           82 VTEEDGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        82 ~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                        .++.....     ...+++++++||++|+|++++|++|++.+..
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         121 --CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             --HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence              23322221     1224578999999999999999999988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.85  E-value=4.8e-22  Score=137.58  Aligned_cols=114  Identities=20%  Similarity=0.348  Sum_probs=91.1

Q ss_pred             CEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCeEEEEeeCCCCcccccCC
Q 031238            5 GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHA-DSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      ...+.+.+||++|+..++..+..++++++++|+|||+++..++..+..|+....... ....|+++++||+|+.+..  .
T Consensus        53 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~  130 (173)
T d1e0sa_          53 YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--K  130 (173)
T ss_dssp             ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--C
T ss_pred             ccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc--c
Confidence            345688999999999999999999999999999999999999999988877765543 3579999999999986422  2


Q ss_pred             HHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGHSL-----AEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ..++...     +...++.++++||++|+|++++|++|.+.+
T Consensus       131 ~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         131 PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            2222221     222355789999999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.79  E-value=7.2e-20  Score=124.03  Aligned_cols=116  Identities=18%  Similarity=0.323  Sum_probs=94.2

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCccccc
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRA   81 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~   81 (163)
                      .+...+.+.+||++|...+...+..+++.+++++++||.+++.++..+..|+..+..... ...|+++++||.|+.+...
T Consensus        39 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~  118 (160)
T d1r8sa_          39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN  118 (160)
T ss_dssp             EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             EeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc
Confidence            456677899999999999999999999999999999999999999998888877765544 5789999999999864322


Q ss_pred             CCHHHH-----HHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           82 VTEEDG-----HSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        82 ~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                        ..+.     ..+++..+++++++||++|+|++++|++|.+++
T Consensus       119 --~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         119 --AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             --HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence              2222     223334466899999999999999999998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.68  E-value=6.4e-17  Score=111.26  Aligned_cols=112  Identities=18%  Similarity=0.302  Sum_probs=84.6

Q ss_pred             EEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCHH
Q 031238            7 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      .+.+.+||++|.+.+...+..++..++++++++|.++..++.....+......... ...|+++|+||.|+.....  ..
T Consensus        58 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~  135 (177)
T d1zj6a1          58 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VA  135 (177)
T ss_dssp             TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HH
T ss_pred             ceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HH
Confidence            46789999999999999999999999999999999999998887665555444333 5799999999999864322  23


Q ss_pred             HHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           86 DGHSLA-----EKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ++....     ...+++++++||++|+|++++|++|.+.+
T Consensus       136 ~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         136 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            332222     22345799999999999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=7.3e-17  Score=112.33  Aligned_cols=121  Identities=16%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHH----------HH-HHHHHHHHhhcCCCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD----------NV-LRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~----------~~-~~~~~~i~~~~~~~~piivv~   71 (163)
                      +++..+.+++||++|++.+..++..++++++++++|||+++..++.          +. ..|...+........|+++++
T Consensus        37 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~  116 (195)
T d1svsa1          37 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL  116 (195)
T ss_dssp             EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             EEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEe
Confidence            4455678999999999999999999999999999999998876552          22 334443433334678999999


Q ss_pred             eCCCCcccc---------------cCCHHHHHH-----HHHH------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHLR---------------AVTEEDGHS-----LAEK------EGLSFLETSALEATNVEKAFQTILTEIYHI  123 (163)
Q Consensus        72 nK~Dl~~~~---------------~~~~~~~~~-----~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  123 (163)
                      ||.|+...+               .........     +...      ..+.++++||+++.||+++|+.+.+.+++.
T Consensus       117 Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             ECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            999963210               111222211     1111      134578999999999999999998887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-16  Score=112.05  Aligned_cols=122  Identities=13%  Similarity=0.110  Sum_probs=88.7

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh-----------HHHHHHHHHHHHHhhcCCCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ-----------TFDNVLRWLRELRDHADSNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~piivv~   71 (163)
                      +....+.+++||++|++.+...+..++.++++++++||.++..           .++....|...+......+.|+++++
T Consensus        40 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~  119 (200)
T d2bcjq2          40 FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  119 (200)
T ss_dssp             EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEE
T ss_pred             EeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEec
Confidence            3455668899999999999999999999999999999998753           23444566665555444679999999


Q ss_pred             eCCCCcccc----------------cCCHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHLR----------------AVTEEDGHSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        72 nK~Dl~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ||.|+...+                .........+...          ..+.++++||++|.||+++|+.+.+.+.+..
T Consensus       120 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             ECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            999974221                1122222222211          1245789999999999999999988887543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=5.3e-16  Score=107.15  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             EEEEEEeCCChhh--------HhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQER--------YRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+|||+|...        +.......++++|++|+|+|++++..... ..|...+.... .+.|+++|+||+|+.+.
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAKY  130 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCSS
T ss_pred             eeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhcccccccC
Confidence            4789999999732        23333455789999999999987644322 33444444433 36899999999998542


Q ss_pred             ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .   .+..+.+....+ ..++++||+++.|+++++++|++.+
T Consensus       131 ~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         131 P---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             H---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             H---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            2   233344444444 4789999999999999999987644

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=8.4e-15  Score=98.57  Aligned_cols=111  Identities=22%  Similarity=0.300  Sum_probs=87.3

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      ..+.+.+||++|...+...+..++..++++++++|.++..++.....|+........ .+.|+++++||.|+..  ....
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~  119 (166)
T d2qtvb1          42 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSE  119 (166)
T ss_dssp             TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCH
T ss_pred             CCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCH
Confidence            345678999999999999999999999999999999999988888777776665444 6789999999999864  2233


Q ss_pred             HHHHHHHH------------HcCCcEEEeccCCCCCHHHHHHHHHH
Q 031238           85 EDGHSLAE------------KEGLSFLETSALEATNVEKAFQTILT  118 (163)
Q Consensus        85 ~~~~~~~~------------~~~~~~~~~Sa~~~~~i~~~~~~l~~  118 (163)
                      .++.+...            ..++++++|||++|+|++|+|++|.+
T Consensus       120 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             HHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            33322221            12346899999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.59  E-value=2.1e-15  Score=102.22  Aligned_cols=115  Identities=20%  Similarity=0.317  Sum_probs=88.2

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-cCCCCeEEEEeeCCCCcccccCCH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~   84 (163)
                      +.+.+.+||.+|...+.......+...+++++++|+++..++.....++...... .....|+++++||.|+.+... ..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~  125 (169)
T d1upta_          47 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SS  125 (169)
T ss_dssp             TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HH
T ss_pred             CceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HH
Confidence            3467889999999999999999999999999999999888877776554444433 335789999999999864332 12


Q ss_pred             HHHHH----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           85 EDGHS----LAEKEGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        85 ~~~~~----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      +....    ++...+++|+++||++|.|++++|++|++.+.
T Consensus       126 ~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         126 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            22222    23334568999999999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5.1e-15  Score=103.40  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=82.4

Q ss_pred             ecCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChh----------HHHHHHHHHHHHHhhcC-CCCeEEEEe
Q 031238            3 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQ----------TFDNVLRWLRELRDHAD-SNIVIMMAG   71 (163)
Q Consensus         3 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~piivv~   71 (163)
                      ++.+.+.+++||++|++.+...+..+++++++++++||.++..          .+++...|+..+..... .+.|+++++
T Consensus        39 ~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~  118 (200)
T d1zcba2          39 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL  118 (200)
T ss_dssp             EEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             EeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEe
Confidence            4455678999999999999999999999999999999998743          34556666666654432 579999999


Q ss_pred             eCCCCcccc----------------cCCHHHHHHHHHH-----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q 031238           72 NKSDLNHLR----------------AVTEEDGHSLAEK-----------EGLSFLETSALEATNVEKAFQTILTEIYHII  124 (163)
Q Consensus        72 nK~Dl~~~~----------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ||.|+.+.+                .-..+.+.++...           ..+.++++||+++.||+++|+.+.+.+.+..
T Consensus       119 NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         119 NKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             ECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            999974211                1112233322221           1245778999999999999999988887654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=6.4e-14  Score=96.55  Aligned_cols=110  Identities=17%  Similarity=0.090  Sum_probs=74.4

Q ss_pred             EEEEEEeCCChhhH-------hhhhhhhhcCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERY-------RAITSAYYRGAVGALLVYDITKR--QTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~-------~~~~~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+++|||||....       .......+..++++++++|+...  ..+.....|+....... .++|+++|+||+|+.+
T Consensus        49 ~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~  127 (180)
T d1udxa2          49 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLE  127 (180)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSC
T ss_pred             CeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhh
Confidence            46889999995321       11122447789999999998653  23333444443322221 2579999999999865


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ...  .+...+.....+.+++++||++|.|++++++.|.+.+
T Consensus       128 ~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         128 EEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             HHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            332  2333444455678999999999999999999887776

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.51  E-value=1.6e-13  Score=94.12  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=81.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhh-cCCCCeEEEEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDH-ADSNIVIMMAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~   86 (163)
                      ..+.+||+.|...+...+..++...+++++++|+++...+.....++...... ...++|+++++||.|+..  .....+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~  134 (186)
T d1f6ba_          57 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEER  134 (186)
T ss_dssp             EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHH
T ss_pred             cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHH
Confidence            45789999999999999999999999999999999998888776544444432 235799999999999863  233444


Q ss_pred             HHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           87 GHSLAEK-----------------EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        87 ~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.+....                 .++++++|||++|+|++|+|++|.+++
T Consensus       135 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         135 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             HHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            4433321                 123589999999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5.8e-15  Score=99.92  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             EEEEEEeCCChhhH--------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            8 VKAQIWDTAGQERY--------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~--------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ..+.+||++|....        ......++..+|++++++|.++..+++....|...+.... .+.|+++|+||+|+.+.
T Consensus        49 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          49 MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGE  127 (161)
T ss_dssp             EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCC
T ss_pred             ceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhh
Confidence            46789999995322        1223456889999999999998777666655555444443 46899999999998543


Q ss_pred             ccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      ...       +.+..+.+++++||+++.|+++++++|.+.
T Consensus       128 ~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         128 TLG-------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCE-------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHH-------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            221       111235689999999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=9.7e-14  Score=94.87  Aligned_cols=113  Identities=19%  Similarity=0.101  Sum_probs=75.2

Q ss_pred             cCEEEEEEEEeCCChh---------hHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            4 EGKTVKAQIWDTAGQE---------RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~---------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.....+.+||++|..         .+......++..+|+++++.|.+...... ...++..+...   ++|+|+|+||+
T Consensus        44 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~  119 (171)
T d1mkya1          44 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKA  119 (171)
T ss_dssp             EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESC
T ss_pred             cccccccccccccceeeeeccccccccccccccccccCcEEEEeeccccccccc-ccccccccccc---cccccccchhh
Confidence            3344578999999942         22334445678999999999987653332 23334444333   57999999999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      |+.+..  ..+...++.+....+++++||++|.|+++++++|++.+.+
T Consensus       120 Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         120 ENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             CSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCC
Confidence            986321  1222223333333478999999999999999999987754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=3e-14  Score=101.63  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcC-CCCeEEEEee
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVLRWLRELRDHAD-SNIVIMMAGN   72 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piivv~n   72 (163)
                      +.+.+.+++||++|++.++..|..++.+++++++++|.++.          ..+.+...++..+..... .++|++|++|
T Consensus        43 ~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~N  122 (221)
T d1azta2          43 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN  122 (221)
T ss_dssp             EETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEE
T ss_pred             EECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEec
Confidence            33457899999999999999999999999999999999753          234455555555544432 5799999999


Q ss_pred             CCCCccccc----CC--------------------------HHHHHHHH-----HHc--------CCcEEEeccCCCCCH
Q 031238           73 KSDLNHLRA----VT--------------------------EEDGHSLA-----EKE--------GLSFLETSALEATNV  109 (163)
Q Consensus        73 K~Dl~~~~~----~~--------------------------~~~~~~~~-----~~~--------~~~~~~~Sa~~~~~i  109 (163)
                      |+|+.+.+.    ..                          ...+..+.     +..        .+..+++||+++.+|
T Consensus       123 K~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni  202 (221)
T d1azta2         123 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI  202 (221)
T ss_dssp             CHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHH
T ss_pred             hhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHH
Confidence            999843211    00                          11122221     111        133578999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 031238          110 EKAFQTILTEIYHIIS  125 (163)
Q Consensus       110 ~~~~~~l~~~~~~~~~  125 (163)
                      +.+|+.+.+.+++...
T Consensus       203 ~~vf~~v~d~I~~~~l  218 (221)
T d1azta2         203 RRVFNDCRDIIQRMHL  218 (221)
T ss_dssp             HHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999888776543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.45  E-value=5.9e-13  Score=91.79  Aligned_cols=111  Identities=19%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--HH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--EE   85 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~   85 (163)
                      ..+.++|++|+..+.......+..+|++++++|++.+..... ...+..+..   .++|+++|+||+|+.+.....  .+
T Consensus        59 ~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~  134 (179)
T d1wb1a4          59 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEM  134 (179)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHH
Confidence            467899999999998888888999999999999997543222 222222222   268999999999986532211  11


Q ss_pred             HHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           86 DGHSLAEKE----GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        86 ~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ..+.+.+..    +.+++++||++|+|++++++.|.+.+-+
T Consensus       135 ~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         135 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            222222221    3479999999999999999999887644

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.41  E-value=6.5e-13  Score=92.78  Aligned_cols=113  Identities=19%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC--C
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV--T   83 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~--~   83 (163)
                      ....+.|+||||+..|......-+..+|++++|+|+.++.........+..+... + ..+++++.||.|+.+....  .
T Consensus        76 ~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~-~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          76 FVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-G-QKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-CCCEEEEEECGGGSCHHHHHHH
T ss_pred             CceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-c-CccceeeeecccchhhHHHHHH
Confidence            3467899999999999887777788999999999998753222333333333322 2 2468889999998653221  1


Q ss_pred             HHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 EEDGHSLAEKEG---LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 ~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .....++....+   ++++++||++|+|++++++.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            223333443332   4799999999999999998887643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.40  E-value=2.9e-13  Score=96.82  Aligned_cols=113  Identities=20%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT   83 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~   83 (163)
                      +....++.|+||||+..|.......+..+|++|+|+|+.++-.... ...+..+..   .++|+|+++||+|+.+.....
T Consensus        66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~  141 (227)
T d1g7sa4          66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVH  141 (227)
T ss_dssp             GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCC
T ss_pred             cccccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhh
Confidence            3445578999999999988777778899999999999987533322 222333332   268999999999985422110


Q ss_pred             -------------H-------HHH----HHHHHH--------------cCCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           84 -------------E-------EDG----HSLAEK--------------EGLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        84 -------------~-------~~~----~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                                   .       ...    ..+...              ...+++++||.+|.|++++++.|....
T Consensus       142 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence                         0       000    111110              012589999999999999998877654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.38  E-value=1.6e-12  Score=91.41  Aligned_cols=111  Identities=16%  Similarity=0.112  Sum_probs=75.6

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--HH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--EE   85 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~   85 (163)
                      -.+.+.|+||+.+|-.....-+..+|++|+|+|+.++-.....+..+...... + -.|+||+.||+|+.+.....  ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~-i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T-CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C-CceeeeccccCCCccchHHHHHHH
Confidence            46889999999999777677788999999999998753222223333333222 1 35889999999996433211  12


Q ss_pred             HHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           86 DGHSLAEKE---GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        86 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      ....+....   +++++++||++|.|++++++.+...+
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            222233322   35799999999999999999877653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=2.4e-12  Score=88.48  Aligned_cols=107  Identities=25%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             EEEEeCCChh-----------h----HhhhhhhhhcCCcEEEEEEECCChhHHHHH----------HHHHHHHHhhcCCC
Q 031238           10 AQIWDTAGQE-----------R----YRAITSAYYRGAVGALLVYDITKRQTFDNV----------LRWLRELRDHADSN   64 (163)
Q Consensus        10 l~l~Dt~G~~-----------~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~----------~~~~~~i~~~~~~~   64 (163)
                      +.+|||||..           .    +.......++.+|++++|+|++.+......          ..++..+..   .+
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~  121 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LD  121 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TT
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cC
Confidence            5789999941           1    122233456789999999999764322111          112222222   36


Q ss_pred             CeEEEEeeCCCCcccccCCHHHHHHHHHHcC-------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           65 IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-------LSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        65 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      +|+++|+||+|+.....   +....+....+       ..++++||++|.|+++++++|.+.+.+
T Consensus       122 ~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            89999999999754222   12222222222       248899999999999999999887753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=3.7e-12  Score=85.64  Aligned_cols=104  Identities=22%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             EEEEEEEeCCChhhH---------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERY---------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      ...+.+|||+|....         .......+.++|++++|+|++++........+ ..+     ...++++++||.|+.
T Consensus        47 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~  120 (160)
T d1xzpa2          47 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVV  120 (160)
T ss_dssp             TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSC
T ss_pred             CeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeecccc
Confidence            456889999994211         01122246789999999999987654433222 111     257899999999986


Q ss_pred             ccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q 031238           78 HLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTE  119 (163)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  119 (163)
                      +..  ..++..... ..+.+++++||++|.|+++++++|.+.
T Consensus       121 ~~~--~~~~~~~~~-~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         121 EKI--NEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             CCC--CHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             chh--hhHHHHHHh-CCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            533  233332221 234689999999999999999988653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=3.9e-11  Score=83.98  Aligned_cols=76  Identities=18%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             CEEEEEEEEeCCChhhHh-hhhhhhhcCCcEEEEEEECCChhH-HHHHHHHHHHHHh-h--cCCCCeEEEEeeCCCCccc
Q 031238            5 GKTVKAQIWDTAGQERYR-AITSAYYRGAVGALLVYDITKRQT-FDNVLRWLRELRD-H--ADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         5 ~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~-~--~~~~~piivv~nK~Dl~~~   79 (163)
                      +..+.+.+||++|++.+. ..+..++..++++++|+|+++..+ +.+...|+..+.. .  ....+|++|++||+|+...
T Consensus        44 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          44 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            445678999999998885 567788899999999999998765 3444444444332 1  2246899999999999753


Q ss_pred             c
Q 031238           80 R   80 (163)
Q Consensus        80 ~   80 (163)
                      +
T Consensus       124 ~  124 (207)
T d2fh5b1         124 K  124 (207)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=1.1e-11  Score=85.42  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             EEEEEeCCChhhHhh----hh---hhhhcCCcEEEEEEECCChhH---HHHHHHHHHHHHh--hcCCCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYRA----IT---SAYYRGAVGALLVYDITKRQT---FDNVLRWLRELRD--HADSNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~----~~---~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~i~~--~~~~~~piivv~nK~Dl   76 (163)
                      .+.+|||||..+...    +.   -..+..++.++++++......   .+....+......  ....++|+++|+||+|+
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            578999999743221    11   123467899998887764322   2111111111111  11146899999999998


Q ss_pred             cccccCCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKE--GLSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      .+..    +..+.+.+..  +.+++.+||++|.|++++++.+.+.+
T Consensus       130 ~~~~----~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         130 PEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             TTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             HhHH----HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            6432    2333344433  56899999999999999999887765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=4.6e-11  Score=82.11  Aligned_cols=110  Identities=20%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             EEEEEeCCChhhHh------------hhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            9 KAQIWDTAGQERYR------------AITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .+.++|++|.....            ......++.+|++++|+|++.+..- ....+...+...   +.|+|+|+||+|+
T Consensus        57 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~~---~~~~i~v~nK~D~  132 (186)
T d1mkya2          57 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMERR---GRASVVVFNKWDL  132 (186)
T ss_dssp             EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHHT---TCEEEEEEECGGG
T ss_pred             eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHHc---CCceeeeccchhh
Confidence            46788999864321            2333456789999999999865332 222333333322   5899999999998


Q ss_pred             cccccCCHHHHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q 031238           77 NHLRAVTEEDGHSLAEKE-----GLSFLETSALEATNVEKAFQTILTEIYH  122 (163)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  122 (163)
                      ........++.....+..     ..+++++||++|.|++++++.|.+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         133 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            654444444443333321     2479999999999999999999765543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.21  E-value=9.6e-12  Score=86.97  Aligned_cols=113  Identities=19%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccC-
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAV-   82 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-   82 (163)
                      +.....+.++||||+..|......-+..+|++|+|+|++++..- +....+..+...  ...|+||+.||.|+...... 
T Consensus        62 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~  138 (196)
T d1d2ea3          62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI--GVEHVVVYVNKADAVQDSEMV  138 (196)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHH
T ss_pred             EeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh--cCCcEEEEEecccccccHHHH
Confidence            33445788999999999987777778999999999999976432 233333333333  23689999999998543221 


Q ss_pred             --CHHHHHHHHHHcC-----CcEEEeccCCC----------CCHHHHHHHHHHH
Q 031238           83 --TEEDGHSLAEKEG-----LSFLETSALEA----------TNVEKAFQTILTE  119 (163)
Q Consensus        83 --~~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~~~~~l~~~  119 (163)
                        ...++..+....+     ++++++||++|          .++.++++.+.+.
T Consensus       139 ~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         139 ELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              1223444444444     46899999988          3677777666443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=9.9e-10  Score=75.93  Aligned_cols=89  Identities=10%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH----cCCcEEEec
Q 031238           27 AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK----EGLSFLETS  102 (163)
Q Consensus        27 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S  102 (163)
                      ..+..+|++++++|++.+..- ....+++.+...   ++|+++|+||+|+...... .+..+.+.+.    .+.+++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEe
Confidence            335567999999999865321 112333434332   5899999999998543332 2222223222    235799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 031238          103 ALEATNVEKAFQTILTEI  120 (163)
Q Consensus       103 a~~~~~i~~~~~~l~~~~  120 (163)
                      |++|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999988765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.97  E-value=1.9e-09  Score=76.46  Aligned_cols=99  Identities=26%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCC-CeEEEEeeCCCCcccccCCH--
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN-IVIMMAGNKSDLNHLRAVTE--   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piivv~nK~Dl~~~~~~~~--   84 (163)
                      .++.|+|+||+..|-.....-...+|++|+|+|+..+..-. ....+......   + ..+|++.||+|+.+..+...  
T Consensus        89 ~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~---gv~~iiv~vNK~D~~~~~~~~~~~  164 (222)
T d1zunb3          89 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFES  164 (222)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHc---CCCEEEEEEEccccccccceehhh
Confidence            46889999999999777777789999999999998753322 22222222222   3 45889999999865322112  


Q ss_pred             --HHHHHHHHHcCC-----cEEEeccCCCCCHH
Q 031238           85 --EDGHSLAEKEGL-----SFLETSALEATNVE  110 (163)
Q Consensus        85 --~~~~~~~~~~~~-----~~~~~Sa~~~~~i~  110 (163)
                        ++...+.+..++     +++++||.+|.|+.
T Consensus       165 ~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         165 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence              233445555544     57899999999873

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=2.9e-10  Score=79.74  Aligned_cols=96  Identities=18%  Similarity=0.098  Sum_probs=63.0

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCe-EEEEeeCCCCcccccC--
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAV--   82 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~--   82 (163)
                      ...++.|+||||+.+|-.....-++.+|++|+|+|++++...+... .+......   ++| +++++||+|+.+....  
T Consensus        65 ~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~  140 (204)
T d2c78a3          65 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLD  140 (204)
T ss_dssp             SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHH
T ss_pred             CCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHH
Confidence            3456789999999999887777889999999999998875543333 23333322   454 7888999998542221  


Q ss_pred             -CHHHHHHHHHHcC-----CcEEEeccCC
Q 031238           83 -TEEDGHSLAEKEG-----LSFLETSALE  105 (163)
Q Consensus        83 -~~~~~~~~~~~~~-----~~~~~~Sa~~  105 (163)
                       ..+++..+....+     ++++..|+..
T Consensus       141 ~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         141 LVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHHHHHhcCCCcccceeeeeechh
Confidence             1223334444333     3578888753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.5e-09  Score=69.84  Aligned_cols=107  Identities=21%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             EEEEEeCCChhhH---------hhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            9 KAQIWDTAGQERY---------RAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         9 ~l~l~Dt~G~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      .+.+||++|....         ..........+++++++.|........  ..+...+.   ....|+++++||.|+...
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          54 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCC
T ss_pred             eeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccch
Confidence            4567888875322         112222345678888888887643221  22222222   235788999999997654


Q ss_pred             ccCCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q 031238           80 RAVTEEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEI  120 (163)
Q Consensus        80 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  120 (163)
                      +.......+.+....+ .+++++||++|.|++++++.|.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            3333344455555555 4899999999999999999887654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.79  E-value=5.5e-09  Score=74.01  Aligned_cols=104  Identities=18%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH------HHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF------DNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +.....+.|.||||+..|......-++-+|+.|+|+|+..+..-      ......+.... ..+ ..++|++.||.|+.
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~-~~~iIv~iNK~D~~  154 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG-LDQLIVAVNKMDLT  154 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT-CTTCEEEEECGGGS
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhC-CCceEEEEEcccCC
Confidence            34456789999999999988888889999999999999975321      11221111111 112 34688899999985


Q ss_pred             ccccCC---H----HHHHHHHHHcC-----CcEEEeccCCCCCHH
Q 031238           78 HLRAVT---E----EDGHSLAEKEG-----LSFLETSALEATNVE  110 (163)
Q Consensus        78 ~~~~~~---~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  110 (163)
                      .. ...   .    +.+..+....+     ++++++||..|.|+.
T Consensus       155 ~~-~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         155 EP-PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             SS-TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             Cc-cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            31 111   1    22333444333     368899999999874

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.77  E-value=2.6e-08  Score=72.28  Aligned_cols=65  Identities=14%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl   76 (163)
                      .++.|+||||+.+|.......++-+|++|+|+|+.++.......-| ....+.   ++|.++++||.|.
T Consensus        67 ~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~~---~~p~~i~iNk~D~  131 (267)
T d2dy1a2          67 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAERL---GLPRMVVVTKLDK  131 (267)
T ss_dssp             EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCEEEEEECGGG
T ss_pred             cceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhhc---ccccccccccccc
Confidence            4688999999999988888889999999999999987554433333 333333   6899999999985

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=7.4e-09  Score=74.09  Aligned_cols=103  Identities=14%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHH------HHHHHHHHHHHhhcCCCC-eEEEEeeCCCCcc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF------DNVLRWLRELRDHADSNI-VIMMAGNKSDLNH   78 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~-piivv~nK~Dl~~   78 (163)
                      ...++.|.||||+.+|......-...+|++|+|+|+..+..-      .+....+......   ++ ++|+++||+|+.+
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCC
Confidence            446899999999999987777778999999999999864210      1222222222222   34 5889999999864


Q ss_pred             cccCCH----HHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q 031238           79 LRAVTE----EDGHSLAEKEG-----LSFLETSALEATNVEK  111 (163)
Q Consensus        79 ~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  111 (163)
                      ......    ++...+....+     ++++.+|+..|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            322111    23344444444     4689999999988643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=3.1e-08  Score=71.01  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=58.1

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhH---HH---HHHHHHHHHHhhcCCCCeEEEEeeCCCCccc
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVLRWLRELRDHADSNIVIMMAGNKSDLNHL   79 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~   79 (163)
                      ...++.|.|+||+..|......-...+|++++|+|+..+..   +.   +....+...... + -.+++++.||.|+...
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~-i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-G-INHLVVVINKMDEPSV  177 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-T-CSSEEEEEECTTSTTC
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-C-CCeEEEEEEcCCCCcc
Confidence            34578999999999998777777889999999999987421   10   122222222211 1 2358899999998532


Q ss_pred             cc--CCHH----HHHHHHHHc-C------CcEEEeccCCCCCHHHHHH
Q 031238           80 RA--VTEE----DGHSLAEKE-G------LSFLETSALEATNVEKAFQ  114 (163)
Q Consensus        80 ~~--~~~~----~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~~~  114 (163)
                      ..  -..+    +...+..+. +      ++++++||++|+|+.++++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            11  0111    122222222 2      3689999999999977543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=3.2e-08  Score=68.44  Aligned_cols=73  Identities=22%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             EEEEEEEeCCChhhHhhhhhhh----hcCCcEEEEEEECCC-hhHHHHHHHHHHHH----HhhcCCCCeEEEEeeCCCCc
Q 031238            7 TVKAQIWDTAGQERYRAITSAY----YRGAVGALLVYDITK-RQTFDNVLRWLREL----RDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         7 ~~~l~l~Dt~G~~~~~~~~~~~----~~~~d~ii~v~d~~~-~~s~~~~~~~~~~i----~~~~~~~~piivv~nK~Dl~   77 (163)
                      ...+.+||+||+..+...+..+    ...++.+++++|+.+ ..+++++..|+..+    ......+.|+++|+||+|+.
T Consensus        45 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~  124 (209)
T d1nrjb_          45 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  124 (209)
T ss_dssp             GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccc
Confidence            3457899999998765554444    445689999999774 55566665554433    23333579999999999986


Q ss_pred             cc
Q 031238           78 HL   79 (163)
Q Consensus        78 ~~   79 (163)
                      ..
T Consensus       125 ~~  126 (209)
T d1nrjb_         125 TA  126 (209)
T ss_dssp             TC
T ss_pred             cc
Confidence            53

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=1e-07  Score=69.27  Aligned_cols=87  Identities=18%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             EEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHH
Q 031238            6 KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEE   85 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~   85 (163)
                      +..++.|+||||+.+|-......++-+|+.|+|+|+.++.......-| ......   ++|.++++||.|..... . ..
T Consensus        69 ~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~---~lP~i~fINKmDr~~ad-~-~~  142 (276)
T d2bv3a2          69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY---KVPRIAFANKMDKTGAD-L-WL  142 (276)
T ss_dssp             TTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT---TCCEEEEEECTTSTTCC-H-HH
T ss_pred             CCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc---CCCEEEEEecccccccc-c-ch
Confidence            345689999999999988888889999999999999987665444444 444333   69999999999975321 1 33


Q ss_pred             HHHHHHHHcCCcE
Q 031238           86 DGHSLAEKEGLSF   98 (163)
Q Consensus        86 ~~~~~~~~~~~~~   98 (163)
                      ...++...++..+
T Consensus       143 ~l~ei~~~l~~~~  155 (276)
T d2bv3a2         143 VIRTMQERLGARP  155 (276)
T ss_dssp             HHHHHHHTTCCCE
T ss_pred             hHHHHHHHhCCCe
Confidence            3444445555443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.3e-07  Score=66.62  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             hhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHH--cCCcEEEe
Q 031238           25 TSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK--EGLSFLET  101 (163)
Q Consensus        25 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~  101 (163)
                      .+...++.|.+++|+++.+|+ +...+..++.....   .+++.+||+||+||.+..+  .+....+...  .+++++.+
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~v   78 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKT   78 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEEC
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEe
Confidence            455678999999999988764 34445555544432   3689999999999964222  1222223332  34689999


Q ss_pred             ccCCCCCHHHHHHHH
Q 031238          102 SALEATNVEKAFQTI  116 (163)
Q Consensus       102 Sa~~~~~i~~~~~~l  116 (163)
                      |++++.|++++.+.+
T Consensus        79 Sa~~~~g~~~L~~~l   93 (225)
T d1u0la2          79 SAKTGMGIEELKEYL   93 (225)
T ss_dssp             CTTTCTTHHHHHHHH
T ss_pred             ccccchhHhhHHHHh
Confidence            999999999987755

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=9.8e-08  Score=71.41  Aligned_cols=70  Identities=20%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             cCEEEEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCc
Q 031238            4 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLN   77 (163)
Q Consensus         4 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~   77 (163)
                      +++.+.+.|+||||+.+|.......++-+|++|+|+|+..+.......-|.. ...   .++|+++++||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH---cCCCeEEEEECcccc
Confidence            4567889999999999998888888999999999999998765544333332 222   368999999999963

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.33  E-value=3.7e-06  Score=58.94  Aligned_cols=111  Identities=14%  Similarity=-0.045  Sum_probs=65.1

Q ss_pred             EEEEEeCCChhhHhhhhhh---h--hcCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            9 KAQIWDTAGQERYRAITSA---Y--YRGAVGALLVYDITK---RQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         9 ~l~l~Dt~G~~~~~~~~~~---~--~~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      .+.+.|++|+..+......   .  ....+.+++++|+..   +..+.............  -..|.++|+||.|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            4678999999765332111   1  224678999999853   33332221111111111  258999999999985321


Q ss_pred             cCCH-----------------------HHHHHH---HHH--cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 031238           81 AVTE-----------------------EDGHSL---AEK--EGLSFLETSALEATNVEKAFQTILTEIY  121 (163)
Q Consensus        81 ~~~~-----------------------~~~~~~---~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  121 (163)
                      ....                       .....+   ...  ..++++++||++|+|+++++..|.+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            1100                       000000   111  2357999999999999999999888764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=1.3e-06  Score=63.28  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             hhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238           25 TSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        25 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      ....++.+|+||+|+|+.+|.+..+  ..+..+.   . ++|+|+|+||+|+.+...  .+...++....+..++.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~---~-~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL---K-NKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC---S-SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH---c-CCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            3456899999999999988765322  1122222   2 579999999999964221  122223334446789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 031238          105 EATNVEKAFQTILTEIYHII  124 (163)
Q Consensus       105 ~~~~i~~~~~~l~~~~~~~~  124 (163)
                      ++.++..+...+.+.+....
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhh
Confidence            99999988888877665543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=1.9e-07  Score=66.01  Aligned_cols=88  Identities=15%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             hhhhhcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH---HHHHHHcCCcEEE
Q 031238           25 TSAYYRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG---HSLAEKEGLSFLE  100 (163)
Q Consensus        25 ~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~  100 (163)
                      .+...++.|.+++|+++.+|+ +...+..++.....   .+++.+||+||+||..+.+. .+..   .+.....|++++.
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~   79 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYL   79 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHH-HHHHHHHHHHHhhcccccee
Confidence            455678999999999998764 45555555544332   36899999999999643221 1222   2333456899999


Q ss_pred             eccCCCCCHHHHHHHH
Q 031238          101 TSALEATNVEKAFQTI  116 (163)
Q Consensus       101 ~Sa~~~~~i~~~~~~l  116 (163)
                      +|++++.|++++.+.+
T Consensus        80 ~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          80 TSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             eecCChhHHHHHHHhh
Confidence            9999999988776654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.2e-05  Score=53.73  Aligned_cols=86  Identities=19%  Similarity=0.049  Sum_probs=51.3

Q ss_pred             CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--HHHHHHHHHHcC--CcEEEeccCCC
Q 031238           31 GAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--EEDGHSLAEKEG--LSFLETSALEA  106 (163)
Q Consensus        31 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~  106 (163)
                      ..+.++.+.+........ ...++..+..   ...++++++||.|+.+.....  .+...+.....+  .+++.+||++|
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             TEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             heeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            445555666665443222 2333333332   257899999999986432221  122222233332  37899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 031238          107 TNVEKAFQTILTEI  120 (163)
Q Consensus       107 ~~i~~~~~~l~~~~  120 (163)
                      .|++++++.|.+.+
T Consensus       174 ~Gid~L~~~i~~~~  187 (188)
T d1puia_         174 QGVDKLRQKLDTWF  187 (188)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999887654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.95  E-value=1.2e-05  Score=59.38  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDG   87 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~   87 (163)
                      +.+.|.+|.|.-.-.   .....-+|.+++|..+..++.....+.-+   .+     ..=++|+||.|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gi---lE-----~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---FE-----LADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---HH-----HCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhH---hh-----hhheeeEeccccccchHHHHHHH
Confidence            345677776642211   12345699999999998766554332211   11     22378999999865333222222


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhH
Q 031238           88 HSLAEK----------EGLSFLETSALEATNVEKAFQTILTEIYHIISK  126 (163)
Q Consensus        88 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  126 (163)
                      ..+...          +..+++.+||.++.|++++++++.+........
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~  261 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTAT  261 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHC
Confidence            222221          334799999999999999999998766554433

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=5.3e-05  Score=57.44  Aligned_cols=105  Identities=8%  Similarity=0.109  Sum_probs=60.2

Q ss_pred             EEEEeCCChhhHhh-----hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc------
Q 031238           10 AQIWDTAGQERYRA-----ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH------   78 (163)
Q Consensus        10 l~l~Dt~G~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~------   78 (163)
                      +.||||||......     +....+..+|.++++.|..-....   ..++..+...   ++|+++|.||+|...      
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d---~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKND---IDIAKAISMM---KKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHH---HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTT
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHHH---HHHHHHHHHc---CCCEEEEEeCcccccchhhhc
Confidence            67999999754221     223346678998888775432222   2333333332   689999999999521      


Q ss_pred             -cccCCHHH----HHH----HHHHcCC---cEEEeccCCC--CCHHHHHHHHHHHH
Q 031238           79 -LRAVTEED----GHS----LAEKEGL---SFLETSALEA--TNVEKAFQTILTEI  120 (163)
Q Consensus        79 -~~~~~~~~----~~~----~~~~~~~---~~~~~Sa~~~--~~i~~~~~~l~~~~  120 (163)
                       ......+.    +++    .....+.   ++|.+|..+.  .|+.++.+.+.+.+
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence             11122222    111    1222233   5788887543  47888888876654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=2.1e-05  Score=58.21  Aligned_cols=105  Identities=16%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             EEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCC--HHHH
Q 031238           10 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVT--EEDG   87 (163)
Q Consensus        10 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~   87 (163)
                      +.|.+|.|.-.-.   ......+|.+++|.++...+.....+..+.+   .     +-++|+||.|+.......  ..+.
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---~-----aDi~VvNKaD~~~~~~~~~~~~~~  217 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME---V-----ADLIVINKDDGDNHTNVAIARHMY  217 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH---H-----CSEEEECCCCTTCHHHHHHHHHHH
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc---c-----ccEEEEEeecccchHHHHHHHHHH
Confidence            4566665532211   1356679999999987665544433332222   2     226788999985422211  1122


Q ss_pred             HHHHH-------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q 031238           88 HSLAE-------KEGLSFLETSALEATNVEKAFQTILTEIYHIIS  125 (163)
Q Consensus        88 ~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  125 (163)
                      +....       .+..+++.+||.+|+|++++++.|.+.......
T Consensus       218 ~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~  262 (327)
T d2p67a1         218 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA  262 (327)
T ss_dssp             HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence            22211       123479999999999999999999876654443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.09  E-value=0.00088  Score=47.40  Aligned_cols=76  Identities=12%  Similarity=-0.018  Sum_probs=41.8

Q ss_pred             EEEEEEeCCChhhHh-------hhhh--hhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCeEEEEeeCCCC
Q 031238            8 VKAQIWDTAGQERYR-------AITS--AYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS--NIVIMMAGNKSDL   76 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~-------~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl   76 (163)
                      ..+.||||||.....       ....  ......++++||++++...--......+..+....+.  -.++++|+||.|.
T Consensus        80 ~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~  159 (257)
T d1h65a_          80 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF  159 (257)
T ss_dssp             EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred             EEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECccc
Confidence            468899999964221       1111  1234578999999887531111112222333332221  2579999999998


Q ss_pred             cccccCC
Q 031238           77 NHLRAVT   83 (163)
Q Consensus        77 ~~~~~~~   83 (163)
                      .......
T Consensus       160 ~~~~~~~  166 (257)
T d1h65a_         160 SPPDGLP  166 (257)
T ss_dssp             CCGGGCC
T ss_pred             CCcCCCc
Confidence            6544443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.48  E-value=0.0031  Score=45.09  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             EEEEEeCCChhh-------------HhhhhhhhhcCCc-EEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            9 KAQIWDTAGQER-------------YRAITSAYYRGAV-GALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         9 ~l~l~Dt~G~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      .+.|+|+||...             ...+...|+...+ ++++|.+++....-.....+...+   .+...++++|.||+
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~---~~~~~r~i~Vltk~  202 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKL  202 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH---CTTCSSEEEEEECG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh---CcCCCceeeEEecc
Confidence            378999999532             2345566677776 555666776554444444555544   33356899999999


Q ss_pred             CCccc
Q 031238           75 DLNHL   79 (163)
Q Consensus        75 Dl~~~   79 (163)
                      |..+.
T Consensus       203 D~~~~  207 (299)
T d2akab1         203 DLMDE  207 (299)
T ss_dssp             GGSCT
T ss_pred             ccccc
Confidence            98543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.10  E-value=0.0063  Score=43.63  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=42.4

Q ss_pred             EEEEEeCCChhh-------------HhhhhhhhhcCCcEEEEEE-ECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            9 KAQIWDTAGQER-------------YRAITSAYYRGAVGALLVY-DITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         9 ~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      .+.|+|+||...             ...+...|+.+++.+|+++ +.+....-.....+...+   .+...++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            467999999632             2356677889999877666 444322222233444443   33356899999999


Q ss_pred             CCcc
Q 031238           75 DLNH   78 (163)
Q Consensus        75 Dl~~   78 (163)
                      |...
T Consensus       209 D~~~  212 (306)
T d1jwyb_         209 DLMD  212 (306)
T ss_dssp             TSSC
T ss_pred             cccc
Confidence            9743

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.19  E-value=0.34  Score=33.75  Aligned_cols=41  Identities=17%  Similarity=0.067  Sum_probs=26.4

Q ss_pred             CCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEeccC
Q 031238           64 NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL  104 (163)
Q Consensus        64 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  104 (163)
                      .+|++++.|..+......-..+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            48999999965432111111355666777778889999883

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.2  Score=33.84  Aligned_cols=91  Identities=14%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             EEEEEEeCCChhhHhh----hhhh---hhc-----CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQERYRA----ITSA---YYR-----GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----~~~~---~~~-----~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.+.|+||+|....+.    ....   ..+     ..+-+++|.|++.. +....+...+..+    +   +-=++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----G---LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----C---CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----C---CceEEEeec
Confidence            4578999999532211    1111   122     24688999999854 4444444433322    1   224688999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEK  111 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  111 (163)
                      |-..    ..=.+.......++++..++  .|+++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9532    12234455667788888777  4777654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.27  E-value=0.71  Score=30.57  Aligned_cols=76  Identities=13%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhHhhhhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEE-EEeeCCCCcccccCCHHH
Q 031238            8 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIM-MAGNKSDLNHLRAVTEED   86 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~   86 (163)
                      +.+.++|+++.....  ....+..+|.++++... +..++..+......+.+.   +.|++ +|.|+.+... ..+....
T Consensus       112 ~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQLD--AMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSHH--HHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEccccccccc--chhhhhhhhcccccccc-cceecchhhHHHHHHhhh---hhhhhhhhhccccccc-chhhhHH
Confidence            567899998865432  33456779999999876 455666666655555433   56765 7899998533 3444444


Q ss_pred             HHHH
Q 031238           87 GHSL   90 (163)
Q Consensus        87 ~~~~   90 (163)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4433

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.15  E-value=0.29  Score=33.00  Aligned_cols=91  Identities=18%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             EEEEEEeCCChhhHhh------hhhhh--hcCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcc
Q 031238            8 VKAQIWDTAGQERYRA------ITSAY--YRGAVGALLVYDITKRQ-TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH   78 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~------~~~~~--~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~   78 (163)
                      ..+.|+||+|...+..      ....+  .-..+-+++|.|++... ..+.+...+..    .  +.. =+|.||.|-. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~--~~~-~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S--KIG-TIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C--TTE-EEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c--Ccc-eEEEecccCC-
Confidence            4689999999632221      11111  22356789999998643 34333332221    1  222 3679999952 


Q ss_pred             cccCCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q 031238           79 LRAVTEEDGHSLAEKEGLSFLETSALEATNVEK  111 (163)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  111 (163)
                         ...=.....+...++++..++.  |+++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it~--Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIGT--GEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEEC--SSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEeC--CCCccc
Confidence               2233445566777888877774  776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=91.92  E-value=0.35  Score=32.45  Aligned_cols=90  Identities=18%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             EEEEEEeCCChhhHhh----hhhhh--hcCCcEEEEEEECCChhH-HHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccc
Q 031238            8 VKAQIWDTAGQERYRA----ITSAY--YRGAVGALLVYDITKRQT-FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLR   80 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~   80 (163)
                      ..+.|+||+|...++.    .+..+  ..+.+-+++|.|++.+.. .+.+...+..+    +   +-=+++||.|-..  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCccc--
Confidence            3578999999633211    11111  335688999999986543 33332222221    1   1136889999421  


Q ss_pred             cCCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q 031238           81 AVTEEDGHSLAEKEGLSFLETSALEATNVE  110 (163)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  110 (163)
                        ..=.+...+...+.++..++.  |+..+
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~~--Gq~pe  189 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAGV--SEKPE  189 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC--------
T ss_pred             --cchHHHHHHHHHCCCEEEEeC--CCChh
Confidence              223345566777888777653  44444

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=91.52  E-value=0.11  Score=35.27  Aligned_cols=92  Identities=17%  Similarity=0.106  Sum_probs=51.1

Q ss_pred             EEEEEEeCCChhhHhh----hhhhh---hc-----CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQERYRA----ITSAY---YR-----GAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----~~~~~---~~-----~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.+.|+||+|...++.    ....+   .+     ..+-+++|.|++.. +.+.++...+..+    +   +-=+|.||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----~---~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV----N---VTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS----C---CCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc----C---CceEEEecc
Confidence            3579999999532211    11111   11     14678999999854 3444443333222    1   224688999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  112 (163)
                      |-.  ..  .=.+...+...++++..++  +|++++++
T Consensus       167 De~--~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         167 DGT--AK--GGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GGC--SC--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             cCC--Cc--ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            942  11  1233455666788887777  47666543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=89.12  E-value=1.4  Score=29.39  Aligned_cols=92  Identities=10%  Similarity=0.016  Sum_probs=51.9

Q ss_pred             EEEEEEeCCChhhHhh----hhhhh---h-----cCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCeEEEEeeCC
Q 031238            8 VKAQIWDTAGQERYRA----ITSAY---Y-----RGAVGALLVYDITKR-QTFDNVLRWLRELRDHADSNIVIMMAGNKS   74 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~----~~~~~---~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~   74 (163)
                      +.+.|+||+|...++.    .+..+   .     ...+-+++|+|++.. +....+...+..+      + +-=++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------C-CceEEEecc
Confidence            4678999999633211    11111   1     245778999999854 4555555544433      1 124688999


Q ss_pred             CCcccccCCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q 031238           75 DLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKA  112 (163)
Q Consensus        75 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  112 (163)
                      |-...-    =.+.......++++..++.  |++.+++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl  193 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVGV--GEGPDDL  193 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEEC--SSSTTCE
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEeC--CCChHhC
Confidence            953211    1233455667888777764  5555443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=1.2  Score=29.78  Aligned_cols=72  Identities=14%  Similarity=0.083  Sum_probs=39.2

Q ss_pred             CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcC--CcEEEeccCCCCCH
Q 031238           32 AVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG--LSFLETSALEATNV  109 (163)
Q Consensus        32 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i  109 (163)
                      .+++|.|+|+............+........     ++|+||+|+...    .+..++..+..+  .++++++ .-...+
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD-----~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v~~  191 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGYAD-----RILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDIDL  191 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHTCS-----EEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCCCG
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHhCC-----cccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCccCH
Confidence            5889999999875432222222222222222     678999998542    234444555554  4666644 223455


Q ss_pred             HHHH
Q 031238          110 EKAF  113 (163)
Q Consensus       110 ~~~~  113 (163)
                      +.+|
T Consensus       192 ~~ll  195 (222)
T d1nija1         192 GLLF  195 (222)
T ss_dssp             GGGS
T ss_pred             HHhh
Confidence            5554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.26  E-value=0.65  Score=32.78  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             EEEEEEEEeCCChhhH----hhhhhh---hhcCCcEEEEEEECC
Q 031238            6 KTVKAQIWDTAGQERY----RAITSA---YYRGAVGALLVYDIT   42 (163)
Q Consensus         6 ~~~~l~l~Dt~G~~~~----~~~~~~---~~~~~d~ii~v~d~~   42 (163)
                      ....++++|+||....    ..+...   .++.+|++++|+|+.
T Consensus        69 ~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          69 ALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             EEEEEEEEECC---------------CCCSSTTCSEEEEEEETT
T ss_pred             ccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            3467999999996432    112222   356899999999985

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=80.46  E-value=5.1  Score=25.38  Aligned_cols=55  Identities=11%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             CChhHHHHHHHHHHHHHhhcCCCCeEEEEeeCCCCcccccCCHHHHHHHHHHcCCcEEEec
Q 031238           42 TKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETS  102 (163)
Q Consensus        42 ~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  102 (163)
                      +|+.+++........+..  ..+.|+|++|......    -..++..++++..+++++.+-
T Consensus         3 sd~~~l~~~v~~~~~~l~--~AkrPvIi~G~g~~~~----~a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIA--NRDKVAVLVGSKLRAA----GAEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHT--TCSCEEEEECTTTTTT----TCHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHH--cCCCEEEEECcCcccc----chHHHHHHHHHhhceeEEecc
Confidence            455566554333333322  2468999999998753    247788889999999887553

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.31  E-value=6.3  Score=26.40  Aligned_cols=88  Identities=10%  Similarity=0.032  Sum_probs=51.6

Q ss_pred             EEEEEEeCCChhhHhh-hhhhhhcCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCe-EEEEeeCCCCcccccCCH
Q 031238            8 VKAQIWDTAGQERYRA-ITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHAD-SNIV-IMMAGNKSDLNHLRAVTE   84 (163)
Q Consensus         8 ~~l~l~Dt~G~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iivv~nK~Dl~~~~~~~~   84 (163)
                      +.+.+.|+++...... ........+|.++++.+. +..++.........+..... .+.+ .-+|.|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4578999986543222 222233568888888766 45566655555444444332 2333 347889987643    34


Q ss_pred             HHHHHHHHHcCCcEEE
Q 031238           85 EDGHSLAEKEGLSFLE  100 (163)
Q Consensus        85 ~~~~~~~~~~~~~~~~  100 (163)
                      +..+.+++..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5667777778876554